<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:48:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329451" ref_strand="+" ref_description="SGN-E329451 [cTOD-11-C4]">
      <seq>tcgacttgttgaagtgaggaaagagctcgatgacttgagggacaaactccaacctttgatgatgaggtataagaaagagaaggaaccgggttgatgagcttcgaaggcttaagcaaaagcgccgatgaacttacatatgcctttacaagaagctgaaaggagatatgatcttgctagagcagcagatcttagataccggtgccatccaagaagtagaatctgcaatagcaaatcttgagagtagcacagatgagagtaccaatgttgacagagactgtcggacccgatcagattgcggaagtagttagtcgctggactggaattcctgtctctaggcttggccagaatgagaaggagaaattgattggtcttgctgatagattgcaccctaagagttgtcgggcaagatcaagctgttaaagctgttgctgaggctgtgttgaggtctagagctggattaggaaggccacagcaaccaactggttcattccttttcttggggcccactggtgttggaaagactgaacttgctaaagctcttgctgagcagctatttgatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7303" stop="8459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7603" g_stop="8159" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E329451" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7603" e_stop="8159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACTTGTTGAAGTGAGGAAAGAGCTTGATGATTCGAGGGACAAACTCCAGCCTTTGATGATGAGGTATAACAAGGAGAAGGAA-CGGATTGATGAGCTTCGAAGGCTTAAGCAAAAGCG-CGATGCACTGACCTATG-CTTTACAAGACGCTGAAAGGAGATATGATCTTGCCAGAGCAGCAGATCTTAGATA-TGGTGCCATCCAAGATGTGGAAGCTGCAATAGCCAATCTTGAGAGTAGCACAGATGAGAGTA-GAATGTTAACAGAGACTGTTGGACCCGATCAGATTGCGGAAGTAGTTAGTCGCTGGACTGGAATTCCTGTCTCTAGGCTTGGGCAGAATGAGAAGGAGAAATTGATTGGTCTTGCTGATAGATTGCA-CCAAAGAGTTGTGGGGCAAGATGAAGCTGTAAAAGCTGTTACTGAGGCTGTGTTGAGGTCTAGAGCTGGATTAGGAAGGCCACAACAACCAACTGGTTCATTCCTTTTCTTGGGGCCAACTGGTGTTGGAAAGACAGAACTTGCTAAAGCTCTTGCTGAGCAGCTCTTTGATGATG</genome_strand>
        <mrna_strand>TCGACTTGTTGAAGTGAGGAAAGAGCTCGATGACTTGAGGGACAAACTCCAACCTTTGATGATGAGGTATAAGAAAGAGAAGGAACCGGGTTGATGAGCTTCGAAGGCTTAAGCAAAAGCGCCGATGAACTTACATATGCCTTTACAAGAAGCTGAAAGGAGATATGATCTTGCTAGAGCAGCAGATCTTAGATACCGGTGCCATCCAAGAAGTAGAATCTGCAATAGCAAATCTTGAGAGTAGCACAGATGAGAGTACCAATGTTGACAGAGACTGTCGGACCCGATCAGATTGCGGAAGTAGTTAGTCGCTGGACTGGAATTCCTGTCTCTAGGCTTGGCCAGAATGAGAAGGAGAAATTGATTGGTCTTGCTGATAGATTGCACCCTAAGAGTTGTCGGGCAAGATCAAGCTGTTAAAGCTGTTGCTGAGGCTGTGTTGAGGTCTAGAGCTGGATTAGGAAGGCCACAGCAACCAACTGGTTCATTCCTTTTCTTGGGGCCCACTGGTGTTGGAAAGACTGAACTTGCTAAAGCTCTTGCTGAGCAGCTATTTGATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375601" ref_strand="+" ref_description="SGN-E375601 [TUS-35-A21](-)">
      <seq>tactctgctcccaaatttgaggtcaaaatgatcacagtgttggtaaaatcaccagtacgaccttgaccatcagttaatcttccatcatccaacacttgaagcaaggcattaaacactgcagggtgagctttttccacttcgtcaaatagcacaacactgtaagggcgcctccttacagcttccgtaagttgccctccttcctcatgtccaacataacctggtggagcaccaatcaaccgggcaacagaatgttgttccatgtattcggacatgtcaattctgaccatcaatttgtcatcatcaaatagctgctcagcaagagctttagcaagttcagtctttccaacaccagttggccccaagaaaaggaatgaaccagttggttgctgtggccttcctaatccagctctagacctcaacacagcctcagcaacagctttaacagcttgatcttgcccgacaactcttaggtgcaatctatcagcaagaccaatcaatttctccttctcattctggccaagcctagagacaggaattccagtccagcgactaactacttccgcaatctgatcgggtccgacagtctctgtcaacattgtactctcatctgtgctactctcaagatttgctattgcagattctacttcttggatggcaccgtatctaagatctgctgctctagcaagatcatatctcctttcagcttcttgtaaagcatatgtaagttcatcgcgcttttgcttgagaactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8754" stop="7409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8454" g_stop="7703" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E375601" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8454" e_stop="7703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCGCTCCCAAATTTGAGGTCATAATGATCACAGTGTTGGTGAAATCAACAGTACGACCTTGACCATCAGTTAATCTACCATCATCCAACACTTGAAGCAAGGCATTAAACACAGTTGGATGAGCTTTTTCAACTTCGTCGAAAAGCACAACACTGTAAGGTCGCCTCCTTACAGCTTTGGTAAGTTGTCCTCCTTCCTCATGTCCGACATAACCTGGTGGAGCCCCAATCAACCTGGCAACAGAATGTTGCTCCATGTATTCGGACATGTCGATTCTGACCATCAATTTGTCATCATCAAAGAGCTGCTCAGCAAGAGCTTTAGCAAGTTCTGTCTTTCCAACACCAGTTGGCCCCAAGAAAAGGAATGAACCAGTTGGTTGTTGTGGCCTTCCTAATCCAGCTCTAGACCTCAACACAGCCTCAGTAACAGCTTTTACAGCTTCATCTTGCCCCACAACTCTTTGGTGCAATCTATCAGCAAGACCAATCAATTTCTCCTTCTCATTCTGCCCAAGCCTAGAGACAGGAATTCCAGTCCAGCGACTAACTACTTCCGCAATCTGATCGGGTCCAACAGTCTCTGTTAACATTCTACTCTCATCTGTGCTACTCTCAAGATTGGCTATTGCAGCTTCCACATCTTGGATGGCACCATATCTAAGATCTGCTGCTCTGGCAAGATCATATCTCCTTTCAGCGTCTTGTAAAGCATAGGTCAGTGCATCGCGCTTTTGCTTAAGCCTTCG</genome_strand>
        <mrna_strand>TACTCTGCTCCCAAATTTGAGGTCAAAATGATCACAGTGTTGGTAAAATCACCAGTACGACCTTGACCATCAGTTAATCTTCCATCATCCAACACTTGAAGCAAGGCATTAAACACTGCAGGGTGAGCTTTTTCCACTTCGTCAAATAGCACAACACTGTAAGGGCGCCTCCTTACAGCTTCCGTAAGTTGCCCTCCTTCCTCATGTCCAACATAACCTGGTGGAGCACCAATCAACCGGGCAACAGAATGTTGTTCCATGTATTCGGACATGTCAATTCTGACCATCAATTTGTCATCATCAAATAGCTGCTCAGCAAGAGCTTTAGCAAGTTCAGTCTTTCCAACACCAGTTGGCCCCAAGAAAAGGAATGAACCAGTTGGTTGCTGTGGCCTTCCTAATCCAGCTCTAGACCTCAACACAGCCTCAGCAACAGCTTTAACAGCTTGATCTTGCCCGACAACTCTTAGGTGCAATCTATCAGCAAGACCAATCAATTTCTCCTTCTCATTCTGGCCAAGCCTAGAGACAGGAATTCCAGTCCAGCGACTAACTACTTCCGCAATCTGATCGGGTCCGACAGTCTCTGTCAACATTGTACTCTCATCTGTGCTACTCTCAAGATTTGCTATTGCAGATTCTACTTCTTGGATGGCACCGTATCTAAGATCTGCTGCTCTAGCAAGATCATATCTCCTTTCAGCTTCTTGTAAAGCATATGTAAGTTCATCGCGCTTTTGCTTGAGAACTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698889" ref_strand="+" ref_description="SGN-E698889 [FA07DF11]">
      <seq>tggattaggaaggccacagcaaccaactggttcattccttttcttggggccaactggcgttggaaagactgaacttgctaaagctcttgctgagcagctatttgatgatgacaaattgatggtcagaattgacatgtcccaatacatggaacaacattctgttgcccggctgattggtgctccaccaggttatgttggacatgaggaaggagggcaacttacggaagctgtaaggaggcgcccttacagtgttgtgctatttgacgaagtggaaaaagctcaccctgcagagtttaatgcccttgcttcaagtgttggatgatggaagattaactgatggtcaaggtcgtactgttgatttcaccaacactgtgatcattatgacctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7750" stop="8737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8050" g_stop="8437" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E698889" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8050" e_stop="8437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATTAGGAAGGCCACAACAACCAACTGGTTCATTCCTTTTCTTGGGGCCAACTGGTGTTGGAAAGACAGAACTTGCTAAAGCTCTTGCTGAGCAGCTCTTTGATGATGACAAATTGATGGTCAGAATCGACATGTCCGAATACATGGAGCAACATTCTGTTGCCAGGTTGATTGGGGCTCCACCAGGTTATGTCGGACATGAGGAAGGAGGACAACTTACCAAAGCTGTAAGGAGGCGACCTTACAGTGTTGTGCTTTTCGACGAAGTTGAAAAAGCTCATCCAACTGTGTTTAATG-CCTTGCTTCAAGTGTTGGATGATGGTAGATTAACTGATGGTCAAGGTCGTACTGTTGATTTCACCAACACTGTGATCATTATGACCTCA</genome_strand>
        <mrna_strand>TGGATTAGGAAGGCCACAGCAACCAACTGGTTCATTCCTTTTCTTGGGGCCAACTGGCGTTGGAAAGACTGAACTTGCTAAAGCTCTTGCTGAGCAGCTATTTGATGATGACAAATTGATGGTCAGAATTGACATGTCCCAATACATGGAACAACATTCTGTTGCCCGGCTGATTGGTGCTCCACCAGGTTATGTTGGACATGAGGAAGGAGGGCAACTTACGGAAGCTGTAAGGAGGCGCCCTTACAGTGTTGTGCTATTTGACGAAGTGGAAAAAGCTCACCCTGCAGAGTTTAATGCCCTTGCTTCAAGTGTTGGATGATGGAAGATTAACTGATGGTCAAGGTCGTACTGTTGATTTCACCAACACTGTGATCATTATGACCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375951" ref_strand="+" ref_description="SGN-E375951 [TUS-40-E12](-)">
      <seq>ggattaatcatcacatcaaagtaaaaattagtaaaattccaactgtcatgtataagtgtaagttggcggagttcgtacaagactcagatacacagagtgacaatgattatgaagggtctgatgatgagttggaggctgaactacgcgatatgatagagaagctttacaaagagctggaaggtgtttcaaatctgcagggtgaaactttgaggcatggggaatttagtaatgtgaaaaaagaatcggtatcatcaaacttggagattcagcctgaaactagcagaggattatatacaaatgagccgtgcgaatcattagaggaggctcttattcaagctagagcagagaaaatagaagcagagattgaagttgagcgactaaaggcaagcattgtcaagaagaacaattatgtccaagaattgaacaaaatccttgaagcagtaaaggcagagagagatcagttgaaagtcagagttgcaatgcttcatgatgaccctgagtcagcaaagcctttgcaccaaaatgattaaccatgagtaatgtgttgatttaattttgttttttcaaatgaatgtcgtgaaggtagagaaattgtatccgataaatgaacattatgaatcataataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10523" stop="9294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10223" g_stop="9602" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="623" polyA_stop="636"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E375951" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10223" e_stop="9602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTAATCATCACATCAAAGGAAAAATTAGTAAAATTCCAACTGTCATGTATAAGTGTAAGTTGGCGGAGTTCGTACAAGACTCAGATACACAGAGTGACAATGATTATGAAGGGTCTGATGATGAGTTGGAGGCTGAACTACGCGATATGATAGAGAAGCTTTACAAAGAGCTGGAAGGTGTTTCAAATCTGCAGGGTGAAACTTTGAGGCATGGGGAATTTAGTAATGTGAAAAAAGAATCGGTATCATCAAACTTGGAGATTCAGCCTGAAACTAGCAGAGGATTATATACAAATGAACCGTGCGAATCATTAGAGGAGGCTCTTATTCAAGCTAGAGCAGAGAAAATAGAAGCAGAGACTGAAGTTGAGCGACTAAAGGCAAGCATTGTCAAGAAGAACAATTATGTCCAAGAATTGAACAAAATCCTTGAAGCAGTAAAGGCAGAGAGAGATCAGTTGAAAGTCAGAGTTGCAATGCTTCATGATGACCCTGAGTCAGCAAAGCCTTTGCACCAAAATGATTAACCATGAGTAATGTGTTGATTTAATTTTGTTTTTTCAAATGAATGTCGTGAAGGTAGAGAAATTGTATCCGATAAATGAACATTATGAATCAT</genome_strand>
        <mrna_strand>GGATTAATCATCACATCAAAGTAAAAATTAGTAAAATTCCAACTGTCATGTATAAGTGTAAGTTGGCGGAGTTCGTACAAGACTCAGATACACAGAGTGACAATGATTATGAAGGGTCTGATGATGAGTTGGAGGCTGAACTACGCGATATGATAGAGAAGCTTTACAAAGAGCTGGAAGGTGTTTCAAATCTGCAGGGTGAAACTTTGAGGCATGGGGAATTTAGTAATGTGAAAAAAGAATCGGTATCATCAAACTTGGAGATTCAGCCTGAAACTAGCAGAGGATTATATACAAATGAGCCGTGCGAATCATTAGAGGAGGCTCTTATTCAAGCTAGAGCAGAGAAAATAGAAGCAGAGATTGAAGTTGAGCGACTAAAGGCAAGCATTGTCAAGAAGAACAATTATGTCCAAGAATTGAACAAAATCCTTGAAGCAGTAAAGGCAGAGAGAGATCAGTTGAAAGTCAGAGTTGCAATGCTTCATGATGACCCTGAGTCAGCAAAGCCTTTGCACCAAAATGATTAACCATGAGTAATGTGTTGATTTAATTTTGTTTTTTCAAATGAATGTCGTGAAGGTAGAGAAATTGTATCCGATAAATGAACATTATGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346954" ref_strand="+" ref_description="SGN-E346954 [cTOF-25-C21]">
      <seq>acagagaaagcgtgcatttccatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13442" stop="17467"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13742" g_stop="13799" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="111" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="220" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="273" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="328" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="417" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17167" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="481" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E346954" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13742" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGAGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAA</genome_strand>
        <mrna_strand>ACAGAGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591372" ref_strand="+" ref_description="SGN-E591372 [45083]">
      <seq>agaaagcgttgcattcccatcggccgcgaagataaacgaatcatccgattgaaaggtgggcttctcatctcttatctgaaacaagatatttgtgcaatcatggctgaagaagagaatcaaaacgagttggtggctgatatagcaccttttgatcctacaaaaaagaagaaaaagaaaaaggttgtaattcaagatcctgcagatgactctgctgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaagaagaagaagccggcacactctgatctcctgagtgatgaaaaagaaagcgttggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggacagttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaggagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaaatcagttgcttcctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13446" stop="18951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13746" g_stop="13829" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13830" i_stop="14562" i_length="733">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="138" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="247" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="300" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="355" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="444" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="590" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="733" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="819" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E591372" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13746" e_stop="13829"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGCG-TGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG</genome_strand>
        <mrna_strand>AGAAAGCGTTGCATTCCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTGGGCTTCTCATCTCTTATCTGAAACAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTGGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAAAAGGTTGTAATTCAAGATCCTGCAGATGACTCTGCTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAGAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACTCTGATCTCCTGAGTGATGAAAAAGAAAGCGTTGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACAGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731004" ref_strand="+" ref_description="SGN-E731004 [LA25DE01]">
      <seq>caatgcgtgcatttccatcggccgcgaagataaacgaatcatcctattgaaagatcttagtgcaatcatggctgaagaagagaatcatgacgagttggtagctgatatagcaccttttgatcctactgaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatatcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaaaaagaagccgggacactctgatctcctgagagatgaaaaagaaagtatcggtgaggatgtatatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13448" stop="19642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13747" g_stop="13799" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="106" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="215" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="268" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="323" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="412" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="558" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="701" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="702" r_stop="787" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="19313" g_stop="19342" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="788" r_stop="817" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E731004" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13747" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATC</genome_strand>
        <mrna_strand>CAATGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCTATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCATGACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACTGAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATATCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAAAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGAGATGAAAAAGAAAGTATCGGTGAGGATGTATATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E539747" ref_strand="+" ref_description="SGN-E539747 [TUS-59-K16]">
      <seq>gaaagcgtgcatttccatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccggttagttttgttcaattcgacatgaatttgttttgattgaattatccatgaataccttgccccctcatctattttctggctccaacctctcctggaagaggacactggtggaggactaaatggtgcaataggaacatgaatgtttacacgtagagggtacagaaaaagagggtgggagtgaagagatgattaagggaagcttatttttttttctttcttatgtatctcaagaaacccatttttttgaactcccctgacacataatacggtcagttttatcagaataagatttcacgagggtttaaatgctacagaaatagtcaaaggcttaaacttatgacctcattatgttttagtgtgattcactcaataatacaagacattaggagtattttcttgagatccattgtcatgacccatcacaaaccattttaaaactgtgcagggacactctgatctcctgagtgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13447" stop="16711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13747" g_stop="13799" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="106" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="215" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="16411" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="742" r_length="527" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E539747" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13747" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="16411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAA</genome_strand>
        <mrna_strand>GAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465838" ref_strand="+" ref_description="SGN-E465838 [cPRO-22-K22]">
      <seq>aaacgttgcttttccatcggccgcgaagataaacgaatcatcccattgaaagatattagtgcaatcatggctgaagaagagaatcaaaacgagttggtggctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatcctgcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaagaagaagaagccggcacactctgatctcctgagtgatgaaaaagaaagcgttggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggacagttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaanggatcctccgccgatatgtcaatgagtatgttatttgcaatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13449" stop="18727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13748" g_stop="13799" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="105" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="214" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="267" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="322" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="411" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="557" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="700" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18564" g_stop="18587" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="724" r_length="24" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E465838" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13748" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCT</genome_strand>
        <mrna_strand>AAACGTTGCTTTTCCATCGGCCGCGAAGATAAACGAATCATCCCATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTGGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCTGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAGAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACTCTGATCTCCTGAGTGATGAAAAAGAAAGCGTTGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACAGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAANGGATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTTATTTGCAATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284520" ref_strand="+" ref_description="SGN-E284520 [cLES-3-A22]">
      <seq>aaagcgtgcatttccatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccggttagttttgttcaattcgacatgaatttgttttgattgaattatccatgaataccttgccccctcatctattttctggctccaacctctcctggaagaggacactggtggaggactaaatggtgcaataggaacatgaatgtttacacgtagagggtacagaaaaagagggtgggagtgaagagatgattaagggaagcttatttttttttctttcttatgtatctcaagaaacccatttttttgaactcccctgacacataatacggtcagttttatcagaataagatttcacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13448" stop="16534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13748" g_stop="13799" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="105" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="214" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="16234" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="564" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E284520" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13748" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="16234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGA</genome_strand>
        <mrna_strand>AAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288539" ref_strand="+" ref_description="SGN-E288539 [cLES-8-G19]">
      <seq>gcgtgcatttccatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatatcatggatctttgcaagacgatgcataggcagcctgagcatgttatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13451" stop="18591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13751" g_stop="13799" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="102" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="211" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="264" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="319" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="408" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="554" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18291" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="584" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E288539" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13751" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGAC</genome_strand>
        <mrna_strand>GCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATATCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730478" ref_strand="+" ref_description="SGN-E730478 [LA24BA08]">
      <seq>ccatttagatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13456" stop="19722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13755" g_stop="13799" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="0.93"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="98" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="208" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="261" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="316" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="405" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="551" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="694" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="695" r_stop="780" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="19313" g_stop="19422" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="781" r_stop="890" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E730478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13755" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTG-AAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCA</genome_strand>
        <mrna_strand>CCATTTAGATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705902" ref_strand="+" ref_description="SGN-E705902 [FA28BH03]">
      <seq>catttccatcggccgcgaagataaacgaatcatccgattgaaagatcttagtgcaatcatggctgaagaagagaatcaaaacgagttggtagctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccggtcttttcttcctccgatgcgagaagtgtggctctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13456" stop="18951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13756" g_stop="13799" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="97" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="206" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="259" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="314" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="403" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="549" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="692" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="779" r_length="87" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E705902" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E705902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13756" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACC-GTCTTTTCTTCCTCCGATGCGAGAAG</genome_strand>
        <mrna_strand>CATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGGTCTTTTCTTCCTCCGATGCGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571850" ref_strand="+" ref_description="SGN-E571850 [30912]">
      <seq>cttttccatcggccgcgaagataaacgaatcatcccattgaaagatattagtgcaatcatggctgaagaagagaatcaaaacgagttggtggctgatatagcaccttttgatcctacaaaaaagaagaaaaagaagaaggttgtaattcanagatcctgcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaagaaagccggacatctgatctcctgagtgatgaaaaagaaagcgttggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtatcaatatctccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13456" stop="17433"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13756" g_stop="13799" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763">
            <donor d_prob="0.996" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14563" g_stop="14615" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="97" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="207" r_length="110" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="256" r_length="49" r_score="0.925"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="0.92"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="310" r_length="54" r_score="0.891"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="399" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17104" g_stop="17133" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="427" r_length="28" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E571850" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13756" e_stop="13799"/>
          <exon e_start="14563" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAGGTGAATTTCTGGAGATATTGTTATGATTTTCTCCATTTTTGTTGATTGTGATAGTTTGGATTAACTTTTATGTATTTTTGAGCATCTAGAATAGCTAATTAGAACGATTTAGGGTTTATGTGCGAGTTATAATACATATTATATTCATGTTCCTTTTTTATGTATGTTTGAATTTATGTGAAGCAATGTGAATTTCTGGAGCTACTTTACGATTTTTCTCTATTTTTAGAGTATTGTGATGGTTTGCGTTAGTTTTTATGTTATTTTTAGCATCTAGATAAGTTACTTATGAGGAATTAGGGTTTAGTGCGATTAATAATACACATTACAATCATGTTTTGTCTTTCGCCTGAGTGAATTTATTCGATACAAGGCAAATCTGGAGCTATTGTTACAATTTATTCTATTTTAGAGTATTGTGATAGATTGAATTAGTTTTTATGTATTTTCCAGCATCTATAGAAGTTACTTACAAGGAATTAGGGTTTATGTGCGATAAAACAATACTCATTACATTCATTGTTTTTGCCTGTGAGGATTTATCTGAAAAAAGGTGAATTCCTGGAGCTATTTTTTGATGTTATATATTTTTGGATGATTGTGATAGTCTGCATTAGTTTTTAAGGTTTTTGCGCATCTGAAAAAGTTACAAGGATTTAGGGTTTAGGTGGCTGATATTACTCCATATTATTGTTTTGTGTGTGAACTAATTTGTTGGTTCGTATTGGTGTAGATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCA-AGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGT</genome_strand>
        <mrna_strand>CTTTTCCATCGGCCGCGAAGATAAACGAATCATCCCATTGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTGGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCANAGATCCTGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAG-AAAAG-A-AAGCC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACA-TCTGATCTCCTGAGTGATGAAAAAGAAAGCGTTGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTA-TCAATA-TCTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574636" ref_strand="+" ref_description="SGN-E574636 [34134]">
      <seq>atcaaaacgagttggtggctgatatagcaccttttgatcctacaaaaaagaagaaaaagaaaaaggttgtaattcaagatcctgcagatgactctgctgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaagaagaagaagccggcacactctgatctcctgagtgatgaaaaagaaagcgttggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggacagttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgncgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14293" stop="18918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14593" g_stop="14615" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15572" g_stop="15680" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="132" r_length="109" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="185" r_length="53" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="240" r_length="55" r_score="0.891"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="329" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="475" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="618" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="18564" g_stop="18618" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="619" r_stop="673" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E574636" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E574636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14593" e_stop="14615"/>
          <exon e_start="15572" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAACGAGTTGGTAGCTGATGTAAGTTCAGCTTTTCCTCTGCCTGTGTTCCTCTTTAGAGTATTGTTGTTTGAAGTTTTCGGTATTTGCTATATTGGTTTTCATGATCTCTTGGTAATTTCTTTTTGTTTGTGCATGACTATGAGAATGATAATTCCTGAATTTAAGTGCCAGGCAGTGTGTATACTTCTTGAAGAGTTTTAACCAACAAAAAGGCACACTAAATAAGAATCCCTAATTAAGGATTGAGTTTATTTTATTTTTTTTTGCAAAGAATGCTTAGACAATTTTAAAAGCCAACCAATAAGTAATGGTTTATAATAGACAGAGATTTGTTACCTGAAAAGATGGTAAGAAACCTTATATAAATGATTGAAGTTTATAGACAGTATTAAACTTTACAATGTCGGCATTTTATAACTTAAGTCCTTGAGAATTTTTATATTTTAGTTGTCAGGACAAAGTGCTAAGGTTTCCTGATGTCCGTTGTTCACATCATCTCTTCAAACAGTGTCTGCTTTGGCTTCCAACATTCTGATATCTAGGATATTTGTTAATAGGATCACTGAACTACACAATTTAATGTTAACAGTAATGCCACAGGATTCACTTGCAACCTAAGTTGTGTTGGTTGGTTTAATTGCAAAAATATCTAAAAAACTAGTAGTTGTGCTTCTATGGAGCTCCTCTTGTGGCCCCATTAGCATGGAGTCTCTTATGCTTTTTCTAGGGGTGTATTTGCAGGGGAGGGATTATTTGGTACCCCTTAGGTTGTAGCCATTGTTGTCATCAAACTGTAGATAGAAATGGTGTTGGTCGCTTACCTCTTCAGTTAAATTCAATTGAACAACACGAAATAGTTGATTGGTTTTACCTCGATTTTCAAATTGATTGTTGTTGATATCACACGGAGCCTATTTTGTGTGGTTGCTACATTGGTTTCATTATCTTTTCCGTCTCTTTCTATACATTTACAGATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGA</genome_strand>
        <mrna_strand>ATCAAAACGAGTTGGTGGCTGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAAAAGGTTGTAATTCAAGATCCTGCAGATGACTCTGCTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAGAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACTCTGATCTCCTGAGTGATGAAAAAGAAAGCGTTGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACAGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGNCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701805" ref_strand="+" ref_description="SGN-E701805 [FA17AA03]">
      <seq>aaagaataaaaagaagaaggttgtaattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagaatacgttggagttttgtatgttttgctttgtgtttaacctgaggaaacatattgaagtttggtgcgactttgcttatgaagaaagttggtttagatttactttgtcgggaaatgttatcttgtttaattcctaaaaatgtgggtttaaacttggtttcctcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15295" stop="19894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15595" g_stop="15680" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="139" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="194" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="283" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="429" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="572" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="658" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19313" g_stop="19601" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="948" r_length="290" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E701805" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>947</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15595" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGT-GGCTTATACTTGTTTTCCTCTTATATTCAACT</genome_strand>
        <mrna_strand>AAAGAATAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAATACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAAACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTCGGGAAATGTTATCTTGTTTAATTCCTAAAAATGTGGGTTTAAACTTGGTTTCCTCTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334614" ref_strand="+" ref_description="SGN-E334614 [cTOD-23-E22]">
      <seq>taattcaagatccggcagatgactctgttgatagcttggctgaaaaaactgagaatttatctgtttctgagggccttgaggctacgttttctggtaaaaagaaaaagaagaagccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15318" stop="19697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15618" g_stop="15680" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15885" g_stop="15937" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="116" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16383" g_stop="16437" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="171" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="260" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="406" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="549" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="635" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="19313" g_stop="19397" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="636" r_stop="720" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E334614" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15618" e_stop="15680"/>
          <exon e_start="15885" e_stop="15937"/>
          <exon e_start="16383" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTGGTATTTAGTTGTAAAACCTGGTTTCACCTAATTTTCTCCATAACCTTAAGAGAGATGGTAGTGTATAATTGCATAGTCAATCTTGCCCCCTCCCCAAAATCCCCAAAAAGATGCATTCTCTCACATGTACACACCATCTGAAGAGAGACTACTGAAGAACATCTGAAACTTGAATGTGATTTCTCTCAATTGTTTTCTTTGCAGTTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATAC</genome_strand>
        <mrna_strand>TAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG............................................................................................................................................................................................................TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599781" ref_strand="-" ref_description="SGN-E599781 [52777]">
      <seq>ttgagatccatcgtcatgacccatcacgagaccactttaaaacctgtgcaggcacactctgatctccttgagtgatgaaaaagaaaagcgttcggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggacagttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaggagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacggcttgggggttgttatttgggcagtttcttctcataatagagtatgttggagttttgtatgttttgctttgtgtgtgtttaacctgatgaggagacatattgacgtttggtgcaactttgcatatgaagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16034" stop="19814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16334" g_stop="16437" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.79"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="198" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="344" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="487" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="573" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19313" g_stop="19460" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="574" r_stop="727" r_length="154" r_score="0.838"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E599781" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599781" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16334" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGATCCATTGTCATGACCCATCAC-AAACCATTTTAAAA-CTGTGCAGGGACACTCTGATCTCC-TGAGTGATGAAAAAG-AAAG-TATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATA---CATACGGCTTGGGGATT--G-AATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGT</genome_strand>
        <mrna_strand>TTGAGATCCATCGTCATGACCCATCACGAGACCACTTTAAAACCTGTGCAGGCACACTCTGATCTCCTTGAGTGATGAAAAAGAAAAGCGTTCGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACAGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACGGCTTGGGGGTTGTTATTTGGGCAGTTTCTTCTCATAATAGAGTATGTTGGAGTTTTGTATGTTTTGCTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334739" ref_strand="+" ref_description="SGN-E334739 [cTOE-3-M11]">
      <seq>gccgggacactctgatctcctgagtgatgaaaaagaaagtatcggtgaggatgtagatgatcaacccggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16079" stop="18652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16379" g_stop="16437" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.909" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="148" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="294" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18262" g_stop="18352" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="385" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E334739" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16379" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATC</genome_strand>
        <mrna_strand>GCCGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG............................................................................ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587984" ref_strand="-" ref_description="SGN-E587984 [41527]">
      <seq>gagtgatgaaaaagaaagcgttggcgaggaagtagatgatcaacctggagatgatgaagaagctggagaaattgtcctacaacagttaccttgggagggaactgatcgagattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggacagttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaggagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacggcttgggggttgttatttgggcagtttcttctcataatagagtatgttggagttttgtatgttttgctttgtgtgtgtttaacctgatgaggagacatattgacgtttggtgcaactttgcatatgaagagagttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16100" stop="19819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16400" g_stop="16437" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.868"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.909" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16514" g_stop="16602" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="127" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="273" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="416" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="502" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="19313" g_stop="19519" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="722" r_length="220" r_score="0.797"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E587984" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587984" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="16400" e_stop="16437"/>
          <exon e_start="16514" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATGGTGAGTTCATCAATTTTCAGCTTTGTTGAGTTTAATAGTGGCAATTTTTGAGATTTAACCTGCTCTCTTCTTCTAGATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATA---CATACGGCTTGGGGATT--G-AATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGC--T-T-TGTGTTTAACC---TGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGT</genome_strand>
        <mrna_strand>GAGTGATGAAAAAGAAAGCGTTGGCGAGGAAGTAGATG............................................................................ATCAACCTGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACAGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACGGCTTGGGGGTTGTTATTTGGGCAGTTTCTTCTCATAATAGAGTATGTTGGAGTTTTGTATGTTTTGCTTTGTGTGTGTTTAACCTGATGAGGAGACATATTGACGTTTGGTGCAACTTTGCATATGAAGAGAGTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336050" ref_strand="+" ref_description="SGN-E336050 [cTOE-12-E19]">
      <seq>gattatgaatatgaggagcttctgggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagagtacgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgaagtttggtgcgactttgcttatgaagaaagttggtttaaatttactttgttgggatatgttatcttggttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16285" stop="19859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16585" g_stop="16602" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17104" g_stop="17249" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="164" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="307" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="393" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19313" g_stop="19559" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="640" r_length="247" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E336050" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16585" e_stop="16602"/>
          <exon e_start="17104" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGAATATGAGGAGGTATTTTCTTAATTCTTTGTATTTTCTGCATATACCTGATAAGAGATTTTAGAATGCACTCGATTGTCCAAGATAATATGTAGCTACCCTCACATGGACTTGAGCTGAGTAATAATGCATCACTACAACCTCACAGAATCAGTCCAGGCATACAATTAAAAACCTTGTGTAGTTTGTGTAACCAAGTCACATACGTTTCAAAAAGTTGTCAAATGTTTCGTACTTCGATGGTTATCTTATGCTTATGTAAACTCTTTGATGGATGACTAAATAACCCTATCATTTGTATACAGTTCTAATGTAAGGAATCTGTGCTAATCTAGACTCTAGGACTATATTGCCAAAGTGGTTCCATTGTACTTCTTCGTGCATAGGTTGCCTGCTTTATTTGCTATATGGAACTAGTAGCGTAATTCTGATTCTTGTTTCCTGATGCACACTATTTGTTTGATTTTAGGCTTTTTTAAAATGACAATTGAATTTCGCTTTTTGACTCTGCAGCTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTC</genome_strand>
        <mrna_strand>GATTATGAATATGAGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAAATTTACTTTGTTGGGATATGTTATCTTGGTTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548271" ref_strand="+" ref_description="SGN-E548271 [TUS-59-K16](-)">
      <seq>ggcagagtattcaatattctccgtgagaacaatcccgagcttgctggagataggcgaaggactgttatgagcccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagagtacgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgaagtttggtgcgactttgcttatgaagaaagttggtttagatttactttgttgggatatgttatcttgtttatttctataaaatgtggcttatacttgttttcctcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16810" stop="64540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17110" g_stop="17249" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="283" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="369" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19313" g_stop="19591" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="648" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19592" i_stop="19959" i_length="368">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19960" g_stop="19990" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="679" r_length="31" r_score="0.645"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E548271" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17110" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19591"/>
          <exon e_start="19960" e_stop="19990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTTATATTCAACTGCTAATCTTGTTGCACATGCAATGGCCGAATATAATGTTAGTCTCTCTTTCTGCAATGGGCCGCAAATATTAGCCTTTTGTGTGCAGTAGATGATCACGTAATCTTTGTAGTGATTTGCATCCAGAGGTCACTTTGGTTATGAAACTATGAAATGTAACTTTTGATGAGCATTAATAAAACATCCATAATTTTAAGGTAGAAAGTTGATTTCTTCTTTCACTTGTTCCTGTGAAGAATGTTTAGACAAATTAACGAATTATGAGCCTGTTTGTGGCCTAAATGTTTTCCTTGGTGAAAATCCTCTTCTTTTTTTTTCCTCTCAAAGTTGAGGTTGGTTGATAAAGCTTTTAGATTAAGAAAAAACATTTTAAAATAGAAATTGAAAATA</genome_strand>
        <mrna_strand>GGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGCCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTT................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442223" ref_strand="+" ref_description="SGN-E442223 [cSTA-32-I22]">
      <seq>gagagacagttatgagaccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatacgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaggagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggttttgttgctcgtgttggacgtcggaaagctgggacctgatacagcttggggattgttatttgggcagtttcttctcataatagagtatgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgacgtttggtgcaactttgcttatgaagagagttggtttagatttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16867" stop="19827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17165" g_stop="17249" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="228" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19313" g_stop="19527" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="535" r_length="221" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="549"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E442223" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17165" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACA---TACGGCTTGGGGATT--G-AATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTT</genome_strand>
        <mrna_strand>GAGAGACAGTTATGAGACCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATACGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACAGCTTGGGGATTGTTATTTGGGCAGTTTCTTCTCATAATAGAGTATGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGACGTTTGGTGCAACTTTGCTTATGAAGAGAGTTGGTTTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443826" ref_strand="+" ref_description="SGN-E443826 [cSTA-40-O5]">
      <seq>gagagacagttatgagaccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatacgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaggagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggttttgttgctcgtgttggacgtcggaaagctgggacctgatacagcttggggattgttatttgggcagtttcttctcataatagagtatgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgacgtttggtgcaactttgcttatgaagagagttggtttagatttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16867" stop="19827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17165" g_stop="17249" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="228" r_length="143" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="314" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19313" g_stop="19527" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="535" r_length="221" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="549"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E443826" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17165" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACA---TACGGCTTGGGGATT--G-AATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTT</genome_strand>
        <mrna_strand>GAGAGACAGTTATGAGACCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATACGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAGGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACAGCTTGGGGATTGTTATTTGGGCAGTTTCTTCTCATAATAGAGTATGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGACGTTTGGTGCAACTTTGCTTATGAAGAGAGTTGGTTTAGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356621" ref_strand="+" ref_description="SGN-E356621 [cTOS-21-P5]">
      <seq>ttatgaggccccctcaagttcttcgtgaaggcacaaagaaaactgtgtttgtgaatttcatggatctttgcaagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtccgaaagctgggacctgatacataccgcttggggaatgaatatcctggcataataaaataccgtggaagtttggaaggtttgccttggggttaacctgaagaaacctaatggaggttggtgcgactttgcctatgaagaaaggtgggttagaattaacttggtgggaaaaggtaacctggttaattccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16874" stop="19866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17174" g_stop="17249" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="219" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="305" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19313" g_stop="19565" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="558" r_length="253" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E356621" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17174" e_stop="17249"/>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGACGTAAGTTCTTTTCACTTGGTTTTCTTTATTGTAGCCTTTGCATCAATTACTGTTATCGACAAGTACTGTGTTTGCCAATTTCCTCACAACTTGGAATTGCTAGTGATGAGTAGTGACTACCATATTCACCCATCCCAATATAAATAGTCTTGTTTTACATGGCTCTGCCTTACTTGGCTAAGAATTGACATTAGTTGTCTTAACTTAGTTAAAATATGAATTTTTTGTAGAAACCTGCATATTTATTTGCCAAAATGATTTCACTAACTTAGATAACCCTGCTACTGCGTTCCTGAGACAGGTATTAACTCAATAGTGCCAATTTTGTTTTCGGACCAGTGCTGTAACATCTTCTTATCTATAGAAAGTGGAACCTTAAAACTTGGAACACCACTATGTGACGCTACAGAAATATGTGTATACTTTGTTTGGCTTTCAATCTAATAACCGCTACTGGAAATTATAAATTACTGTGGAAAACCAAGCAATGCATTTATAATAACCCAAGTTGGCTCAAACACCAAATATATATGGAATCTTGTGTACTCTGAAATTATCAATTTCTGTGGGAAACCACTCCGTGAATCATAAATACTCAAGCTGGCTCAAACATCAAACTGTTTATATGATGGAATATTGCTGCACTGAAGTAGCTTGTGTGTACCTCTAGCTACTGGCTCTTTCTCTATCTGAAATTTGTTTCACACAATTGTATTTGGTGTGAATATCAAGGTGTGAAATTGAAGAATATAGTTAGTTTATTATGATTGATTGAGCTTTTAGGTGCTTAGTTTGATTTTACAAAACTGATCATGGCTTAAAATCTAATTTTTGATTGAAGTTGGTCTCCGAAACTGTCATGCTGTATAATGTCTCATGATCGATAGTAATGTGTCATAGTGGTATCACTAATGAAAGGTTATCATTGGATTCCCTGTGAGTTTTGGTCAGTTTATCTTTCTGTATGTTAATACCTGATTGCACTGCTTGATTAATTGTTTCCTATTTACAGGATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAA</genome_strand>
        <mrna_strand>TTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCCGAAAGCTGGGACCTGATACATACCGCTTGGGGAATGAATATCCTGGCATAATAAAATACCGTGGAAGTTTGGAAGGTTTGCCTTGGGGTTAACCTGAAGAAACCTAATGGAGGTTGGTGCGACTTTGCCTATGAAGAAAGGTGGGTTAGAATTAACTTGGTGGGAAAAGGTAACCTGGTTAATTCCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348020" ref_strand="+" ref_description="SGN-E348020 [cTOF-31-M3]">
      <seq>aagacgatgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgacgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagagtacgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgaagtttggtgcgactttgcttatgaagaaagttggtttagatttactttgttgggatatgttatcttgtttatttctataaaatgtggcttatacttgttttcctcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17958" stop="19894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18262" g_stop="18404" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="148" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="234" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19313" g_stop="19591" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="513" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="514" polyA_stop="525"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E348020" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18262" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTT</genome_strand>
        <mrna_strand>GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587091" ref_strand="-" ref_description="SGN-E587091 [78204]">
      <seq>tgcataggcagcctgagcatgttatgactttcttgctggctgaaatggggactagtggatcacttgatgggcagcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatacgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacggcttggggattgttatttgggcagtttcttctcataatagagtatgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgatgtttggttcaactttgcttatgaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17964" stop="19811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18264" g_stop="18404" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="227" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19313" g_stop="19512" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="433" r_length="206" r_score="0.860"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E587091" ref_strand="-">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E587091" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="18264" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATA---CATACGGCTTGGGGATT--G-AATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAA</genome_strand>
        <mrna_strand>TGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGATGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATACGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACGGCTTGGGGATTGTTATTTGGGCAGTTTCTTCTCATAATAGAGTATGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGATGTTTGGTTCAACTTTGCTTATGAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E717799" ref_strand="+" ref_description="SGN-E717799 [FC02DB03]">
      <seq>gggcgattggcggccaatcggccgaattgcaaagattggtcatcaagggaagatttgctcctaagaattttgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcaaaagagaaccgtcttttcttcctccgatgcgagaagtgtggctctggaagatcagttgctcctatcaaggctggtttcgttgctcgtgttggacgtcggaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagagtacgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgaagtttggtgcgactttgcttatgaagaaagttggtttagatttactttgttgggatatgttatcttgtttatttctataaaatgtggcttataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18037" stop="64540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18338" g_stop="18404" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="96" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="182" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19313" g_stop="19577" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="447" r_length="265" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19578" i_stop="23753" i_length="4176">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23754" g_stop="23805" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="499" r_length="52" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E717799" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E717799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18338" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19577"/>
          <exon e_start="23754" e_stop="23805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTTATATTCAACTGCTAATCTTGTTGCACATGCAATGGCCGAATATAATGTTAGTCTCTCTTTCTGCAATGGGCCGCAAATATTAGCCTTTTGTGTGCAGTAGATGATCACGTAATCTTTGTAGTGATTTGCATCCAGAGGTCACTTTGGTTATGAAACTATGAAATGTAACTTTTGATGAGCATTAATAAAACATCCATAATTTTAAGGTAGAAAGTTGATTTCTTCTTTCACTTGTTCCTGTGAAGAATGTTTAGACAAATTAACGAATTATGAGCCTGTTTGTGGCCTAAATGTTTTCCTTGGTGAAAATCCTCTTCTTTTTTTTTCCTCTCAAAGTTGAGGTTGGTTGATAAAGCTTTTAGATTAAGAAAAAACATTTTAAAATAGAAATTGAAAATAAAAATTAACTTGATAATAGAGTTTGAGATTTATTGAAAATAATTTTTCTACTATGTCCATAGAATTGTGAAGATGAAAACCAGTGAAACGTACCAATTCAATCATAATTTTTCTACTATCTTCTTCAAATTGACTCGTGGGATCACACTAACCATGTTATAGCTGATGGCTTGATAATAGAGTTGTGAAGAATAGTCAGTCAGAAGATGAAACATCAATGAAACCTACCAATTCAACCACCGACGTCCGATAAACGTTTCACATTTACTGTCTAATTATTGCAAACGCATATACCCTTATCAATAAAAAATGACACATATATTCAAGTCCAAGAGAAAGTCTTAACACGTAGCTATTTCGACTAGTTGAAAGATATTTTTGACCCTTTCTTAATACTTAACGACAGACTGATTTAATCAAGTCCAATAGAGTTTTTATAAATCTGTTTGTGAGACTCAGAATTATCCAAACTATGATTCATACTTTAAAATGACTTTATAATAGTGTTTATTTGACGATTTGAGTTAAGAGTCAGCGGAAAATAACTTCTCTATCTTCATCACACACTTAATAATGGAGTTCTGAAGAAAAGTCATGTTGGAAAATCAATGATAATGTGCCAATTCAACAACCATCATATGCATGCATTCATATTTGTAAAAAGTAAAAATTTATGCCTCCCATCTGATTTCGTACGTCTAATTAATGCCATCGCATGTACCCTCCTCGTAAATAAATTTTACAAACCAAAAACAACCAAGTCCAATAGAAAAGTCTTTAACACGTTGTTGGAGAGAGCTATTTCGAATAGTTGACGAATAATTTTGATCTCAGTCACTGGTCAGTTTCCTAAGGTTCAAGACAAACTTAAAGGTAGCAGCATCTTTCAAAATTTTCAATAATGTTTCTTTAGAGTTGTGAAGTATAGTCATGTTGAAAAATCAACAAAAACGTACCAATTAAACAACCCACATGCATGCATTCATATTTTTGACATTTATTGCTCCCATATGTCGTCATCGTATGTGACATACGGTATGACTAATTAATGCAAATCTCATATGCATTAAATAATTTTTTTTTAAAAAAGACATATATATTCAAGTCCAAGAGGAAGTCTAAAACACGTTGCTGGAGACTCAGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATGGTAAGTTAAATTTTTATCGATTTTTTACTACTCCTTATTTATCTATTAATTGCCACTGCTAATATCTTCTGTTGTGATAGATCCATACATGAGTTAATATCTTTCGGATCACTCAACTAAGGAGTTTTATCATAAAAATTTACTCAACTATCATTTTTACTTTAAAAGTCATTTCACTATAAGAACTCGAGGCAGTATTAGATTAGAATTAGGGGTGTCAAAAATGAATTCAAACATACGTAATTCGCCCAATTCAATCTCCAATTTCAATTCGTTTTAAATTTTTTTATTAAGATATGTTCTTATATTGAAAGTATGAATTATTATCTATTTAATATCTTTTAGGACTTATCTATCAGTTTGTTTCTTTTTTTTTTAACAAAAAATTCTTGAGCGAAAATTCAAATTGTGATTATAAAAGTTAAATATCAATATGTTAAATTACTGAAATTAATAACGCTGGGCGGGTCAAGACCCAACCCTTTTTTAGCCCATTTAAGCCCAAAGTTAACTTGGGCGGGTCAAGACCCAACCCCATTTCTATTCAACCATTGTAATATTTTCAAGAGAAAATTGTATATAATAGCAAAACTAATAACCTAAAATAAATGGAGTAGCTAGGGTTTGATTTAATTGTGCTCCATAGCAAACGTTTGCAAAAAATTGCCAGGTGTCTCTCTCCCAAATATCTCGCTCGCCACTCTCCTCTAGTCTCGCTCTCGCTTCCTCTCTTTTTATACAAACAGAAGTGTATAAAAATTGTTTCTAATTGTATAAAGCAGAGAAAATTGTATCAATACATATATTTTTGTTCCCCTCTGTCCCTTTTTCCAGATCTCGCTCGCCACCCTCGCCTTTCTCACTTATACAAACAGAAGCAAAATGTATAAATTGTGTTTCTGTTTGTATAAAGCGTGAGAAAATTGTATAAACACATGTAATTACATATATTTTCGTCCTATACACTTATAATTATACAATAAAAATACTACCCTGCCCACTTTCTTTTGTCTATCTCTCTTTCTCGTTTTATATAATTTTCAAATTGTATCTAATTTCTCTCTTTCTCGTTTTATACAATTCGATTCAATTGTATATTCCTTGTCAGGTCACTTTTGTCTTTCTCTCTTTCTCATTTTATACAAATTCAAATTGTATATAATTGTTCTATACACTTATAATAATACAATTCATTTTATACACTTCGTTTTCCAAGTTTCCTTCTCTTTCTTGTTTTATACACTTCGTTTTATACAATTTGCTTCAACTGTATATGTATAGCGAATTATATAGTTTCTATGTTTACTATGGAGCGCAATTATGCAAACTTTGCTATAGCATACAAATATGAATTTTTTATTTGCTATATGTAAAAATTGCTCTTTTTCGATTTCAATTCAACCCGCCCATTTGACACCCCTAATTAGAATAATCCCATGATTAAATTAAATCCATTCAGTGTAATTTCATGATTTCACAAACTAACATTTTTTTTCTCCATGTATGGTTTGCTATATTGAGTTGATTTTTGTCTTTTTGATTTCTTTTTCTTTTTAAATGCAGTTAGATGATTGATCACTTGAACTATTTATTTATTTATTTATTTAAAAATAAGCTTCAAGTATTTGAACAATTTAAGTAGGCTTAAATATATTTAAAGTTTAAGGTAATCTTTTGTCTAACAAAAAATTAGAAATACGCCGTGCTATCTAGAACCTTCGTAGTGGCACGGCACCTCAAAATTAAGAACAATTCTTTTATATATATTTTAATATTTAACTTGACTTATCAAATAAAATAAAAAAATCCTACAAAAATTTAAAGTTTAATTGTAAAGAAGATTTTTGTAGAGTTTTATTCTCAAATAATTCAAGTGAGAAAATAGCAAAAATGATGACAAAATTATTCTTCTCCTAATTAGTTTGAAGGCCACAAAAATATAATATTGTCCCCATGTTATCATCAACCTTGACCCAATTACACGAAATAAAATATTCCATAAAAACTTAAGGGTATAATAGGAAAAAGAATTTTTTTATGTAGAGTTCTAAACCTAATACAAGATTAGGTTGAAAACAATGAATCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATTAAAAAAAA</genome_strand>
        <mrna_strand>CAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237089" ref_strand="+" ref_description="SGN-E237089 [cLEL-7-D4](-)">
      <seq>tgaaggaatcctccgccgatatgtcaatgagtatgtcatttgcaatggctgtaaaagtccagatactatcctttcagaagaggtccgtcttttcttcctccgatccgagaagtgtggcactggaagctcagttgctcctatcaaggctggattcgttgctcgtgttggacgtcggaaagctgggacataatacatacggcttggggattgaatatcttgtcataatagagtacgttggagattttgtatgttttgctttgtgtttaacctgaggagacataatgaagtttggtgcgactttgcttatgaagaaagttggtttagatttaaaaaaaaataaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18079" stop="19828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18379" g_stop="18404" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18564" g_stop="18649" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="112" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19313" g_stop="19528" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="329" r_length="217" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="330" polyA_stop="345"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E237089" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18379" e_stop="18404"/>
          <exon e_start="18564" e_stop="18649"/>
          <exon e_start="19313" e_stop="19528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGGAATCCTCCGCCGATATGTCAGTAAGTTCCTGTTATCATTCCCTGATCTATATATGCAGGCTGCAGCTATTTGGAGATGGCATTCTTTCTGTTTTTATATATTTGTAAATAGTGCTTTGTATGCGCTTCTGCATCCTACGATCTAACAGCCTTTTCTCGGCAATGATCATTTTCTTTCAGATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAGGTATTTATTCAAATAGATGCACGATATCCATTAATTATCTGCATTCAACTTTCACTTTGTGAATGTAAAAGCATATCTTTGTAACTTGTGCTCCAATTTTTCTTCCATCAGACAAATAGAGAATAAGACTTTGTGGCAGGTCACTGTCTAGGTACTTTTAGGTTGTTTCCTTTGAATCCATGCGGTGCAGGGTGAGTGGGGTGTATAGAGTTCTCTCATTGGGCTTTTGTTGAGCAAGTGCTGGTGCTTCTAGATTCTAGGCTCTATTTCTGGGACATCCTCTGACAAAATGTGAAGTTTCAATTGCCAGATCATATATCTTAGTAATATGAGATCTCAGGCCTGCCCTTTATATTTCATTTATTTATACTGGGTTGCATTTTATTTTTTTTGATGAAGTTATACTGGGTTGCTTTTCTTGAATGAGTTGTTTATGCTTTTTTGATCATGTGCTATCTGTTCTACCCTCGAGAATGCTTTAGTATTCCCATCTCTTAACCAATCAAAAAACAAGAAGGCTTTAGTATTCCGTATCTCTTTCAATCCTGCCTGCTATTTACCTCAAAGAAAAGAGGAAAATGGCTGCTTTCTTATTTAGTGGATCACTTTTAAGAATTGTTTGGATTTTTCCAACTAGTTTTCGTTTTGTTTATTTTCTTGCAGTGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAG-TTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTA</genome_strand>
        <mrna_strand>TGAAGGAATCCTCCGCCGATATGTCA...............................................................................................................................................................ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAGAAGAGGTCCGTCTTTTCTTCCTCCGATCCGAGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCACTGGAAGCTCAGTTGCTCCTATCAAGGCTGGATTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACATAATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGATTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATAATGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236687" ref_strand="+" ref_description="SGN-E236687 [cLEL-7-D4](-)">
      <seq>gctcgtgttgaaacgtcgaaaagctgggacctgatacatacggcttggggattgaatatcttgtcataatagagtacgttggagttttgtatgttttgctttgtgtttaacctgaggagacatattgaagtttggtgcgactttgcttatgaagaaagttggtttagatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19069" stop="19828"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19358" g_stop="19528" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="173" polyA_stop="188"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E236687" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19358" e_stop="19528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCGTGTTG-GACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTA</genome_strand>
        <mrna_strand>GCTCGTGTTGAAACGTCGAAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319335" ref_strand="+" ref_description="SGN-E319335 [cTOB-15-E11]">
      <seq>agaacttaagagctccttttaatagtttaaggccaattttgatgcttttccaaatatatatatatagatatatgtaaatcgaatagttttcagttagtttccttcaatattaaaagcttcaagacaaacttgaaggtaacatctttcaaaagcttcaatcttttctcattaaattagatagtcgaaaataaattaattttatgtatttacttatgcatatatatatatataactttgtaatggatcgactgtgacaattattatcatatatatctaaacgcataattaatcgtatatattccgataagtggatgaatggaagtgtagtactaaacaacattacagagagagttaagtagaagtgctttatgataaagatggaatcaaagaaatcacagcgtctcagttggttggattgcttcttaggacccaaaaacagcaactccaagtggcttcaacagaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20832" stop="21902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21132" g_stop="21602" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E319335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21132" e_stop="21602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATG</genome_strand>
        <mrna_strand>AGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319526" ref_strand="+" ref_description="SGN-E319526 [cTOB-15-E10]">
      <seq>agaacttaagagctccttttaatagtttaaggccaattttgatgcttttccaaatatatatatatagatatatgtaaatcgaatagttttcagttagtttccttcaatattaaaagcttcaagacaaacttgaaggtaacatctttcaaaagcttcaatcttttctcattaaattagatagtcgaaaataaattaattttatgtatttacttatgcatatatatatatataactttgtaatggatcgactgtgacaattattatcatatatatctaaacgcataattaatcgtatatattccgataagtggatgaatggaagtgtagtactaaacaacattacagagagagttaagtagaagtgctttatgataaagatggaatcaaagaaatcacagcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20832" stop="21833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21132" g_stop="21533" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E319526" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319526" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21132" e_stop="21533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTC</genome_strand>
        <mrna_strand>AGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317869" ref_strand="+" ref_description="SGN-E317869 [cTOA-30-F18]">
      <seq>gaacttaagagctccttttaatagtttaaggccaattttgatgcttttccaaatatatatatatagatatatgtaaatcgaatagttttcagttagtttccttcaatattaaaagcttcaagacaaacttgaaggtaacatctttcaaaagcttcaatcttttctcattaaattagatagtcgaaaataaattaattttatgtatttacttatgcatatatatatatataactttgtaatggatcgactgtgacaattattatcatatatatctaaacgcataattaatcgtatatattccgataagtggatgaatggaagtgtagtactaaacaacattacagagagagttaagtagaagtgctttatgataaagatggaatcaaagaaatcacagcgtctcagttggttggattgcttcttaggacccaaaaacagcaactccaagtggcttcaacagaatcttgatgagatgaaccggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="20833" stop="21906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21133" g_stop="21602" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E317869" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21133" e_stop="21602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATG</genome_strand>
        <mrna_strand>GAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343956" ref_strand="+" ref_description="SGN-E343956 [cTOF-12-M13]">
      <seq>gcaattcctcttttagtccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacatttatctgaaaataatgatgttctcttgatgtacaatagttgaacatggattttcctgtaagatcattattgaagaattaattgcattgtttgggctaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31280" stop="30026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30980" g_stop="30319" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E343956" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30980" e_stop="30319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</genome_strand>
        <mrna_strand>GCAATTCCTCTTTTAGT-CCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228308" ref_strand="+" ref_description="SGN-E228308 [cLED-3-A21]">
      <seq>tgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacatttatctgaaaataatgatgttctcttgatgtacaatagttgaacatggattttcctgtaagatcattattgaagaattaattgcattgtttgggctannaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31049" stop="30029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30749" g_stop="30327" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="467"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E228308" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30749" e_stop="30327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAA</genome_strand>
        <mrna_strand>TGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTANN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461940" ref_strand="+" ref_description="SGN-E461940 [cPRO-10-G7]">
      <seq>ctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgctaagcttgctggatacgatattccagctgagagcaaaatcttggttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaatgactttagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgcattgccaattctcggcatcactttgggacggttggtgcaaaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattctaccattgtgatgaaaccaagatctttctgaagtttgtaacactatcagtaaagggattctgaagaaaactgtagaagtatggttgttattttgattgaaaagtgaaaaccttgcaagttttatagaaaacatttttcttcttggactaaaattcattataagatttacatttatctgaaaataataatgttctcttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31312" stop="30098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31012" g_stop="30388" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E461940" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E461940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31012" e_stop="30388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCT-AAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAG</genome_strand>
        <mrna_strand>CTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCTAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTGGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACTTTAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACGGTTGGTGCAAAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCTACCATTGTGATGAAACCAAGATCTTTCTGAAGTTTGTAACACTATCAGTAAAGGGATTCTGAAGAAAACTG-TAGAAGTATGGTTGTTATTTTGATTGAAAAGTGAAAACCTTGCAAGTTTTATAG----AAAACATTTTTCTTCTTGGACTAAAATTCATTATAAGATTTACATTTATCTGAAAATAATAATGTTCTCTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462920" ref_strand="+" ref_description="SGN-E462920 [cPRO-13-G23]">
      <seq>gcggaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtaactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgctaagcttgctggatacgatattccagctgagagcaaaatcttggttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaatgactttagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgcattgccaattctcggcatcactttgggacggttggtgcaaaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattctaccattgtgatgaaaccaagatctttctgaagtttgtaacactatcagtaaagggattctgaagaaaactgtagaagtatggttgttattttgattgaaaagtgaaaaccttgcaagttttatagaaaacatttttcttcttggactaaaattcattataagatttacatttatctgaaaataataatggtctcttgatgtacaatagccatggtacnaaatgaactttgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31430" stop="30088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31130" g_stop="30389" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E462920" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462920" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31130" e_stop="30389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCT-AAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATA</genome_strand>
        <mrna_strand>GCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTAACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCTAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTGGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACTTTAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACGGTTGGTGCAAAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCTACCATTGTGATGAAACCAAGATCTTTCTGAAGTTTGTAACACTATCAGTAAAGGGATTCTGAAGAAAACTG-TAGAAGTATGGTTGTTATTTTGATTGAAAAGTGAAAACCTTGCAAGTTTTATAG----AAAACATTTTTCTTCTTGGACTAAAATTCATTATAAGATTTACATTTATCTGAAAATAATAATGGTCTCTTGATGTACAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711968" ref_strand="+" ref_description="SGN-E711968 [FB03CB02]">
      <seq>gtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacatttatctgaaaataatgatgttctcttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31310" stop="30098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31010" g_stop="30389" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="622" r_length="622" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E711968" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31010" e_stop="30389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATA</genome_strand>
        <mrna_strand>GTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E695383" ref_strand="+" ref_description="SGN-E695383 [LH_Ea06G05](-)">
      <seq>attgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaattagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcctaagcttccgtaccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcgaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggttagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaggccaatggcaacgacttcagattttttccttttggtgttggtaggaggagttgccccggaattatccttgcattgccaattcttggcatcactattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagcttgacccctcggagaaaggtggacagttcagtttacacattttgaagcattccaccattgtgatgaaaccaagatcattttgaactttataatactatcagttaaggggttttgaagaaaactgatagaagtatggttgttattttgattgaaaagtgaaaaccttgtaagttttatagaaaaaggacatttttttttttggactaaaatgcattaccctttaaagggttatctgaaaataataatgttctctgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32553" stop="30137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32253" g_stop="32229" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30401" g_length="768"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="794" r_length="769" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="796" polyA_stop="814"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E695383" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E695383" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32253" e_stop="32229"/>
          <exon e_start="31168" e_stop="30401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCT-AAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCT</genome_strand>
        <mrna_strand>ATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAATTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCTAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCGAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGTTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAGGCCAATGGCAACGACTTCAGATTTTTTCCTTTTGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACTATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTTGACCCCTCGGAGAAAGGTGGACAGTTCAGTTTACACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTTTGAACTTTATAATACTATCAGTTAAGGGGTTTTGAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGTGAAAACCTTGTAAGTTTTATAGAAAAAGGACATTTTTTTTTTTGGACTAAAATGCATTACCCTTTAAAGGGTTATCTGAAAATAATAATGTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354364" ref_strand="+" ref_description="SGN-E354364 [cTOS-17-K9]">
      <seq>gaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacatttatctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31254" stop="30112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30954" g_stop="30408" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E354364" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30954" e_stop="30408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGAT</genome_strand>
        <mrna_strand>GAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221241" ref_strand="+" ref_description="SGN-E221241 [cLEL-22-A13](-)">
      <seq>tccagctgagagcaaaatcttagttaacgcttggtggctagctaacaacnccgcccactggaagaaacctgaagagttcagacntgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31218" stop="30123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30918" g_stop="30408" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E221241" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E221241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30918" e_stop="30408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGAT</genome_strand>
        <mrna_strand>TCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACNCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACNTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712829" ref_strand="+" ref_description="SGN-E712829 [FB05DG06]">
      <seq>taacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaaggttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaacatttttcttcttggactcaaattcattacaagatttacatttatctgaaaaaaaaaaaaaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32566" stop="30112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32266" g_stop="32229" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30416" g_length="753"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="790" r_length="752" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="791" polyA_stop="802"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E712829" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32266" e_stop="32229"/>
          <exon e_start="31168" e_stop="30416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAA</genome_strand>
        <mrna_strand>TAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG-GTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E216330" ref_strand="+" ref_description="SGN-E216330 [cLEL-13-C8](-)">
      <seq>aacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctaaactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaaccttgtaagttttatagaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31111" stop="30165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30811" g_stop="30466" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="346" r_length="346" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E216330" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216330" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30811" e_stop="30466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAAC</genome_strand>
        <mrna_strand>AACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576290" ref_strand="-" ref_description="SGN-E576290 [59485]">
      <seq>gaagggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaattgaaacaaacattatggtcaattgaatgggttatcgcggaactagtcaaccatcctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtacaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttcgactccggatggcaattcctctcttggtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttggtcaacgcttggtggctagctaacaaccccgctcactggaagaaaccagaagagttcagacccgagaggttctttgaagaggagaagcacgttgaggccaatggcaatgactttagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgctttgccaattctcggcatcactttgggacgtttggtgcagaactttgagatgttgcctcctccagggcaatcgaaactcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattctaccattgtgatgaaaccaagatctttctgaagtttgtaacactatcagtaaagggctttctgaagaaaactgatagaagtatggttgttattttgattgaaaagtgaaaaccttgcaagttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32587" stop="30180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32287" g_stop="32229" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30480" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="751" r_length="692" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E576290" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576290" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32287" e_stop="32229"/>
          <exon e_start="31168" e_stop="30480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAAC-AACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGG-GTTCT-AAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTT</genome_strand>
        <mrna_strand>GAAGGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTGAAACAAACATTATGGTCAATTGAATGGGTTATCGCGGAACTAGTCAACCATCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTACAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTCGACTCCGGATGGCAATTCCTCTCTTGGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTGGTCAACGCTTGGTGGCTAGCTAACAACCCCGCTCACTGGAAGAAACCAGAAGAGTTCAGACCCGAGAGGTTCTTTGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACTTTAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCTTTGCCAATTCTCGGCATCACTTTGGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAATCGAAACTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCTACCATTGTGATGAAACCAAGATCTTTCTGAAGTTTGTAACACTATCAGTAAAGGGCTTTCTGAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGTGAAAACCTTGCAAGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242269" ref_strand="+" ref_description="SGN-E242269 [cLED-37-P6]">
      <seq>gatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgcagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggggttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatcattctagactttgtaatactatcagttgaggggttctaagaaaactgatagaagtatggttgttattttgattgaaaagggaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31223" stop="30189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30923" g_stop="30489" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E242269" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30923" e_stop="30489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCT</genome_strand>
        <mrna_strand>GATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGCAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGGGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAGACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256735" ref_strand="+" ref_description="SGN-E256735 [cLEG-40-J6]">
      <seq>aaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32586" stop="30345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32286" g_stop="32229" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30645" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="582" r_length="524" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E256735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32286" e_stop="32229"/>
          <exon e_start="31168" e_stop="30645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACC</genome_strand>
        <mrna_strand>AAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305666" ref_strand="+" ref_description="SGN-E305666 [cLEX-14-H6]">
      <seq>aattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31446" stop="30347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31146" g_stop="30647" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E305666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31146" e_stop="30647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACA</genome_strand>
        <mrna_strand>AATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263772" ref_strand="+" ref_description="SGN-E263772 [cLEG-60-B10]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaagagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30652" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="716" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E263772" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCT</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAAGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621207" ref_strand="+" ref_description="SGN-E621207 [71914]">
      <seq>cccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcgggggttgggaaggaggagttgccccggaattatccttgcattgccaattctcggcatcactttgggacgtttggtgcagaactttgagatgttgcctcctccaggacagtcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31334" stop="30355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31034" g_stop="30653" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E621207" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31034" e_stop="30653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTC-GGTGTT-GGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGC</genome_strand>
        <mrna_strand>CCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGGGGTTGGGAAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGACAGTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209213" ref_strand="+" ref_description="SGN-E209213 [cLEC-38-N20]">
      <seq>ctcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttaattaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31297" stop="30377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30997" g_stop="30677" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E209213" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30997" e_stop="30677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGT</genome_strand>
        <mrna_strand>CTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAATTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704863" ref_strand="+" ref_description="SGN-E704863 [FA25BH12]">
      <seq>ataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcacatttcttcctttcggtgttggcaggaggagttgccccggaattatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33626" stop="30434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33326" g_stop="33089" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="372" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30734" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="807" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E704863" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33326" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCC</genome_strand>
        <mrna_strand>ATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCACATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264399" ref_strand="+" ref_description="SGN-E264399 [cLEG-67-M2]">
      <seq>gagagatcaacgaggataacgttctttacattgttgagaacattaatgtttctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32582" stop="30437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32282" g_stop="32229" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30737" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="486" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E264399" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32282" e_stop="32229"/>
          <exon e_start="31168" e_stop="30737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTA</genome_strand>
        <mrna_strand>GAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253794" ref_strand="+" ref_description="SGN-E253794 [cLEG-28-A10]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30758" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="610" r_length="411" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253794" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCA</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254527" ref_strand="+" ref_description="SGN-E254527 [cLEG-29-I22]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30781" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="587" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E254527" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254527" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAG</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256082" ref_strand="+" ref_description="SGN-E256082 [cLEG-37-M9]">
      <seq>aactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33507" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33207" g_stop="33089" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="253" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30845" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="577" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E256082" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33207" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</genome_strand>
        <mrna_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278600" ref_strand="+" ref_description="SGN-E278600 [cLER-10-B24]">
      <seq>aagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32646" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32346" g_stop="32229" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30845" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="442" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E278600" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32346" e_stop="32229"/>
          <exon e_start="31168" e_stop="30845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</genome_strand>
        <mrna_strand>AAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276214" ref_strand="+" ref_description="SGN-E276214 [cLEN-21-B6]">
      <seq>ctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32559" stop="30545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32259" g_stop="32229" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31168" g_stop="30845" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="355" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E276214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32259" e_stop="32229"/>
          <exon e_start="31168" e_stop="30845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</genome_strand>
        <mrna_strand>CTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254350" ref_strand="+" ref_description="SGN-E254350 [cLEG-27-C21]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30848" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="520" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E254350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTG</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256144" ref_strand="+" ref_description="SGN-E256144 [cLEG-37-A15]">
      <seq>caactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33508" stop="30549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33208" g_stop="33089" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="254" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30849" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="574" r_length="320" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E256144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33208" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCT</genome_strand>
        <mrna_strand>CAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365721" ref_strand="+" ref_description="SGN-E365721 [cLPT-8-I16]">
      <seq>tttatatctgttcataaacttcttggtttgttgattattcagctgatatgcttaattcttgtcatgaacagcaatcgaaacaacgttgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatatttcagctgagagcaaaatcttggtcaacgcttggtggttagctaacaaccccgcccactggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="31539" stop="30555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31239" g_stop="30855" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E365721" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31239" e_stop="30855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAG</genome_strand>
        <mrna_strand>TTTATATCTGTTCATAAACTTCTTGGTTTGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACGTTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTTCAGCTGAGAGCAAAATCTTGGTCAACGCTTGGTGGTTAGCTAACAACCCCGCCCACTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253071" ref_strand="+" ref_description="SGN-E253071 [cLEG-25-K10]">
      <seq>aactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacattcaaaagaaactccgagacgagattgatacagttcttggaccatgagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaatgagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33507" stop="30560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33207" g_stop="33089" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="253" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30860" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="562" r_length="309" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253071" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33207" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACT</genome_strand>
        <mrna_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATTCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCATGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAATGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257219" ref_strand="+" ref_description="SGN-E257219 [cLEG-46-L20]">
      <seq>agtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33708" stop="30586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33408" g_stop="33089" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="454" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30886" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="737" r_length="283" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E257219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33408" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTG</genome_strand>
        <mrna_strand>AGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259058" ref_strand="+" ref_description="SGN-E259058 [cLEG-41-E12]">
      <seq>aactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33507" stop="30597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33207" g_stop="33089" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="253" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30897" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="525" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E259058" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33207" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTA</genome_strand>
        <mrna_strand>AACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691543" ref_strand="+" ref_description="SGN-E691543 [LH_Ea06G05]">
      <seq>ccgttaaaggggggtgggagtctgaggctgccagtgtagttccttatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgtaaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactatttaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcctaagcttccgtaccttcaggctgtgatcaaagagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcgaagcttgctggatacgatatcccagctgagagcaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39813" stop="30600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33441" g_stop="33089" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="486" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30900" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="755" r_length="269" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E691543" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33441" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATC</genome_strand>
        <mrna_strand>CCGT-TAAAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTCCTTATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTTAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCTAAGCTTCCGTACCTTCAGGCTGTGATCAAAGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCGAAGCTTGCTGGATACGATATCCCAGCTGAGAGCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259063" ref_strand="+" ref_description="SGN-E259063 [cLEG-41-G12]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30600"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30900" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="468" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E259063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATC</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255061" ref_strand="+" ref_description="SGN-E255061 [cLEG-31-G14]">
      <seq>atttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgaggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagctttcataccttgaggctgtgatcaaggagactcttacactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="30611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33153" g_stop="33089" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="199" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30911" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="457" r_length="258" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E255061" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33153" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTG</genome_strand>
        <mrna_strand>ATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGAGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTTCATACCTTGAGGCTGTGATCAAGGAGACTCTTACACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704269" ref_strand="+" ref_description="SGN-E704269 [FA23DC09]">
      <seq>atggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33825" stop="30616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33525" g_stop="33089" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="571" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30916" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="824" r_length="253" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E704269" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>824</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33525" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCC</genome_strand>
        <mrna_strand>ATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547903" ref_strand="+" ref_description="SGN-E547903 [TUS-56-C10]">
      <seq>tttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtccacacatgaaatttcatgatgcaaagcttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33821" stop="30628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33521" g_stop="33089" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="567" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="30928" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="807" r_length="240" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E547903" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E547903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33521" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="30928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGG</genome_strand>
        <mrna_strand>TTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGT-CCACACATGAAATTTCATGATGCAAAGCTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321113" ref_strand="+" ref_description="SGN-E321113 [cTOB-13-C12]">
      <seq>gtagttgagagatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaagctgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33705" stop="30706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33405" g_stop="33089" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="452" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31006" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="615" r_length="163" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33405" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGTTGAG-GATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGAT</genome_strand>
        <mrna_strand>GTAGTTGAGAGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAAGCTGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245514" ref_strand="+" ref_description="SGN-E245514 [cLEF-43-P13]">
      <seq>cagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33709" stop="30718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33409" g_stop="33089" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="455" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31018" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="606" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E245514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33409" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</genome_strand>
        <mrna_strand>CAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249295" ref_strand="+" ref_description="SGN-E249295 [cLEF-50-P2]">
      <seq>taacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccangagtgcaagtgagtgagccagacatgcccaagcttccatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33622" stop="30718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33322" g_stop="33089" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="368" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31018" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="519" r_length="151" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E249295" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33322" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</genome_strand>
        <mrna_strand>TAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCANGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201097" ref_strand="+" ref_description="SGN-E201097 [cLEC-10-A6]">
      <seq>gagtgaagatgatcccctttttgttaagcttanggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33586" stop="30718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33286" g_stop="33089" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="332" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31018" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="483" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E201097" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33286" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</genome_strand>
        <mrna_strand>GAGTGAAGATGATCCCCTTTTTGTTAAGCTTANGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309769" ref_strand="+" ref_description="SGN-E309769 [cLEY-26-J16]">
      <seq>ctcgtgccgaattcggcacgaggaacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33621" stop="30744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33310" g_stop="33089" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="256" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="390" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31044" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="515" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E309769" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33310" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAG</genome_strand>
        <mrna_strand>GATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253209" ref_strand="+" ref_description="SGN-E253209 [cLEG-26-P13]">
      <seq>ggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33728" stop="30776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33428" g_stop="33089" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="340" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="474" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31076" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="567" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253209" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33428" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATA</genome_strand>
        <mrna_strand>GGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266011" ref_strand="+" ref_description="SGN-E266011 [cLEI-6-F24]">
      <seq>cagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33709" stop="30777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33409" g_stop="33089" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="455" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31077" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="547" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E266011" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33409" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGAT</genome_strand>
        <mrna_strand>CAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602977" ref_strand="+" ref_description="SGN-E602977 [56055]">
      <seq>gtttatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaatcctgaatctgctactaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcctctttttgtaaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagagggtacttgaagatttgcaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaagggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattatggtcaattgagtggggtatcgcggaactagttcaagcagcctcacatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33813" stop="30802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33513" g_stop="33089" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="559" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31102" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="627" r_length="68" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E602977" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33513" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAG-TCAACCACCCTCACATCCA</genome_strand>
        <mrna_strand>GTTTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAATCCTGAATCTGCTACTAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCTCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGGTACTTGAAGATTTGCAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTATGGTCAATTGAGTGGGGTATCGCGGAACTAGTTCAAGCAGCCTCACATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253507" ref_strand="+" ref_description="SGN-E253507 [cLEG-24-C6]">
      <seq>gccagtgtagttgaagatgtgaataaaaacccttaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttaaggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33711" stop="30806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33411" g_stop="33089" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="457" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31106" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="458" r_stop="520" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253507" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33411" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</genome_strand>
        <mrna_strand>GCCAGTGTAGTTGAAGATGTGAATAAAAACCCTTAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAAGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316663" ref_strand="+" ref_description="SGN-E316663 [cTOB-7-F7]">
      <seq>gatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcatagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33696" stop="30806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33396" g_stop="33089" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="442" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31168" g_stop="31106" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="505" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E316663" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33396" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
          <exon e_start="31168" e_stop="31106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATTTATTCTGTTATTTAATTAGAGGTAGTAGGTGAGAAGTTCCAAATAAGTGGATAGGTAACAGTTTGATATGGTTGGTGTACTTGCCAATTTCTTGGTGAGGGTTAGGTAGAGCAGGGTTGTTGGTGCACATTTCAAGGCATCTAACTTTCCTTGAGTAATGACTTGTGACGACAATTCATGTTAATTATGATCATGATAGTGGAGTAATGAACTAAAAGATCAACAAAAATGGATTTACGCAGGTTTCTGAGTTTTACTGAACTCACTGCTTTTGGTCTGTAGTGCATGCATATCAAAGAAGGATCTCTTATATATATATGAAGAAATCATACTCATTTTGAACTCACTAATTGTAGATCTTGGAATTACCTCTGAGCTTTGATGAGGACGATCTCGAATAAAACTAGCATTTAGAATCGTTGAAGCACGTTTAGTTGTTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</genome_strand>
        <mrna_strand>GATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCATAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316965" ref_strand="+" ref_description="SGN-E316965 [cTOA-27-F10]">
      <seq>aaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctggtatgtttcaaaatgactctcgatatactttgttctagtttggtttaaagtatgggattctccttgtgaaaatgttgaaaaataactttttaacaatacttggtttggtatctatccttgtgagttccttttggataagagtaacagaatggtgtgtttgactggtaaaccaagaataacaatgtcaacctccacatattttgtttttgtacggtatttggatttgcaccaaagtttaagtaacttattatcagttgttacatgatttttaatcatcctagtcagaaactaagaaaagtaatttataagtgaatgcatttgggtggggaacagcaactgaaacaattgctaaagaaaaggaagaatccacccaaggggctcgcgtgtggtcagctagttagtgagacaatcactttgcacggggatgatgaatagctggtcttagaggatgattaactgcactaggactgatacatggcccagattcctttgangggcagcagtgggggaagtttccggaatgccgaaagcctgatggatcccttttccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="32661" stop="31377"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32361" g_stop="31677" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="686" r_length="686" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E316965" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32361" e_stop="31677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGT-GGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATT</genome_strand>
        <mrna_strand>AAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGANGGGCAGCAGTGGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707657" ref_strand="+" ref_description="SGN-E707657 [FA33CE04]">
      <seq>cttaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacatttgtgagaacattaatgttgctgcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34103" stop="31925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33803" g_stop="33089" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="716" r_stop="849" r_length="134" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E707657" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33803" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</genome_strand>
        <mrna_strand>CTTAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTTGTGAGAACATTAATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202216" ref_strand="+" ref_description="SGN-E202216 [cLEC-7-J20]">
      <seq>gaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttaaggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33691" stop="31925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33391" g_stop="33089" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="437" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E202216" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33391" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</genome_strand>
        <mrna_strand>GAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAAGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253208" ref_strand="+" ref_description="SGN-E253208 [cLEG-26-P11]">
      <seq>aagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33690" stop="31925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33390" g_stop="33089" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="436" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253208" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33390" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</genome_strand>
        <mrna_strand>AAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263536" ref_strand="+" ref_description="SGN-E263536 [cLEG-60-E16]">
      <seq>tatttgtaaggaggttacggagaagaggctgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaccgaggataacgttctttacattgttgagaaccttaatgtagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33453" stop="31929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33154" g_stop="33089" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32229" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="200" r_length="134" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E263536" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33154" e_stop="33089"/>
          <exon e_start="32362" e_stop="32229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG</genome_strand>
        <mrna_strand>TATTTGTAAGGAGGTTACGGAGAAGAGGCTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCACCGAGGATAACGTTCTTTACATTGTTGAGAACCTTAATGTAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460456" ref_strand="+" ref_description="SGN-E460456 [cPRO-31-I10]">
      <seq>gaagggtcaagatatggtttttactgtttatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaatcctgaatctgctactaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcctctttttgtaaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagagggtacttgaagatttgcaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaagggagagatncacgaggataacgttctttacattgttgagaacatttaatgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33838" stop="31931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33538" g_stop="33089" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32231" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="582" r_length="132" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E460456" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33538" e_stop="33089"/>
          <exon e_start="32362" e_stop="32231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGC</genome_strand>
        <mrna_strand>GAAGGGTCAAGATATGGTTTTTACTGTTTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAATCCTGAATCTGCTACTAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCTCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGGTACTTGAAGATTTGCAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAGGGAGAGATNCACGAGGATAACGTTCTTTACATTGTTGAGAACATTTAATGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208327" ref_strand="+" ref_description="SGN-E208327 [cLEC-37-G19]">
      <seq>tacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaagttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaaaggagagatcaacgaggataacgttctttacattgttgagaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33670" stop="31939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33370" g_stop="33089" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32239" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="406" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E208327" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33370" e_stop="33089"/>
          <exon e_start="32362" e_stop="32239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATT</genome_strand>
        <mrna_strand>TACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAAGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266370" ref_strand="+" ref_description="SGN-E266370 [cLEI-3-O23]">
      <seq>ttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33820" stop="31987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33520" g_stop="33089" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32287" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="508" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E266370" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33520" e_stop="33089"/>
          <exon e_start="32362" e_stop="32287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAG</genome_strand>
        <mrna_strand>TTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260607" ref_strand="+" ref_description="SGN-E260607 [cLEG-54-P14]">
      <seq>ccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaanggagaagaagttgaaactattcaaagactactttgttgatgaaagaaagaaacttgccaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34059" stop="31993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33759" g_stop="33089" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32362" g_stop="32293" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="673" r_stop="742" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E260607" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33759" e_stop="33089"/>
          <exon e_start="32362" e_stop="32293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAA-GGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTCACTTTATGTCCTTTATGCTCAGTTATTGATTTTCCCTAGTTTTATTCTCTTGATGTAAATGTGTAGGACATAGGATCAATGTAAAGAACCAATCTTTACTCAGTCTCTTTTATAAAGTAGGTGTTTTGTTGGTAAAGATCTTTGAATGTGGGGATCACATCACAAAGTGTTGTTTTTATTGTCTAGGATATAGGATCAATGTAAAGAACCAAACTTTACTCAGTCCTGCATCAATGAGAGATGGTGTGACTGGACTTCTATATGACTTAGGACAATTCTATATGAGGGGTGATGAGATAACTTTCGGGTTTAGTTAGGCTCTATATCTTATACTTTCTTATCATGGTATTTGAGCCAAGCTATTCTAATTCTTTGTTTACCCAATGTTGAGTCCTATATGTGTTGTCTATGCTCTAGATGGTAGGTCTGTGTGTGCAGGGTGTTGGAAGTCCCATTTGGTTTTGGATGGTGTAATTGAACTCTTCATATGATCTTGAGCAATTGAGCTAGCTTTTGAGCTTGAATTAAGCTTACGGACCATTTTCTTACTAGATTTTGACTAGAATAATTAGAGCTTTTGAAAGGATTTGCAGAAACCAAACGCCCCCTTTACCACATGGTGAAGTGTTGGAAATTCCTAATGCTGTAAGGTCTGGCTAGATGAAGTGCTTTGAGTTATGATTAGTTTGTAACATTTTTATTGCTTTGTGCAGGAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCT</genome_strand>
        <mrna_strand>CCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAANGGAGAAGAAGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300973" ref_strand="+" ref_description="SGN-E300973 [cLEW-8-D2]">
      <seq>ttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcaaagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaaactattcaaagactactttgttgatgaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33701" stop="32791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33401" g_stop="33091" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E300973" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33401" e_stop="33091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGA</genome_strand>
        <mrna_strand>TTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAAAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474271" ref_strand="+" ref_description="SGN-E474271 [cSTB-36-A17]">
      <seq>gttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgacagtgaacatgatcccctttttgttaaacttaaggctttgaatggtgtgaggagtatattggctcagagctttgattacaactatggtgattttatccctattttgaggcctttcttgataggatacttgaagattcgttacgaggtttaggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33657" stop="32833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33357" g_stop="33133" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E474271" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474271" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33357" e_stop="33133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAG</genome_strand>
        <mrna_strand>GTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGACAGTGAACATGATCCCCTTTTTGTTAAACTTAAGGCTTTGAATGGTGTGAGGAGTATATTGGCTCAGAGCTTTGATTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGATAGGATACTTGAAGATTCGTTACGAGGTTTAGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453840" ref_strand="+" ref_description="SGN-E453840 [cSTS-21-G8]">
      <seq>gtcttttctttgctacttttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggcgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggntgggagtctgaggctgctagtgtggttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcctctttttgtaaagcttaaggctttgaatggtgagaggagtagattggctcagagctttgagtacactatggtgattttatccctattttgaggcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34139" stop="32872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33839" g_stop="33172" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="669" r_length="669" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E453840" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33839" e_stop="33172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTTCTTTGCCA-TTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGG-TGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTC</genome_strand>
        <mrna_strand>GTCTTTTCTTTGCTACTTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGCGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGNTGGGAGTCTGAGGCTGCTAGTGTGGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCTCTTTTTGTAAAGCTTAAGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTAC-ACTATGGTGATTTTATCCCTATTTTGAGGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558812" ref_strand="+" ref_description="SGN-E558812 [18211]">
      <seq>ttttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggcgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctggaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtggttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttcttgaggaaaagattgcagcttatgatgtatcaataacatgtttaggattatgtttgataggagatttgaggagtgaagatgatcctctttttgtaaagcttagggctttgaatggtgagaggagtaaattggctcagagctttgagtaccactatggtgatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34124" stop="32892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33824" g_stop="33192" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E558812" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33824" e_stop="33192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCT-GAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTT-TTGAGGAAAAGATTGCAGCTTATGATGTAT-AATAACATGTTTAGGATTATGTTTGATAGGAGATTTGA-GAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTA</genome_strand>
        <mrna_strand>TTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGCGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTGGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTCTTGAGGAAAAGATTGCAGCTTATGATGTATCAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGGAGTGAAGATGATCCTCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAAATTGGCTCAGAGCTTTGAGTACCACTATGGTGATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406967" ref_strand="+" ref_description="SGN-E406967 [PPI-5-H19]">
      <seq>cccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttttttacaaataaggtggtgcagcagtatagaggagggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttanggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40278" stop="32900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33987" g_stop="33952" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.611"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33951" i_stop="33878" i_length="74">
            <donor d_prob="0.656" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33877" g_stop="33200" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="712" r_length="678" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E406967" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E406967" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33987" e_stop="33952"/>
          <exon e_start="33877" e_stop="33200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTAACCCCCATCTTTCTCCTCTATAAATACTCAGTTTTTTCTCATTCAGTATCAAAACATTTCTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGG</genome_strand>
        <mrna_strand>CCCATTTTCCTCA-ATTT-TTCTCCAAAAGAACTCA..........................................................................AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTTTTTACAAATAAGGTGGTGCAGCAGTATAGAGGAGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTANGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589992" ref_strand="+" ref_description="SGN-E589992 [43578]">
      <seq>tacccattctcctcaatttttccccaaaagaactcgaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgctattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaacctaactgagtatgctaaaaaatttggtgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctggaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggcaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgagaaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatacaggtgggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgagggaaacagattgcagcttatgatgtataataacatgtttaggattatgtctgatagaagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34177" stop="32912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33877" g_stop="33212" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="705" r_length="669" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E589992" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33877" e_stop="33212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCT-GAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGA-GGAAA-AGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGA</genome_strand>
        <mrna_strand>AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCTATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTAACTGAGTATGCTAAAAAATTTGGTGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGCAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGAAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATACAGGTGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGGAAACAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTCTGATAGAAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477856" ref_strand="+" ref_description="SGN-E477856 [cSTD-2-A5]">
      <seq>gttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttctttacaaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgcaacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaaacttanggctttgaatggtgaaaggagtagattggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34029" stop="32922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33729" g_stop="33222" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E477856" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33729" e_stop="33222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTC</genome_strand>
        <mrna_strand>GTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTCTTTACAAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCAACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAACTTANGGCTTTGAATGGTGAAAGGAGTAGATTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259611" ref_strand="+" ref_description="SGN-E259611 [cLEG-42-C15]">
      <seq>ccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttanggctttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34059" stop="32943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33759" g_stop="33243" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E259611" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33759" e_stop="33243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATG</genome_strand>
        <mrna_strand>CCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTANGGCTTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211262" ref_strand="+" ref_description="SGN-E211262 [cLEC-70-A16]">
      <seq>aaaaacaacacacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34202" stop="32956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33902" g_stop="33256" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E211262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33902" e_stop="33256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTT</genome_strand>
        <mrna_strand>AAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E213604" ref_strand="+" ref_description="SGN-E213604 [cLEC-76-I13]">
      <seq>ctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaagattatgtttgataggagatttgagagtgaagatgatcccctttttgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34103" stop="32961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33803" g_stop="33261" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="543" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E213604" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33803" e_stop="33261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTA</genome_strand>
        <mrna_strand>CTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAAGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322128" ref_strand="+" ref_description="SGN-E322128 [cTOB-24-K19]">
      <seq>ttttaacttcgctcaaaaacaacacacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgatacgagatttgagagtgaagatgatccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34216" stop="32967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33916" g_stop="33267" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E322128" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33916" e_stop="33267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTT</genome_strand>
        <mrna_strand>TTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATACGAGATTTGAGAGTGAAGATGATCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257738" ref_strand="+" ref_description="SGN-E257738 [cLEG-39-P19]">
      <seq>ggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgttcccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctgaggctgccagtgtatttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatccccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34043" stop="32967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33743" g_stop="33267" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E257738" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33743" e_stop="33267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTT</genome_strand>
        <mrna_strand>GGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTTCCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTATTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407959" ref_strand="+" ref_description="SGN-E407959 [PPI-9-O16]">
      <seq>caaaaatacccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttttttacaaataaggtggtgcagcagtatagaggagggtgggagtctgaggctgctagtgtagttgaggatgtgaagaanaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40292" stop="32969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33995" g_stop="33952" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.568"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33951" i_stop="33878" i_length="74">
            <donor d_prob="0.656" d_score="0.57"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33877" g_stop="33269" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="651" r_length="609" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E407959" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407959" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33995" e_stop="33952"/>
          <exon e_start="33877" e_stop="33269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTTCACCTAACCCCCATCTTTCTCCTCTATAAATACTCAGTTTTTTCTCATTCAGTATCAAAACATTTCTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCT</genome_strand>
        <mrna_strand>CAAAAATACCCATTTTCCTCA-ATTT-TTCTCCAAAAGAACTCA..........................................................................AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTTTTTACAAATAAGGTGGTGCAGCAGTATAGAGGAGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAANAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480999" ref_strand="+" ref_description="SGN-E480999 [cSTD-16-I1]">
      <seq>cccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttctttacaataaggtggtgcagcagtatagaggggggtggggagtctgaggctgctagtgtagttgaagatgtgaaagaaaacccctgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40278" stop="33073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33987" g_stop="33952" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.611"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33951" i_stop="33878" i_length="74">
            <donor d_prob="0.656" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33877" g_stop="33373" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="539" r_length="505" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E480999" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33987" e_stop="33952"/>
          <exon e_start="33877" e_stop="33373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTAACCCCCATCTTTCTCCTCTATAAATACTCAGTTTTTTCTCATTCAGTATCAAAACATTTCTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGT-GGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCT</genome_strand>
        <mrna_strand>CCCATTTTCCTCA-ATTT-TTCTCCAAAAGAACTCA..........................................................................AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTCTTTAC-AATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGGAGTCTGAGGCTGCTAGTGTAGTTGAAGATGTGAAAGAAAACCCCTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467593" ref_strand="+" ref_description="SGN-E467593 [cSTB-1-A24]">
      <seq>cccattttcctttatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaatttggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgtcgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttctttacaaataaggtggtgcagcagtatagaggggggtgggagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40273" stop="33117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35739" g_stop="35710" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.633"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35709" i_stop="33882" i_length="1828">
            <donor d_prob="0.940" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33881" g_stop="33417" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="495" r_length="464" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E467593" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E467593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35739" e_stop="35710"/>
          <exon e_start="33881" e_stop="33417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCGTC-TTTCTTCTTCTTCGAAACACCGTACCTGTTACTTCATTTCAAATTAGTCTAGCTTATTCTTAGAAGTGATGAATAAGAAAAAATGAAAAAATCTAACTAATTGTTGCTTCAAGATCTTACTTATGGAAGGGTTTATTGATTACGATGAACTTGAAACTTTTTTTAATTAAAAAATTTATAATTTTTTCATCTTAAATTACTTATTTTATTTGTATTATTTATTTATTTTGATAATGTGTTTTAAAAATTGAATGTGTTTTCTAGTTTTGAATCTGTTAGAGCTTGACTTTATTTTTATAATTTTGAATTAATCCTCAATTTTTTTCTATTTTTACCTTTCTAAAATTGTTTAAATAAAAAAAACAAAACAAATTTTAAAAAAAAACTCAAAATTTGAGTAGTTTTTGATGTGGCAATGAGGTGACGCTGATACGACAATGAAATGGTGCGTGTATAACACATTTGCCACAATTTTACTTATAATGTTAGAGTTGAAAAACAATCACTTGAAAGATGTTAAAGATTTTTAATTTATCTAAAAAAGAATGTGAATTCACTATAATTGAAAGCAATTGAATTTTAAAATTTTATTTTAATCCTTAATGAAATGATGGATTGCCAAGAAATAATCATAAACTATTTTGAATCATAAATATCAAATAAATAATTTAAGTTTTATATCAATAAAATTATATTACATAAATTATATAGCTTAAAAAAACACTCAAAATTAAAAGGTTTTTTGAATGTCGATGACAAATCCTTTTTAAGTTTTGGATGGTGACAATTCGTCTCTTTTGATACACTTGAATGAGAAATTCAATTGATTCACTCAATTTAAAAATAATTGAAAATTGAGTATGTATCTTTTAAATTTTGGATGGTGAAACTTATATTTTTATTTCCGTATAAACTTATCAAAAGAAGGCCAATTTTTTCACTCAATTTAAAGAAACTGAATGTCAATGACGAATTCATTAGATTTTGTACTAGCTTTGTCCCTTGTTTTGGTCAAGATATTTTCTATCGTTTATTTTACTTGTCGTTTTTATTAAATAAATTAAAAATAAAATAATTTATAATACTTATTGTTTTTAAAAATAATCAAGTTATTTCCTACTCCCGTAATTTTTGAAGGCTTGACATAGATAGACAATGATAAAAGAATCGTTTAGGTATTGATTTTTTAAACACCCTAAGTTTTTTTTTGTAAAATTATGTATGTTTAAGAGTTTGAAATATCATACAAATAAAAAATATTGTCATAAAAATAGGTAGATAGGTGATTTATTATCTAAACTATTATTAGGAATTTTCTTTGATCAATTAAATCTTAACGGATAAATTTAACCTGTGTCATGTGTCAAATCCAACACAAGAACTTGAGAAAATAGTGAGAAATTGAAAGAAGACATATCAGAAACTACATATTCAAATAAAATTTCAATTTCAAATCATGCTCAAATAGAATTAAAATAATAATACATTGAATTTATAAATTAATTATATAAAATCTTAGTGAGATTATTTTCCTTTTATGCAAATTATAATTTATTTATACATATAATAATTAGGTAATTCCTAAATTCAATCTTATCTTGATAATTAAATTAATCAAACATTAAATGATGTATGCACTTAGCAAAAGTCTTTTTATGAGCTCCACCAACCCACCCCACCCCCTCTCTCTTTCCTCTACCTAACCCCATCTACCACCCGTTAAACTTAACGCCGTTAACTCTTCACCTAACCCCCATCTTTCTCCTCTATAAATACTCAGTTTTTTCTCATTCAGTATCAAAACATTTCTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTG</genome_strand>
        <mrna_strand>CCCATTTTCCTTTATTTTTCTCCAAAAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAATTTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTCGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTCTTTACAAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253259" ref_strand="+" ref_description="SGN-E253259 [cLEG-26-M11]">
      <seq>caacacacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggtgggtgggagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34197" stop="33117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33897" g_stop="33417" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E253259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33897" e_stop="33417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTG</genome_strand>
        <mrna_strand>CAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305927" ref_strand="+" ref_description="SGN-E305927 [cLEY-17-L20]">
      <seq>ttttttttttaacttcgctcaaaaacaacacacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactgtaggaaaatgaggaggattatgactgtacccttttttactaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34224" stop="33153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33922" g_stop="33453" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E305927" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33922" e_stop="33453"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATA</genome_strand>
        <mrna_strand>TTTTTTTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGTAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338058" ref_strand="+" ref_description="SGN-E338058 [cTOE-14-J8]">
      <seq>acacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaactccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34193" stop="33157"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33893" g_stop="33457" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E338058" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33893" e_stop="33457"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACT</genome_strand>
        <mrna_strand>ACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAACTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311674" ref_strand="+" ref_description="SGN-E311674 [cLEZ-9-N15]">
      <seq>ttcgctcaaaaacaacacacatttattgtcaaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttttacacacacaaagggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34209" stop="33158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33909" g_stop="33458" g_length="452"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E311674" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33909" e_stop="33458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTAC</genome_strand>
        <mrna_strand>TTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAAGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E737944" ref_strand="+" ref_description="SGN-E737944 [LC11DB12]">
      <seq>ggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgctcctttgcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatctcctgaattagctaaagaagttcttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggaaagggtcaagatatggtttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34156" stop="33214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33856" g_stop="33514" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="345" r_length="345" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E737944" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33856" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCC-AAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTT-TTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACA</genome_strand>
        <mrna_strand>GGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCTTTGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTCTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGAAAGGGTCAAGATATGGTTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723774" ref_strand="+" ref_description="SGN-E723774 [FC21DD08]">
      <seq>tctaaacttcgctccaagcgatttaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccataaaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttacctgttgtgtcatctcctgaattacctaaagaagttttacacccacaaggggttgaatttggttcacgaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34104" stop="33217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33804" g_stop="33517" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E723774" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33804" e_stop="33517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTT</genome_strand>
        <mrna_strand>TCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAAAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTACCTGTTGTGTCATCTCCTGAATTACCTAAAGAAGTTTTACACCCACAAGGGGTTGAATTTGGTTCACGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E426849" ref_strand="+" ref_description="SGN-E426849 [STM-47-C20]">
      <seq>cgccgttaaacttaacgccgttatttctctccacctaactcctctgtttccctcctataaatcctcacacttaacattcatgattcttcagcagtacaaaaataccctttctcctcaatttttccccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttaccgagtatgctaaaaagtttggtgatgtgttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40380" stop="33295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40080" g_stop="39946" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.874"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39945" i_stop="33883" i_length="6063">
            <donor d_prob="0.000" d_score="0.78"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33882" g_stop="33595" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="421" r_length="287" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E426849" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40080" e_stop="39946"/>
          <exon e_start="33882" e_stop="33595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTTAAACTTAACGCCGTTAACTCTCTTCACCTAACTCCTCTGTTTCCCTCCTATAAATCCTCACATTTAACATTCATGAAGCTTCAGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGAGTTGATTTCTTATATTATCACGACACTTTTCGATCACCTACTAATTTCTTTGCTTACATTGAGGAAGGGGTAGGGAGGCTGAAGTTACTGTATTTACACCAAATTATAGTTATTTATTATTCATCAAATAATCGATTTAGTATGTAAATACATGCTACTTAATCGTATAATTAAATGTGTTATAATATGAGTTCACTTAACTTAAATATAATGCAACATTGAATATGTTAAAGTAGTTGGTGTCTCTTGGTCCACAGTCGATTTGATCAGGTCTATGAAATTAAATGTGTGCATTTAAATCTTATTTATTCTTTACCTAATTTTTAATTGAACATTATTAAAATAAACTAATCTTGTTAGGTATTACATTGTTGTGGTACTTTATAAAAGAACGATATTGATGTCTCAACGTCTCCTATTACCATTGGTTAAATTACATAATTATTCATCTAACCATGGCTCTCTAGTGGAGACTAATCACCATCAATGTATCGATAACTTTCTAAATTTGGAAGTAAAAATTTATTTAAATACTCAAACTATAATTTGTTTCAAATTTTTAATCAAGCATTTAAACACATGATAATATATTTTTATGAAACATTTTCGACGATTCAAATTTTGAAAGGGAGAAGGCAAAATAGACGCTAATATTTCTGGTTCCTAAGCGCAGGACCAAGTCTTCACCCCTAGTACTAAAATTATTATTATTTAATTAATAAAATAATTTATCTTTTCTGACCAAAAAATATTTTAAAAAAAATTCAAAGATTGCTTTCAATTGAGATTGCAATGTAGAATTAAAAATGACATGTGATTAATTCAAGTATTCAATAGACGTTTGTGAATACGGATAAATATTTTTCAATCGAAAGTAACTAATACAAACATTTTATCGTGTGTTTAATAATAGAAAATAAGTCATAATTAAGCATCTAAATAGAGAAAATATACAAATATTCTTTAAAAAATTTCGTTAAATTTACTTTATACTTTAATTTTATAATAATTACTTACTTCCTAATCTCATTTCAAGTGAATTAACATTCACCCAAATAACTAATGTGGTAAATAAAAAATTTAAAAGTGAGTGAAAATTAAAAATAAAAAATAAATAGGCATTTTTTTTTCTTTCCAACCAATAAGGTTTCATCTTCCATCTCACACCCCATCACCTTTATCCACCAACAATCCTACCCTTTTCGTTCTTCGAACCCCCCACCCGCACCCCTCTTTCTCGTATTTCAAATCTCACTGCCACCCATCTTTCTTCTTCTTCAAGCTTCCCTCTCCGCCATCGTCTTTCTTCTTCTTCGAAACACCGTACCTGTTACTTCATTTCAAATTAGTCTAGCTTATTCTTAGAAGTGATGAATAAGAAAAAATGAAAAAATCTAACTAATTGTTGCTTCAAGATCTTACTTATGGAAGGGTTTATTGATTACGATGAACTTGAAACTTTTTTTAATTAAAAAATTTATAATTTTTTCATCTTAAATTACTTATTTTATTTGTATTATTTATTTATTTTGATAATGTGTTTTAAAAATTGAATGTGTTTTCTAGTTTTGAATCTGTTAGAGCTTGACTTTATTTTTATAATTTTGAATTAATCCTCAATTTTTTTCTATTTTTACCTTTCTAAAATTGTTTAAATAAAAAAAACAAAACAAATTTTAAAAAAAAACTCAAAATTTGAGTAGTTTTTGATGTGGCAATGAGGTGACGCTGATACGACAATGAAATGGTGCGTGTATAACACATTTGCCACAATTTTACTTATAATGTTAGAGTTGAAAAACAATCACTTGAAAGATGTTAAAGATTTTTAATTTATCTAAAAAAGAATGTGAATTCACTATAATTGAAAGCAATTGAATTTTAAAATTTTATTTTAATCCTTAATGAAATGATGGATTGCCAAGAAATAATCATAAACTATTTTGAATCATAAATATCAAATAAATAATTTAAGTTTTATATCAATAAAATTATATTACATAAATTATATAGCTTAAAAAAACACTCAAAATTAAAAGGTTTTTTGAATGTCGATGACAAATCCTTTTTAAGTTTTGGATGGTGACAATTCGTCTCTTTTGATACACTTGAATGAGAAATTCAATTGATTCACTCAATTTAAAAATAATTGAAAATTGAGTATGTATCTTTTAAATTTTGGATGGTGAAACTTATATTTTTATTTCCGTATAAACTTATCAAAAGAAGGCCAATTTTTTCACTCAATTTAAAGAAACTGAATGTCAATGACGAATTCATTAGATTTTGTACTAGCTTTGTCCCTTGTTTTGGTCAAGATATTTTCTATCGTTTATTTTACTTGTCGTTTTTATTAAATAAATTAAAAATAAAATAATTTATAATACTTATTGTTTTTAAAAATAATCAAGTTATTTCCTACTCCCGTAATTTTTGAAGGCTTGACATAGATAGACAATGATAAAAGAATCGTTTAGGTATTGATTTTTTAAACACCCTAAGTTTTTTTTTGTAAAATTATGTATGTTTAAGAGTTTGAAATATCATACAAATAAAAAATATTGTCATAAAAATAGGTAGATAGGTGATTTATTATCTAAACTATTATTAGGAATTTTCTTTGATCAATTAAATCTTAACGGATAAATTTAACCTGTGTCATGTGTCAAATCCAACACAAGAACTTGAGAAAATAGTGAGAAATTGAAAGAAGACATATCAGAAACTACATATTCAAATAAAATTTCAATTTCAAATCATGCTCAAATAGAATTAAAATAATAATACATTGAATTTATAAATTAATTATATAAAATCTTAGTGAGATTATTTTCCTTTTATGCAAATTATAATTTATTTATACATATAATAATTAGGTAATTCCTAAATTCAATCTTATCTTGATAATTAAATTAATCAAACATTAAATGATGTATGCACTTAGCAAAAGTCTTTTTATGAGCTCCACCAACCCACCCCACCCCCTCTCTCTTTCCTCTACCTAACCCCATCTACCACCCGTTAAACTTAACGCCGTTAACTCTTCACCTAACCCCCATCTTTCTCCTCTATAAATACTCAGTTTTTTCTCATTCAGTATCAAAACATTTCTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACA</genome_strand>
        <mrna_strand>CGCCGTTAAACTTAACGCCGTTATTTCTCTCCACCTAACTCCTCTGTTTCCCTCCTATAAATCCTCACACTTAACATTCATGATTCTTCAGCAGTACAAAAATACCC-TTTCTCCTCAATTTTTCCCCAAAAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAA-AAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACCGAGTATGCTAAAAAGTTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396281" ref_strand="+" ref_description="SGN-E396281 [TUS-47-K22](-)">
      <seq>atccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaattacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38049" stop="36736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37749" g_stop="37027" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E396281" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37749" e_stop="37027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGAGTTGAT</genome_strand>
        <mrna_strand>ATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343545" ref_strand="+" ref_description="SGN-E343545 [cTOF-19-D15]">
      <seq>tgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaattacttacgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37990" stop="36733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37690" g_stop="37443" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37442" i_stop="37297" i_length="146">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37296" g_stop="37033" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="512" r_length="264" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="513" polyA_stop="525"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E343545" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37690" e_stop="37443"/>
          <exon e_start="37296" e_stop="37033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGA</genome_strand>
        <mrna_strand>TGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAG..................................................................................................................................................CTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203316" ref_strand="+" ref_description="SGN-E203316 [cLEB-3-H9](-)">
      <seq>aaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttcttagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaattacttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37797" stop="36736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37497" g_stop="37033" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="465" polyA_stop="477"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E203316" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37497" e_stop="37033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGA</genome_strand>
        <mrna_strand>AAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTG-TTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTCTTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371493" ref_strand="+" ref_description="SGN-E371493 [TUS-29-D22](-)">
      <seq>atccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38049" stop="36743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37749" g_stop="37038" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E371493" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37749" e_stop="37038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACT</genome_strand>
        <mrna_strand>ATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370977" ref_strand="+" ref_description="SGN-E370977 [TUS-29-D21](-)">
      <seq>cagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcaataatttgacgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38018" stop="36743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37718" g_stop="37038" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E370977" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37718" e_stop="37038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACT</genome_strand>
        <mrna_strand>CAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCAATAATTTGACGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280268" ref_strand="+" ref_description="SGN-E280268 [cLER-1-C5](-)">
      <seq>acacatgaaccttcatgatgcaaagcttgctgcatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37903" stop="36743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37603" g_stop="37038" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E280268" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37603" e_stop="37038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACT</genome_strand>
        <mrna_strand>ACACATGAACCTTCATGATGCAAAGCTTGCTGCATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338012" ref_strand="-" ref_description="SGN-E338012 [cTOE-14-I10]">
      <seq>cgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaaaaaaaaaaaaaaaactcgagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37732" stop="36743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37432" g_stop="37044" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="390" polyA_stop="405"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E338012" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338012" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37432" e_stop="37044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAA</genome_strand>
        <mrna_strand>CGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233861" ref_strand="+" ref_description="SGN-E233861 [cLEL-8-H12](-)">
      <seq>ttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataagttttacctatatgatgtacaatggtaatttggctttctgtcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37676" stop="36763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37376" g_stop="37064" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="314" polyA_stop="346"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E233861" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37376" e_stop="37064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACA</genome_strand>
        <mrna_strand>TTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E691770" ref_strand="+" ref_description="SGN-E691770 [LH_Ea06P16]">
      <seq>cgtttcgaaacaacattgtggtcaattgagtggggtatcgcctatctagtcaaccaccctcacatccaaaagaaactccgtgacgagattgattcagttcttggaccaggagtgcaagtgagtgagccagacatgcttaagcttccgtaccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggttagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaggccaatggcaacgacttcagatttcttccttttggtgttggtaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtactactctcagttaattatgcctgtttgtttgtttgttcagaaaattttcttctcttttatgtttttataaaagtcttattagactaaattcattataagttttgcctttatgatgtatcttcttgatgtacaatggtaatttggctttctgacaattgcattattttgacgaaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38108" stop="36740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37811" g_stop="37091" g_length="721"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="722" r_length="721" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E691770" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E691770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37811" e_stop="37091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTG-TTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGAT</genome_strand>
        <mrna_strand>GTTTCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCCTATCTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATTCAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCTTAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGTTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTTGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTACTACTCTCAGTTAATTATGCCTGTTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTT-ATAAAAGTCTTATTAGACTAAATTCATTATAAGTTTTGCCTTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279850" ref_strand="+" ref_description="SGN-E279850 [cLER-8-N1]">
      <seq>atttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttttatgtttttcataaaagtcttattagactagattcattataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37723" stop="36807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37423" g_stop="37107" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E279850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37423" e_stop="37107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAA</genome_strand>
        <mrna_strand>ATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218100" ref_strand="+" ref_description="SGN-E218100 [cLEL-23-M1](-)">
      <seq>gaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggagaagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatactatcagttaattatgactgttgtttgtttgttcagaaaattttcttctcttctatgtttttcataaaagtcttattagactaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37756" stop="36817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37456" g_stop="37118" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="354"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E218100" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37456" e_stop="37118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAG</genome_strand>
        <mrna_strand>GAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGAAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTCTATGTTTTTCATAAAAGTCTTATTAGACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E690308" ref_strand="+" ref_description="SGN-E690308 [LH_Ea03C18]">
      <seq>cccttaagaggcttgcaaataccaagagtatggacagcaatcctttaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcagaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgattcagttcttggaccaggagtgcaagtgagtgagccagacatgcttaagcttccgtaccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggttagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaggccaatggcaacgacttcagatttcttccttttggtgttggtaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtactactctcagttaattatgcctgtttgtttgtttgttcaaaaattttcttctcttttatgtttttataaaagtcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38948" stop="36826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="141" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37811" g_stop="37126" g_length="686"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="826" r_length="685" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E690308" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E690308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTG-TTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTAT</genome_strand>
        <mrna_strand>GAGGCTTGCAAATACCAAGAGTATGGACAGCAATCCTTTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCAGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATTCAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCTTAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGTTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTTGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTACTACTCTCAGTTAATTATGCCTGTTTGTTTGTTTGTTCA-AAAATTTTCTTCTCTTTTATGTTTTT-ATAAAAGTCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465948" ref_strand="+" ref_description="SGN-E465948 [cPRO-22-B8]">
      <seq>caaccaccctcatatccaaaagaaactccgtgatgagattgatacagttcttggaccaggaatgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgcattgccaattctcggcatcactttgggacgtttggtgcagaactttgagatgttgcctcctccaggacagtcgaagctcgacacctcggagaaaggtggacagttcagtctacacattttgaagcattccaccattgtgatgaaaccaagatctttctaaactttgtaatgctatcaattaatcatgattgttgtttgtttgtgtaaacctttttagtttgacagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38062" stop="36850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37762" g_stop="37172" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="616" polyA_stop="626"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E465948" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E465948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37762" e_stop="37172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTT</genome_strand>
        <mrna_strand>CAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGGAATGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGACAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTACACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATGCTATCAATTAATCATGATTGTTGTTTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409106" ref_strand="+" ref_description="SGN-E409106 [PPI-13-K1]">
      <seq>cagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcatatccaaaagaaactccgtgatgagattgatacagttcttggaccaggaatgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgcttgccattctcggcatactttgggaggacgtttggtgcagaactttgagatgttgcctcctccaggacagtcgaagcttcgacacctcggagaaaggtggacagttcagtctacacattttgaagcttccaccattgtgatgaaacaagatctttctaactttgtaatgctatcantaatcatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38919" stop="36883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38619" g_stop="38513" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37811" g_stop="37183" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="733" r_length="626" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E409106" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38619" e_stop="38513"/>
          <exon e_start="37811" e_stop="37183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCAT-C-ACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGC-TCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACT</genome_strand>
        <mrna_strand>CAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGGAATGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGC-TTGCC-ATTCTCGGCATACTTTGGGAGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGACAGTCGAAGCTTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTACACATTTTGAAGC-TTCCACCATTGTGATGAAA-CAAGATCTTTCT-AACTTTGTAATGCTATCA-NTAATCATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576988" ref_strand="+" ref_description="SGN-E576988 [31795]">
      <seq>gccagacatgccaagctttcgtaacttcaggctgtgatcaacgagactcttagactcaggatgggcaattcctcttttagtcccacacatgaaccttcatgatgctaagcttgctggatatgatattccagctgagagcaaaatcttggttaacgcttggtggctagctaatgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaatgactttagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgccttgccaattctcggcatcactttgggacgtttggttcaaaactttgagatgttgcctcctccagggcagtcgaaactcgacacctcggagaaaggtggacagttcagtctccacattttgaagcattccaccattgtgatgaaaccaagatctttctaaacttttgtaatactatcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37987" stop="36893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37687" g_stop="37193" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E576988" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37687" e_stop="37193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGAT-GGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAAC-TTTGTAATACTATCAGTT</genome_strand>
        <mrna_strand>GCCAGACATG-CCAAGCTTTCGTAACTTCAGGCTGTGATCAACGAGACTCTTAGACTCAGGATGGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCTAAGCTTGCTGGATATGATATTCCAGCTGAGAGCAAAATCTTGGTTAACGCTTGGTGGCTAGCTAATGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACTTTAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCCTTGCCAATTCTCGGCATCACTTTGGGACGTTTGGTTCAAAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAACTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTTGTAATACTATCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305666" ref_strand="+" ref_description="SGN-E305666 [cLEX-14-H6]">
      <seq>aattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgttgcctcctccagggcagtcgaagctcgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38089" stop="36990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37789" g_stop="37290" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E305666" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37789" e_stop="37290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACA</genome_strand>
        <mrna_strand>AATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621207" ref_strand="+" ref_description="SGN-E621207 [71914]">
      <seq>cccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcgggggttgggaaggaggagttgccccggaattatccttgcattgccaattctcggcatcactttgggacgtttggtgcagaactttgagatgttgcctcctccaggacagtcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37977" stop="36998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37677" g_stop="37296" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E621207" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37677" e_stop="37296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTC-GGTGTT-GGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGC</genome_strand>
        <mrna_strand>CCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGGGGTTGGGAAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTGGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGACAGTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209213" ref_strand="+" ref_description="SGN-E209213 [cLEC-38-N20]">
      <seq>ctcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttaattaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagaggagaaacacgttgaagccaatggcaacgacttcagatttcttcctttcggtgttggcaggaggagttgccccggaattatccttgcattgccaattcttggcatcaccattggacgtttggtgcagaactttgagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37940" stop="37020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37640" g_stop="37320" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E209213" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37640" e_stop="37320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGT</genome_strand>
        <mrna_strand>CTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAATTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609885" ref_strand="+" ref_description="SGN-E609885 [46377]">
      <seq>tgataatgaaaattagcgtggtgtttggcatatttggagttgttttgcgattctcctgtggcaattagaggtttgtcgtaacggtggcctgtgagagcctagcttgcagtggaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcatatccaaaagaaactccgtgatgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacaaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcggtgttggtaggaggagttgccccggaattatccttgcattgccaattctcggcatcacttttgggacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39232" stop="30400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38911" g_stop="38844" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="111" r_length="68" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38843" i_stop="38647" i_length="197">
            <donor d_prob="0.922" d_score="0.88"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="245" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37343" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="715" r_length="470" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E609885" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E609885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38911" e_stop="38844"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCT-ACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATT-GGACG</genome_strand>
        <mrna_strand>TTTGCGATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTGTGAGAG-CCTAGCTTGCAGTG.....................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGTAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTCGGCATCACTTTTGGGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402778" ref_strand="+" ref_description="SGN-E402778 [PPC-8-N21]">
      <seq>ggagaagatgatcccctttttgttaaacttagggctttgaatggtgaaaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcatatccaaaagaaactccgtgatgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacaaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaagagaagcacgttgaggccaatggcaacgacttcagatttcttcctttcngtggtggntaagaggagttgccccggaattatccttgcatttgccattctcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39656" stop="30414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39357" g_stop="39161" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="331" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37357" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="787" r_length="456" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E402778" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E402778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39357" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGC-AGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGC</genome_strand>
        <mrna_strand>GGAGAAGATGATCCCCTTTTTGTTAAACTTAGGGCTTTGAATGGTGAAAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAAGAGAAGCACGTTGAGGCCAATGGCAACGACTTCAGATTTCTTCCTTTCNGTGGTGGNTAAGAGGAGTTGCCCCGGAATTATCCTTGCATTTGCCATTCTCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589055" ref_strand="+" ref_description="SGN-E589055 [42621]">
      <seq>tatccctattttgaggcctttcttgagagggtacttgaagatttgcaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaagggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattatggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtaactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgctaagcttgctggatacgatattccagctgagagcaaaatcttggttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaatgactttagatttcttccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39565" stop="30469"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39265" g_stop="39161" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="239" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37412" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="639" r_length="400" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E589055" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39265" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTT</genome_strand>
        <mrna_strand>TATCCCTATTTTGAGGCCTTTCTTGAGAGGGTACTTGAAGATTTGCAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTATGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTAACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCTAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTGGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACTTTAGATTTCTTCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401750" ref_strand="+" ref_description="SGN-E401750 [PPC-5-O7]">
      <seq>ctttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcatatccaaaagaaactccgtgatgagattgatacagttcttggaccaggagtgcaagtgactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgaaagcaaaatcttagttaacgcttggtggctagctaacaaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgagggcaatggcaacgacttcagatttcttcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39478" stop="30470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39178" g_stop="39161" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="152" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37413" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="551" r_length="399" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E401750" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39178" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37413"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTT</genome_strand>
        <mrna_strand>CTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAAAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGGCAATGGCAACGACTTCAGATTTCTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601734" ref_strand="+" ref_description="SGN-E601734 [54780]">
      <seq>gctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagagggtacttgaagatttgcaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaagggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattatggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgtgacgagattgatacagttcttggaccaggagtgcaagtaactgagccagacatgcccaagcttccgtaccttcaggctgtgatcaaggagactcttagactcaggatggcaattcctcttttagtcccacacatgaaccttcatgatgctaagcttgctggatacgatattccagctgagagcaaaatcttggttaacgcttggtggctagctaacgaccccgctcactggaagaaacctgaagagttcagacctgagaggttcttcgaagaggagaagcacgttgaggccaatggcaatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39597" stop="30485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39297" g_stop="39161" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="271" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37428" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="655" r_length="384" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E601734" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39297" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACT</genome_strand>
        <mrna_strand>GCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGGTACTTGAAGATTTGCAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTATGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGTGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTAACTGAGCCAGACATGCCCAAGCTTCCGTACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCAGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCTAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTGGTTAACGCTTGGTGGCTAGCTAACGACCCCGCTCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTCGAAGAGGAGAAGCACGTTGAGGCCAATGGCAATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310739" ref_strand="+" ref_description="SGN-E310739 [cLEZ-15-B9]">
      <seq>gttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactggaagaaacctgaagagttcagacctgagaggttcttggaagacgagaaacacgttgaagccaatggcaacgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38952" stop="30486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="148" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37811" g_stop="37429" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="531" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E310739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGAC</genome_strand>
        <mrna_strand>GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGACGAGAAACACGTTGAAGCCAATGGCAACGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304602" ref_strand="+" ref_description="SGN-E304602 [cLEX-11-D12]">
      <seq>gaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaagcaccgttgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccaaacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgaccactggaagacacctgaagagttcagacctgagaggttcttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38855" stop="30520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38555" g_stop="38513" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37811" g_stop="37463" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="392" r_length="349" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E304602" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38555" e_stop="38513"/>
          <exon e_start="37811" e_stop="37463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGA</genome_strand>
        <mrna_strand>GAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAGCACCGTTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAAACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGACCACTGGAAGACACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701991" ref_strand="+" ref_description="SGN-E701991 [FA17CA08]">
      <seq>ggcgatcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtngatcaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgagagcaaaatcttagttaacgcttggtggctagctaacaaccccgcccactgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39879" stop="30557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39579" g_stop="39161" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="553" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37500" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="865" r_length="312" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E701991" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>865</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39579" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGT-GATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGA</genome_strand>
        <mrna_strand>GGCGATCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTNGATC-AGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201308" ref_strand="+" ref_description="SGN-E201308 [cLEC-4-G23]">
      <seq>gacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcccaagcttccataccttcaggctgtgatcaaggagactcttagactccggatggcaattcctcttttagtcccacacatgaaccttcatgatgcaaagcttgctggatacgatattccagctgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38921" stop="30609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38621" g_stop="38513" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37811" g_stop="37552" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="369" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E201308" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38621" e_stop="38513"/>
          <exon e_start="37811" e_stop="37552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAG</genome_strand>
        <mrna_strand>GACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306584" ref_strand="+" ref_description="SGN-E306584 [cLEX-13-L4]">
      <seq>tagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccangagtgcaagtgagtgagccagacatgcccaagcttccatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39604" stop="30720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39304" g_stop="39161" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="278" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37663" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="427" r_length="149" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E306584" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39304" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATAC</genome_strand>
        <mrna_strand>TAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCANGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324755" ref_strand="+" ref_description="SGN-E324755 [cTOC-8-A19]">
      <seq>acatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccaggagtgcaagtgagtgagccagacatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39692" stop="30733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39392" g_stop="39161" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="366" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37676" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="502" r_length="136" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E324755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39392" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCC</genome_strand>
        <mrna_strand>ACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205187" ref_strand="+" ref_description="SGN-E205187 [cLEC-16-P17]">
      <seq>ttatgatgtataataacatgtttaggattatggttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaactccgagacgagattgatacagttcttggaccacgagtgcaagtgagtgagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39707" stop="30742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39407" g_stop="39161" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="381" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37685" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="508" r_length="127" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E205187" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39407" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCC</genome_strand>
        <mrna_strand>TTATGATGTATAATAACATGTTTAGGATTATGGTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCACGAGTGCAAGTGAGTGAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468021" ref_strand="+" ref_description="SGN-E468021 [cSTB-2-G12]">
      <seq>gtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaggactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcatatccaaaagaaactccgtgatgagattgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39765" stop="30776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39465" g_stop="39161" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="439" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37719" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="532" r_length="93" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E468021" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E468021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39465" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATA</genome_strand>
        <mrna_strand>GTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAGGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCATATCCAAAAGAAACTCCGTGATGAGATTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201809" ref_strand="+" ref_description="SGN-E201809 [cLEC-11-P23]">
      <seq>ttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtcaaccaccctcacatccaaaagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39674" stop="30794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39374" g_stop="39161" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="348" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37737" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="423" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E201809" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201809" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39374" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAAC</genome_strand>
        <mrna_strand>TTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474354" ref_strand="+" ref_description="SGN-E474354 [cSTB-36-A20]">
      <seq>gttttgaggaaaatgaggaggaaaatgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcctctttttgtaaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactattgtgattttatccctattttgaggcctttcttgagagggtacttgaagatttgcaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgccattgatcacattcttgatgctcaacagaagggagagatcaacgaggataacgttctttacattgttgagaacattaatgttgctgcaatcgaaacaacattatggtcaattgagtggggtatcgcggaactagtcaaccaccctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39870" stop="30806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39573" g_stop="39544" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.733"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39543" i_stop="39422" i_length="122">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39421" g_stop="39161" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="290" r_length="261" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="424" r_length="134" r_score="0.970"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37811" g_stop="37749" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="487" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E474354" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39573" e_stop="39544"/>
          <exon e_start="39421" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</genome_strand>
        <mrna_strand>GTTTTGAGGAAAATGAGGAGGAAAATGA-G..........................................................................................................................GAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCTCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATTGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGGTACTTGAAGATTTGCAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTATGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441122" ref_strand="+" ref_description="SGN-E441122 [cSTA-29-A20]">
      <seq>gtggtgcagcagtatagaggagggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgctataaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaggactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaattgagtggggtatcgcggaactagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39822" stop="30819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39522" g_stop="39161" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="496" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37762" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="546" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E441122" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39522" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTC</genome_strand>
        <mrna_strand>GTGGTGCAGCAGTATAGAGGAGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTATAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAGGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573787" ref_strand="+" ref_description="SGN-E573787 [33152]">
      <seq>cctcgtgccgctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaggactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtggtcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39562" stop="30843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39270" g_stop="39161" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="244" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37786" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="270" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E573787" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>270</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39270" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATT</genome_strand>
        <mrna_strand>CCTCGTGCCGCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAGGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E441311" ref_strand="+" ref_description="SGN-E441311 [cSTA-30-A9]">
      <seq>gtggtgcagctttatagaggagggtgggagtctgaggctgcgagtgtagttgaggatgtgaagaaaaaccctgaatctgctataaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcatagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaggactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggattacgttctttacatcgttgagaacatcaatgttgctgcaatcgaaacaacattgtgggcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39822" stop="30844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39522" g_stop="39161" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38513" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="496" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37811" g_stop="37787" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="521" r_length="25" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E441311" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E441311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39522" e_stop="39161"/>
          <exon e_start="38646" e_stop="38513"/>
          <exon e_start="37811" e_stop="37787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATGAGATCACACACATTCTGAACTCACTAGTGGTAGATCTTGGAAATGCCTCTTCCTAAAGTTGTTTTATTGATTGTATCGCCTTGTAGTAAGTAATACGTGAGCTTTGATGAGGTCTTAAACTTGAGAAGTCACATGTCCTACCATCGAGAACCATTGAAACATGTCTTGTTTGTTCATATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAAT</genome_strand>
        <mrna_strand>GTGGTGCAGCTTTATAGAGGAGGGTGGGAGTCTGAGGCTGCGAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTATAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCATAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAGGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATTACGTTCTTTACATCGTTGAGAACATCAATGTTGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCGAAACAACATTGTGGGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321496" ref_strand="+" ref_description="SGN-E321496 [cTOB-23-P3]">
      <seq>gagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgagaacattaatgttgctggtatgtttagaaataacatatatttgattctctagagtataatttgttctagtttggtttaagtgattgcatcctggttagtataaggtaatttataagtgaatgaaaatccaattccaaatttatatattttttctcaaaagtagtagttgagagttaccaaataagggccccaagatttaactgctttaatgatgacaaggactggttggtgcctgggccctgggggctaccacataccaatttcttgtggtgaataagatgttatgtttacatacaagtagaacatgtagtttccaagattgaaggggaaataagtaccacaaatcttatactactataagagttaaagttccaaacaaagttggatacaatcgggttatttgggttttactgaattcattacttttgggtcaaagtgtgcatacatatgaaaaatgagttcattatatatacatttgtaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38928" stop="37747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38628" g_stop="38047" g_length="582"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="582" r_length="582" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321496" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38628" e_stop="38047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATG</genome_strand>
        <mrna_strand>GAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGGTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300335" ref_strand="+" ref_description="SGN-E300335 [cLEW-17-F5]">
      <seq>aaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataacgttctttacatcgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39758" stop="38229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39458" g_stop="39161" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38529" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E300335" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39458" e_stop="39161"/>
          <exon e_start="38646" e_stop="38529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAG</genome_strand>
        <mrna_strand>AAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475024" ref_strand="+" ref_description="SGN-E475024 [cSTB-39-A21]">
      <seq>ggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgcgacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaaacttagggctttgaatggtgaaaggagtagattggctcatagctttgagtacaactatggagattttatccctattttgaggcctttcttgagaggatacttgaagatttgtgaggagggtaaggagaacaggttgaagctattcaaagactactttgttgatgaaagaaagaatctcgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgaggataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39787" stop="38248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39487" g_stop="39161" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38548" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="426" r_length="99" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E475024" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39487" e_stop="39161"/>
          <exon e_start="38646" e_stop="38548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAA</genome_strand>
        <mrna_strand>GGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCGACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAACTTAGGGCTTTGAATGGTGAAAGGAGTAGATTGGCTCATAGCTTTGAGTACAACTATGGAGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTGAGGAGGGTAAGGAGAACAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCTCGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204136" ref_strand="+" ref_description="SGN-E204136 [cLEC-13-A5]">
      <seq>atcccctttttgctaagcttagggctttgaatggtgagaggagtagattggcacaaagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaacgagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcatataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctcaacagaagggagagatcaacgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39647" stop="38253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39347" g_stop="39161" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38553" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="281" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E204136" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39347" e_stop="39161"/>
          <exon e_start="38646" e_stop="38553"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAG</genome_strand>
        <mrna_strand>ATCCCCTTTTTGCTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAAAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAACGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCATATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321187" ref_strand="+" ref_description="SGN-E321187 [cTOB-13-B24]">
      <seq>ttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggcacagagctttgagtacaactatggtgattttatcccaattttgaggcctttcttgaggggttacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagtatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39932" stop="38276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39632" g_stop="39161" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38576" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="543" r_length="71" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321187" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39632" e_stop="39161"/>
          <exon e_start="38646" e_stop="38576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTC</genome_strand>
        <mrna_strand>TTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469137" ref_strand="+" ref_description="SGN-E469137 [cSTB-10-H13]">
      <seq>ctggaggaagatgaggaggattatgactgtacccttctttacaaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgcaacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaaacttagggctttgaatggtgaaaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaggttaaggagaagaggttgaagctattcaaagactactttgttgatgaaagaaagaagcttgcaaataccaagagcatggacagcaatgctctaaaatgtgcaattgatcacattcttgaagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39871" stop="38276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39571" g_stop="39161" g_length="411"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="411" r_length="411" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38576" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="482" r_length="71" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E469137" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39571" e_stop="39161"/>
          <exon e_start="38646" e_stop="38576"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTC</genome_strand>
        <mrna_strand>CTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTCTTTACAAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCAACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAACTTAGGGCTTTGAATGGTGAAAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCAAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457722" ref_strand="+" ref_description="SGN-E457722 [cPRO-3-D19]">
      <seq>gtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgcaacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaaacttagggctttgaatggtgaaaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcctttcttgagaggatacttgaagatttgtaaggaagttaaggagaagaagttgaagctattcaaagactactttggtgatgaaagaaagaagcttgccaataccaagaacatggacagcaatgctctaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39819" stop="32019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39519" g_stop="39161" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38646" g_stop="38603" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="403" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E457722" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457722" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39519" e_stop="39161"/>
          <exon e_start="38646" e_stop="38603"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAAGTAAGTTCACTTTTTTTTCTCTTGTTAATCCATTTATGCTCAATTTGATCATATCAGTTTTATTTATTAGTTTAGTTTAGTTGTAAGGGGTGTTTGACTAAATCTTGGAACAGTATGGATCAAATCGGAAAAGAAAAGGAAGTACTAGTTGGCATTACATTTCAGAATAGTAGGTCCATTTGACCCGATGGTTAAATTTTAAAAGTTTTCTGTTTTCAAAGTGATAATTGATATTTCAAAAATTGGCTGTTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTGGCAAGAATAGTGAGTGATTTGGAGTAAAAAAGTTGATAACTTTTTGATGTTTATCAAATTTTTAGTTGAATTCCAGAATTGGCCACTAAGAATCATGTATGATTGAGTGATAGTTAAAGTGCTTTGAGGTACTATTAGGTAGCTTTTGATGGTGGACCTTGTGTTTTAGTTTGTAACATTTTTATTGCTTTACACAGGAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAAT</genome_strand>
        <mrna_strand>GTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCAACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAACTTAGGGCTTTGAATGGTGAAAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCCTTTCTTGAGAGGATACTTGAAGATTTGTAAGGAAGTTAAGGAGAAGAAGTTGAAGCTATTCAAAGACTACTTTGGTGATGAAAGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTTGCCAATACCAAGAACATGGACAGCAATGCTCTAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589665" ref_strand="+" ref_description="SGN-E589665 [43245]">
      <seq>cttccctctaaaagaactcaccaaaaatggatcttctgttactggaaaagaccttaataggtcttttctttgctattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgaacactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgcaagtgtggttgaggatgtgaagaagaaccctgaatctgcaacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgatagaagatttgagagcgaagatgatccctttttgtaaagcttagggctttgaatggtgagaggagtagattggctcagagctttgagtacaactatggtgattttatccctattttgaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40270" stop="38948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39971" g_stop="39248" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E589665" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39971" e_stop="39248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCATC-AAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCC</genome_strand>
        <mrna_strand>CTTCCCTCTAAAAGAACTCACCA-AAAATGGATCTTCTGTTACTGGAAAAGACCTTAATAGGTCTTTTCTTTGCTATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCAAGTGTGGTTGAGGATGTGAAGAAGAACCCTGAATCTGCAACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGAAGATTTGAGAGCGAAGATGAT-CCCTTTTTGTAAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCTATTTTGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589992" ref_strand="+" ref_description="SGN-E589992 [43578]">
      <seq>tacccattctcctcaatttttccccaaaagaactcgaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgctattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaacctaactgagtatgctaaaaaatttggtgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctggaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggcaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgagaaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatacaggtgggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgagggaaacagattgcagcttatgatgtataataacatgtttaggattatgtctgatagaagatttgagagtgaagatgatcccctttttgttaagcttagggctttgaatggtgagaggagtagattggctcagagcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40249" stop="38984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39284" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="705" r_length="692" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E589992" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCT-GAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGA-GGAAA-AGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGA</genome_strand>
        <mrna_strand>CAATTTTTCCCCAAAAGAACTCG-AAAA--ATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCTATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTAACTGAGTATGCTAAAAAATTTGGTGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGCAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGAAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATACAGGTGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGGAAACAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTCTGATAGAAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414104" ref_strand="+" ref_description="SGN-E414104 [STM-18-P4]">
      <seq>aaaatacccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactgtacccttctttacaaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaaccctgaatctgcaacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctttttgttaaacttaaggctttgaatggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40288" stop="32939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39311" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="679" r_length="662" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E414104" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGA</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACTGTACCCTTCTTTACAAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCAACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAACTTAAGGCTTTGAATGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577240" ref_strand="+" ref_description="SGN-E577240 [33997]">
      <seq>ctctgaaagaactcaccaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgctattttaatcgctattgttgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttaccgagtatgctaaaaagtttggtgatgtgttcttgcttagaatgggacaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttactgtttatggtgagcactggaggaaaatgaggaggattatgactgtacccttttttactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaaaaatcctgaatctgctactaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaaagatgatcctcttttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40262" stop="39037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39967" g_stop="39335" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E577240" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39967" e_stop="39335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTG-AAGATGATCCCCTTTTTGT</genome_strand>
        <mrna_strand>CTCTGAAAGAACTCACC-AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCTATTTTAATCGCTATTGTTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACCGAGTATGCTAAAAAGTTTGGTGATGTGTTCTTGCTTAGAATGGGACAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACTGTTTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAAAAATCCTGAATCTGCTACTAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAAGATGATCCTCTTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329060" ref_strand="+" ref_description="SGN-E329060 [cTOC-24-O22]">
      <seq>aatacccatttttcatcaaaagaactcaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40280" stop="39040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39980" g_stop="39340" g_length="641"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E329060" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39980" e_stop="39340"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTT</genome_strand>
        <mrna_strand>AATACCCATTTTTCATCAAAAGAACTCAAAAAAA-ATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390640" ref_strand="+" ref_description="SGN-E390640 [TUS-47-K22]">
      <seq>ttcaaaagaactcacaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccataaaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggagagcactggaggaaaatgaggaggattatgactgtaccctttttcactagcaaagttgtgcaggagtatagaggggggtgggagtctgacgctgccagtgtaattgaggatgtgaagaaaaaccctgaatctgctacgaatgggattgttttgaggaaaagattgcagcttatgatgtataatgacatgtttaggattatgtttgataggagatttgagagtgaagatgatcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40265" stop="39042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39966" g_stop="39342" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="625" r_length="625" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E390640" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39966" e_stop="39342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCC</genome_strand>
        <mrna_strand>TTCAAAAGAACTCACAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAAAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGAGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAGCAAAGTTGTGCAGGAGTATAGAGGGGGGTGGGAGTCTGACGCTGCCAGTGTAATTGAGGATGTGAAGAAAAACCCTGAATCTGCTACGAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATGACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366980" ref_strand="+" ref_description="SGN-E366980 [cLPT-6-O6]">
      <seq>acatttgttgtccaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggaaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgagaaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggtgggtgggagtctgaggctgctagtgtggttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgttcaggattatgtttgacagaagatttgagagtgaagatgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40249" stop="39043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39949" g_stop="39343" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="620" r_length="607" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E366980" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E366980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39949" e_stop="39343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCC</genome_strand>
        <mrna_strand>AAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGAAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGAAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCTAGTGTGGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTCAGGATTATGTTTGACAGAAGATTTGAGAGTGAAGATGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322671" ref_strand="+" ref_description="SGN-E322671 [cTOB-26-O16]">
      <seq>cccatttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagatgcagcttatgatgtataataacatgtttaggattatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40276" stop="39072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39976" g_stop="39372" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E322671" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39976" e_stop="39372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACT-AACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTG</genome_strand>
        <mrna_strand>CCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGA-TGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212947" ref_strand="+" ref_description="SGN-E212947 [cLEC-72-A15]">
      <seq>tttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattgcagcttatgatgtataataacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40272" stop="39087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39972" g_stop="39387" g_length="586"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="586" r_length="586" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E212947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39972" e_stop="39387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGT</genome_strand>
        <mrna_strand>TTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576531" ref_strand="+" ref_description="SGN-E576531 [59764]">
      <seq>ctctgaaagaactcaccaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgctattttaatcgctattgttgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttaccgagtatgctaaaaagtttggtgatgtgttcttgcttagaatgggacaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacaacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttactgtttatggtgagcactggaggaaaatgaggaggattatgactgtacccttttgtactaataaggtggtgcagcagtatagaggggggtgggagtctgaggctgctagtgtagttgaggatgtgaagaataatcctgaatctgctactaatgggatcgtattgaggaaacgattgcagcttatgatgtataataacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40262" stop="39089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39967" g_stop="39389" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="579" r_length="579" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E576531" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39967" e_stop="39389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACAC-ACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACAT</genome_strand>
        <mrna_strand>CTCTGAAAGAACTCACC-AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCTATTTTAATCGCTATTGTTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACCGAGTATGCTAAAAAGTTTGGTGATGTGTTCTTGCTTAGAATGGGACAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACAACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACTGTTTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTGTACTAATAAGGTGGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCTAGTGTAGTTGAGGATGTGAAGAATAATCCTGAATCTGCTACTAATGGGATCGTATTGAGGAAACGATTGCAGCTTATGATGTATAATAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203315" ref_strand="+" ref_description="SGN-E203315 [cLEB-3-H9]">
      <seq>gcacgagctcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaagggttgaattgggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccaatgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaaaagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40261" stop="39112"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39963" g_stop="39412" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E203315" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39963" e_stop="39412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTG</genome_strand>
        <mrna_strand>GCACGAGCTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAAGGGTTGAATTGGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAATGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304250" ref_strand="+" ref_description="SGN-E304250 [cLEX-6-J4]">
      <seq>aaatacccatttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgaggatgtgaagaaaaaccctgaatctgctacaaatgggattgttttgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40281" stop="39119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39981" g_stop="39419" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E304250" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39981" e_stop="39419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAA</genome_strand>
        <mrna_strand>AAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371494" ref_strand="+" ref_description="SGN-E371494 [TUS-29-D22]">
      <seq>tcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaggctgccagtgtagttgatgatgtgaggaaaaaccctgaatctgctacagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40268" stop="39132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39432" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E371494" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGA</genome_strand>
        <mrna_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGATGATGTGAGGAAAAACCCTGAATCTGCTACAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200660" ref_strand="+" ref_description="SGN-E200660 [cLEC-9-O20]">
      <seq>tttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggagtctgaagctgccagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40090" stop="39177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39790" g_stop="39477" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E200660" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200660" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39790" e_stop="39477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTG</genome_strand>
        <mrna_strand>TTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAAGCTGCCAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367171" ref_strand="+" ref_description="SGN-E367171 [cLPT-5-L14]">
      <seq>aacaacacacatttgttgtccaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattattatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgcttagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacaggaaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgagaaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggtgggtgggagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40249" stop="39189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39949" g_stop="39489" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="482" r_length="461" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E367171" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39949" e_stop="39489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTG</genome_strand>
        <mrna_strand>AAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGAAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGAAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGTGGGTGGGAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370978" ref_strand="+" ref_description="SGN-E370978 [TUS-29-D21]">
      <seq>tcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40268" stop="39193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39493" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E370978" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAG</genome_strand>
        <mrna_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306078" ref_strand="+" ref_description="SGN-E306078 [cLEY-13-O23]">
      <seq>catttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40274" stop="39195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39974" g_stop="39495" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="480" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E306078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39974" e_stop="39495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGG</genome_strand>
        <mrna_strand>CATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390761" ref_strand="+" ref_description="SGN-E390761 [TUS-47-K21]">
      <seq>atcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgcagcagtatagaggggggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40266" stop="39197"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39966" g_stop="39497" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E390761" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39966" e_stop="39497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTG</genome_strand>
        <mrna_strand>ATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278599" ref_strand="+" ref_description="SGN-E278599 [cLER-10-B22]">
      <seq>aaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40152" stop="39215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39852" g_stop="39515" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E278599" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39852" e_stop="39515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCA</genome_strand>
        <mrna_strand>AAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307893" ref_strand="+" ref_description="SGN-E307893 [cLEY-20-K22]">
      <seq>ctcgtgccgaaaatacccatttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagtttgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40284" stop="39216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39991" g_stop="39516" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E307893" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39991" e_stop="39516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAG-TTGTGC</genome_strand>
        <mrna_strand>CTCGTGCCGAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325485" ref_strand="+" ref_description="SGN-E325485 [cTOC-1-J8]">
      <seq>caaaagaactcatttaaaatggatcttctctgtggagaagacctaataggtcttttctttgccattttaatcgctattatcatcttaaacttcgtccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaanaccnactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaacaaagttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40248" stop="39217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39964" g_stop="39517" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="442" r_length="442" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E325485" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39964" e_stop="39517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTG</genome_strand>
        <mrna_strand>CAAAAGAACTC-ATTTAAAATGGATCTTCTC-TG-TGGAGAAGACC-TAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCT-TAAACTTCG-TCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAANACCNACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280267" ref_strand="+" ref_description="SGN-E280267 [cLER-1-C5]">
      <seq>tcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcactaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40268" stop="39226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39968" g_stop="39526" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E280267" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39968" e_stop="39526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAAC</genome_strand>
        <mrna_strand>TCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438546" ref_strand="+" ref_description="SGN-E438546 [cSTA-8-J21]">
      <seq>aaaatacccattctcctcaatttttccccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttttcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatctttacagggaagggtcaagatatggtttttacagtgtatggtgaacactggaggaaaatgaggaggattatgactgtacccttttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40276" stop="33158"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39529" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="461" r_length="444" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E438546" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACT</genome_strand>
        <mrna_strand>CAATTTTTCCCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTTTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATCTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346459" ref_strand="+" ref_description="SGN-E346459 [cTOF-23-L3]">
      <seq>atacccatttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40279" stop="39230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39979" g_stop="39530" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E346459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39979" e_stop="39530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCAC</genome_strand>
        <mrna_strand>ATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205362" ref_strand="+" ref_description="SGN-E205362 [cLEC-25-H4]">
      <seq>aagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40261" stop="39230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39961" g_stop="39530" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E205362" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39961" e_stop="39530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCAC</genome_strand>
        <mrna_strand>AAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335552" ref_strand="+" ref_description="SGN-E335552 [cTOE-2-J21]">
      <seq>tcaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctcttaaaccttcgttccaagcgattcaaactaccccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaacccttacctgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacaccnaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactgtaccctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40255" stop="39234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39955" g_stop="39534" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E335552" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39955" e_stop="39534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTC-TAAA-CTTCGTTCCAAGCGATTCAAACTA-CCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAA-CCTTA-CTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACA-CAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTT</genome_strand>
        <mrna_strand>TCAAA-AAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTTAAACCTTCGTTCCAAGCGATTCAAACTACCCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCCTTACCTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACCNAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294939" ref_strand="+" ref_description="SGN-E294939 [cLET-17-B17]">
      <seq>catttttcatcaaaagaactcgaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttgtgatatttttacagggaagggtcaacatatgggttttacagtgtatggtgagcactggaggaaaatgaggaggattatgactggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40274" stop="39239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39974" g_stop="39539" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E294939" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39974" e_stop="39539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACC</genome_strand>
        <mrna_strand>CATTTTTCATCAAAAGAACTCGAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTGTGATATTTTTACAGGGAAGGGTCAACATATGGGTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413875" ref_strand="+" ref_description="SGN-E413875 [STM-18-H9]">
      <seq>aaaatacccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttcntcttgcttagaatggggcaaaggaacttagttgttgtgtcatccccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaaatgtgtttttgatatttttacaggtaagggtcaagatatggtttttacagtgtatggtgaacactggaggaagatgaggaggattatgactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40288" stop="33171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39544" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="448" r_length="431" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E413875" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATG-TGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCAT-CCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACT</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCNTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAAATGTGTTTTTGATATTTTTACAGGTAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAACACTGGAGGAAGATGAGGAGGATTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201554" ref_strand="+" ref_description="SGN-E201554 [cLEC-4-L12]">
      <seq>tttttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggggaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttacagggaagggtcaagatatggtttttacagtgtatggtgagcactggaggaaaatgaagaggattatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40272" stop="39244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39972" g_stop="39544" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E201554" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39972" e_stop="39544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACT</genome_strand>
        <mrna_strand>TTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGGGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAAGAGGATTATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283412" ref_strand="+" ref_description="SGN-E283412 [cLER-12-O4]">
      <seq>tcaaaagaactcaaaataaaatggatcttctcttgctggagaagaccttaataggtgttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaagggggtgaatttggttcaagaacaagaaatgttggttttgatatttttacagggaagggtcaagatatgggttttacagtgtatggtgagcactggaggaaaatgaggaggattatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40265" stop="39245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39965" g_stop="39545" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E283412" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39965" e_stop="39545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGAC</genome_strand>
        <mrna_strand>TCAAAAGAACTCAAAATAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTGTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGGTGAATTTGGTTCAAGAACAAGAAATGTTGGTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGGTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445487" ref_strand="+" ref_description="SGN-E445487 [cSTA-45-N11]">
      <seq>ctttctcctcaatttttccccaaaagaactcaaaaaatggatcttgtcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttaccgagtatgctaaaaagtttggtgatgtgttcttgcttacaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtgtttgatatttttacagggaagggtcaagatatggtttttactgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40276" stop="33209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39581" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="401" r_length="392" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E445487" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTA</genome_strand>
        <mrna_strand>CAATTTTTCCCCAAAAGAACTCAAA--AAA-TGGATCTTGTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACCGAGTATGCTAAAAAGTTTGGTGATGTGTTCTTGCTTACAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTGTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACTGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310283" ref_strand="+" ref_description="SGN-E310283 [cTOA-1-I6]">
      <seq>aactcaaaaaagaatggatcttctcttgctggagaagaccttcataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatacaaaccttactgagtatgctcaaaaatttggtgatgtgttcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatctggttcaagaacaagaaatgttgcttttgatatttttacacggaagggtcaagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40258" stop="39295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39958" g_stop="39595" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E310283" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39958" e_stop="39595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATG</genome_strand>
        <mrna_strand>AACTCAAAAAAGAATGGATCTTCTCTTGCTGGAGAAGACCTTCATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATACAAACCTTACTGAGTATGCTCAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATCTGGTTCAAGAACAAGAAATGTTGCTTTTGATATTTTTACACGGAAGGGTCAAGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317624" ref_strand="+" ref_description="SGN-E317624 [cTOB-8-G22]">
      <seq>ttcatcaaaagaactcaaaaaaaaatggatcttctcttgctggagaagaccttaataggtcttttctttgccattttaatcgctattatcatctctaaacttcgttccaagcgattcaaactacccccaggtccaattccagttccaatttttgggaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaattgggtgatgtgtgcttgctaagaatggggcaaaggaacttagctgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaggaacacgaaatgttggttttgatatttttacagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40269" stop="39308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39969" g_stop="39608" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E317624" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39969" e_stop="39608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAA</genome_strand>
        <mrna_strand>TTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTGGGTGATGTGTGCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAGGAACACGAAATGTTGGTTTTGATATTTTTACAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481852" ref_strand="+" ref_description="SGN-E481852 [cSTD-19-H8]">
      <seq>aaatacccattgtcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaacttttacacacaccaggggtagaatttggttcaagagcatgaaatgttgtgtttgatatttttacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40276" stop="33240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39612" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="377" r_length="361" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E481852" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E481852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39612"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAG</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAACTTTTACACACACCAGGGGTAGAATTTGGTTCAAGAGCATGAAATGTTGTGTTTGATATTTTTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473250" ref_strand="+" ref_description="SGN-E473250 [cSTB-31-P13]">
      <seq>aaaatacccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatatttttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40288" stop="33241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39613" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="377" r_length="360" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E473250" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACA</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476618" ref_strand="+" ref_description="SGN-E476618 [cSTB-45-O14]">
      <seq>attttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaagggttgaatttggttcaagaacaagaaatgttgtttttgatattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40278" stop="33243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39615" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="366" r_length="358" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E476618" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTA</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAAGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472864" ref_strand="+" ref_description="SGN-E472864 [cSTB-30-K21]">
      <seq>aaaatacccattttcctcaatttttctccaaaagaactcaaaaaatggatcttctcttactggagaagaccttaataggtcttttctttgccattttaatcgctattattgtctctaaacttcgttccaagcgatttaaactacccccaggtccaattccagtcccagtttttggaaattggcttcaagttggtgatgatttgaaccatagaaaccttactgagtatgctaaaaaatttggtgatgttctcttgcttagaatggggcaaaggaacttagttgttgtgtcatcccctgaattagctaaagaagttttacacacacaaggggttgaatttggttcaagaacaagaaatgttgtttttgatattttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40288" stop="33243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39975" g_stop="39615" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="375" r_length="358" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E472864" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39975" e_stop="39615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTA</genome_strand>
        <mrna_strand>CAATTTTTCTCCAAAAGAACTCAAA--AAA-TGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTGTCTCTAAACTTCGTTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTCCCAGTTTTTGGAAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTTCTCTTGCTTAGAATGGGGCAAAGGAACTTAGTTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E554940" ref_strand="+" ref_description="SGN-E554940 [cTSC-5-O17]">
      <seq>aatttcctatggcacttggaaaattatttcaagtgtatgcgggttcgtagtgatgtgaacaagatcaacactgttgttttgtatctttcggagttggccatactatggtggaagcgtaaagagtctgacatcgcaaaggggacatgcacgttgaacacatgggagcagtttcgtgtggagttcaagaaggcgttcttcccgagcaacgttttcaatgaggcaaagcacaagatgagggagttgagacaaaagggcagcatacgcgcgtatgtgcgggagtttaccacccttacatttcagattcccaacctcagggacgatgacacgttgttctacttcatggattggctgcataactgggccagaacggagtttgaacggcggcaggtcaggactattgacgacgccattatgcaggccgaagccttgacagacttcaggcaggagaagtttctcagtgcctaggtggacgactaggtaggaagtcttgatgatagtggggaagacagtggcgaaggcgaggagcatacgccacaacccaaaaggcgtgacacctatggttccagcggcaagaagaccggagatcgtggcaacacggtaagggattccaaggatggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47523" stop="48742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47823" g_stop="48442" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E554940" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47823" e_stop="48442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCCTTTGGCACTTGGAAAATTATTTCAAGTGTATGCGGGTCCGTAGTGATGTCAACAAGATCAACACGGCTGTGTTGTATCTTTCAGAGTTGGCCATGCTGTGGTGGAAGCGTAAAGAGTTTGACATCGCAAAGAGGGCATGCGCGTTGAACACATGGGAGCAGTGCCGTGTGGAGTTCAAGAAGGCATTTCTCCCTAGCAACGTTGTCTATGAGGCAAAGCGCAAAATGCAGGAGTTGAGACAAAAGGGCAGCATACGCGCGTATGTGCGGGAGTTTACCACCCTTAAATTTCAGATTCCCGACCTCATGGACGACGACGCGTTGTTCTACTTCATGGATGGGCTGCAAAATTGGGCCAGAACGGAGTTGGAACGGCGGCAAGTCAGGACTATAGACGACGCCATCACGCAGGCTGAAGCCTTGACAGACTTCAAGCGAGAGAAGTCTCTTAGTGCCGAGGTGGACGACGAGGTAGGCAGTCATGATGATAGTGGGGATGACAGTGGCGAAGGCGAGGAGCAAACGCCACAACCCAAAAGGCGTGACACCTACGGGTCCAGCGGCAAGAAGCCCGGAGATCGTGGCAATACGGTAAGGGATTCCAAGGATGGTTG</genome_strand>
        <mrna_strand>AATTTCCTATGGCACTTGGAAAATTATTTCAAGTGTATGCGGGTTCGTAGTGATGTGAACAAGATCAACACTGTTGTTTTGTATCTTTCGGAGTTGGCCATACTATGGTGGAAGCGTAAAGAGTCTGACATCGCAAAGGGGACATGCACGTTGAACACATGGGAGCAGTTTCGTGTGGAGTTCAAGAAGGCGTTCTTCCCGAGCAACGTTTTCAATGAGGCAAAGCACAAGATGAGGGAGTTGAGACAAAAGGGCAGCATACGCGCGTATGTGCGGGAGTTTACCACCCTTACATTTCAGATTCCCAACCTCAGGGACGATGACACGTTGTTCTACTTCATGGATTGGCTGCATAACTGGGCCAGAACGGAGTTTGAACGGCGGCAGGTCAGGACTATTGACGACGCCATTATGCAGGCCGAAGCCTTGACAGACTTCAGGCAGGAGAAGTTTCTCAGTGCCTAGGTGGACGACTAGGTAGGAAGTCTTGATGATAGTGGGGAAGACAGTGGCGAAGGCGAGGAGCATACGCCACAACCCAAAAGGCGTGACACCTATGGTTCCAGCGGCAAGAAGACCGGAGATCGTGGCAACACGGTAAGGGATTCCAAGGATGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E399791" ref_strand="+" ref_description="SGN-E399791 [cSTC-2-O18]">
      <seq>gtcgggtttatcaaactttcttctttcgcactccattctcactttttcttttgattgtatcaactgccgtaatttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51996" stop="52964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52296" g_stop="52664" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E399791" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E399791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52296" e_stop="52664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGGGTTTATCAAGCTTTCTTCTTTTGCACTCCATTCTCACTTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGA</genome_strand>
        <mrna_strand>GTCGGGTTTATCAAACTTTCTTCTTTCGCACTCCATTCTCACTTTTTCTTTTGATTGTATCAACTGCCGTAATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746630" ref_strand="+" ref_description="SGN-E746630 [GI|47104120]">
      <seq>gactttctcctttgtgtgtatcaactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacagcggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaacatcaaatggtttgtaccattctaggttccattacttgttcgttcagaaagtgcagcataagcagtcttactatccatttaagctgcttaagtatctcatcgtgaggggtgtttctgtagactttcggtcatattagtgcctcattctgcgggatggcttatttcctcatatattagctttgattttcgacttgcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52036" stop="57868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52335" g_stop="52869" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="766" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="925" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="926" r_stop="1078" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1079" r_stop="1162" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57138" g_stop="57569" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1163" r_stop="1594" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1595" polyA_stop="1608"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E746630" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1594</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52335" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGACTTTCT</genome_strand>
        <mrna_strand>GACTTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAGCGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGACTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437934" ref_strand="+" ref_description="SGN-E437934 [cSTA-5-H1]">
      <seq>gttttttttttgattgtatcaactgccgtaactttttacacttccaacaatggcatcagccatggttctcgatccaaagccgacaccggagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52038" stop="53052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52337" g_stop="52752" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E437934" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52337" e_stop="52752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCT</genome_strand>
        <mrna_strand>GTTTTTTTTTTGATTGTATCAACTGCCGTAAC-TTTTTACACTTCCAACAATGGCATCAGCCATGGTTCTCGATCCAAAGCCGACACCGGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724645" ref_strand="+" ref_description="SGN-E724645 [FC24DA04]">
      <seq>cgattggcggccaatcggccgaattgactttctcctttgtgtgtatcaactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52028" stop="56593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52338" g_stop="52869" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="560" r_length="532" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="791" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56293" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="792" r_stop="860" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E724645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52338" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGAT</genome_strand>
        <mrna_strand>TTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724861" ref_strand="+" ref_description="SGN-E724861 [FC25BE03]">
      <seq>gggcgattggcggccaatcggccgaattggtgtgtatcaactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52045" stop="56633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52348" g_stop="52869" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="551" r_length="522" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="782" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56333" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="891" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E724861" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724861" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52348" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAA</genome_strand>
        <mrna_strand>GTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346987" ref_strand="+" ref_description="SGN-E346987 [cTOF-25-M23]">
      <seq>gtatcaacctgccgtaacttttttccacttccaacaaatggcatcagccatgaattctcgatccaaaacccctcgccggagctaccctgcaactcgacctgacttatcgtacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52052" stop="107990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52352" g_stop="52869" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54516" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="560" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E346987" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52352" e_stop="52869"/>
          <exon e_start="54479" e_stop="54516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAA-CTGCCGTAACTTTTTTCCACTTCCAAC-AATGGCATCAGCCATG-ATTCTCGATCCAAAA-CCCTCGCCGGAGCTA-CCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCG</genome_strand>
        <mrna_strand>GTATCAACCTGCCGTAACTTTTTTCCACTTCCAACAAATGGCATCAGCCATGAATTCTCGATCCAAAACCCCTCGCCGGAGCTACCCTGCAACTCGACCTGACTTATCGT-ACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730747" ref_strand="+" ref_description="SGN-E730747 [LA25AC09]">
      <seq>cttcaactgccgtaacttttttccacttccaacaatggcatcatccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcctgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgccattgccactgcgaggtttgatgctcaaactggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52055" stop="56642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52353" g_stop="52869" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="748" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56342" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="866" r_length="118" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E730747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52353" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTG</genome_strand>
        <mrna_strand>CTTCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCATCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCCTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCCATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321485" ref_strand="+" ref_description="SGN-E321485 [cTOB-23-L9]">
      <seq>tcaactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52055" stop="108022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52355" g_stop="52869" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54548" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="585" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E321485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52355" e_stop="52869"/>
          <exon e_start="54479" e_stop="54548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATG</genome_strand>
        <mrna_strand>TCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390665" ref_strand="+" ref_description="SGN-E390665 [TUS-46-B22]">
      <seq>caactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaattctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttggcaaggctgttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52056" stop="108117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52356" g_stop="52869" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54643" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="679" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E390665" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52356" e_stop="52869"/>
          <exon e_start="54479" e_stop="54643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCT</genome_strand>
        <mrna_strand>CAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAATTCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGGCAAGGCTGTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291056" ref_strand="+" ref_description="SGN-E291056 [cLET-8-G23]">
      <seq>aactgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaattctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52057" stop="108055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52357" g_stop="52869" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54581" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="616" r_length="103" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E291056" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52357" e_stop="52869"/>
          <exon e_start="54479" e_stop="54581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCC</genome_strand>
        <mrna_strand>AACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAATTCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326194" ref_strand="+" ref_description="SGN-E326194 [cTOC-16-D11]">
      <seq>actgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacatttcaaagcaggaaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52058" stop="107989"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52358" g_stop="52869" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="512" r_length="512" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54515" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="549" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E326194" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326194" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52358" e_stop="52869"/>
          <exon e_start="54479" e_stop="54515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTC</genome_strand>
        <mrna_strand>ACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTTCAAAGCAGGAAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265386" ref_strand="+" ref_description="SGN-E265386 [cLEI-9-K3]">
      <seq>tgccgtaacttttttccacttccaacaatggcatcagccgtgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatacttaacacggattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52060" stop="107987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52360" g_stop="52869" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54513" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="546" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E265386" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52360" e_stop="52869"/>
          <exon e_start="54479" e_stop="54513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCAC-GATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAAT</genome_strand>
        <mrna_strand>TGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCGTGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTTAACACGGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246387" ref_strand="+" ref_description="SGN-E246387 [cLEF-52-F13]">
      <seq>tgccgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactaccggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52060" stop="53089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52360" g_stop="52789" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E246387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52360" e_stop="52789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTC</genome_strand>
        <mrna_strand>TGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACCGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341237" ref_strand="+" ref_description="SGN-E341237 [cTOE-22-G6]">
      <seq>ccgttacttttttccacttcctacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52062" stop="53091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52362" g_stop="52791" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E341237" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52362" e_stop="52791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTA</genome_strand>
        <mrna_strand>CCGTTACTTTTTTCCACTTCCTACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204037" ref_strand="+" ref_description="SGN-E204037 [cLEC-22-G4]">
      <seq>cgtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52063" stop="53132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52363" g_stop="52832" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E204037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52363" e_stop="52832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCT</genome_strand>
        <mrna_strand>CGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299971" ref_strand="+" ref_description="SGN-E299971 [cLEW-11-E10]">
      <seq>gtaacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52064" stop="108024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52364" g_stop="52869" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="506" r_length="506" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54550" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="578" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E299971" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52364" e_stop="52869"/>
          <exon e_start="54479" e_stop="54550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAG</genome_strand>
        <mrna_strand>GTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315763" ref_strand="+" ref_description="SGN-E315763 [cTOA-26-B13]">
      <seq>aacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatgggtcaccaggtactggggaaactatgcttgcaaaggctgttgctcatcacactacggccgctttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52066" stop="54965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52366" g_stop="52869" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54665" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="691" r_length="187" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E315763" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52366" e_stop="52869"/>
          <exon e_start="54479" e_stop="54665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCA</genome_strand>
        <mrna_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGGTCACCAGGTACTGGGGAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262937" ref_strand="+" ref_description="SGN-E262937 [cLEG-59-J6]">
      <seq>aacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccangtactgggaaaactatgcttgcaaaggctggtgctcatcacactacggccgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52066" stop="54963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52366" g_stop="52869" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54663" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="689" r_length="185" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E262937" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52366" e_stop="52869"/>
          <exon e_start="54479" e_stop="54663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTT</genome_strand>
        <mrna_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCANGTACTGGGAAAACTATGCTTGCAAAGGCTGGTGCTCATCACACTACGGCCGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262645" ref_strand="+" ref_description="SGN-E262645 [cLEG-63-J18]">
      <seq>aacttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52066" stop="53097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52366" g_stop="52797" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E262645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52366" e_stop="52797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGAT</genome_strand>
        <mrna_strand>AACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567890" ref_strand="+" ref_description="SGN-E567890 [12087]">
      <seq>atttttttccatttccaacaatggcatcagccatgcttctcggatccaaagccgacaccagagctaccggcaactcgacctggacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctggaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctacttgatgttttgcctccgtgaggctgactcgagtatttcgctggcttagtcaatcagagaagcctgatgttacctacaacgatatggggaggatgtgacattcaaacagcaggaaaattcgtgaggcctgttgagtaacctttggactcatcatgagttgtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52067" stop="54859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52367" g_stop="52869" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54559" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="595" r_length="86" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E567890" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52367" e_stop="52869"/>
          <exon e_start="54479" e_stop="54559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTC-GATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCT-GACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCT-GAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAG-AATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCC-TGAGGCTGACTCGAGTATTTCGCT-GCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATAT-TGGAGGATGTGACATTCAAA-AGCAGG-AAATTCGTGAGG-CTGTTGAGTTACCTTT-GACTCATCATGAGTTGTACAAG</genome_strand>
        <mrna_strand>ATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTACTTGATGTTTTGCCTCCGTGAGGCTGACTCGAGTATTTCGCTGGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGGGAGGATGTGACATTCAAACAGCAGGAAAATTCGTGAGGCCTGTTGAGTAACCTTTGGACTCATCATGAGTTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561373" ref_strand="+" ref_description="SGN-E561373 [17355]">
      <seq>cttttttccacttccaacaatggcatcagccatggttctcgatccaaagccgacaccggagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgccacctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttaccttacaacgatattggaggatgtgacattcaaaagcaggaaatccgtgaggctgttgagtttacttttgactcatcatgagttgtacaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52068" stop="108034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52368" g_stop="52869" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54560" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="586" r_length="83" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E561373" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52368" e_stop="52869"/>
          <exon e_start="54479" e_stop="54560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACC-TACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAG-TTACCTTTGACTCATCATGAGTTGTACAAGC</genome_strand>
        <mrna_strand>CTTTTTTCCACTTCCAACAATGGCATCAGCCATGGTTCTCGATCCAAAGCCGACACCGGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCACCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATCCGTGAGGCTGTTGAGTTTACTTTTGACTCATCATGAGTTGTACAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205169" ref_strand="+" ref_description="SGN-E205169 [cLEC-16-J11]">
      <seq>ttttttccacttccaacaatggcatcagccatgattctcgatccagaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52069" stop="107979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52369" g_stop="52869" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54505" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="529" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E205169" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52369" e_stop="52869"/>
          <exon e_start="54479" e_stop="54505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCA-AAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAG</genome_strand>
        <mrna_strand>TTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAGAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336633" ref_strand="+" ref_description="SGN-E336633 [cTOE-4-J3]">
      <seq>ttttttccacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52069" stop="107978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52369" g_stop="52869" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54504" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="527" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E336633" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52369" e_stop="52869"/>
          <exon e_start="54479" e_stop="54504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAA</genome_strand>
        <mrna_strand>TTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480697" ref_strand="+" ref_description="SGN-E480697 [cSTD-14-N2]">
      <seq>tttttccattgccacaatggcatcaaccatgcttctcgagccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcggctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaacgacgaactgaagaatctccgccgtgaacattgacgggcacaggaagaggagaaacggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52070" stop="52919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52370" g_stop="52619" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E480697" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52370" e_stop="52619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGAT</genome_strand>
        <mrna_strand>TTTTTCCA-TTGCCACAATGGCATCAACCATGCTTCTCGAGCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGGCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAACGACGAACTGAAGAATCTCCGCCGTGAACATTGACGGGCACAGGAAGAGGAGAAACGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326454" ref_strand="+" ref_description="SGN-E326454 [cTOC-14-H2]">
      <seq>gcacttccaacaatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttattgtcacacgacgttccttacgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgacgtgaacatttacgggcgcatgaagaggcaaaacggatccaatcggtgccgttagtaattggccatttcatggagatgattgaccacaataacgccatagttggttcaactacgggaactaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctgtacatcgtcactcggatgctctagttgatgtattgcctcctgaggctgactcaagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcacgaaattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52076" stop="107990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52375" g_stop="52869" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54516" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="533" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E326454" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52375" e_stop="52869"/>
          <exon e_start="54479" e_stop="54516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCG</genome_strand>
        <mrna_strand>GCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATTGTCACACGACGTTCCTTACGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGACGTGAACATTTACGGGCGCATGAAGAGGCAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCATTTCATGGAGATGATTGACCACAATAACGCCATAGTTGGTTCAACTACGGGAACTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTGTACATCGTCACTCGGATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCAAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCACGAAATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310270" ref_strand="+" ref_description="SGN-E310270 [cTOA-1-E6]">
      <seq>caatggcatcagccatgattctcgatccaaaaccctcgccggagctacctgcaactcgacctgacttatggtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacctgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatcccatcggtgccgtttgtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctctacatcgtcactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52085" stop="53083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52385" g_stop="52783" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E310270" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310270" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52385" e_stop="52783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGA</genome_strand>
        <mrna_strand>CAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATGGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACCTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCCATCGGTGCCGTTTGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTCTACATCGTCACTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302762" ref_strand="+" ref_description="SGN-E302762 [cLEY-1-K7]">
      <seq>ctgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatggtacctacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52145" stop="53170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52445" g_stop="52869" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E302762" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52445" e_stop="52869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC</genome_strand>
        <mrna_strand>CTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGGTACCTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314366" ref_strand="+" ref_description="SGN-E314366 [cTOA-21-E23]">
      <seq>tgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcgcaggaagaggtaaaacggatccaatcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaagggttcgtgatgtgttccgtcttgccaaagaaatgctcctgccattatatttattgatgaggtagatgcatttgccactgcgagggttgatgctcaaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52146" stop="56636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52446" g_stop="52869" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="655" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56336" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="766" r_length="111" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E314366" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52446" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTG</genome_strand>
        <mrna_strand>TGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAAGGGTTCGTGATGTGTTCCGTCTTGCCAAAG-AAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCATTTGCCACTGCGAGGGTTGATGCTCAAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E556432" ref_strand="+" ref_description="SGN-E556432 [cTSD-3-H2]">
      <seq>ggatcccccgggctgcaggcgccatagttggttcactacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52374" stop="56928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52675" g_stop="52869" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="214" r_length="194" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="445" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="604" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="757" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56844" g_stop="56850" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="758" r_stop="764" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E556432" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E556432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52675" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56850"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTA</genome_strand>
        <mrna_strand>GCCATAGTTGGTTCA-CTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259710" ref_strand="+" ref_description="SGN-E259710 [cLEG-42-H7]">
      <seq>cgattaatcgggagctacttaagccttcggcttttgtggctttacatcgtcactcgaatgctctagttgatgtattgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcaagaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcaaaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52427" stop="56642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52727" g_stop="52869" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="374" r_length="231" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56342" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="492" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E259710" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52727" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTG</genome_strand>
        <mrna_strand>CGATTAATCGGGAGCTACTTAAGCCTTCGGCTTTTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCAAGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAAAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E699608" ref_strand="+" ref_description="SGN-E699608 [FA10CF10]">
      <seq>ctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52514" stop="110596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52814" g_stop="52869" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="287" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="446" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="599" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="683" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="57138" g_stop="57177" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="723" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E699608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52814" e_stop="52869"/>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTGTTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGTTTATAATATTTCTGTCTGCTATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAAAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCATTCGGTTTTACTTTATAGTGATTATGAGTTGTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGTTGAATGCAGGGTTTCCCATTACTTCTAAAGTTCATTGCCTTTATTAATTAATGAATTTTTAGAATTGATTTTTATGATAGGCTCACTAGGAGCTTGTACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCATTACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTGATTATTCAGCGAGTAAATCAGAAGGTGAATGCTGCTTTCAAGTTTCAATATAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTGTGAACACATTTTGTGACAGAATGACAATATTTTAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACATTTCAATAATAATTTTAAAACCAAGAGAAGAAACTCCTTTTCAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCACTGGTTGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCAGTTCCTACAGCCTCTCCGTGAAAAATAAGTACACCTGCAGCCATGACTTTCCCCTGGCCTTATTCAAAATCCTACTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTTATGTGTGCAGTACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAAGGGTGGTACAAGAAGCATGACATGATCTCAGAAGAATCAGAATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTCGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATACAAGGAACATCGGTGTGGAGTGCACAACTTGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAACGGCATTATGTTCTTATCCTAATATAAATGCCCGTTATATAAGCATGTATATGTGTCACATTACAGCTACAGGCAAGCAAGTGGAGATCTGATATATATAGGGCTGTTAATGTGCCTTCCTTCATATTCTTACTTTATCTTAATCTTGTTTTTTCCTCACAACAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGC</genome_strand>
        <mrna_strand>CTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231235" ref_strand="+" ref_description="SGN-E231235 [cLED-5-H5]">
      <seq>tacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54168" stop="56911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="241" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="400" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56474" g_stop="56611" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="538" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E231235" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231235" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAG</genome_strand>
        <mrna_strand>GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238488" ref_strand="+" ref_description="SGN-E238488 [cLED-17-I23]">
      <seq>tacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactgggagctgataggaggtccagcgtatcttgatggagttgcttaatcaaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54168" stop="56690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54479" g_stop="54709" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="241" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="400" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56474" g_stop="56480" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="407" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E238488" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238488" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54479" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACT-GGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATG</genome_strand>
        <mrna_strand>GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGGAGCTGATA-GGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258247" ref_strand="+" ref_description="SGN-E258247 [cLEG-49-P12]">
      <seq>agatcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54271" stop="56862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54571" g_stop="54709" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="298" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56474" g_stop="56562" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E258247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54571" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGG</genome_strand>
        <mrna_strand>AGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264700" ref_strand="+" ref_description="SGN-E264700 [cLEG-72-G10]">
      <seq>atcctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54273" stop="57207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54573" g_stop="54709" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="296" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="449" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56844" g_stop="56907" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="513" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E264700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54573" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTG</genome_strand>
        <mrna_strand>ATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726547" ref_strand="+" ref_description="SGN-E726547 [LA12AE08]">
      <seq>gtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactacggccgctttcataagggtggttggctcagaattcgttcagaagtacttgggtgagggtccgcgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaacatcaaatggtttgtaccattctangttccattacttgttcgttcagaaagtgcagcataagcagtcttactatccatttaagctgcttaagtatctcatcgtgaggggtgtttctgtagactttcggtcatattagtgcctcattctgcgggatggcttatttcctcatatattaactttgattttcgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="54300" stop="57863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54600" g_stop="54709" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515">
            <donor d_prob="0.860" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56225" g_stop="56383" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="269" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="422" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="506" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57138" g_stop="57563" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="932" r_length="426" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E726547" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>932</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54600" e_stop="54709"/>
          <exon e_start="56225" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGGAATACCATGAGCATTTTTTGTTATGCAATAATGTGTTGTTACTACGTACTAATCACCTATTGTTGATGATTCAGACTATTTGCACTGAGTTGTTTGAAATACAATTTCTTTTTTTGATGTTTTCCTTTCTATTGTATAGAAAAATTTGGAAGATAAGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTTATGTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTTATGAATATTACTTCTACCCCAAACTGTATGATATAATTCTATATGCTGTAATTAGCTTTTCTTTTTTATCGACATCAAAGATTAGGTTATTAATTTGTGTAAAAAAATAATTATAGATTACACTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACGTCGAATGTATTTGTTTAAATTTGCATTGCCATGGAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGGTAGTTGTAAACGGAATGGAAACATTGCTTGAAGGTACCATGACAACTAAAATTAACACACTCTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTAGTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCATGATAAAGATTGCCCAATATCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTTTCGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTCCCACAATTCCAACTTGTCATCGTAATAAGACTTTGTAGCAAGGGGCAACTGAAAGTAGAAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATATCATTGCATTCTTCTGCAGGAACTCCAAACTTTTATTCACACATTTGGCACCAAGCTGGATACTCTTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGAACCTACTAATATAGATCAGAAAAAGTATCTCCACAAAAAAGATATTTATCAGTAAAAATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTAAACATAATGTGCACGACCCATTCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCAATTTTAGTAGTCAACTGAGAAGCCACTAAGCTTTTTTTTCTTTTTGAGAAGTTTAAGGCAGACCATCTTTCTGTGGCCAATCGAGTAGAGCATTTCAATCACGTCAACATGCAGCTTGGAATGTACATTTTGTTGCTGCATTCTCCACAACTCTTCTATCTAAGATGCAACTTCAGTTCAAATTGCAATTTTCTGAGCCAAATTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGATTGTCCAAAAATGATGACAAGACTGCATTTGTTTCTATTGCTCAAACTTTACTTTCACCACTTATTATCTGACTGTTCAGGGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGA</genome_strand>
        <mrna_strand>GTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTANGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAACTTTGATTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E302763" ref_strand="+" ref_description="SGN-E302763 [cLEY-1-K7](-)">
      <seq>gatggagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgttttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtccaaaaaaaattaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56156" stop="57675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56365" g_stop="56383" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="173" r_length="154" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="0.96"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="257" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57138" g_stop="57367" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="487" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E302763" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56365" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTG-TTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTT</genome_strand>
        <mrna_strand>GATGGAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227624" ref_strand="+" ref_description="SGN-E227624 [cLEL-30-I11](-)">
      <seq>gagttgcttaatcaaatggatggatttgaccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56159" stop="57680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56369" g_stop="56383" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="168" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="252" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57138" g_stop="57387" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="502" r_length="250" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E227624" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56369" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTGCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTG</genome_strand>
        <mrna_strand>GAGTTGCTTAATCAA..........................................................................................ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220626" ref_strand="+" ref_description="SGN-E220626 [cLEL-12-J20](-)">
      <seq>gctaatcaaatggatggatttggccagactgtgaatgtgaaagttatcatggcaactaacagagctgatactttggatcctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56170" stop="57680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56374" g_stop="56383" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90">
            <donor d_prob="0.700" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56474" g_stop="56626" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="162" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="246" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="57138" g_stop="57387" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="496" r_length="250" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E220626" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56374" e_stop="56383"/>
          <exon e_start="56474" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTAATCAAGTAGGCTTCTACAAATTCCTGAAGTAATCCCAGAAGAACTTACAGTTTTTGCATTGTTTATGAGGTTTTCTTTTGGTATGTTATCTTCAGATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTG</genome_strand>
        <mrna_strand>GC-TAATCAA..........................................................................................ATGGATGGATTTGGCCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573225" ref_strand="-" ref_description="SGN-E573225 [32501]">
      <seq>tgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtctttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattacagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgactttgagttctataagtgatttgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgaagatttttttaattggtgtttttaatcgtactgctggtttgtcaaacatctaatggattgcactgttctagcttccattaattgttcgttcagaaagtgcagcataaacagtctagctatccatttaagctgcttaagtgtctcatcgtgaggggtgtgtctgtggactctttcagtcattttaatgccgcattctgtgggatggcttaattcctcatatataagctttgcagtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56230" stop="57858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56530" g_stop="56626" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="181" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57138" g_stop="57555" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="602" r_length="421" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E573225" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573225" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="56530" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAAT-AAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGA--CTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTG</genome_strand>
        <mrna_strand>TGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTCTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTACAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTTGAGTTCTATAAGTGATTTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGAAGATTTTTTTAATTGGTGTTTTTAATCGTACTGCTGGTTTGTCAAACATCTAATGGATTGCACTGTTCTAGCTTCCATTAATTGTTCGTTCAGAAAGTGCAGCATAAACAGTCTAGCTATCCATTTAAGCTGCTTAAGTGTCTCATCGTGAGGGGTGTGTCTGTGGACTCTTTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTTAATTCCTCATATATAAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461418" ref_strand="+" ref_description="SGN-E461418 [cPRO-8-K24]">
      <seq>caaaagaggcttgtttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattacagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgactttgagttctataagtgatttgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgaagatttttttaattggtgtttttaatcgtactgctggtttgtcaaacatctaatggattgcactgttctagcttccattaattgttcgttcagaaagtgcagcataaacagtctagctatccatttaagctgcttaagtgtctcatcgtgaggggtgtgtctgtggactctttcagtcattttaatgccgcattctgtgggatggcttaattcctcatatataagctttgcagtagttcattttacataacaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56306" stop="57858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56606" g_stop="56626" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="105" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57138" g_stop="57555" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="526" r_length="421" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E461418" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56606" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGAGGCTTGTTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAAT-AAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGA--CTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTG</genome_strand>
        <mrna_strand>CAAAAGAGGCTTGTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTACAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTTGAGTTCTATAAGTGATTTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGAAGATTTTTTTAATTGGTGTTTTTAATCGTACTGCTGGTTTGTCAAACATCTAATGGATTGCACTGTTCTAGCTTCCATTAATTGTTCGTTCAGAAAGTGCAGCATAAACAGTCTAGCTATCCATTTAAGCTGCTTAAGTGTCTCATCGTGAGGGGTGTGTCTGTGGACTCTTTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTTAATTCCTCATATATAAGCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220507" ref_strand="+" ref_description="SGN-E220507 [cLEL-12-J20](-)">
      <seq>ggcttgttttttcaggtctgtactgctaagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56541" stop="57680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56613" g_stop="56626" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="15" r_length="15" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.762" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56844" g_stop="56927" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="99" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57138" g_stop="57387" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="349" r_length="250" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E220507" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>348</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56613" e_stop="56626"/>
          <exon e_start="56844" e_stop="56927"/>
          <exon e_start="57138" e_stop="57387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTG-TTTTTCAGGTAGAATTTGAAAGATTTTGCGCTCAGGACCTTCTTCAACCCTATTTCTCGTTAGCTAACAAATAGAAATTAAGATTTGAAAAATATTAAAGGAAGTTATGATAGATTTGGCTTCTGGCTTCTAAATTGTGCTCTCACCCCTTATGTTATATTGTCCCGGTATTTCCATTTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTG</genome_strand>
        <mrna_strand>GGCTTGTTTTTTCAG.........................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353007" ref_strand="+" ref_description="SGN-E353007 [cTOS-14-I4]">
      <seq>taagatgaacttaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaacatcaaatggtttgtaccattctaggttccattacttgttcgttcagaaagtgcagcataagcagtcttactatccatttaagctgcttaagtatctcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56555" stop="57774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56855" g_stop="56927" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57138" g_stop="57474" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="410" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E353007" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56855" e_stop="56927"/>
          <exon e_start="57138" e_stop="57474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTACACTTCATCTATTTTTCGACTGATAACAGGATGATTCACTACTGATTCAAAATGTTGTCGTCTAGTGTTAAGACTAAGTTGTTCTTAATTTTGCTGCCATCTATTTTGATCCTTCTATTTTTAAAATGTGAACGACCTTTATAATTGAAGTGCCAATTTGACCAACACGACTGTGATGCATGTTGCAATATCTGCAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATC</genome_strand>
        <mrna_strand>TAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG..................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246077" ref_strand="+" ref_description="SGN-E246077 [cLEF-40-C19]">
      <seq>gttttttttttttttttttgaggaaataagccatcccgcagaatgaggcactaatatgaccgaaagtctacagaaacacccctcacgatgagatacttaagcagcttaaatggatagtaagactgcttatgctgcactttctgaacgaacaagtaatggaacctagaatggtacaaaccatttgatgtttgacaaaccagcagtaccattaaaaacttattaaaaagaatctgcagaggtagtgtacaaggtcgacctctaaaatatttgctcatctacttttacagatcacttatagaactcgaaatcagtgtccggcttcttcacattggtcctgtaacccttttcaaagtccttggggagtatgacatatcgattctttcgcactgcatgcatacctgcttcctgacatatagctgcaatctgcagatattgcaacatgcatcacagtcgtgttggtcaaattggcacttcaattataaaggtcgttcacattttaaaaatagaaggatcaaaatagatggcagcaaaattaagaacaacttagtcttaacactagacgacaacattttgaatcagtagtgaatcatcctgttatcagtcgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64538" stop="56653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58086" g_stop="58070" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.706"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58069" i_stop="57544" i_length="526">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57543" g_stop="56953" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="608" r_length="591" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E246077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58086" e_stop="58070"/>
          <exon e_start="57543" e_stop="56953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTTTTTTCAATTATATCTTTAAATAATATTTCAAAATGATACTTTATTCTTTACCTTAATTGTTTAAATCTGGTCAAACCTCCTAACCTAGAATAATTAAGGATATTTAAGTAAATTTATAATTACAAATAATTAAAATATTATTAAACAACAACAAACAATACACTCTAACCAAACATTGTATCTATCATAATAAAGTACAGTATAATAGAATACAATTTCACATAATACATTATGAAACAATAGGTAACAATAATCCAAACAAAGTGTATATGTACTTTTCAAATGTGTAAACTTTAATTTATAACCCATCCTTTCGACATTTTAGATCTACCTCATCTTTTGTAACTTCTATGGTGCACGTATGGACCGGTGCATCAGTAAATCGACGCAAAACATAATCAAGCTATCGAAAAACAGACGCAACTTATTTTATTTCAATATTGCTACTTGCACCTTCTGGTGAATGTAGTCAAGACATAGGCATCGGTAAATGAAAAGAGTAATGAAACAGAAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATCTGCAGATATTGCAACATGCATCACAGTCGTGTTGGTCAAATTGGCACTTCAATTATAAAGGTCGTTCACATTTTAAAAATAGAAGGATCAAAATAGATGGCAGCAAAATTAAGAACAACTTAGTCTTAACACTAGACGACAACATTTTGAATCAGTAGTGAATCATCCTGTTATCAGTCGAAAA</genome_strand>
        <mrna_strand>GTTTTTTTTTTTTTTTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATCTGCAGATATTGCAACATGCATCACAGTCGTGTTGGTCAAATTGGCACTTCAATTATAAAGGTCGTTCACATTTTAAAAATAGAAGGATCAAAATAGATGGCAGCAAAATTAAGAACAACTTAGTCTTAACACTAGACGACAACATTTTGAATCAGTAGTGAATCATCCTGTTATCAGTCGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290550" ref_strand="+" ref_description="SGN-E290550 [cLES-20-M12]">
      <seq>ttttttgaaagtcgaaaatcaaagctaatatatgaggaaataagccatcccgcagaatgaggcactaatatgaccgaaagtctacagaaacacccctcacgatgagatacttaagcagcttaaatggatagtaagactgcttatgctgcactttctgaacgaacaagtaatggaacctagaatggtacaaaccatttgatgtttgacaaaccagcagtaccattaaaaacttattaaaaagaatctgcagaggtagtgtacaagggcgacctctaaaatatttgctcatctacttttacagatcacttatagaactcgaaatcagtgtccggcttcttcacattggtcctgtaacccttttcaaagtccttggggagtatgacatatcgattctttcgcactgcatgcatacctgcttcctgacatatagctgcaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="57868" stop="56837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57574" g_stop="57137" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E290550" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57574" e_stop="57137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAGAAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATC</genome_strand>
        <mrna_strand>TTTTTTGAAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGGCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594149" ref_strand="-" ref_description="SGN-E594149 [37395]">
      <seq>tttttttttttttttttttttttttttttttttttttttttttgacaaaccagcagtacgattaaaaacaccaattaaaaaaatcttcagaggtagtgtacaaggtcgacctctaaaatatttgctcatctacttttacaaatcacttatagaactcgaagtcagtgtccggcttcttcacattggtcctgtaacccttttcaaagtccttggggagtatgacatatcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64540" stop="56884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58109" g_stop="58070" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.600"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58069" i_stop="57374" i_length="696">
            <donor d_prob="0.900" d_score="0.60"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57373" g_stop="57184" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="231" r_length="191" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E594149" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>230</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E594149" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58109" e_stop="58070"/>
          <exon e_start="57373" e_stop="57184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTGTTCCCATTCTTGCTTGATTTCTTTTTTCAATTATATCTTTAAATAATATTTCAAAATGATACTTTATTCTTTACCTTAATTGTTTAAATCTGGTCAAACCTCCTAACCTAGAATAATTAAGGATATTTAAGTAAATTTATAATTACAAATAATTAAAATATTATTAAACAACAACAAACAATACACTCTAACCAAACATTGTATCTATCATAATAAAGTACAGTATAATAGAATACAATTTCACATAATACATTATGAAACAATAGGTAACAATAATCCAAACAAAGTGTATATGTACTTTTCAAATGTGTAAACTTTAATTTATAACCCATCCTTTCGACATTTTAGATCTACCTCATCTTTTGTAACTTCTATGGTGCACGTATGGACCGGTGCATCAGTAAATCGACGCAAAACATAATCAAGCTATCGAAAAACAGACGCAACTTATTTTATTTCAATATTGCTACTTGCACCTTCTGGTGAATGTAGTCAAGACATAGGCATCGGTAAATGAAAAGAGTAATGAAACAGAAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAAC-TTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACAAACCAGCAGTACGATTAAAAACACCAATTAAAAAAATCTTCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAAATCACTTATAGAACTCGAAGTCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351323" ref_strand="-" ref_description="SGN-E351323 [cTOS-12-C11]">
      <seq>ttttttttttttttttttttttttntnnnnntcggaaaatcaaagctaatatatgaggaaataagccatcccgcagaatgaggcactaatatgaccgaaagtctacagaaacacccctcacgatgagatacttaagcagcttaaatggatagtaagactgcttatgctgcactttctgaacgaacaagtaatggaacctagaatggtacaaaccatttgatgtttgacaaaccagcagtaccattaaaaacttattaaaaagaatctgcagaggtagtgtacaaggtcgacctctaaaatatttgctcatctacttttacagatcacttatagaactcgaaatcagtgtccggcttcttcacattggtcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="64540" stop="56925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58096" g_stop="58070" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.593"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58069" i_stop="57568" i_length="502">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57567" g_stop="57225" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="371" r_length="344" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E351323" ref_strand="-">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="58096" e_stop="58070"/>
          <exon e_start="57567" e_stop="57225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTTGCTTGATTTCTTTTTTCAATTATATCTTTAAATAATATTTCAAAATGATACTTTATTCTTTACCTTAATTGTTTAAATCTGGTCAAACCTCCTAACCTAGAATAATTAAGGATATTTAAGTAAATTTATAATTACAAATAATTAAAATATTATTAAACAACAACAAACAATACACTCTAACCAAACATTGTATCTATCATAATAAAGTACAGTATAATAGAATACAATTTCACATAATACATTATGAAACAATAGGTAACAATAATCCAAACAAAGTGTATATGTACTTTTCAAATGTGTAAACTTTAATTTATAACCCATCCTTTCGACATTTTAGATCTACCTCATCTTTTGTAACTTCTATGGTGCACGTATGGACCGGTGCATCAGTAAATCGACGCAAAACATAATCAAGCTATCGAAAAACAGACGCAACTTATTTTATTTCAATATTGCTACTTGCACCTTCTGGTGAATGTAGTCAAGACATAGGCATCGGTAAATGAAAAGAGTAATGAAACAGAAAGTC-GAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTNTN......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NNNNTCGGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353050" ref_strand="+" ref_description="SGN-E353050 [cTOS-14-H1]">
      <seq>aggaccaatgtgaagaagccggacactgatttcgagttctataagtgatctgtaaaagtagatgagcaaatattttagaggtcgaccttgtacactacctctgcagattctttttaataagtttttaatggtactgctggtttgtcaaacatcaaatggtttgtaccattctaggttccattacttgttcgttcagaaagtgcagcataagcagtcttactatccatttaagctgcttaagtatctcatcgtgaggggtgtttctgtagactttcggtcatattagtgcctcattctgcgggatggcttatttcctcatatattagctttgattttcgaaaaannaaaanaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56925" stop="57863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57225" g_stop="57563" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="346" polyA_stop="357"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E353050" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57225" e_stop="57563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGA</genome_strand>
        <mrna_strand>AGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727914" ref_strand="+" ref_description="SGN-E727914 [LA16AE07]">
      <seq>ccattttcaccatatcttgcctggttaagtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatcaacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattgatagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattgggtcatataagtattgtactgatatgtatgtgacttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58295" stop="59653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58521" g_stop="58524" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58525" i_stop="58591" i_length="67">
            <donor d_prob="0.541" d_score="0.00"/>
            <acceptor a_prob="0.781" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58592" g_stop="59353" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="766" r_length="762" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E727914" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58521" e_stop="58524"/>
          <exon e_start="58592" e_stop="59353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGTAGTACTCCATATATATAGTAGATTTGTATCTATACAAAACCCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGG</genome_strand>
        <mrna_strand>CCAT...................................................................TTTCACCATATCTTGCCTGGTTAAGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCAACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGATAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGGTCATATAAGTATTGTACTGATATGTATGTGACTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719968" ref_strand="+" ref_description="SGN-E719968 [FC09BG03]">
      <seq>atcggccgaattgccctctttgaaaccctattctccagcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcaaacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcaaagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttgaagaatcctgagactataccaagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58267" stop="59680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58554" g_stop="59380" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="827" r_length="827" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E719968" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58554" e_stop="59380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATACAAAACCCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTG</genome_strand>
        <mrna_strand>ATCGGCCGAATTGCCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAAACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAAAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGAAGAATCCTGAGACTATACCAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720547" ref_strand="+" ref_description="SGN-E720547 [FC11AE09]">
      <seq>gggcgaattggcggccaatcggccgaattgcctctttgaaaccctattctccagcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttggagaatcctgagactataccaagttctgttttttctcaatagatgaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58268" stop="59703"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58567" g_stop="59403" g_length="837"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="866" r_length="837" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E720547" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>837</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720547" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58567" e_stop="59403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACT</genome_strand>
        <mrna_strand>GCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E720074" ref_strand="+" ref_description="SGN-E720074 [FC09DA05]">
      <seq>aatcggccgaattcccatggggatccgatgcctctttgaaaccctattctccagcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58268" stop="59645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58567" g_stop="59345" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="808" r_length="779" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E720074" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E720074" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58567" e_stop="59345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATG</genome_strand>
        <mrna_strand>GCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340088" ref_strand="+" ref_description="SGN-E340088 [cTOF-3-N21]">
      <seq>cctattctccagcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattggggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgatttttgtttgaaattattggttcatataagtattgtactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58280" stop="59636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58580" g_stop="59336" g_length="757"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="759" r_length="759" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E340088" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58580" e_stop="59336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATT-GGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGA-TTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTG</genome_strand>
        <mrna_strand>CCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706209" ref_strand="+" ref_description="SGN-E706209 [FA29BC10]">
      <seq>attctccagcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58283" stop="59624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58583" g_stop="59324" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E706209" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58583" e_stop="59324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATA</genome_strand>
        <mrna_strand>ATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316724" ref_strand="+" ref_description="SGN-E316724 [cTOB-5-P24]">
      <seq>tccagcccctccttctcttccctggttctgcagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaaccccaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgctgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58287" stop="59313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58587" g_stop="59013" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E316724" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58587" e_stop="59013"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGAC</genome_strand>
        <mrna_strand>TCCAGCCCCTCCTTCTCTTCCCTGGTTCTGCAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCCAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGCTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733158" ref_strand="+" ref_description="SGN-E733158 [LB04AE07]">
      <seq>cctgcccctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttggagaatcctgagactataccaagttctgtttttttctcaatagatgaatactttcagtatggggtgattatatgtatacgatacgaaccgtgttagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58288" stop="59749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58588" g_stop="59448" g_length="861"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="862" r_length="862" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="863" polyA_stop="872"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E733158" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58588" e_stop="59448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTG-TTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGT</genome_strand>
        <mrna_strand>CCTGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698011" ref_strand="+" ref_description="SGN-E698011 [FA04DH10]">
      <seq>cctccttctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttggagaatcctgagactataccaagttctgttttttctcaatagatgaatactttcagtatggggtgattatatgtatacgatacaaaccgtgttagtatttggtttttgttatagcagggtaatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58294" stop="59786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58594" g_stop="59489" g_length="896"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="896" r_length="896" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E698011" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>896</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58594" e_stop="59489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGTATTTGTTTTTTGTTATAGCAGTGTTATCTAATTATACATGC</genome_strand>
        <mrna_strand>CCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACAAACCGTGTTAGTATTTGGTTTTTGTTATAGCAGGGTAATCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610393" ref_strand="+" ref_description="SGN-E610393 [57553]">
      <seq>ttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgatcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaaccattaagattgctagagattcactttgtagtctcattatggggtctccctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58314" stop="59506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58596" g_stop="59206" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E610393" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58596" e_stop="59206"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCTCTTCCCTGGTTCT-GTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAA-CATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCT-CCTGCT</genome_strand>
        <mrna_strand>TTGTTCT-GTCCGTGTGCCTGGCAGCCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGATCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACCATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712307" ref_strand="+" ref_description="SGN-E712307 [FB04BH12]">
      <seq>ctcttccctggttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttggagaatcctgagactataccaagttctgttttttctcaatagatgaatactttcagtatggggtgattatatgtatacgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58301" stop="59735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58601" g_stop="59435" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="835" r_length="835" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E712307" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58601" e_stop="59435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATAC</genome_strand>
        <mrna_strand>CTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714649" ref_strand="+" ref_description="SGN-E714649 [FB12AB12]">
      <seq>gttctgtagccatggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttactgtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtgacttggagaatcctgagactataccaagttctgttttttctcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58311" stop="59699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58611" g_stop="59400" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E714649" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58611" e_stop="59400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAAT</genome_strand>
        <mrna_strand>GTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACTGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGACTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455975" ref_strand="+" ref_description="SGN-E455975 [cSTS-28-M3]">
      <seq>gcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58314" stop="59549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58611" g_stop="59249" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E455975" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58611" e_stop="59249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCG</genome_strand>
        <mrna_strand>GCCTGGCAGCCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603414" ref_strand="+" ref_description="SGN-E603414 [56503]">
      <seq>aaagtattcatctattgaaaaaaacataacttggtaaagtctcaggattctccaagccacatatcagtacaaaaatacttaccaataatttccaacaaaatcaaaatttgatacttaaaacatcctacaaaaccaataacaaaaattaaagcatctcggcccgagcagtaacagctctgagcttggaataaaccttaccagcaggagaccccataatgagactacaaagtgaatctctagcaatcttaatgttcaaaaacgatcccaatatatgtatcttgctatctgcaattactatcctagtcttcgtcgaattctctatagcaaatttcgtctttcctcctttcccagacaatctaccaatagccctagacaaatgctcacctcttagcgtcttcacatccttgatctcaaacgaatccacatataactcatccaaacggagcaaagcaacagcatcacaaacatcaaaccctagcatgaaagcatgaacgaaatcagcgcacttctgtaggttgctgatgtcgggagtatcggttcgggttttcagctcgacccgacgtttcttgagattcattcggatatcaatcttcatctgctcgaagattggattgtagatttccatccatactttcttcagtggagtgtaccgatgctgtgggactgtaactttgcgaaactggacatggccgtctgagatttcgtgggccttttagaggttgaaagctgcgtttcgccggtaaggttgccgccggttgctcagcctcggattgtcaatttccatggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59705" stop="58318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59405" g_stop="58617" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="789" r_length="789" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E603414" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59405" e_stop="58617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTATTCATCTATTGAGAAAAAACAGAACTTGGTATAGTCTCAGGATTCTCCAAGCCACATACATATCAGTACAATACTTATATGAACCAATAATTTCAAACAAAATCAAAATTTGATAATTAAAACATCCT---ATA--AAT--CAA-AATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAGTAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATTTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGCATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGTGTCTTCACATCCTTGATCTCGAAGGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAGACATCAAACCCTAGCATGAAAGCATGAACAAAATCAGCGCACTTTTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCAACCCGACGCTTCTTGAGATTCATTCGGATGTCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAGTGTACCGATGCTGTGGGACTGTAACTTTGCGAAACTGGACATGGCCGTCTGAGATTTCGTGGGCC-TTTAGAGGTTGAAAGTTGGGTTTCGCCGGTAAGGTTGCCGGCGGTTGCTCAGCCCTCAGATTGTCAATATCCATGGCTA</genome_strand>
        <mrna_strand>AAAGTATTCATCTATTGA-AAAAAACATAACTTGGTAAAGTCTCAGGATTCTCCAAG-C-C--ACATATCAGTACAA-AAATACTT--ACCAATAATTTCCAACAAAATCAAAATTTGATACTTAAAACATCCTACAAAACCAATAACAAAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAATAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATCTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGAATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGCGTCTTCACATCCTTGATCTCAAACGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAAACATCAAACCCTAGCATGAAAGCATGAACGAAATCAGCGCACTTCTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCGACCCGACGTTTCTTGAGATTCATTCGGATATCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAGTGTACCGATGCTGTGGGACTGTAACTTTGCGAAACTGGACATGGCCGTCTGAGATTTCGTGGGCCTTTTAGAGGTTGAAAGCTGCGTTTCGCCGGTAAGGTTGCCGCCGGTTGCTCAG-CCTCGGATTGTCAATTTCCATGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473969" ref_strand="+" ref_description="SGN-E473969 [cSTB-34-G10]">
      <seq>cagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58318" stop="59288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58617" g_stop="58988" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E473969" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58617" e_stop="58988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATT</genome_strand>
        <mrna_strand>CAGCCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462127" ref_strand="+" ref_description="SGN-E462127 [cPRO-10-P9]">
      <seq>ctcctgcccctccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgggccgagatgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58286" stop="59559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59259" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="687" r_length="640" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E462127" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTA</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E454135" ref_strand="+" ref_description="SGN-E454135 [cSTS-22-A22]">
      <seq>ttctcctgcccctccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcaaagctgttactgctcgggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58284" stop="59549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59249" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="679" r_length="630" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E454135" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E454135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCG</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAAAGCTGTTACTGCTCGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599913" ref_strand="+" ref_description="SGN-E599913 [52912]">
      <seq>tgcccctccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcaagctgttactgctcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58291" stop="59545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59245" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="668" r_length="625" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E599913" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGG</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCA-AGCTGTTACTGCTCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E449902" ref_strand="+" ref_description="SGN-E449902 [cSTS-7-H16]">
      <seq>cctgcccctccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcactacggccatgtccagtttcgcaaagttacagtcccacagcatccgtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtagggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctacggtttgatgtttgtgatgctgttgctttgctccggtaggatgagttatatgtggattcgtttgagatcaatgatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagcaattgcagatagcaagatacatatattgcgatcgactgtgaacattaagattgctagagattcactatgcagactcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58288" stop="59491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59191" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="618" r_length="573" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E449902" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E449902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59191"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCA-GACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATT</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCACTACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCCGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTAGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTACGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGGTAGGATGAGTTATATGTGGATTCGTTTGAGATCAATGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGCAATTGCAGATAGCAAGATACATATATTGCGATCGACTGTGAACATTAAGATTGCTAGAGATTCACTATGCAGACTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402648" ref_strand="+" ref_description="SGN-E402648 [PPC-8-G2]">
      <seq>gattctcctgcccctccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58283" stop="59397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59097" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="529" r_length="478" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E402648" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGAC</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571875" ref_strand="+" ref_description="SGN-E571875 [30940]">
      <seq>cttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttggtccgtttggatgagttatatgtggattcgtttgagatcaaggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58314" stop="59307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="59007" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="423" r_length="388" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E571875" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E571875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="59007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGT</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGGTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405440" ref_strand="+" ref_description="SGN-E405440 [PPC-18-E6]">
      <seq>gccttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58314" stop="59282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="58982" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="400" r_length="363" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E405440" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="58982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATG</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473277" ref_strand="+" ref_description="SGN-E473277 [cSTB-31-F8]">
      <seq>cttctcttcccttgttctgtccgtgtgcctggcagccatggaaattgacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58314" stop="59251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58620" g_stop="58951" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="367" r_length="332" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E473277" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58620" e_stop="58951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCT</genome_strand>
        <mrna_strand>CCATGGAAATTGACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343035" ref_strand="+" ref_description="SGN-E343035 [cTOF-11-A16]">
      <seq>atggatattgacaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattntgatttataggatgttttaattatcaaattttgatttttgttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58322" stop="59609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58622" g_stop="59301" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="686" polyA_stop="700"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E343035" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58622" e_stop="59301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTT</genome_strand>
        <mrna_strand>ATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTNTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324444" ref_strand="+" ref_description="SGN-E324444 [cTOC-6-K17]">
      <seq>tggatattgtcaatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctaaggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58323" stop="59456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58623" g_stop="59156" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E324444" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324444" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58623" e_stop="59156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACA</genome_strand>
        <mrna_strand>TGGATATTGTCAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAAGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600552" ref_strand="+" ref_description="SGN-E600552 [53566]">
      <seq>gacaatccgagggctgagcaaccggcggcaaccttaccggcgaaacccagctttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggataggtaattgcagatagcaagatacatatattgggatcgtttttgaaccattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaacggtttattccaaggctcagagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58331" stop="59535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58631" g_stop="59235" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E600552" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58631" e_stop="59235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATA-GTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAA-CATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAA-GGTTTACTCCAA-GCTCAGAGCTGT</genome_strand>
        <mrna_strand>GACAATCCGAGGGCTGAGCAACCGGCGGCAACCTTACCGGCGAAACCCAGCTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACCATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAACGGTTTATTCCAAGGCTCAGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589182" ref_strand="+" ref_description="SGN-E589182 [42750]">
      <seq>gccatggaaattgacaatctgagggctgagcaaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggacatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgttcgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgcgccgagatgctttaatttttgttattggatttgtaggatgttttaagtatcaaattttgatttcgttggaaattatcggttcatataagtattgtactgatatgtggcttggagaatcctgatactttaccaagttatgttttttcaatagatgaatactttaagtatggggtgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58319" stop="59721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58632" g_stop="59421" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E589182" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E589182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58632" e_stop="59421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAA------TT-TT-GATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTA</genome_strand>
        <mrna_strand>GCCAT-GGA-AATTGACAATCTGAGGGCTGAGCAACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGACATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTCGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGCGCCGAGATGCTTTAATTTTTGTTATTGGATTTGTAGGATGTTTTAAGTATCAAATTTTGATTTCGTTGGAAATTATCGGTTCATATAAGTATTGTACTG--A--TATGTGGCTTGGAGAATCCTGATACTTTACCAAGTTATG-TTTTT-TCAATAGATGAATACTTTAAGTATGGGGTGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342659" ref_strand="+" ref_description="SGN-E342659 [cTOF-7-L7]">
      <seq>caatctgagggctgagcaaccgccggcaaccttaccggcgaaacccaactttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaataccatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatgggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58333" stop="59549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58633" g_stop="59249" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E342659" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342659" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58633" e_stop="59249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATA-CATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTAT-GGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCG</genome_strand>
        <mrna_strand>CAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACCATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E602664" ref_strand="+" ref_description="SGN-E602664 [55734]">
      <seq>ctattgaaaaaaacataacttggtaaagtatcaggattctccaagccacatatcagtacaatacttatatgaaccaataatttccaacaaaatcaaaatttgatacttaaaacatcctacaaaaccaataccaaaaattaaagcatctcggcccgagcagtaacagctctgagcttggaataaaccttaccagcaggagaccccataatgagactacaaagtgaatctctagcaatcttaatgttcaaaaacgatcccaatatatgtatcttgctatctgcaattactatcctagtcttcgtcgaattctctatagcaaatttcgtctttcctcctttcccagacaatctaccaatagccctagacaaatgctcacctcttagcgtcttcacatccttgatctcaaacgaatccacatataactcatccaaacggagcaaagcaacagcatcacaaacatcaaaccctagcatgaaagcatgaacgaaatcagcgcacttctgtaggttgctgatgtcgggagtatcggttcgggttttcagctcgacccgacgtttcttgagattcattcggatatcaatcttcatctgctcgaagattggattgtagatttccatccatactttcttcagtggagtgtaccgatgctgtgggactgtaaactttgcgaaactggacatggccgtctgagatttcgtgggcctttaaaggttgaaagctgggtttcgcccggtaaggtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59694" stop="58357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59394" g_stop="58657" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E602664" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59394" e_stop="58657"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTGAGAAAAAACAGAACTTGGTATAGTCTCAGGATTCTCCAAGCCACATACATATCAGTACAATACTTATATGAACCAATAATTTCAAACAAAATCAAAATTTGATAATTAAAACATCCT---ATA--AAT--C-AAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAGTAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATTTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGCATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGTGTCTTCACATCCTTGATCTCGAAGGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAGACATCAAACCCTAGCATGAAAGCATGAACAAAATCAGCGCACTTTTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCAACCCGACGCTTCTTGAGATTCATTCGGATGTCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAGTGTACCGATGCTGTGGGACTGT-AACTTTGCGAAACTGGACATGGCCGTCTGAGATTTCGTGGGCCTTTAGAGGTTGAAAGTTGGGTTTCG-CCGGTAAGG-TTGCC</genome_strand>
        <mrna_strand>CTATTGA-AAAAAACATAACTTGGTAAAGTATCAGGATTCTCCAAGCCA----CATATCAGTACAATACTTATATGAACCAATAATTTCCAACAAAATCAAAATTTGATACTTAAAACATCCTACAAAACCAATACCAAAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAATAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATCTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGAATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGCGTCTTCACATCCTTGATCTCAAACGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAAACATCAAACCCTAGCATGAAAGCATGAACGAAATCAGCGCACTTCTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCGACCCGACGTTTCTTGAGATTCATTCGGATATCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAGTGTACCGATGCTGTGGGACTGTAAACTTTGCGAAACTGGACATGGCCGTCTGAGATTTCGTGGGCCTTTAAAGGTTGAAAGCTGGGTTTCGCCCGGTAAGGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402521" ref_strand="+" ref_description="SGN-E402521 [PPC-7-P16]">
      <seq>tttcaacctctaaaggcccacgaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgatatccgaatgaatctcaagaaacgtcgggtcgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgggccgagatgctttaatttttgttattggttttgtaggatgttttaagtatcaaattttgattttgttggaaattattggtaagtatttttgtactgatatgtggcttggagaatcctgagactttaccaagttatgtttttttcaatagatgaatactttaagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58382" stop="59710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58682" g_stop="59409" g_length="728"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="728" r_length="728" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E402521" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58682" e_stop="59409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAA-TTTTG--A-----TTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGT</genome_strand>
        <mrna_strand>TTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGATATCCGAATGAATCTCAAGAAACGTCGGGTCGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTTGTTATTGGTTTTGTAGGATGTTTTAAGTATCAAATTTTGATTTTGTTGGAAATTATTGG-T-A-AGTATTTTTGTACTG--A--TATGTGGCTTGGAGAATCCTGAGACTTTACCAAGTTATGTTTTTT-TCAATAGATGAATACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342684" ref_strand="+" ref_description="SGN-E342684 [cTOF-7-H6]">
      <seq>gaaatctcagacggccatgtccagtttcgcaaagttacagtcccacagcatcggtacactccactgaagaaagtatggatggaaatctacaatccaatcttcgagcagatgaagattgacatccgaatgaatctcaagaagcgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttggctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctattgagaatgcgacgaagactaggatagtaattgcagatagcaaaaaacatatattgggatcgttnttgaacattaagattgctggagattcactttgtagtctcattatgggggtctcctgctggtaagggttactccaagctcagagctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58403" stop="59535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58703" g_stop="59235" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E342684" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58703" e_stop="59235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTAT-GGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGT</genome_strand>
        <mrna_strand>GAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGGCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATTGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAAAACATATATTGGGATCGTTNTTGAACATTAAGATTGCTGGAGATTCACTTTGTAGTCTCATTATGGGGGTCTCCTGCTGGTAAGGGTTACTCCAAGCTCAGAGCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595116" ref_strand="+" ref_description="SGN-E595116 [38382]">
      <seq>atataatcaccccatacttaaagtattcatctattgaaaaaaacataacttggtaaagtctcaggattctccgaagccacatatcagtgacaaaaatacttaccaagtaatttccaagcaaaatcaaaatttgatacttaaaacatcctacaaaaccaataacaaaaattaaagcatctcggcccgagcagtaacagctctgagcttggaataaaccttaccagcaggagaccccataatgagactacaaagtgaatctctagcaatcttaatgttcaaaaacgatcccaatatatgtatcttgctatctgcaattactatcctagtcttcgtcgaattctctatagcaaatttcgtctttcctcctttcccagacaatctaccaatagccctagacaaatgctcacctcttagcgtcttcacatccttgatctcaaacgaatccacatataactcatccaaacggagcaaagcaacagcatcacaaacatcaaaccctagcatgaaagcatgaacgaaatcagcgcacttctgtaggttgctgatgtcgggagtatcggttcgggttttcagctcgacccgacgtttcttgagattcattcggatatcaatcttcatctgctcgaagattggattgtagatttccatccatactttcttcagtggaagtgtacccgatggctgtgggacttgtaactttgcgaaactggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="59724" stop="58421"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59424" g_stop="58721" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E595116" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595116" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59424" e_stop="58721"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAATCACCCCATACTGAAAGTATTCATCTATTGAGAAAAAACAGAACTTGGTATAGTCTCAGGATTCTCCAAGCCACATACATATCAGT-ACAATACTTATATGAACCAATAATTT-CAAACAAAATCAAAATTTGATAATTAAAACATCCT---ATA--AAT--C-AAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAGTAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATTTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGCATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGTGTCTTCACATCCTTGATCTCGAAGGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAGACATCAAACCCTAGCATGAAAGCATGAACAAAATCAGCGCACTTTTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCAACCCGACGCTTCTTGAGATTCATTCGGATGTCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGG-AGTGTA-CCGAT-GCTGTGGGAC-TGTAACTTTGCGAAACTGGAC</genome_strand>
        <mrna_strand>ATATAATCACCCCATACTTAAAGTATTCATCTATTGA-AAAAAACATAACTTGGTAAAGTCTCAGGATTCTCCGAAGC-C--ACATATCAGTGACAA-AAATA-CTTACCAAGTAATTTCCAAGCAAAATCAAAATTTGATACTTAAAACATCCTACAAAACCAATAACAAAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAATAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATCTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGAATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGCGTCTTCACATCCTTGATCTCAAACGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAAACATCAAACCCTAGCATGAAAGCATGAACGAAATCAGCGCACTTCTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCGACCCGACGTTTCTTGAGATTCATTCGGATATCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAAGTGTACCCGATGGCTGTGGGACTTGTAACTTTGCGAAACTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E565098" ref_strand="+" ref_description="SGN-E565098 [3347]">
      <seq>tatccgaatgaatctcaagaaacgtcgggttgagctgaaaacccgaaccgatactcccgacatcagcaacctacagaagtgcgctgatttcgttcatgctttcatgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggattcgttcgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58523" stop="59397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58822" g_stop="59097" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E565098" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58822" e_stop="59097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGAC</genome_strand>
        <mrna_strand>TATCCGAATGAATCTCAAGAAACGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAGAAGTGCGCTGATTTCGTTCATGCTTTCATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCGTTCGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711600" ref_strand="+" ref_description="SGN-E711600 [FB02BG09]">
      <seq>cggttactcccgacatcagcaacctacaaaagtgcgctgattccgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58571" stop="64538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58869" g_stop="59344" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59345" i_stop="59669" i_length="325">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.160" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59670" g_stop="59690" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="497" r_length="21" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E711600" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58869" e_stop="59344"/>
          <exon e_start="59670" e_stop="59690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGTATTTGTTTTTTGTTATAGCAGTGTTATCTAATTATACATGCTTATCTTATATGATTATTTGCAATTCTTATGTGCTTTGTAAGATTATAAATATGATTATTGCAATAAGATTAGTTAGGTTACCAGTTCATATTTTCATTTTTATGTTAGTTAAGTTTCCAGTGCATGCGTACTCGTACTCCATTGTGGGATTACATTGTGTATGTTGTTCTATGTTCAAGTACACATAATATTCACACACT</genome_strand>
        <mrna_strand>CGGTTACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTCCGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTAA.....................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353939" ref_strand="+" ref_description="SGN-E353939 [cTOS-10-L2]">
      <seq>ctcccgacatcagcaacctacaaaagtgcgctgattttgttcatgctttcatgctagggtttgatgtctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtggcttggagaatcctgagactataccaagttctgttttttctcaatagatgaatactttcagtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58575" stop="59710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58875" g_stop="59409" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E353939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58875" e_stop="59409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGT</genome_strand>
        <mrna_strand>CTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244038" ref_strand="+" ref_description="SGN-E244038 [cLEE-1-B9]">
      <seq>acatcatcatcctacaaaagtgcgctgattttgttcatgctttcatgctaaggtttgatgtctgtgatgctgatgctttgctccgtttggatgagtgatatgtggattccttcaagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggcatattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58581" stop="59355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58881" g_stop="59055" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E244038" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>175</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58881" e_stop="59055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTC</genome_strand>
        <mrna_strand>ACATCATCATCCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAAGGTTTGATGTCTGTGATGCTGATGCTTTGCTCCGTTTGGATGAGTGATATGTGGATTCCTTCAAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGCATATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615418" ref_strand="+" ref_description="SGN-E615418 [65216]">
      <seq>catgctagggtttgatgtttgtgatgctgttgctttgctccgtttggatgagttatatgtggatgcgtttgagatcaaggatgtgaagacgctaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgggccgagatgctttaatttttgttattggttttgtaggatgttttaagtatcaaattttgattttgttggaaattattggtaagtatttttgtactgatatgtggcttggagaatcctgagactttaccaagttatgtttttttcaatagatgaatactttaagtatggggtgattatatgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58624" stop="59734"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58924" g_stop="59437" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E615418" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58924" e_stop="59437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAA-TTTTG--A-T--TTAT--AGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGA</genome_strand>
        <mrna_strand>CATGCTAGGGTTTGATGTTTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATGCGTTTGAGATCAAGGATGTGAAGACGCTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTTGTTATTGGTTTTGTAGGATGTTTTAAGTATCAAATTTTGATTTTGTTGGAAATTATTGG-T-A-AGTATTTTTGTACTG--A--TATGTGGCTTGGAGAATCCTGAGACTTTACCAAGTTATGTTTTTT-TCAATAGATGAATACTTTAAGTATGGGGTGATTATATGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355385" ref_strand="+" ref_description="SGN-E355385 [cTOS-25-I19]">
      <seq>tctgtgatgctgttgctttgctccgtttggatgagttatatgtggattccttcgagatcaaggatgtgaagacactaagaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaatgcgacgaagactaggatagtaattgcagatagcaaaatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttactccaagctcagagctgttactgctcgggccgagatgctttaattttgatttataggatgttttaattatcaaattttgattttgtttgaaattattggttcatataagtattgtactgatatgtatgtggcttggagaatcctgagactataccaagttctgttttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58641" stop="59688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58941" g_stop="59388" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E355385" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58941" e_stop="59388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCT</genome_strand>
        <mrna_strand>TCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564721" ref_strand="+" ref_description="SGN-E564721 [2970]">
      <seq>gaggtgagcatttgtctagggctattggtagattgtctgggaaaggaggaaagacgaaatttgctatagagaattcgacgaagactaggatagtaattgcagatagcaagatacatatattgggatcgtttttgaacattaagattgctagagattcactttgtagtctcattatggggtctcctgctggtaaggtttattccaagctcagagctgttactgctcgggccgagatgctttaatttttgttattggttttgtaggatgttttaagtatcaaattttgattttgttggaaattattggtaagtatttttgtactgatatgtggcttggagaatcctgagactttaccaagttatgtttttttcaatagatgaatactttaagtacacaaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="58719" stop="59710"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59019" g_stop="59409" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E564721" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E564721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59019" e_stop="59409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAA-TTTTG--A-----TTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGT</genome_strand>
        <mrna_strand>GAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATTCGACGAAGACTAGGATAGTAATTGCAGATAGCAAGATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTATTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTTGTTATTGGTTTTGTAGGATGTTTTAAGTATCAAATTTTGATTTTGTTGGAAATTATTGG-T-A-AGTATTTTTGTACTG--A--TATGTGGCTTGGAGAATCCTGAGACTTTACCAAGTTATGTTTTTT-TCAATAGATGAATACTTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470992" ref_strand="+" ref_description="SGN-E470992 [cSTB-21-F14]">
      <seq>ctcactcttcactttgtacttggcactaaacactcctccttcttctccattaacacagatccaaatctcttactacttcagctcaagctaaacgggtcgggtcgggtcttattctgcgcaaaatgtggttactgcaactcgatgaattcgatttgatgttcatgtttactgttaatttcacctcagaacctcagtattactcctagaacttcaagtgctttctctattttataggacgaccacaatactggcagcatagtggctttcaatctgttgaaggtttcctcatgagaatctaccacaccaatcaactgctacattctctttttgttgtagcaactcttctttcgctgtgccgtggtgatctaaactcagacaaacaagcccttcttgactttgctgcagcagtcccacatggctggaagatcaactgggatcctgccactcctatttgctcatcttgggtaggcgttacttgtagtaatgatggagcccatgtggtggaagtacgacttccaggagttggactcattggttcacttccaaaaaatacttttggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="62784" stop="65739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63084" g_stop="63312" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63313" i_stop="65112" i_length="1800">
            <donor d_prob="0.845" d_score="0.90"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65113" g_stop="65439" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="561" r_length="327" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E470992" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63084" e_stop="63312"/>
          <exon e_start="65113" e_stop="65439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTCTTCACTTTGTACTTTGCACTAAACACTCCTTCTTCTTCTCCATTAACACAGATCCAAATCTCTTACTACTTCAGCTCAAGCTAAAC--G--G-GTCGGGTCTTGTTCAGCGCAAAATGTGGTTACTGCAACTCGATGAATTTGATTTGATGTTCATCTTTACTGTTAATTTCATCTCAGAACCTCACTATTACTCCTAATACTTGAAGTGCTTTCTCGATTTTATAGGTAATTTCACTGCGATTACATAATGTTTGTTGAATTTTATAATTTTGTATTTATTTTCTGCTAATTTTGGTAGCAGATCTGTTTGCTTATTTGATTTCTATTTGTTTGGCATTGTTAGATTGAACGGTCAAGTTTTATTTATTTTGAAATATGATTTTTGAAGGTTTTCTGATAGTATTTTTTTTAAATTTTTTTTGAGTAGCTTTAAATTTGATTTTTAGAAATTAATTAGGAAATCTATGATGAATTTATTTATTTTTAACTTGTATATATGGTATGATTTTCCGGCCTGCAACCCTGGCTCCGGCGTGGACTATTAAGTAGCAAGACCTGTATGTTGTTCAGTCTTCAGTGTCTGCTTCTTTGATAATGTGGAAGTACAAAGAGTTGAGAAATTGAATATGTTGTTGGTCCTTATGAACTATCATTGGATTATATTTGTGTGATGGAAGCTTAGGATTCCCTATTACTGGGACCTCATATGAGTTGGGGTTGTTCAATAGTCTTAATTAACCCAACTCTCTTTGACATTTACTTTAGAGAAGAATTGTGAATGTGGTAATAGGTAACCCCAACCCCCAAAAATAATAATAATAAAAATTTCATGATTTGGTAGATTTTTTTGATGTAGTTCTTCTTCATGAACTGTTTCAAGCTCCAACCTTGAATAAGCATTATCATGTCATGAAGGTTGAAAAACTTGTGATTAAATGGGTTAGTCCAGTCCCGGGTTGACTTTGAAGGAGTGGTTATTTTTTTTCCAGTTGCTTATTAGATACTATCACGTTAGAGTACTTAAGTGCTAGCTATTTGTATGTATTTTTTTTCTCAAAACATCTCTTGTTTATTAATAATATAATTACAAAAGAGGGTGGCATAAGGTGTAACACCTCTTCTCACACGTAACACCAAAAAAAAAAAAAAAAGAGTTTCCATCCCGGAAGGCTTCTTCTTCAGTTGGAGTTTTTACCAAAACTGAGGGTGGCTCATAATGCCAACCAGAATGGTTTTTCTGTTTTTGAACCTAAAGGAGGCAAGGTTAAGTTTATCCATCCTCAAAAGGCTTATTTGTATGTATTAGCTCTTGCTCTTCTTCTTCAAGACTCTTTGTTCATGAAACTGAAAAGGGAGTATTTGGGATACAAAGTTTTTTCTTTAATGTTTCTTCTTCAACTATATTATTTTCTAATCATGCTTATACTTCTGTTTTGAGCTGTTTAATATATTCGACATGGTTTGGTATCTCTTAGCATCTTTATTTTTGGCTTAGAAAGTGATTTGGCAAGTTTTCTGGTTTTGCTTTCCGAACATCTCTTTTGCATTTTGTTTTGTTTATTTCTTGGTATCAGTATCTATGAGATTATATAGCTTTTGAAGTAATTATAAGTTGTATGGTGGATAATATTTGCTTTCACCATACAATGTTACTTGACTGACTGTTTTTTTTTTTCTAATTCTTCTTTTTGTGGTTCTATGAGAACATGTTTAGTTTTATTAGTCTTCTTCTCCAGATGGTGAAAAATTAGTTAAATGTAGAACAATTACTAGTTCATTGCTAAGTGCTTTTGGAACATATGTGCAAATAGAAACATTAGATGGACGCATAGTAATTGTTAATTGGAATCCATAAAAAAGTCATACAGTTTTAGTTCATGAAAATTTAGTGCAGATTCCAGACATATGTCTTGAGGATTTTCGTATAACTTTGACTGCATAGATGCTTGCTATGTCAAAATGTCTTTTTTTATCCTTCCTCTCTAATCTTTGGTGTTTGTTTGGTTCCCAAAATGTTCATTCCAGGACGACCACAATACTGGCAGCATAGTGGCTTTCAATCCATTGAAGGTATCCTCATGAGAATGTACTGCACCAATCAACTGCTACATTCTCTTTTTGTTGTAGCAACTCTTCTTTCGCTGTGCCGCGGTGATCTAAACTTAGACAGACAAGCCCTTCTTGACTTTGCTGCAGCAGTCCCACATGGCTGGAAGATCAACTGGGATCCCGCCACTCCTATCTGCTCATCTTGGGTAGGCGTTACTTGTAGTAATGATGAAGCCCATGTGGCGGAAGTACGACTTCCAGGAGTTGGACTCATTGGTTCACTTCCAAAAAATACTTTTGAGA</genome_strand>
        <mrna_strand>CTCACTCTTCACTTTGTACTTGGCACTAAACACTCCTCCTTCTTCTCCATTAACACAGATCCAAATCTCTTACTACTTCAGCTCAAGCTAAACGGGTCGGGTCGGGTCTTATTCTGCGCAAAATGTGGTTACTGCAACTCGATGAATTCGATTTGATGTTCATGTTTACTGTTAATTTCACCTCAGAACCTCAGTATTACTCCTAGAACTTCAAGTGCTTTCTCTATTTTATAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGACCACAATACTGGCAGCATAGTGGCTTTCAATCTGTTGAAGGTTTCCTCATGAGAATCTACCACACCAATCAACTGCTACATTCTCTTTTTGTTGTAGCAACTCTTCTTTCGCTGTGCCGTGGTGATCTAAACTCAGACAAACAAGCCCTTCTTGACTTTGCTGCAGCAGTCCCACATGGCTGGAAGATCAACTGGGATCCTGCCACTCCTATTTGCTCATCTTGGGTAGGCGTTACTTGTAGTAATGATGGAGCCCATGTGGTGGAAGTACGACTTCCAGGAGTTGGACTCATTGGTTCACTTCCAAAAAATACTTTTGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324899" ref_strand="+" ref_description="SGN-E324899 [cTOC-11-H20]">
      <seq>gcccacatgcattcaatgggtggtccaaaatttactcatggaaatataaagtcctcaaacgtgcgactcaagcaagatatggaagcttgcatctcagattttggtttagcccctataatgaacttccctgcagccccatcccgatatccagggtaccgggctcctgaggtgatagaaagccgaaagcatagtcataaatcagatgtctacagcttcggtgtgttactactcgagatgcttactggtaagcagccaatgcaatcaccggggcgtgatgacatggttgaccttcctaggtgggtccaatcagttgtcagggaggaatggacatcagaggtttttgacgtcgatttgatgagatttcaaaacattgaagaagagatggtacaaatgctgcaaattgctatggcatgtgttgtaaaggtcccagacatgcgacccaacatggaggaagttgttagaatgattgaagacgtcaggcaatctaactccgaaaacaggcattcttcagaaagagaatagatcctatgattcaaatgtgcatatcccttgattccttggatttctgacttacaatttgcaagtgcagagaagttcattcgatttcgattacccagtgcaacaacatacatgttttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="66832" stop="68071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67132" g_stop="67771" g_length="640"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E324899" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67132" e_stop="67771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCACATCCATTCAATGGGTGGTCCAAAATTTACTCATGGAAATATAAAGTCCTCAAACGTCCTACTCAAGCAAGATATGGAAGCTTGCATCTCAGATTTTGGTTTAGCCCCTATAATGAACTTCCCTGCAGCCCCATCCCGATATCCAGGGTACCGGGCTCCTGAGGTGATAGAAAGCCGAAAGCATAGTCATAAATCAGATGTCTACAGCTTCGGTGTGTTACTACTCGAGATGCTTACTGGTAAGCAGCCAATGCAATCACCGGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTCCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTT</genome_strand>
        <mrna_strand>GCCCACATGCATTCAATGGGTGGTCCAAAATTTACTCATGGAAATATAAAGTCCTCAAACGTGCGACTCAAGCAAGATATGGAAGCTTGCATCTCAGATTTTGGTTTAGCCCCTATAATGAACTTCCCTGCAGCCCCATCCCGATATCCAGGGTACCGGGCTCCTGAGGTGATAGAAAGCCGAAAGCATAGTCATAAATCAGATGTCTACAGCTTCGGTGTGTTACTACTCGAGATGCTTACTGGTAAGCAGCCAATGCAATCACCGGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTCCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689710" ref_strand="+" ref_description="SGN-E689710 [LH_Ea01J20]">
      <seq>catgtaccagggcgtgatgacatggttgaccttcctaggtgggttcaatcagttgtcagggaggaatggacatcagaggtttttgacgtcgatttgatgagatttcaaaacattgaagaagagatggtacaaatgctgcaaattgctatggcatgggttgtaaaggtcccagacatgcgacccaacatggaggaagtggttagaatgattgaagacgtcaggcaatctaactccgaaaacaggcattcttcagaaagagaatagatcctatgattcaaatgtgcatatcccttgattccttggatttctgacttacaatttgcaagtgctgagaagttcattcgatttcgattacccagtgcagcaacatacatgttttctttccctaaattttctgattcaatcctattgacaagtgtatctagtgaaagtgtggatttgttttccttaggagatatagtagacaagttaatcatcttcctttttcttttcgtttaagaactctagtcatttgttgtaagattcaatctgcactgcacttattcaacatctcatttatgcaacatgtcgaagcaattcaaaaaaaaaaacaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67095" stop="68265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67390" g_stop="67963" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="580" polyA_stop="596"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E689710" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67390" e_stop="67963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCACCGGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTCCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTTGTTTTCCTTAGGAGGTATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATT-AACATCTCATTTATGCAACATGTCGAAGCA</genome_strand>
        <mrna_strand>CATGTACCAGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTTCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGGGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTGGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCTGAGAAGTTCATTCGATTTCGATTACCCAGTGCAGCAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTTGTTTTCCTTAGGAGATATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATTCAACATCTCATTTATGCAACATGTCGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693550" ref_strand="+" ref_description="SGN-E693550 [LH_Ea01J20](-)">
      <seq>caccagggcgtgatgacatggttgaccttcctaggtgggttcaatcagttgtcagggaggaatggacatcagaggtttttgacgtcgatttgatgagatttcaaaacattgaagaagagatggtccaaatgctgcaaattgctatggcatgtgttgtaaaggtcccagacatgcgacccaccatggaggaagtggttagaatgattgaagacgtcaggcaatctaactccgaaaacaggcattcttcagaaagagaatagatcctatgattcaaatgtgcatatcccttgattccttggatttctgacttacaatttgcaagtgctgagaagttcattcgatttcgattacccagtgcaacaacatacatgttttctttccctaaattttctgattcaatcctattgacaagtgtatctagtgaaagtgtggattggttttccttaggagatatagtagacaagttaatcatcttcctttttcttttcgtttaagaactctagtcattaggggtaagattcaatttgccctgcacttattcagcctttaagggtgcaacatgtcgaagcaattcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67094" stop="68242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67394" g_stop="67963" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="575" polyA_stop="591"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E693550" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67394" e_stop="67963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTCCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTTGTTTTCCTTAGGAGGTATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATTAACATCTCATTTATGCAACATGTCGAAGCA</genome_strand>
        <mrna_strand>CACCAGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTTCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTCCAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCACCATGGAGGAAGTGGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCTGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTGGTTTTCCTTAGGAGATATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTAGGGGTAAGATTCAATTTGCCCTGCACTTATTCAGCCTTTAAGGGTGCAACATGTCGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E607456" ref_strand="+" ref_description="SGN-E607456 [23421]">
      <seq>gaggaatggacgtcagaggtttttgacgtcgatttgatgagatttcaaaacattgaagaagagatggtacaaatgctgcaaattgctatggcatgtgttgtaaaggtcccggacatgcgacccaacatggaggaagttgttagaatgattgaagacgtcaggcaatctaactccgaaaacaggcattcttcagaaagagaatagatcctatgattcaaatgtgcatattccttggatttctgacttgcaatttgtaagtcctgtgaaattcattcgattcgattacccagtgcaacaacatacatgttttctttccctaaattttctgattcaatcctattgacaagtgtatctaggaaagtgtggatttgttttccttaggagatatagtagacaagttaatcatcttcctttttcttttcgtttaagaactcttgtcatttgttgtaagattcaatctgcactgcacttattaaaaaaaaaaaaaaaaactcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="67150" stop="68237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67450" g_stop="67936" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="478" polyA_stop="492"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E607456" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E607456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67450" e_stop="67936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTTGTTTTCCTTAGGAGGTATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATTAAC</genome_strand>
        <mrna_strand>GAGGAATGGACGTCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCGGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGC--A-----T-ATTCCTTGGATTTCTGACTTGCAATTTGTAAGTCCTGTGAAATTCATTCGA-TTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAG-GAAAGTGTGGATTTGTTTTCCTTAGGAGATATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTTGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551068" ref_strand="+" ref_description="SGN-E551068 [TUS-55-B14]">
      <seq>cagattctttgcatttattttgagatttataaatgttatcaatatttattcagctataaaatggagtagatattttaaaagattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtccaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaangtcctgttgtccatttgctctttattgacagatcccaacccagacgacccacttgtaccagaaattgctcatatgtacaagactga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68207" stop="72909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68507" g_stop="68586" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68701" g_stop="68780" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="160" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="261" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="389" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="494" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72609" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="580" r_length="86" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E551068" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68507" e_stop="68586"/>
          <exon e_start="68701" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGA</genome_strand>
        <mrna_strand>CAGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA..................................................................................................................GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCCAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAN..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCCAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688856" ref_strand="+" ref_description="SGN-E688856 [t3_tus_55_B14]">
      <seq>cagattctttgcatttattttgagatttataaatgttatcaatatttattcagctataaaatggagtagatattttaaaagattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtccaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaangtcctgttgtccatttgctctttattgacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68207" stop="72855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68507" g_stop="68586" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68701" g_stop="68780" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="160" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="261" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="389" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="494" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72555" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="526" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E688856" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68507" e_stop="68586"/>
          <exon e_start="68701" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGA</genome_strand>
        <mrna_strand>CAGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA..................................................................................................................GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCCAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAN..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260086" ref_strand="+" ref_description="SGN-E260086 [cLEG-52-B18]">
      <seq>agattctttgcatttattttgagatttataaatgttatcaatatttattcagctataaaatggagtagatattttaaaagattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccnaatacgagaccactgctcgtagctggactcaaaatatgcgatgggataacggcattgtccntcggtgtgtctaagaactttcaattcaattacttcattttgctttcactcctagagcaatatcttcattgtgctttggatgaaagacaaaatgttgggtaagaaatcagtttaagtagactccgatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68208" stop="73113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68508" g_stop="68586" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68701" g_stop="68780" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="159" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="260" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="388" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="493" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72813" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="778" r_length="285" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E260086" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68508" e_stop="68586"/>
          <exon e_start="68701" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATG</genome_strand>
        <mrna_strand>AGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA..................................................................................................................GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCNAATACGAGACCACTGCTCGTAGCTGGACTC-AAAATATGCGATGGGATAACGGCATTGTCCNTCGGTGTGTCTAAGA-ACTTTCAA-TTCAATTACTTCATTTTGCTTTCACTCCTAGA-GCAATATCTTCATTGTGCTTTGGATGAAAG-ACAAAATGTTGGGTAAGAAATCAGTTTAAGTAGACTCCGATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704811" ref_strand="+" ref_description="SGN-E704811 [FA25BD01]">
      <seq>attttgagatttataaatgttatcaatatttattcagctataaaatggagtagatattttaaaagattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68223" stop="73209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68523" g_stop="68586" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68701" g_stop="68780" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="144" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="245" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="373" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="478" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72909" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="864" r_length="386" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E704811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68523" e_stop="68586"/>
          <exon e_start="68701" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCC</genome_strand>
        <mrna_strand>ATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA..................................................................................................................GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E700333" ref_strand="+" ref_description="SGN-E700333 [FA12DC10]">
      <seq>tataaatgttatcaatatttattcagctataaaatggagtagatattttaaaagattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaaccntgaatgaaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgaataaacagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68234" stop="73274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68534" g_stop="68586" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114">
            <donor d_prob="0.196" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68701" g_stop="68780" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="133" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="234" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="359" r_length="125" r_score="0.977"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="464" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72970" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="911" r_length="447" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="914" polyA_stop="930"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E700333" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E700333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68534" e_stop="68586"/>
          <exon e_start="68701" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACA</genome_strand>
        <mrna_strand>TATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA..................................................................................................................GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGC---AGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCNTGAATGAAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGAATAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709510" ref_strand="+" ref_description="SGN-E709510 [FA52BA10]">
      <seq>ccgatttattcagctataaaatggagtagatattttaaaaaggattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtccagacccgaaatctttcaatatgtgaatatctatttgttgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68250" stop="73169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68547" g_stop="68586" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68587" i_stop="68698" i_length="112">
            <donor d_prob="0.196" d_score="0.93"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68699" g_stop="68780" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="122" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="223" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="351" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="456" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72524" g_stop="72869" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="803" r_length="347" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E709510" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68547" e_stop="68586"/>
          <exon e_start="68699" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAAGTAAATACTTAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGA-CCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTT</genome_strand>
        <mrna_strand>CCGATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA................................................................................................................AGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCCAGACCCGAAATCTTTCAATATGTGAATATCTATTTGTTGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708598" ref_strand="+" ref_description="SGN-E708598 [FA36AG12]">
      <seq>catttatctcattctttttcttctttttttttttgttgaaatggactaaaaatgagtgtgtataaatgctaacaaagggaatattgttttctatttcttacataggattggctcaaaacctaatccaagctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattaaaaggtatacggactgaattatggcgtcaaagcgcatattgaaggagcttaaggatttgcaaaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacaaatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttaaaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaaaagcaatggagtccggctttgaccatatctaaggccctgttgtccatttgctctttattgacagatccaaacccaaacgacccacttgtaccaaaaattgctcatatgtacaaaactgacagggccaaatacaaaaccactgctcgtagctggactcaaaaatatgcaatgggataacggcattgtcctcgggtgtgtctaaaacactttcaatttcaattacttcattttgctttcactcctagatgcaaatatcttcattgtgctttggatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68300" stop="73066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68596" g_stop="68780" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="284" r_length="101" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="412" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="517" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72767" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="762" r_length="245" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E708598" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68596" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGC-AATATCTTCATTGTGCTTTGGATGAAAG</genome_strand>
        <mrna_strand>CATTTATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAAAGGGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAG--CTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAAAAGGTATACGGACTGAATTATGGCGTCAAAGCGCATATTGAAGGAGCTTAAGGATTTGCAAAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAAATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAAAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAAAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAAACGACCCACTTGTACCAAAAATTGCTCATATGTACAAAACTGACAGGGCCAAATACAAAACCACTGCTCGTAGCTGGACTCAAAAATATGCAATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAAACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAAATATCTTCATTGTGCTTTGGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E708850" ref_strand="+" ref_description="SGN-E708850 [FA36DG08]">
      <seq>catttatctcattctttttcttctttttttttttgttgaaatggactaaaaatgagtgtgtataaatgctaacaaagtgaatattgttttctatttcttacataggattggctcaaaacctaatccaagctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattaaaaggtatacggactgaattatggcgtcaaaccccatattgaaggagcttaaggatttgcaaaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacaaatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttaaaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaaaagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacaaatccaaacccaaacaacccacttgtaccaaaaattgctcatatgtacaaaactgacagggccaaatacaaaaccactgctcgtacctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaaaacactttcaatttcaattacttcattttgctttcactcctaaatgcaatatcttcattgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68300" stop="73058"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68596" g_stop="68780" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="284" r_length="101" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="412" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="517" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72758" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="752" r_length="235" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E708850" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E708850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68596" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTT</genome_strand>
        <mrna_strand>CATTTATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAAAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAG--CTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAAAAGGTATACGGACTGAATTATGGCGTCAAACCCCATATTGAAGGAGCTTAAGGATTTGCAAAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAAATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAAAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAAAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAAATCCAAACCCAAACAACCCACTTGTACCAAAAATTGCTCATATGTACAAAACTGACAGGGCCAAATACAAAACCACTGCTCGTACCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAAACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAAATGCAATATCTTCATTGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431279" ref_strand="+" ref_description="SGN-E431279 [STM-55-O17]">
      <seq>ctaaaaatgagtgtgttgtataaatggtaacagagtgaatgttgttttctatttcttccataggattggctcaaaacctaatccgagctctgcaaatctccattcaattgtcttccacatcttcctcctcttaattcaggtatacgggctgaattatggcatcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacnaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaaggttgtcaagaacgagatggttcaatatgtgaatatctatttgttgaattttgtgaggggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68346" stop="73179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68641" g_stop="68780" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="69007" i_length="227">
            <donor d_prob="0.898" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69008" g_stop="69093" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="225" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="353" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="458" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72880" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="817" r_length="359" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E431279" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68641" e_stop="68780"/>
          <exon e_start="69008" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAATGA--GTG-TGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAG</genome_strand>
        <mrna_strand>CTAAAAATGAGTGTGTTGTATAAATGGTAACAGAGTGAATGTTGTTTTCTATTTCTTCCATAGGATTGGCTCAAAACCTAATCCGAGCTCTGCAAATCTCCATTC----AATTGTCTTCCACATCTTCCTCCTCTTAATTCAG...................................................................................................................................................................................................................................GTATACGGGCTGAATTATGGCATCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACNAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGTTGTCAAGAACGAGATGGTTCAATATGTGAATATCTATTTGTTGAATTTT-GTGAGGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463805" ref_strand="+" ref_description="SGN-E463805 [cPRO-16-E9]">
      <seq>ctaaaaatgagtgtgttgtataaatggtaacagagtgaatgttgttttctatttcttccataggattggctcaaaacctaatccgagctctgcaaatctccattcaattgtcttccacatcttcctcctcttaattcaggtatacgggctgaattatggcatcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttgggtctcaatccatttccctcctgattatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68346" stop="70393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68641" g_stop="68780" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.879"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="69007" i_length="227">
            <donor d_prob="0.898" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69008" g_stop="69093" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="225" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70093" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="339" r_length="114" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E463805" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68641" e_stop="68780"/>
          <exon e_start="69008" e_stop="69093"/>
          <exon e_start="69981" e_stop="70093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAATGA--GTG-TGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTT-GGTCTCAATCCATTTCCCCCCTGATTATCCT</genome_strand>
        <mrna_strand>CTAAAAATGAGTGTGTTGTATAAATGGTAACAGAGTGAATGTTGTTTTCTATTTCTTCCATAGGATTGGCTCAAAACCTAATCCGAGCTCTGCAAATCTCCATTC----AATTGTCTTCCACATCTTCCTCCTCTTAATTCAG...................................................................................................................................................................................................................................GTATACGGGCTGAATTATGGCATCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGGTCTCAATCCATTTCCCTCCTGATTATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349465" ref_strand="+" ref_description="SGN-E349465 [cTOS-1-P16]">
      <seq>taaaaatgagtgtgtataaatgctaacagagtgaatattgttttctatttcttacataggattggctcaaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68342" stop="73061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68642" g_stop="68780" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="240" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="368" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="473" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72761" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="711" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E349465" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68642" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGA</genome_strand>
        <mrna_strand>TAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560259" ref_strand="+" ref_description="SGN-E560259 [19885]">
      <seq>ctcaaaacctaatccgagctctgcaaatctccattcgattgtcttccacatcttcctcctcttaattcaggacttggatttgaaggtatacgggctgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagagagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcggggtgtgtctgagacacttttaatttcaactacttcattttgctttcactcctaaatgcaatgtcttcattgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68439" stop="73055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68707" g_stop="68780" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="0.84"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="171" r_length="101" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="299" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="404" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72755" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="640" r_length="236" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E560259" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68707" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTC-GGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGC</genome_strand>
        <mrna_strand>CTCAAAACCTAATCCGAGCTCTGCAAATCTCCATTC----GATTGTCTTCCACATCTTCCTCCTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTTGAAGGTATACGGGCTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGAGAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGGTGTGTCTGAGACACTTTTAATTTCAACTACTTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341663" ref_strand="+" ref_description="SGN-E341663 [cTOE-23-H6]">
      <seq>tcaaaacctaattcaagctctgcaattttccattcaattaattgtcttccacatgggcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68408" stop="73049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68708" g_stop="68780" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="174" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="407" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72749" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="633" r_length="226" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E341663" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68708" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCA</genome_strand>
        <mrna_strand>TCAAAACCTAATTCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATGGGCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285415" ref_strand="+" ref_description="SGN-E285415 [cLER-20-L6]">
      <seq>caaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68409" stop="73065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68709" g_stop="68780" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="173" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="301" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="406" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72765" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="648" r_length="242" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E285415" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68709" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAA</genome_strand>
        <mrna_strand>CAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278911" ref_strand="+" ref_description="SGN-E278911 [cLER-2-M23]">
      <seq>caaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68409" stop="72915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68709" g_stop="68780" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="173" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="301" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="406" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72615" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="498" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E278911" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278911" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68709" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGC</genome_strand>
        <mrna_strand>CAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315287" ref_strand="+" ref_description="SGN-E315287 [cTOA-24-O8]">
      <seq>aaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatctttcatgtgctttggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68410" stop="73063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68710" g_stop="68780" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72763" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="645" r_length="240" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E315287" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68710" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATG</genome_strand>
        <mrna_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTTCATGTGCTTTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315214" ref_strand="+" ref_description="SGN-E315214 [cTOA-24-N8]">
      <seq>aaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68410" stop="73061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68710" g_stop="68780" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72761" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="643" r_length="238" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E315214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68710" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGA</genome_strand>
        <mrna_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279772" ref_strand="+" ref_description="SGN-E279772 [cLER-8-I19]">
      <seq>aaaacctaatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggttgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68410" stop="72856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68710" g_stop="68780" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="172" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72556" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="438" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E279772" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68710" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGAT</genome_strand>
        <mrna_strand>AAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGTTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579099" ref_strand="+" ref_description="SGN-E579099 [86224]">
      <seq>acctaatccgagctctgcaaatctccattcaattgtcttccacatcttcctcctcttaattcaggtatacgggctgaattatggcatcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaacctaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaagggttgtcaagaccgagatgtctcactatgtgaatatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68439" stop="73155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68713" g_stop="68780" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.882"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="69007" i_length="227">
            <donor d_prob="0.898" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69008" g_stop="69093" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="150" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="279" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="384" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72855" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="723" r_length="339" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E579099" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68713" e_stop="68780"/>
          <exon e_start="69008" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCC-AAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTC-AAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAA-TTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAAC-AAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAA-AGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCT</genome_strand>
        <mrna_strand>ACCTAATCCGAGCTCTGCAAATCTCCATTC----AATTGTCTTCCACATCTTCCTCCTCTTAATTCAG...................................................................................................................................................................................................................................GTATACGGGCTGAATTATGGCATCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACCTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGGTTGTCAAGACCGAGATGTCTCACTATGTGAATATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286298" ref_strand="+" ref_description="SGN-E286298 [cLES-11-N6]">
      <seq>taatccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68416" stop="72898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68716" g_stop="68780" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="166" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="294" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="399" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72598" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="474" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E286298" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286298" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68716" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATG</genome_strand>
        <mrna_strand>TAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318655" ref_strand="+" ref_description="SGN-E318655 [cTOB-9-A15]">
      <seq>ccaagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctggggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattgtgctatcactcctagatgcaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68420" stop="73045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68720" g_stop="68780" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="162" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="290" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="395" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72745" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="617" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E318655" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68720" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATC</genome_strand>
        <mrna_strand>CCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGGGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTGTGCTATCACTCCTAGATGCAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337247" ref_strand="+" ref_description="SGN-E337247 [cTOE-7-I16]">
      <seq>caagctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68421" stop="72862"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68721" g_stop="68780" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="161" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="289" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72562" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="433" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E337247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68721" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72562"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAAC</genome_strand>
        <mrna_strand>CAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288361" ref_strand="+" ref_description="SGN-E288361 [cLES-16-G21]">
      <seq>ctctgcaattttccattcaattaattgtcttccacatcttcctcttcttaattcaggacttggattagaaggtatacggactgaattatggcgtcgaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68425" stop="72990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68725" g_stop="68780" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="157" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="285" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="390" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72690" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="557" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E288361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68725" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCT</genome_strand>
        <mrna_strand>CTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279479" ref_strand="+" ref_description="SGN-E279479 [cLER-5-E23]">
      <seq>tcttccacatctttctcttcttaattcacgacttggattagaaggtatacggactgaattatggcgtctaagcgcatattgaaggagcttaaggatttgcagaaggatcctcccacctcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcatgaggtgtatttttggtctcaatacatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccataaattgctcatatgtacaagactgacagggccaaatacgaaaccactgctcgtagctggactcaaaaatttgcgatgggataacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68670" stop="72970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68752" g_stop="68780" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="130" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="258" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="363" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72669" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="509" r_length="146" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E279479" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68752" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCCACATCTTCCTCTTCTTAATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACG</genome_strand>
        <mrna_strand>TCTTCCACATCTTTCTCTTCTTAATTCAC....................................................................................................................................................................................................................GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCTAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCATGAGGTGTATTTTTGGTCTCAATACATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCATAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAAACCACTGCTCGTAGCTGGACTCAAAAATTTGCGATGGGATAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612327" ref_strand="-" ref_description="SGN-E612327 [62088]">
      <seq>aattcagacttggaattgaaggtatacggcctgaaattatggcatcgaagcgcatattgaaggagcttaaaggatttgcagaaggatcctccccacctcatgcagcgctggtccagtggctgaggatatgttcccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaaggttgtcaagaccgagatgtttcaatatgtgaatatctatttgttgaattttgtgaggggagaacctgaaatgtaattttactttgctccttcctaagtttcttgtatgggtgctatcttttgagtggcaaaaattccaatgattaaacagcaactattctctgtaaaaaaaaaaaaaaaaaaactcgagacctagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68689" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68774" g_stop="68780" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212">
            <donor d_prob="0.898" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68993" g_stop="69093" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="110" r_length="104" r_score="0.901"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="239" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="344" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72524" g_stop="72970" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="791" r_length="447" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="807" polyA_stop="826"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E612327" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612327" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="68774" e_stop="68780"/>
          <exon e_start="68993" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCAGGTATTTTTCTGCATATAACTGCAAAATGAAGAAGATCTAGATTTTTCCGCATGAACAATCCATTAGATCTCTTAGCCTTTCCTGTTTGAGTTATTATAAGCTTCAGTTTTGTAATTCTGTGACCTTAATTTGTGTGTGTAACTGTTTTCTACTTTACTTGAATATGGAGATCTGTGGAGTTTGATGAAGAAATTGTTATTATAATTGCTTAGGACTTGGATTAGAAGGTATACGGACTG-AATTATGGCGTCGAAGCGCATATTGAAGGAGCTT-AAGGATTTGCAGAAGGATCCTCCC-ACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTT-CCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACA</genome_strand>
        <mrna_strand>AATTCA-....................................................................................................................................................................................................................GACTTGGAATTGAAGGTATACGGCCTGAAATTATGGCATCGAAGCGCATATTGAAGGAGCTTAAAGGATTTGCAGAAGGATCCTCCCCACCTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGTTGTCAAGACCGAGATGTTTCAATATGTGAATATCTATTTGTTGAATTTT-GTGAGGGGAGAACCTGAAATGTAATTTTA-CTTTGCTCCTTCCT-AAGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCAAAAATTCCAATGATTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E600314" ref_strand="-" ref_description="SGN-E600314 [53322]">
      <seq>gatttgcagaaggatcctcccacgtcatgcagcgctggtccagtggctgaggatatgttccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaaggttgtcaagaccgagatgtttcaatatgtgaatatctatttgttgaattttgtgaggggagaacctgaaatgtaattttactttgctccttcctaagtttcttgtatgggtgctatcttttgagtggcaaaaattccaatgatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="68757" stop="73266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69057" g_stop="69093" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69981" g_stop="70108" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="165" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="270" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72524" g_stop="72966" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="713" r_length="443" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E600314" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E600314" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69057" e_stop="69093"/>
          <exon e_start="69981" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTGGTATATCGGCTGTACTTTTTATTTTTGCCTTACACTTCTGATTGCTGAGCTTATGTGCTAGTTTTGTTAGCTGTAGTCCAATAATTAGGTCAGTGTGGTTGAATTTCTGATGTTTTCTGCGGTTTCTGTTTTGCTAATGTTGCTAGTTTAGAACAAGTCTGATTTAGTAGTTTGCTGAACCAATTTTTTGCTTTCTGTACTGGCAGAGTTGCATGATTTAAATGTTTGTTTCTGTAAAAATTAGTGGCATTAGCCCCCGGTGGTAGCCTAGTTGTCCAAGAGCTGAGTTGGAGTAAGTATGTTAGCATCCAAGATTCAAATCTCAGTAAAGGTGAACTAGGTGAATCATTCCCATTTGCCTATGCTTTGGTGGAAAAGGTCATAAGATACATGTCCTAGTTGTAGGTAGCTGGTATAGTTGGTGTACTAAAAGTGTCTGTTAAAAGCTTGGACATTAATGTTATGGAAAAAACTTATTGGCATCATTAGTAGGTTGATCCGTTACGTGTTAACAGCAGCTGAATGCAGATTCGGCTCTCTTTTATTTTGTTTTTGCTTATAGATTTGTTATATGATATTGGTGTCCAACCAAGTTGTGCACAACCGAGGTTGTATTGCATCTTATACTGGTTTTTCTTTCTCACTTCTGAGATTTAGCGTTCAATATATGGCACTTGAAGATTGTAATGTTACTTATAATTGTCTATCAAGTTTCTGCATCATTCTTTGTTGTACTTCTCCTAATGCATATTTTGTCATTTTTCTGATGAGGAACTGTTTTTCCACTTAGATTTAGGTGCTGAGTGTGATTATACATTTGTTATAGTGAGTCTTTTAATCACATGGCTTTTATGTCGACATTAACTAGCATATTTTGTAAAATACAGGTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTA</genome_strand>
        <mrna_strand>GATTTGCAGAAGGATCCTCCCACGTCATGCAGCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGTTGTCAAGACCGAGATGTTTCAATATGTGAATATCTATTTGTTGAATTTT-GTGAGGGGAGAACCTGAAATGTAATTTTA-CTTTGCTCCTTCCT-AAGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCAAAAATTCCAATGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E431280" ref_strand="-" ref_description="SGN-E431280 [STM-55-O17]">
      <seq>tccattggcaagcaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaaggttgtcaagaccgagatgtttcaatatgtgaatatctatttgttgaattttgtgaggggagaacctgaaatgtaattttactttgctccttcctaagtttcttgtatgggtgctatcttttgagtggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69702" stop="73249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70002" g_stop="70108" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="212" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72524" g_stop="72950" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="639" r_length="427" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E431280" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431280" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70002" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCG</genome_strand>
        <mrna_strand>TCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGTTGTCAAGACCGAGATGTTTCAATATGTGAATATCTATTTGTTGAATTTT-GTGAGGGGAGAACCTGAAATGTAATTTTA-CTTTGCTCCTTCCT-AAGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295627" ref_strand="+" ref_description="SGN-E295627 [cLET-25-M5]">
      <seq>tccattggcaaccaacaatcatggggcctacagatagcccttatgcaggaggtgtatttttggtctcaatccatttcccccctgattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaagtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaagaaatcagtttaagtagactccgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69702" stop="73111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70002" g_stop="70108" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="212" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72524" g_stop="72811" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="500" r_length="288" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E295627" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70002" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCA</genome_strand>
        <mrna_strand>TCCATTGGCAACCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAAGAAATCAGTTTAAGTAGACTCCGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572700" ref_strand="+" ref_description="SGN-E572700 [31894]">
      <seq>cctacagagagcccttatgcaggaggtgtatttttggtctcaatccatttccctcctgattatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactacttcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttacgtagactccgatcatgtcaaggttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttgtgaggggagaacctgaaatgtaattttacttttgctccttcctaagtttcttgtatgggtgctatcttttgagtggcaaaaattccaatgattaaacagcaactattctctgtaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69728" stop="73295"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70028" g_stop="70108" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="186" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72524" g_stop="72997" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="660" r_length="474" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E572700" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70028" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATT</genome_strand>
        <mrna_strand>CCTACAGAGAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCTCCTGATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTACTTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTACGTAGACTCCGATCATGTCAAGGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTT-GTGAGGGGAGAACCTGAAATGTAATTTTACTTTTGCTCCTTCCT-AAGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCAAAAATTCCAATGATTAAACAGCAAC-TATTCTCTGTAAAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261829" ref_strand="-" ref_description="SGN-E261829 [cLEG-61-K18]">
      <seq>gattatcctttcaagcctccaaaggtggcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctctttaaaaaaaaaaaaaaaaaaaaaactcgagactagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69785" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="70108" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="129" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72524" g_stop="72986" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="592" r_length="463" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="615"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E261829" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261829" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72986"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTT</genome_strand>
        <mrna_strand>GATTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E573266" ref_strand="-" ref_description="SGN-E573266 [32549]">
      <seq>ttatcctttcaagcctccaaaggttgcatttagaactaaggttttccaccctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatctgctctctattgacagatccaaacccagatgatccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcaagattgtcctcgggtgtgtctgagacacttttaatttcaactaattcattttgctttcactcctaaatgcaatgtcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttacatagactccgatcatgtcaaggttgtcaagaccgagatgtttcaatatgtgattatctatttgttgaattttgtgaggggagaacctgaaatgtaattttactttgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69787" stop="73203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70087" g_stop="70108" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70981" g_stop="71085" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="127" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72524" g_stop="72908" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="513" r_length="386" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E573266" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E573266" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70087" e_stop="70108"/>
          <exon e_start="70981" e_stop="71085"/>
          <exon e_start="72524" e_stop="72908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCCTTTCAAGCCTCCAAAGGTATGCCTATGCTCTACAACATCCTTATCATTTTCTTCATTTCTTGAAATCAGCTGGAACTTTCATGAATGACACCCCACCTGTCTAGTTGTGTCCATATAGAATTGAATGATAGTAAAGTTCAAATTACTGCCTACTTCGCCATCATCTCTTGTTTTTATTTATAGTAGAATGTAAAGATCACATTGACATTCTTCCATCAGCGCTGATGAGACAGAATCGAACGAGAAGAAATCTAAGACTAGGCTGGTGATGTGCCACTGTGAGGAAGGGTCACAGGGTCACAGAGAGCGCTAGCATTAAAAATCCTGTCATTTGTTTGTCAGTGTGGTTTTCTTACCATATAGATAAGACCACGGAATTACATGGTGGAATACAATACACTCAAAATTGATAGATAGTTTCATATTCCTCTGGAAAATTTCAGGAAGCCTTGGATACTAGTTACTAACTGCCTGGAACTTCCTTATGATCATTCCCCACTACTTGAGATGATATTTGAAGTGTTTTGTTGAGAAGCTTATCTAGTCTCTGCTCTCTTATGTTCTGGTGCTAGAGTGAGCTGGTACTTCAGGGTGCTGTTCATGCTTATAAGTATGCTAGTTTTTACACCACAGTGTCCACATAACATGATGTAGAAGATGACTACATAATGTAGAAGATGGCTGGCGTTTGTTTGCTGCTAGATTAGTTTTACCTTCATGGTGGTTCTGTAGGTTCTAGGAATTTTGTTTGTTTCAGGCACTGTTTGAAATTTGCAGAATGAGTTCTCTCTGTCAATTCTGAGAACGTGTTCGATTAATAGTTTGACTGGTTTTGTGGTGATGAGTCAAGGGTCTGAATCTGATCTTTTAATTGTTTTTTTGTTTCAGGTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGC---ATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTC</genome_strand>
        <mrna_strand>TTATCCTTTCAAGCCTCCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCATTTAGAACTAAGGTTTTCCACCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATCTGCTCTCTATTGACAGATCCAAACCCAGATGATCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCAAGATTGTCCTCGGGTGTGTCTGAGACACTTTTAATTTCAACTAATTCATTTTGCTTTCACTCCTAAATGCAATGTCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTACATAGACTCCGATCATGTCAAGGTTGTCAAGACCGAGATGTTTCAATATGTGATTATCTATTTGTTGAATTTT-GTGAGGGGAGAACCTGAAATGTAATTTTA-CTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346601" ref_strand="+" ref_description="SGN-E346601 [cTOF-28-N23]">
      <seq>gcatttagaactaaggttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctctttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70684" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70984" g_stop="71085" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72524" g_stop="72996" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="575" r_length="473" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E346601" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70984" e_stop="71085"/>
          <exon e_start="72524" e_stop="72996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCAT</genome_strand>
        <mrna_strand>GCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320593" ref_strand="+" ref_description="SGN-E320593 [cTOB-22-N19]">
      <seq>ttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctacatgcaatatcttcattgtgctttggatgaaagaacaaaatgttgggaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70700" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71085" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72524" g_stop="72996" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="559" r_length="473" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E320593" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71085"/>
          <exon e_start="72524" e_stop="72996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCAT</genome_strand>
        <mrna_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTACATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGGAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320356" ref_strand="+" ref_description="SGN-E320356 [cTOB-22-M19]">
      <seq>ttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70700" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71085" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72524" g_stop="72996" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="559" r_length="473" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E320356" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71085"/>
          <exon e_start="72524" e_stop="72996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCAT</genome_strand>
        <mrna_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320361" ref_strand="+" ref_description="SGN-E320361 [cTOB-22-O19]">
      <seq>ttttccatcctaacatcaatagcaatggaagtatatgtttggatatccttaaagagcaatggagtccggctttgaccatatctaaggtcctgttgtccatttgctctttattgacagatccaaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctcttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70700" stop="73292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71000" g_stop="71085" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72524" g_stop="72996" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="559" r_length="473" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E320361" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71000" e_stop="71085"/>
          <exon e_start="72524" e_stop="72996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAGGTTTGTATCTTGGTCTTTGTTTGTGTCCCAATTAAATGTTGCTATGTTTTTTTCTGGTCTTAGATTTCTTGATGAATGTGAGTCCAAGCCAGAGTCTGGATTTAACAAAATAATGATGATGGTGGTGGTGTATGATTTGATTTGGTGGAGAATGCTAGACTTTTGTTATGTTTTGTTGTCCAGACTTGTTGAGTTTTGATCTCCTCTCTCTTCATAATTAAGGACTTTGAGGCATTGGAATCATGGCTCAGTAGGCCAAATAATCTGGCCTGGGAGTATACTTAGTTAAAAAAGCCTTATGTCAATATAAATGAATGTGAGAACTGTGATTGGCAAGTTATACTATGGCTTTACTAATGTGATAGTGCTCTGGAAATAGGATGATTTAGACCAGCATGTTTGTATTTGAAGAGAGAATGCGAGCAGTAATGCCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTTGTTGTACGCGTTTGTTGTATTGAGTTGCTGAGTTGAGGTTTGGGTGTTCAGATTTTTATTTAAATGAGAGATAATTTAGTGGTAATATTGAGCTGTTACTGCAGTAAAATCTTTTGAGCAATACCTGCCACTTTAGATTGCTCTTTTTGCTCCAGAAATGGTTTTCCTACAACTCTCATATAATCAACTAATTCGATTCTTCTATTTTATGTTCTTTTTTTTTCAATAAAAATTTATGTTAGTTGCTTTTCTTGATGTCCTCTTCTTAGCATGTTTCTATTTAACTATCCAAAATGTGATGAAAATCAGTTTATGTACCAAGTCACAACTAAATCTTCTGGAAAAAAGGCGAGGGAAGAGTGTCTCTGGTTTATATGTCTTATTTTTCAATTGTCATTTGGATTTTGTCTCACACTGCTATTTTATGTTTTAGGTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCAT</genome_strand>
        <mrna_strand>TTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268914" ref_strand="+" ref_description="SGN-E268914 [cLEM-4-P7]">
      <seq>ccaatcataaggaaggatagagtagaaaaggaaagaacagtgactaaacattatcatgacttgtttaaactaaaaacagtaactatatgacaacatacccagtataatcagactttacttctacctcagaggtagagaggttgttttgacctacgacgcaaggaaaagtagtccagaaaaaagtaacagaagtcaaaaagatatttattaataaacaaatatctatgcccttcaaaacatgcttaccttaaataacatatttgttctgtcagatgtcaagcagcaccttagcaagtatgattccatttttagaataaaagaaaggaaagtgaggggaagtatcatgttcatttctttattaaagaaagtcgagtgtgatatcttttgacatttaggctcctattataaaagtatttactatattattgtgtgatgtaatgactagtgcttctgacttgcttctgctaaatctttggtagaaattaggtgaactacttgtggcaattttgtctctttctgtcttcccttttccctctagttgatgttgaagcagatgatttattttctaactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71217" stop="72390"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71517" g_stop="72090" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E268914" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71517" e_stop="72090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTT</genome_strand>
        <mrna_strand>CCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTGACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTGTGATGTAATGACTAGTGCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354101" ref_strand="+" ref_description="SGN-E354101 [cTOS-16-J1]">
      <seq>aaacccagacgacccacttgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaacagcaactttttctctttatgagaccattttcctgtgaaaaaaaanaaannnaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72259" stop="73306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72559" g_stop="73005" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="459"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E354101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72559" e_stop="73005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</genome_strand>
        <mrna_strand>AAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353085" ref_strand="+" ref_description="SGN-E353085 [cTOS-14-B16]">
      <seq>tgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72277" stop="73274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72577" g_stop="72970" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="394" polyA_stop="403"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E353085" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72577" e_stop="72970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACA</genome_strand>
        <mrna_strand>TGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTC-AAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351234" ref_strand="+" ref_description="SGN-E351234 [cTOS-6-O22]">
      <seq>tgtaccagaaattgctcatatgtacaagactgacagggccaaatacgagaccactgctcgtagctggactcaaaaatatgcgatgggataacggcattgtcctcgggtgtgtctaagacactttcaatttcaattacttcattttgctttcactcctagatgcaatatcttcattgtgctttggatgaaagaacaaaatgttggtaaggaaatcagtttaagtagactccgatcatgtcaaagttgtcaagaccgagatctttcaatatgtgaatatctatttgttgaattttagtgaggggagaacctgaaatgtaattttatttttactccttcctgacgtttcttgtatgggtgctatcttttgagtggcgaaaattccagtgattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72277" stop="73274"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72577" g_stop="72970" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="404"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E351234" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72577" e_stop="72970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACA</genome_strand>
        <mrna_strand>TGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201457" ref_strand="+" ref_description="SGN-E201457 [cLEC-4-K19]">
      <seq>ggaatcggatccaaattggggccccaacctgttttgtctgcgtggtatatgtggcctttcagagctgtacattattgtcccatgcactatatatcttgagcggagtgttaaacccctgccttctctgtttatacttcctctcttttcttccctatttttggctttatacctctaattatattgttctaattatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74792" stop="75905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75092" g_stop="75605" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E201457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75092" e_stop="75605"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCGGATCCAAATTGGGGCCCCAACCTGTTTTGTCTGCGTGGTATATGTGGCCTTTCAGAGCTGTACATTATTGTCCCATGCACTATATATCTTGAGCGGAGTGTTAAACCCCTGCCTTCTCTGTTTATACTTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGT</genome_strand>
        <mrna_strand>GGAATCGGATCCAAATTGGGGCCCCAACCTGTTTTGTCTGCGTGGTATATGTGGCCTTTCAGAGCTGTACATTATTGTCCCATGCACTATATATCTTGAGCGGAGTGTTAAACCCCTGCCTTCTCTGTTTATACTTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378736" ref_strand="+" ref_description="SGN-E378736 [TUS-46-A1]">
      <seq>cattattgtcccatgcactatatatcttgagcggagtgttaaacccctgccttctctgtttatacttcctctcttttcttccctatttttggctttatacctctaattatattgttctaattatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74861" stop="75754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75161" g_stop="75454" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E378736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75161" e_stop="75454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTATTGTCCCATGCACTATATATCTTGAGCGGAGTGTTAAACCCCTGCCTTCTCTGTTTATACTTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCT</genome_strand>
        <mrna_strand>CATTATTGTCCCATGCACTATATATCTTGAGCGGAGTGTTAAACCCCTGCCTTCTCTGTTTATACTTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722122" ref_strand="+" ref_description="SGN-E722122 [FC16BB06]">
      <seq>aatcggccgaattggccttctctgttacccttcatctcttttcttccctatttttggctttatacctctaattatattgttctaattatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgattttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcaaagttacaaagagttgtgaggattatacttacagatgccgatgctacaaattcttccaatgatgaaggccggaatactgtacggaaagtgaaaaggcacgtgacggaaatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaaaatcggtgtctccggattctgacgtcactcgtcggaaaaagtttaaaggcgttcgtcaaaaaccgtggggtcgttgggctgcaaaaattcgggacccgaccgggggaaaacgggtgtggttgggtacttatgacacccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74909" stop="76248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75226" g_stop="75948" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="754" r_length="724" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E722122" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75226" e_stop="75948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGA-TTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCA</genome_strand>
        <mrna_strand>TTCATCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAAAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAAATTCTTCCAATGATGAAGGCCGGAATACTGTACGGAAAGTGAAAAGGCACGTGACGGAAATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAAATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAAAGGCGTTCGTCAAAAACCGTGGGGTCGTTGGGCTGCAAAAATTCGGGACCCGACCGGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266495" ref_strand="+" ref_description="SGN-E266495 [cLEI-5-O19]">
      <seq>gctatttttggctttatacctctgagtatattgttcgggttatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgggctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttttgagcataacgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74943" stop="75944"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75242" g_stop="75644" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E266495" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75242" e_stop="75644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAA</genome_strand>
        <mrna_strand>GCTATTTTTGGCTTTATACCTCTGAGTATATTGTTCGGGTTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGGGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTTTGAGCATAACGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266325" ref_strand="+" ref_description="SGN-E266325 [cLEI-3-A5]">
      <seq>tatttttggctttatacctctaattatattgttctaattatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaggccggaatactgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74944" stop="76035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75244" g_stop="75735" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E266325" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75244" e_stop="75735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTA</genome_strand>
        <mrna_strand>TATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E744915" ref_strand="+" ref_description="SGN-E744915 [GI|2213784]">
      <seq>tttggctttatacctctaattatattgttctaattatatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaggccggaatactgtacggagagtgaagaggcacgtgacggagatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaagaccgtggggtcgttgggctgcagagattcgggacccgacccggggaaaacgggtgtggttgggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgccgacggtggagataaaagcgaaaacgatgtcgctttgtcacccacctcagttctctgtgacaatgattttgcgccgtttgacaatctagggttctgcgaagtggatgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgatgaattcggcgaatttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtccatttttgcaaatgggttcactggttagttgactagtgacgtggcatttttggcgggaatatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtgggtgaatattgtaatatgaaaaattttgtatggtgaaattgaattaattaacgatgaagataaggagagtgaagggggatgtgtgtattttatgattgaggtgtgtttttgtgattctgaaaaaataatttattattttacgttggaaatataaagtcaaaattctattgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74948" stop="76947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75248" g_stop="76654" g_length="1407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1405" r_length="1405" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E744915" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1407</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E744915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75248" e_stop="76654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTATGATTGAGGTGTGTTTTTGTGATTCTGAAAAAAATAATTTATTATTTTTACGTTGGAAATATAAAGTCAAAATTCTATTGAAAATATAAATTTTATT</genome_strand>
        <mrna_strand>TTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTATGATTGAGGTGTGTTTTTGTGATTCTG-AAAAAATAATTTATTA-TTTTACGTTGGAAATATAAAGTCAAAATTCTATTGAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344131" ref_strand="+" ref_description="SGN-E344131 [cTOF-16-C4]">
      <seq>tatggtagaaagatctacttcccgccaaaaacaacaaagaaagtaatctctttttctttgttcactcatcaacttgtttctcaaatcatttgtatcactgcaactttttccacacttaaaaactttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaggccggaatactgtacggagagtgaagaggcacgtgacggagatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaagaccgtgggagtcgttgggctgcagagattcgggacccgacccggngaaaacgggtgtggttgggtacttatgacaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74984" stop="76246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75284" g_stop="75946" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E344131" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75284" e_stop="75946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGG-GTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCC</genome_strand>
        <mrna_strand>TATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGAGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGNGAAAACGGGTGTGGTTGGGTACTTATGACACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732209" ref_strand="+" ref_description="SGN-E732209 [LB01CC06]">
      <seq>gatctacttcccgccaaaaacaacaaagaaaattcttccgatgatgaaggccggaatactgtacggagagtgaagaggcacgtgacggagatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaagaccgtggggtcgttgggctgcagagattcgggacccgaccgggggaaaacgggtgtggttgggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgccgacggtggagataaaagcgaaaacgatgtcgctttgtcacccacctcagttctctgtgacaatgattttgcgccgtttgacaatctagggttctgcgaagtggatgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgatgaattcggcgaatttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtccatttttgcaaatgggttcactggttagttgactagtgacgtggcatttttggcgggaatatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtgggtgaatattgtaaatatgaaaattttgtatggtgaaattgaattaattaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74995" stop="76820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75295" g_stop="75325" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75326" i_stop="75703" i_length="378">
            <donor d_prob="0.966" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75704" g_stop="76520" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="848" r_length="817" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E732209" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75295" e_stop="75325"/>
          <exon e_start="75704" e_stop="76520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGT-AATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGAT</genome_strand>
        <mrna_strand>GATCTACTTCCCGCCAAAAACAACAAAGAAA..........................................................................................................................................................................................................................................................................................................................................................................................ATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCGGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAAATATG-AAAATTTTGTATGGTGAAATTGAATTAATTAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396363" ref_strand="+" ref_description="SGN-E396363 [TUS-47-F22]">
      <seq>tttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaagccggaatactgtacggatagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75107" stop="76045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75407" g_stop="75745" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E396363" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75407" e_stop="75745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGA</genome_strand>
        <mrna_strand>TTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAAGCCGGAATACTGTACGGATAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372063" ref_strand="+" ref_description="SGN-E372063 [TUS-30-H8]">
      <seq>ttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaggccggaatactgtacggagagtgaagaggcacgtgacggagatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaagaccgtggggtcgttgggctgcagagattcgggacccgacccggggaaaacgggtgtggttgggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaatttttcggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75108" stop="76380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75408" g_stop="76080" g_length="673"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E372063" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75408" e_stop="76080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCC</genome_strand>
        <mrna_strand>TTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTTCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285601" ref_strand="+" ref_description="SGN-E285601 [cLES-5-C20]">
      <seq>ttttatacaataatattggtcactattcactcacttcaaccagttcttgattgttttagtactcctttttgagcttatgatgatttttttttgtgctctttgaaaaaaatatcttttaaatcgaactgtaactttaagtttttggtataccatgacggaaaattcagttccggtgattaaattcactcaacacatagtaactacaaacaagcatgttttttctgagcataacgaaaaatccaattcagagttacaaagagttgtgaggattatacttacagatgccgatgctacagattcttccgatgatgaaggccggaatactgtacggagagtgaagaggcacgtgacggagatcaaccttatgccgtcaaccaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75108" stop="76169"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75408" g_stop="75869" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="462" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E285601" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75408" e_stop="75869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAG</genome_strand>
        <mrna_strand>TTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372062" ref_strand="+" ref_description="SGN-E372062 [TUS-30-H8](-)">
      <seq>accaaatcgatcggcgacagaaaacgaagatcggtgtctccggattctgacgtcactcgtcggaaaaagtttagaggcgttcgtcaaagaccgtggggtcgttgggctgcagagattcgggacccgacccggggaaaacgggtgtggttgggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgccgacggtggagataaaagcgaaaacgatgtcgctttgtcacccacctcagttctctgtgacaatgattttgcgccgtttgacaatctagggttctgcgaagtggatgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgatgaattcggcgaatttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtccatttttgcaaatgggttcactggttagttgactagtgacgtggcatttttggcgggaatatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtgggtgaatattgtaatatgaaaaattttgtatggtgaaattgaattaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75481" stop="76823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75781" g_stop="76524" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E372062" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E372062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75781" e_stop="76524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAG</genome_strand>
        <mrna_strand>ACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606694" ref_strand="+" ref_description="SGN-E606694 [22643]">
      <seq>ccggattctgacgtcactcgtcggaaaaagtttagaggcgtccgtcaaaggccgtggggtcgttgggcagcagagattcgggacccgacccgtggaaaacgggtgtggttgggaacttatgataccccagaagaagcagcaatcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtaacggtaaccgaaacggagtctgttgccgacggtggagataaaagcgaaaacgacgtcgctttgtcacccacctcagtcctctgtaacgatgattttgcgccgtttgataatctagggttctgcgaagtggacgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgaagaattcggcgagtttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtctatttttgcaaatgggttcacactggttagttgactggtgacgtggtatttttggcgggaatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttggtataatttttctgttaattgtgggtgaacattgtaatatgaaaaatttgtatggtgaaattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75520" stop="76807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75820" g_stop="76508" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="680" r_length="680" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E606694" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.013" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75820" e_stop="76508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTT--CACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAA</genome_strand>
        <mrna_strand>CCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTCCGTCAAAGGCCGTGGGGTCGTTGGGCAGCAGAGATTCGGGACCCGACCCGTGGAAAACGGGTGTGGTTGGGAACTTATGATACCCCAGAAGAAGCAGCAATCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGT-A-----ACGGTAACCGAAACGGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGACGTCGCTTTGTCACCCACCTCAGTCCTCTGTAACGATGATTTTGCGCCGTTTGATAATCTAGGGTTCTGCGAAGTGGACGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGAAGAATTCGGCGAGTTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCTATTTTTGCAAATGGGTTCACACTGGTTAGTTGACTGGTGACGTGGTATTTTTGGCGGG-A-ATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGA--TTTGGTATAATTTTTCTGTTAATTGTGGGTGAACATTGTAATATGAAAAA-TTTGTATGGTGAAATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606753" ref_strand="+" ref_description="SGN-E606753 [22704]">
      <seq>ccggatctgacgtcactcgtcggaaaaacgtttagaggtgttcgtcaaaggccgtggggtcgttgggcagcagagattcgggacccgacccgtggaaaacgggtgtggttgggaacttatgataccccagaagaagcagcaatcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaatggcggaggtaacggtaacggtaaccgaaacggagtctgttgccgacggtggagataaaagcgaaaacgacgtcgctttgtcacccacctcagtcctctgtaacgatgattttgcgccgtttgataatctagggttctgcgaagtggacgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgaagaattcggcgagtttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtctatttttgcaaatgggttcacactggttagttgactggtgacgtggtatttttggcgggaatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtgtcatttttctgttaattgtgggtgaacatggtaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75520" stop="76783"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75820" g_stop="76483" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E606753" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75820" e_stop="76483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGATTCTGACGTCACTCGTCGGAAAAA-GTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTT--CACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATG</genome_strand>
        <mrna_strand>CCGGA-TCTGACGTCACTCGTCGGAAAAACGTTTAGAGGTGTTCGTCAAAGGCCGTGGGGTCGTTGGGCAGCAGAGATTCGGGACCCGACCCGTGGAAAACGGGTGTGGTTGGGAACTTATGATACCCCAGAAGAAGCAGCAATCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAATGGCGGAGGTAACGGT-A-----ACGGTAACCGAAACGGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGACGTCGCTTTGTCACCCACCTCAGTCCTCTGTAACGATGATTTTGCGCCGTTTGATAATCTAGGGTTCTGCGAAGTGGACGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGAAGAATTCGGCGAGTTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCTATTTTTGCAAATGGGTTCACACTGGTTAGTTGACTGGTGACGTGGTATTTTTGGCGGG-A-ATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTG-TGTCATTTTTCTGTTAATTGTGGGTGAACATGGTAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608120" ref_strand="+" ref_description="SGN-E608120 [24100]">
      <seq>ttcatcgttaattaactcgatttcaccgtacaaaattcttcatattacaatgttcaccacaattaacagaaaaataaaaacaaaaatctctcacaaagtcttcgtatgaatagagactgctaatcactatatatattcccgccaaaaataccacgtcaccagtcaactaaccagtgtgaacccatttgcaaaaatagatgaaatagcccctcgtacactatcgagcttcaagggcaaaatcgtcaaagtcaaactcgccgaattcttcgccgtagtatttctccgtcatagcaaaatccggcagccggaaaagtgaatcaacgtcgaaaccaaaagcgtccacttcgcagaaccctagattatcaaacggcgcaaaatcatcgttacagaggactgaggtgggtgacaaagcgacgtcgttttcgcttttatctccaccgtcggcaacagactccgtttcagtttccgttaccgttaccgttacctccgncgttgttgataccggaaaattggtaacggcgtcaggacctttgagcttaactgcagctttatcgtaaacgattgctgcttcttctggggtatcataagttcccaaccacacccgttttccacgggtcgggtcccgaatctctgctggccaaaggaccccacgggccttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76823" stop="75564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76523" g_stop="75863" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E608120" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76523" e_stop="75863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGTTAATTAATTCAATTTCACCATACAAAATTTTTCATATTACAATATTCACCCACAATTAACAGAAAAATAAAAACAAAAATCTCTCACAAAGTCTTCGTATGAATAGAGACTGCTAATCACTATATATATATTCCCGCCAAAAATGCCACGTCACTAGTCAACTAACCA--GTGAACCCATTTGCAAAAATGGACGAAATAGCCCCTCGTACACTATCGAGCTTCAAGGGCAAAATCGTCAAAGTCAAATTCGCCGAATTCATCGCCGTAGTATTTCTCCGTCATAGCAAAATCCGGCAGCCGGAAAAGTGAATCAACGTCGAAACCAAAAGCATCCACTTCGCAGAACCCTAGATTGTCAAACGGCGCAAAATCATTGTCACAGAGAACTGAGGTGGGTGACAAAGCGACATCGTTTTCGCTTTTATCTCCACCGTCGGCAACAGACTCGGTTTCGGTTTCCGTAACCGTCACCGTTACCTCCGCCGTTGTTGATACCGGAAAATTGGTAACGGCGTCAGGACCTTTGAGCTTAACTGCAGCTTTATCGTAAACGACAGCTGCTTCTTCTGGGGTGTCATAAGTACCCAACCACACCCGTTTTCCCCGGGTCGGGTCCCGAATCTCTGC-AGCCCAACGACCCCACGGTCTTTGAC</genome_strand>
        <mrna_strand>TTCATCGTTAATTAACTCGATTTCACCGTACAAAATTCTTCATATTACAATGTTCA-CCACAATTAACAGAAAAATAAAAACAAAAATCTCTCACAAAGTCTTCGTATGAATAGAGACTGCTAATCAC--TATATATATTCCCGCCAAAAATACCACGTCACCAGTCAACTAACCAGTGTGAACCCATTTGCAAAAATAGATGAAATAGCCCCTCGTACACTATCGAGCTTCAAGGGCAAAATCGTCAAAGTCAAACTCGCCGAATTCTTCGCCGTAGTATTTCTCCGTCATAGCAAAATCCGGCAGCCGGAAAAGTGAATCAACGTCGAAACCAAAAGCGTCCACTTCGCAGAACCCTAGATTATCAAACGGCGCAAAATCATCGTTACAGAGGACTGAGGTGGGTGACAAAGCGACGTCGTTTTCGCTTTTATCTCCACCGTCGGCAACAGACTCCGTTTCAGTTTCCGTTACCGTTACCGTTACCTCCGNCGTTGTTGATACCGGAAAATTGGTAACGGCGTCAGGACCTTTGAGCTTAACTGCAGCTTTATCGTAAACGATTGCTGCTTCTTCTGGGGTATCATAAGTTCCCAACCACACCCGTTTTCCACGGGTCGGGTCCCGAATCTCTGCTGGCCAAAGGACCCCACGGGCCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350284" ref_strand="+" ref_description="SGN-E350284 [cTOS-4-H16]">
      <seq>gaaaacgggtgtggttgggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgccgacggtggagataaaagcgaaaacgatgtcgctttgtcacccacctcagttctctgtgacaatgattttgcgccgtttgacaatctagggttctgcgaagtggatgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgatgaattcggcgaatttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtccatttttgcaaatgggttcactggttagttgactagtgacgtggcatttttggcgggaatatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtgggtgaatattgtaatatgaaaaattttgtatggtgaaattgaattaattaacgatgaagataaggagagtgaagggggatgtgtgtatttttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75614" stop="76860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75914" g_stop="76556" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E350284" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350284" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75914" e_stop="76556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTT</genome_strand>
        <mrna_strand>GAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391338" ref_strand="+" ref_description="SGN-E391338 [TUS-47-F22](-)">
      <seq>ggtacttatgacaccccagaagaagcagctgtcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtgacggttacggaaaccgaaaccgagtctgttgccgacggtggagataaaagcgaaaacgatgtcgctttgtcacccacctcagttctctgtgacaatgattttgcgccgtttgacaatctagggttctgcgaagtggatgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgatgaattcggcgaatttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcgtccatttttgcaaatgggttcactggttagttgactagtgacgtggcatttttggcgggaatatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtgggtgaatattgtaatatgaaaaattttgtatggtgaaattgaattaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75631" stop="76825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75931" g_stop="76525" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E391338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75931" e_stop="76525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGA</genome_strand>
        <mrna_strand>GGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E434456" ref_strand="-" ref_description="SGN-E434456 [STM-59-P14]">
      <seq>cccagaagaagcagcaatcgtttacgataaagctgcagttaagctcaaaggtcctgacgccgttaccaattttccggtatcaacaacggcggaggtaacggtaacggtaacggaaactgaaacggagtctgttgccgacggtggagataaaagcgaaaacgacgtcgctttgtcacccacctcagtcctctgtaacgatgattttgcgccgtttgataatctagggttctgcgaagtggacgcttttggtttcgacgttgattcacttttccggctgccggattttgctatgacggagaaatactacggcgaagaattcggcgagtttgactttgacgattttgcccttgaagctcgatagtgtacgaggggctatttcatctatttttgcaaatgggttcacactggttagttgactggtgacgtggtatttttggcgggaatatatatagtgattagcagtctctattcatacgaagactttgtgagagatttttgtttttatttttctgttaattgtggtgaacattgtaatatgaaaaattttgtacggtgaaatcgagttaattaacgatgaagataaggagagtgaagggggatgtgtgtattttactgtcgaggtgtgttttataattctggaaaaaaataagttattatttttatgttggaattgtaaaatcgagactattggaaatatcaattttattcgtaaaaacaaaagaaaaattctatattatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75645" stop="76874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75945" g_stop="76668" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="740" polyA_stop="749"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E434456" ref_strand="-">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E434456" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="75945" e_stop="76668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTT--CACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTATGATTGAGGTGTGTTTTTGTGATTCT-GAAAAAAATAATTTATTATTTTTACGTTGGAAATATAAAGTCAAAATTCTATTGAAAATATAAATTTTATTTGTAAAGAAAAAAA</genome_strand>
        <mrna_strand>CCCAGAAGAAGCAGCAATCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTAACGGTAACGGAAACTGAAACGGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGACGTCGCTTTGTCACCCACCTCAGTCCTCTGTAACGATGATTTTGCGCCGTTTGATAATCTAGGGTTCTGCGAAGTGGACGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGAAGAATTCGGCGAGTTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCATCTATTTTTGCAAATGGGTTCACACTGGTTAGTTGACTGGTGACGTGGTATTTTTGGCGGG-A-ATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGT-GGTGAACATTGTAATATGAAAAATTTTGTACGGTGAAATCGAGTTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTACTGTCGAGGTGTG-TTTTATAATTCTGGAAAAAAATAAGTTATTATTTTTATGTTGGAATTGTAAAATCGAGA--CTATTGGAAATATCAATTTTATTCGTAAA-AACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483764" ref_strand="+" ref_description="SGN-E483764 [cSTE-10-H16]">
      <seq>ctgattcaaagctttctcctcctccttctttctttataaaccaaaaaaaaaaaaaaaaagttttctcttttgcttgtctcttcacccatttgatttcttcccttttctgttgctgcccaaaaaaattgtttacagacccttttgttgaactcaagttcatgtctaatctgtataatcacaacttgaatttctcacctgcaagagctgtttctcctcatataagaaccaaccaagatgttgatagtcagtacttgacagagctgttagcaaaaaggcacaaacttggaccctttacacaagttcttccaatctgcagccgactcttgattcaagaaatacttagactttccggaatgattcccaatcaagtactcactgactatgacagactacaacgtggaagccctaatcctgtgggttcaattgacatgatgcaacatgttggaggaaaaggtttatgtggctggaacgggaatggatggaacgcctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84580" stop="86430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84880" g_stop="85119" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85120" i_stop="85252" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85253" g_stop="85341" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="333" r_length="89" r_score="0.955"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85342" i_stop="85971" i_length="630">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="0.927" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85972" g_stop="86130" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="492" r_length="159" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E483764" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84880" e_stop="85119"/>
          <exon e_start="85253" e_stop="85341"/>
          <exon e_start="85972" e_stop="86130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTCAAAGCTTTCTCCTCCTCCTCCTTTCTTTATAAACC---AAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACTCGTTTGATTTCTTCCCTTTCCTGTTGCTGTCC-AAAAAATTGTTTACAGACCCTTTTGCTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTCTCTCCTCATATAAGAACCAACCAAGATGTTGATAGGTAAGGGATAAAAATCCTTTTTTCTTTCCTCTTGAATTTGTGGGGTTTGAAATTTGATAGCTTTTGTGCAAGATTGATGCTTTAACAAGTTTTGTTGTTTTTGTTTTTGGGTGTTTCTTGAAATTTTTTGTAGTCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAGCTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAGGTTGGATTAAATCTTGAATTTTTATTTGCTGCTGTTAGAATATCTATGAGTTGTTTGTGCATTTCTCTGATAAACTTTTTGTATGCTCTGTTTTTTTTTTTTAATCTATAAACTAATCCTCTGCTGTTGTTTTGAGAAAGTTGTAGCTGTTGGTGCAAGTTGATCAAATCTACTGGTTTGCTGTATGTTTTTAGCTGAACAGATTTTAGTAGTAAAGACTGGATTGAAATGAGATTTTGATAAGTTTCAGAACAAGCGATATGTGTTGTTTAGATTTTGTTTGTTTAAACAGTATTCTTGCAGGAATAGATTACCAGGATCAAGTATTGGCTGTTAGGTGATGTTAAGGTTAGCATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTC</genome_strand>
        <mrna_strand>CTGATTCAAAGCTTTCTCCTCCTCCTTCTTTCTTTATAAACCAAAAAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACCCATTTGATTTCTTCCCTTTTCTGTTGCTGCCCAAAAAAATTGTTTACAGACCCTTTTGTTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTTTCTCCTCATATAAGAACCAACCAAGATGTTGATAG.....................................................................................................................................TCAGTACTTGACAGAGCTGTTAGCAAAAAGGCACAAACTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGATTCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACTTAGACTTTCCGGAATGATTCCCAATCAAGTACTCACTGACTATGACAGACTACAACGTGGAAGCCCTAATCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTATGTGGCTGGAACGGGAATGGATGGAACGCCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477738" ref_strand="+" ref_description="SGN-E477738 [cSTD-1-J7]">
      <seq>ctttctcctcctccttctttctttataaaccaaaaaaaaaaaaaaaaagttttctcttttgcttgtctcttcacccatttgatttcttcccttttctgttgctgcccaaaaaattgtttacagacccttttgttgaactcaagttcatgtctaatctgtataatcacaacttgaatttctcacctgcaagagctgtttctcctcatataagaaccaaccaagatgttgatagtcagtacttgacagagctgttagcagaaaggcagaaacttggaccctttacacaagttcttccaatctgcagccgactcttgaatcaagaaatacttagactttccggaatgattcccaatcaagtactcagtgactatgacagactacaacgtggaagccctagtcctgtgggttcaattgacatgatgcaacatgttggaggaaaaggtttaggtggctggaacgggaatggatggaacgcctttcaagagcaaagattaggtggaccacagggaaggcccatcgactggcaagcttcaccaggagtccaagttcatttgttgtgaacggggtgttgcgtttggatatacctgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84591" stop="87579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84891" g_stop="85119" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="232" r_length="232" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85120" i_stop="85252" i_length="133">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85253" g_stop="85341" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="321" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85342" i_stop="85971" i_length="630">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85972" g_stop="86135" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="485" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86136" i_stop="87175" i_length="1040">
            <donor d_prob="0.965" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87176" g_stop="87279" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="588" r_length="103" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E477738" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84891" e_stop="85119"/>
          <exon e_start="85253" e_stop="85341"/>
          <exon e_start="85972" e_stop="86135"/>
          <exon e_start="87176" e_stop="87279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCCTCCTCCTCCTTTCTTTATAAACCAAAAAA---AAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACTCGTTTGATTTCTTCCCTTTCCTGTTGCTGTCCAAAAAATTGTTTACAGACCCTTTTGCTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTCTCTCCTCATATAAGAACCAACCAAGATGTTGATAGGTAAGGGATAAAAATCCTTTTTTCTTTCCTCTTGAATTTGTGGGGTTTGAAATTTGATAGCTTTTGTGCAAGATTGATGCTTTAACAAGTTTTGTTGTTTTTGTTTTTGGGTGTTTCTTGAAATTTTTTGTAGTCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAGCTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAGGTTGGATTAAATCTTGAATTTTTATTTGCTGCTGTTAGAATATCTATGAGTTGTTTGTGCATTTCTCTGATAAACTTTTTGTATGCTCTGTTTTTTTTTTTTAATCTATAAACTAATCCTCTGCTGTTGTTTTGAGAAAGTTGTAGCTGTTGGTGCAAGTTGATCAAATCTACTGGTTTGCTGTATGTTTTTAGCTGAACAGATTTTAGTAGTAAAGACTGGATTGAAATGAGATTTTGATAAGTTTCAGAACAAGCGATATGTGTTGTTTAGATTTTGTTTGTTTAAACAGTATTCTTGCAGGAATAGATTACCAGGATCAAGTATTGGCTGTTAGGTGATGTTAAGGTTAGCATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAGGTCAGCTTATGCTTATCTCATCTTTAGGCACAATATTTAAATTCTCTTTCCACTAATTATGTATTGCTCCTTATTAGATATCTTATGTGTCTGCCAATAGGGGCTAGCTCATGGTTTCTATGCTTATTGAAACACAAACATTGTGTATGGTAATCGTAGTAAGTTAACATGGAGTGGAGACTTAAGGAGAGCAGAATAGCATTTATACAAAGATCGTCTGAGCCATTACTGTTATGGACTTATGGTGAATTCGTCTTCAGTATCACATTGACTAATAAGACTGACTGTGTCTTCTCCTTGTATAGAAATGAGAAATTAATTCAGTTCTTGAAAAGCACCCCCAAACGAAGAAGTAGGAGTTAGCTTCAGTCTAAATTTTGTGGCAAGTCTAGACTTCGTAGGATAACAACTACTCATCAAGTGCCTTAGAAACTTACTATTCATTGGAAGAATATAGGACAAACAACTTTCAAAGAATATGAAATGAGATAGTGCTAAATGCCAATGCCAGATAGTGCCAAAATTTTGGCACTTCCAATGCTGAAGCTCCGAGACTCTTCAAAGGAAAAGGATGAACTAAAGAATTGAAGCAAAATCATTAAATGGAGGAAGAAGATGAAACGCGGAGAAAAACAGCTAGATGTTCCTCTTTCTGCTTGAGTTAGAAATTTAAACACATCATGCATTGTTTCCTTTCTTCTTTAACTATGCTAACTCTTCATACCATCAAGAAGCCTGTCTGTTTATTTCTATATCAGGGGTTTGGCGGCATTCTAGAAGTTATACAGCCAGCTTAAATCCATCTCCAGAAAAACTGACATTGCAAATGCTCTCTTTCTAAGTTGAACTAAATAATTGTTTTTTCTATTAATCTTATTCTTCACTCAAGCTGAGGACTAGAAAAGTTCTTTGGTTTTCCAGAAAGATATGTGAGCTAACTGAGACCCTCCCCGTGGTCTTTCTTTCTGTCATGCGGCATTGCTTATTGTACTCCTAATGCTTTTCTGGTTGGATTGATATCCCTGAAATTCATTTTGCAGCAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGT</genome_strand>
        <mrna_strand>CTTTCTCCTCCTCCTTCTTTCTTTATAAACCAAAAAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACCCATTTGATTTCTTCCCTTTTCTGTTGCTGCCCAAAAAATTGTTTACAGACCCTTTTGTTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTTTCTCCTCATATAAGAACCAACCAAGATGTTGATAG.....................................................................................................................................TCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAACTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACTTAGACTTTCCGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGCTGGAACGGGAATGGATGGAACGCCTTTCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCA-GGAGTCCAAGTTCATTTGTTGTGAACGGGGTGTTGCGTTTGGATATACCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256653" ref_strand="+" ref_description="SGN-E256653 [cLEG-40-I3]">
      <seq>gctcctcctcctttctttataaaccaaaaaaaaaaaaaagttttctcttttgcttgtctcttcactcgtttgatttcttccctttcctgttgctgtccaaaaaattgtttacagacccttttgctgaactcaagttcatgtctaatctgtataatcacaacttgaatttctcacctgcaagagctgtctctcctcatataagaaccaaccaagatgttgatagtcagtacttgacagagctgttagcagaaaggcagaagcttggaccctttacacaagttcttccaatctgcagccgactcttgaatcaagaaatacttagactttctggaatgattcccaatcaagtactcagtgactatgacagactacaacgtggaagccctagtcctgtgggttcaattgacatgatgcaacatgttggaggaaaaggtttaggtggttggaatgggaatggatggaacgcctttcaagagcaaagattaggtggaccacagggaaggcccatcgactggcaagcttcaccagggagtccaagttcatttgttgtgnaagcgggtgttgcgccttggatatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84598" stop="87578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84897" g_stop="85119" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="85120" i_stop="85252" i_length="133">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85253" g_stop="85341" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="312" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85342" i_stop="85971" i_length="630">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.927" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85972" g_stop="86135" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="476" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="86136" i_stop="87175" i_length="1040">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87176" g_stop="87278" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="581" r_length="105" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E256653" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84897" e_stop="85119"/>
          <exon e_start="85253" e_stop="85341"/>
          <exon e_start="85972" e_stop="86135"/>
          <exon e_start="87176" e_stop="87278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCTCCTCCTTTCTTTATAAACCAAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACTCGTTTGATTTCTTCCCTTTCCTGTTGCTGTCCAAAAAATTGTTTACAGACCCTTTTGCTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTCTCTCCTCATATAAGAACCAACCAAGATGTTGATAGGTAAGGGATAAAAATCCTTTTTTCTTTCCTCTTGAATTTGTGGGGTTTGAAATTTGATAGCTTTTGTGCAAGATTGATGCTTTAACAAGTTTTGTTGTTTTTGTTTTTGGGTGTTTCTTGAAATTTTTTGTAGTCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAGCTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAGGTTGGATTAAATCTTGAATTTTTATTTGCTGCTGTTAGAATATCTATGAGTTGTTTGTGCATTTCTCTGATAAACTTTTTGTATGCTCTGTTTTTTTTTTTTAATCTATAAACTAATCCTCTGCTGTTGTTTTGAGAAAGTTGTAGCTGTTGGTGCAAGTTGATCAAATCTACTGGTTTGCTGTATGTTTTTAGCTGAACAGATTTTAGTAGTAAAGACTGGATTGAAATGAGATTTTGATAAGTTTCAGAACAAGCGATATGTGTTGTTTAGATTTTGTTTGTTTAAACAGTATTCTTGCAGGAATAGATTACCAGGATCAAGTATTGGCTGTTAGGTGATGTTAAGGTTAGCATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAGGTCAGCTTATGCTTATCTCATCTTTAGGCACAATATTTAAATTCTCTTTCCACTAATTATGTATTGCTCCTTATTAGATATCTTATGTGTCTGCCAATAGGGGCTAGCTCATGGTTTCTATGCTTATTGAAACACAAACATTGTGTATGGTAATCGTAGTAAGTTAACATGGAGTGGAGACTTAAGGAGAGCAGAATAGCATTTATACAAAGATCGTCTGAGCCATTACTGTTATGGACTTATGGTGAATTCGTCTTCAGTATCACATTGACTAATAAGACTGACTGTGTCTTCTCCTTGTATAGAAATGAGAAATTAATTCAGTTCTTGAAAAGCACCCCCAAACGAAGAAGTAGGAGTTAGCTTCAGTCTAAATTTTGTGGCAAGTCTAGACTTCGTAGGATAACAACTACTCATCAAGTGCCTTAGAAACTTACTATTCATTGGAAGAATATAGGACAAACAACTTTCAAAGAATATGAAATGAGATAGTGCTAAATGCCAATGCCAGATAGTGCCAAAATTTTGGCACTTCCAATGCTGAAGCTCCGAGACTCTTCAAAGGAAAAGGATGAACTAAAGAATTGAAGCAAAATCATTAAATGGAGGAAGAAGATGAAACGCGGAGAAAAACAGCTAGATGTTCCTCTTTCTGCTTGAGTTAGAAATTTAAACACATCATGCATTGTTTCCTTTCTTCTTTAACTATGCTAACTCTTCATACCATCAAGAAGCCTGTCTGTTTATTTCTATATCAGGGGTTTGGCGGCATTCTAGAAGTTATACAGCCAGCTTAAATCCATCTCCAGAAAAACTGACATTGCAAATGCTCTCTTTCTAAGTTGAACTAAATAATTGTTTTTTCTATTAATCTTATTCTTCACTCAAGCTGAGGACTAGAAAAGTTCTTTGGTTTTCCAGAAAGATATGTGAGCTAACTGAGACCCTCCCCGTGGTCTTTCTTTCTGTCATGCGGCATTGCTTATTGTACTCCTAATGCTTTTCTGGTTGGATTGATATCCCTGAAATTCATTTTGCAGCAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTG-AAGCGGGTGTTGCG-CTTGGATATACCTG</genome_strand>
        <mrna_strand>GCTCCTCCTCCTTTCTTTATAAACCAAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACTCGTTTGATTTCTTCCCTTTCCTGTTGCTGTCCAAAAAATTGTTTACAGACCCTTTTGCTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTCTCTCCTCATATAAGAACCAACCAAGATGTTGATAG.....................................................................................................................................TCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAGCTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGNAAGCGGGTGTTGCGCCTTGGATATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337367" ref_strand="+" ref_description="SGN-E337367 [cTOE-18-P3]">
      <seq>ctaaccttaacatgtcggttgcgaagtgtgtattctgttccacataaactttagtcgaatggtgttttcaaagaggcagattacagattggtttgtgacctaattattctttgaacaaatgtttgtagaagatgaacacttttatagcaagttgtaagaggttatcttattttccttgtgtcggcacatatgccgatgaaacggtttaatttgatgtacgctattcttaatagctttaattattctccgaatggaaattctgaattttagtttcaattctttgacagaaatacttagactttctggaatgattcccaatcaagtactcagtgactatgacagactacaacgtggaagccctaatcctgtgggttcaattgacatgatgcaacatgttggaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85386" stop="86389"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85685" g_stop="86089" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E337367" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85685" e_stop="86089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGGTTAGCATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAA</genome_strand>
        <mrna_strand>CTAACCTTAACATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAATCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257940" ref_strand="+" ref_description="SGN-E257940 [cLEG-48-O7]">
      <seq>tgactatgacagactacaacgtggaagccctagtcctgtgggttcaattgacatgatgcaacatgttggaggaaaaggtttaggtggttggaatgggaatggatggaacgcctttcaagagcaaagattaggtggaccacagggaaggcccatcgactggcaagcttcaccagggagtccaagttcatttgttgtgaagcgggtgttgcgcttggatatacctgtggacagatatccgaatttcaactttgttggacggcttttaggtcctcgaggtaattctctgaagcgagtggaagcatctactggatgtcgggtatttatcagaggaaagggttcaataaaagatgctgaaaaagaggagagtctgagaggtcttccaggttatgagcacctcaatgagccactgcatgttctacttgaggcagacttacccatcaatatagtggatgtacgaatgaaacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85715" stop="88350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86015" g_stop="86135" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86136" i_stop="87175" i_length="1040">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87176" g_stop="87295" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="241" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87629" g_stop="87745" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="358" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87940" g_stop="88050" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="469" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E257940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86015" e_stop="86135"/>
          <exon e_start="87176" e_stop="87295"/>
          <exon e_start="87629" e_stop="87745"/>
          <exon e_start="87940" e_stop="88050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAGGTCAGCTTATGCTTATCTCATCTTTAGGCACAATATTTAAATTCTCTTTCCACTAATTATGTATTGCTCCTTATTAGATATCTTATGTGTCTGCCAATAGGGGCTAGCTCATGGTTTCTATGCTTATTGAAACACAAACATTGTGTATGGTAATCGTAGTAAGTTAACATGGAGTGGAGACTTAAGGAGAGCAGAATAGCATTTATACAAAGATCGTCTGAGCCATTACTGTTATGGACTTATGGTGAATTCGTCTTCAGTATCACATTGACTAATAAGACTGACTGTGTCTTCTCCTTGTATAGAAATGAGAAATTAATTCAGTTCTTGAAAAGCACCCCCAAACGAAGAAGTAGGAGTTAGCTTCAGTCTAAATTTTGTGGCAAGTCTAGACTTCGTAGGATAACAACTACTCATCAAGTGCCTTAGAAACTTACTATTCATTGGAAGAATATAGGACAAACAACTTTCAAAGAATATGAAATGAGATAGTGCTAAATGCCAATGCCAGATAGTGCCAAAATTTTGGCACTTCCAATGCTGAAGCTCCGAGACTCTTCAAAGGAAAAGGATGAACTAAAGAATTGAAGCAAAATCATTAAATGGAGGAAGAAGATGAAACGCGGAGAAAAACAGCTAGATGTTCCTCTTTCTGCTTGAGTTAGAAATTTAAACACATCATGCATTGTTTCCTTTCTTCTTTAACTATGCTAACTCTTCATACCATCAAGAAGCCTGTCTGTTTATTTCTATATCAGGGGTTTGGCGGCATTCTAGAAGTTATACAGCCAGCTTAAATCCATCTCCAGAAAAACTGACATTGCAAATGCTCTCTTTCTAAGTTGAACTAAATAATTGTTTTTTCTATTAATCTTATTCTTCACTCAAGCTGAGGACTAGAAAAGTTCTTTGGTTTTCCAGAAAGATATGTGAGCTAACTGAGACCCTCCCCGTGGTCTTTCTTTCTGTCATGCGGCATTGCTTATTGTACTCCTAATGCTTTTCTGGTTGGATTGATATCCCTGAAATTCATTTTGCAGCAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAATGTAAGCTGACTTTGTTGACAGTAGATAATGTTTAATGATCCCATCTATTTATTTATGGATCTAGGTTGGATTTACCTTTGAAGTGTCAGGTTGTATTATCTGGTGTAAATATAATGATGATGTACATGTTGCATTAAACTCTGCATTTCAACTCCCAGAGGTGCCAATTTGTACCAAAAATTATGTGATAACTCCTCATAATTAGTGACTCACTTAAATCAAAAGAAGGGAGTAGACTGTAGAGGGATGTGTTTGAAGACATTTTGATATTTCATCAAATTATTTGAGCAGTAGAAATCAGTTGCACTGAATCGTACATTTCATATGGCACAGTTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAAGTAAGTTCTTTTGACATTTTTCTGCTAACTGTCCTGCTTTTCGTCCAATATTCTTGTAAAAGGCTTTGCTTTTTCTATGATGCACTCCGTACATTTCTGTCCTCCATTTTATATCTGCGCTCCACTGGGTGTTTTGCTTTTACTTGTGTTCATCTTATATTTCTTATGCTTGTGTTTGTCTTATATTATTGTAGGAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCT</genome_strand>
        <mrna_strand>TGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT.............................................................................................................................................................................................................................................................................................................................................TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA..................................................................................................................................................................................................GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368923" ref_strand="+" ref_description="SGN-E368923 [TUS-25-B19]">
      <seq>accacagggaaggcccatcgactggcaagcttcaccagggagtccaagttcatttgttgtgaagcgggtgttgcgcttggatatacctgtggacagatatccgaatttcaactttgttggacggcttttaggtcctcgaggtaattctctgaagcgagtggaagcatctactggatgtcgggtatttatcagaggaaagggttcaataaaagatgctgaaaaagaggagagtctgagaggtcttccaggttatgagcacctcaatgagccactgcatgttctacttgaggcagacttacccatcaatatagtggatgtacgaatgaaacaagctagccaaattattgaagagttgctcagacctgtggatgagtcgcaggacttatataaaaggcaacagcttagagagcttgctttgctgaacaacaattttagagaagagagcccccaaccaaggggtagtctatctccttttagttcaagcgggatgaaacgcgcaaaaactggttggtgatgagtgctatggtatgcacagctgcttcgcatctccagacatgaggatgctaatctgcacctaaatacagcgcgcttttgtggacttcacgttgtgaaaatagtatgtgacaaaggaaacatagcagatcaaagaaaacctcaaaactgattttgttgactgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86890" stop="89140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87190" g_stop="87295" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87629" g_stop="87745" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="223" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87940" g_stop="88083" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="367" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88084" i_stop="88530" i_length="447">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88531" g_stop="88840" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="677" r_length="310" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E368923" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87190" e_stop="87295"/>
          <exon e_start="87629" e_stop="87745"/>
          <exon e_start="87940" e_stop="88083"/>
          <exon e_start="88531" e_stop="88840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAATGTAAGCTGACTTTGTTGACAGTAGATAATGTTTAATGATCCCATCTATTTATTTATGGATCTAGGTTGGATTTACCTTTGAAGTGTCAGGTTGTATTATCTGGTGTAAATATAATGATGATGTACATGTTGCATTAAACTCTGCATTTCAACTCCCAGAGGTGCCAATTTGTACCAAAAATTATGTGATAACTCCTCATAATTAGTGACTCACTTAAATCAAAAGAAGGGAGTAGACTGTAGAGGGATGTGTTTGAAGACATTTTGATATTTCATCAAATTATTTGAGCAGTAGAAATCAGTTGCACTGAATCGTACATTTCATATGGCACAGTTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAAGTAAGTTCTTTTGACATTTTTCTGCTAACTGTCCTGCTTTTCGTCCAATATTCTTGTAAAAGGCTTTGCTTTTTCTATGATGCACTCCGTACATTTCTGTCCTCCATTTTATATCTGCGCTCCACTGGGTGTTTTGCTTTTACTTGTGTTCATCTTATATTTCTTATGCTTGTGTTTGTCTTATATTATTGTAGGAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTGGTAAGCACATTTTGATTCCGACATATACAACTGTAAGCAATTGCACACAAAGCACTCATAATGTTGTACTTGTGTAGTTCTTAATCATAAATTGAAATGGACGGACTAAAAGAGTTGACATATGCAAACATCTGATATGAAGAAAAAAAAAAGACATCTCTTATGATCTGTTTTTTAGTTTCATACTTCTTTTTGTTTCATACCTAAGATGGTGACTAATAACTCTTAGAACTAAATCCCCATAGGCGAGAGGTCTAATGTAAAGATCCCTCAACGTTAGACTGATTATCTTAGTTTGACTTGACCTGGTGATTTACCAAGAGAGTTGTGAATATAAGTAGTTTGAAAGGTAGGTAAGAAATTAGTGTTAGAAGATAATTATTTTATAGTTTTGTGATTTCCTAGGATCATATTGCTAATTTCATGTTCATTTGCCTTGAATTGCAGGATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACAGGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGT</genome_strand>
        <mrna_strand>ACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT.............................................................................................................................................................................................................................................................................................................................................TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA..................................................................................................................................................................................................GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACATGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247361" ref_strand="+" ref_description="SGN-E247361 [cLEF-46-I9]">
      <seq>accacagggaaggcccatcgactggcaagcttcaccagggagtccaagttcatttgttgtgaagcgggtgttgcgcttggatatacctgtggacagatatccgaatttcaactttgttggacggcttttaggtcctcgaggtaattctctgaagcgagtggaagcatctactggatgtcgggtatttatcagaggaaagggttcaataaaagatgctgaaaaagaggagagtctgagaggtcttccaggttatgagcacctcaatgagccactgcatgttctacttgaggcagacttacccatcaatatagtggatgtacgaatgaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86890" stop="88348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87190" g_stop="87295" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87629" g_stop="87745" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="223" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87940" g_stop="88048" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="332" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E247361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87190" e_stop="87295"/>
          <exon e_start="87629" e_stop="87745"/>
          <exon e_start="87940" e_stop="88048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAATGTAAGCTGACTTTGTTGACAGTAGATAATGTTTAATGATCCCATCTATTTATTTATGGATCTAGGTTGGATTTACCTTTGAAGTGTCAGGTTGTATTATCTGGTGTAAATATAATGATGATGTACATGTTGCATTAAACTCTGCATTTCAACTCCCAGAGGTGCCAATTTGTACCAAAAATTATGTGATAACTCCTCATAATTAGTGACTCACTTAAATCAAAAGAAGGGAGTAGACTGTAGAGGGATGTGTTTGAAGACATTTTGATATTTCATCAAATTATTTGAGCAGTAGAAATCAGTTGCACTGAATCGTACATTTCATATGGCACAGTTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAAGTAAGTTCTTTTGACATTTTTCTGCTAACTGTCCTGCTTTTCGTCCAATATTCTTGTAAAAGGCTTTGCTTTTTCTATGATGCACTCCGTACATTTCTGTCCTCCATTTTATATCTGCGCTCCACTGGGTGTTTTGCTTTTACTTGTGTTCATCTTATATTTCTTATGCTTGTGTTTGTCTTATATTATTGTAGGAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAG</genome_strand>
        <mrna_strand>ACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT.............................................................................................................................................................................................................................................................................................................................................TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA..................................................................................................................................................................................................GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368922" ref_strand="+" ref_description="SGN-E368922 [TUS-25-B19](-)">
      <seq>gaaggcccatcgactggcaagcttcaccagggagtccaagttcatttgttgtgaagcgggtgttgcgcttggatatacctgtggacagatatccgaatttcaactttgttggacggcttttaggtcctcgaggtaattctctgaagcgagtggaagcatctactggatgtcgggtatttatcagaggaaagggttcaataaaagatgctgaaaaagaggagagtctgagaggtcttccaggttatgagcacctcaatgagccactgcatgttctacttgaggcagacttacccatcaatatagtggatgtacgaatgaaacaagctagccaaattattgaagagttgctcagacctgtggatgagtcgcaggacttatataaaaggcaacagcttagagagcttgctttgctgaacaacaattttagagaagagagcccccaaccaaggggtagtctatctccttttagttcaagcgggatgaaacgcgcaaaaactggttggtgatgagtgctatggtatgcacagctgcttcgcatctccagacatgaggatgctaatctgcacctaaatacagcgcgcttttgtggacttcacgttgtgaaaatagtatgtgacaaaggaaacatagcagatcaaagaaaacctcaaaactgattttgttgactgtagttgtttgttgttgaagtagaatgattaatttgatttatttgttcttgacagctaagttaacaagggtgatttcctttcctttttgggatttgtaacttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86898" stop="89244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87198" g_stop="87295" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87629" g_stop="87745" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="215" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87940" g_stop="88083" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="359" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="88084" i_stop="88530" i_length="447">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88531" g_stop="88933" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="762" r_length="403" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="770" polyA_stop="779"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E368922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87198" e_stop="87295"/>
          <exon e_start="87629" e_stop="87745"/>
          <exon e_start="87940" e_stop="88083"/>
          <exon e_start="88531" e_stop="88933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAATGTAAGCTGACTTTGTTGACAGTAGATAATGTTTAATGATCCCATCTATTTATTTATGGATCTAGGTTGGATTTACCTTTGAAGTGTCAGGTTGTATTATCTGGTGTAAATATAATGATGATGTACATGTTGCATTAAACTCTGCATTTCAACTCCCAGAGGTGCCAATTTGTACCAAAAATTATGTGATAACTCCTCATAATTAGTGACTCACTTAAATCAAAAGAAGGGAGTAGACTGTAGAGGGATGTGTTTGAAGACATTTTGATATTTCATCAAATTATTTGAGCAGTAGAAATCAGTTGCACTGAATCGTACATTTCATATGGCACAGTTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAAGTAAGTTCTTTTGACATTTTTCTGCTAACTGTCCTGCTTTTCGTCCAATATTCTTGTAAAAGGCTTTGCTTTTTCTATGATGCACTCCGTACATTTCTGTCCTCCATTTTATATCTGCGCTCCACTGGGTGTTTTGCTTTTACTTGTGTTCATCTTATATTTCTTATGCTTGTGTTTGTCTTATATTATTGTAGGAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTGGTAAGCACATTTTGATTCCGACATATACAACTGTAAGCAATTGCACACAAAGCACTCATAATGTTGTACTTGTGTAGTTCTTAATCATAAATTGAAATGGACGGACTAAAAGAGTTGACATATGCAAACATCTGATATGAAGAAAAAAAAAAGACATCTCTTATGATCTGTTTTTTAGTTTCATACTTCTTTTTGTTTCATACCTAAGATGGTGACTAATAACTCTTAGAACTAAATCCCCATAGGCGAGAGGTCTAATGTAAAGATCCCTCAACGTTAGACTGATTATCTTAGTTTGACTTGACCTGGTGATTTACCAAGAGAGTTGTGAATATAAGTAGTTTGAAAGGTAGGTAAGAAATTAGTGTTAGAAGATAATTATTTTATAGTTTTGTGATTTCCTAGGATCATATTGCTAATTTCATGTTCATTTGCCTTGAATTGCAGGATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACAGGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGTAGTTGTTTGTTGTTGAAGTAGAATGATTAATTTGATTTATTTGTTCTTGACAGCTAAGTTAACAAGGGTGATTTCCTTTCCTTTTTGGGATTT</genome_strand>
        <mrna_strand>GAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT.............................................................................................................................................................................................................................................................................................................................................TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA..................................................................................................................................................................................................GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACATGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGTAGTTGTTTGTTGTTGAAGTAGAATGATTAATTTGATTTATTTGTTCTTGACAGCTAAGTTAACAAGGGTGATTTCCTTTCCTTTTTGGGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715879" ref_strand="+" ref_description="SGN-E715879 [FB15CB03]">
      <seq>ttcttctctatctcgaaccctagcttgttcatcgatcggagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctgggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttatggtctgttgaaacttttgtgcatcctgaatcttgtgctgaattggagtctgcaaaatagttcatcatacacaccatttatttgctatttcatcaattgtcgcgttcactctgaaataaaatatggtgaatatagcataattaattattaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93576" stop="96550"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93876" g_stop="94111" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96249" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="613" r_length="377" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="614" polyA_stop="635"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E715879" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E715879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93876" e_stop="94111"/>
          <exon e_start="95872" e_stop="96249"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCTCTATCTCGAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTCATCAATTGTCGCGTTCACTCTGAAATAAAATATGGTGAATATAGCATAATTAATTATTC</genome_strand>
        <mrna_strand>TTCTTCTCTATCTCGAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCT-GGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTCATCAATTGTCGCGTTCACTCTGAAATAAAATATGGTGAATATAGCATAATTAATTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352062" ref_strand="+" ref_description="SGN-E352062 [cTOS-13-L19]">
      <seq>tctatctcgaaccctagcttgttcatcgatcggagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctggggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttatggtctgttgaaacttttgtgcatcctgaatcttgtgctgaattggagtctgcaaaatagttcatcatacacaccatttatttgctatttcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93582" stop="96492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93882" g_stop="94111" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96192" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="551" r_length="321" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E352062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93882" e_stop="94111"/>
          <exon e_start="95872" e_stop="96192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTATCTCGAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTCAT</genome_strand>
        <mrna_strand>TCTATCTCGAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344214" ref_strand="+" ref_description="SGN-E344214 [cTOF-16-D10]">
      <seq>gaaccctagcttgttcatcgatcggagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctggggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93590" stop="96399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93890" g_stop="94111" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96098" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="449" r_length="227" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="460"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E344214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93890" e_stop="94111"/>
          <exon e_start="95872" e_stop="96098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</genome_strand>
        <mrna_strand>GAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464950" ref_strand="+" ref_description="SGN-E464950 [cPRO-19-L5]">
      <seq>gttcatcgaaaatcgatcggaaaaatcaccattaaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaaatgcaactagttgttttatagtcttttgaaacttttgtgcatcctgaatcttgtaccgagttggagtctgcaaaatagttcatcatacacctcattttttcatcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96487"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93895" g_stop="94111" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96178" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="524" r_length="307" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E464950" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E464950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93895" e_stop="94111"/>
          <exon e_start="95872" e_stop="96178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTT</genome_strand>
        <mrna_strand>GTTCATCGAAAATCGATCGGAAAAATCACCATTAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATAGTCTTTTGAAACTTTTGTGCATCCTGAATCTTGTACCGAGTTGGAGTCTGCAAAATAGTTCATCATACACCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420672" ref_strand="-" ref_description="SGN-E420672 [STM-31-H21]">
      <seq>gttcatcgaaaatcgatcggaaaaatcaccattaaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaantgcaactagttgtttccaaaaaaagatgtaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96397"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93895" g_stop="94111" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96098" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="444" r_length="227" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E420672" ref_strand="-">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420672" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="93895" e_stop="94111"/>
          <exon e_start="95872" e_stop="96098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</genome_strand>
        <mrna_strand>GTTCATCGAAAATCGATCGGAAAAATCACCATTAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAANTGCAACTAGTTGTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420671" ref_strand="+" ref_description="SGN-E420671 [STM-31-H21]">
      <seq>gttcatcgaaaatcgatcggaaaaatcaccattaaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaaatgcaactagttgttttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93895" g_stop="94111" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96098" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="444" r_length="227" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="456"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E420671" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93895" e_stop="94111"/>
          <exon e_start="95872" e_stop="96098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</genome_strand>
        <mrna_strand>GTTCATCGAAAATCGATCGGAAAAATCACCATTAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354056" ref_strand="+" ref_description="SGN-E354056 [cTOS-16-I6]">
      <seq>ttgttcatcgatcggagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctggggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttatggtctgttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93600" stop="96412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93900" g_stop="94111" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96112" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="453" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="454" polyA_stop="470"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E354056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93900" e_stop="94111"/>
          <exon e_start="95872" e_stop="96112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAA</genome_strand>
        <mrna_strand>TTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356274" ref_strand="+" ref_description="SGN-E356274 [cTOS-20-P4]">
      <seq>ttgttcatcgatcggagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggaaaaagagaaagtagaacacagatactaagttcctgtcgtcattttgtccggtgacccacgtataaatgaaagttctgttttgtcactttgtctgggggaggactgctattttctattttctgttttgaataggaaaataagtcatgctttggaaactgctacccatcatttttgaggaaattttactttttatgggttatttaaatgcaactagtttgttttatgggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93600" stop="96405"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93900" g_stop="94111" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96105" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="463" r_length="251" r_score="0.816"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E356274" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93900" e_stop="94111"/>
          <exon e_start="95872" e_stop="96105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCA-TTTGTCCGGTGACCAACGTATAAATG-AAGTTCTG-TTTGTCAC-TTGTCT-GGGGAGGACTGCTA-TTTCTA-TTTCTG-TTTGAATAGG-AAATAAGTCATGCTTTGG-AACTGCTA-CCATCA-TTTTGAGG-AATTTTAC-TTTTAT-GGTTAATTAAATGCAACTAG-TTGTTTTAT-GGTCT</genome_strand>
        <mrna_strand>TTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAAAAAGAGAAAGTAGAACACAGATACTAAGTTCCTGTCGTCATTTTGTCCGGTGACCCACGTATAAATGAAAGTTCTGTTTTGTCACTTTGTCTGGGGGAGGACTGCTATTTTCTATTTTCTGTTTTGAATAGGAAAATAAGTCATGCTTTGGAAACTGCTACCCATCATTTTTGAGGAAATTTTACTTTTTATGGGTTATTTAAATGCAACTAGTTTGTTTTATGGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E613081" ref_strand="+" ref_description="SGN-E613081 [62851]">
      <seq>cgaaaatcgatcggaaaaatcaccattaaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaaatgcaactagttgttttatagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93901" g_stop="94111" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96104" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="444" r_length="233" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E613081" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E613081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93901" e_stop="94111"/>
          <exon e_start="95872" e_stop="96104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTC</genome_strand>
        <mrna_strand>CGAAAATCGATCGGAAAAATCACCATTAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711905" ref_strand="+" ref_description="SGN-E711905 [FB03BD03]">
      <seq>cattaatcggagaaatcaccgataagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcgggcctctcattggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctgggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttatggtctgttgaaacttttgtgcatcctgaatcttgtgctgaattggagtctgcaaaatagttcatcatacacaccatttatttgctatttaaaaaacaggagaaatatatatacaggtaaaacacaaaattctctggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93605" stop="96495"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93905" g_stop="94111" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="207" r_length="207" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96190" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="525" r_length="318" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E711905" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93905" e_stop="94111"/>
          <exon e_start="95872" e_stop="96190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTC</genome_strand>
        <mrna_strand>CATTAATCGGAGAAATCACCGATAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGGCCTCTCATTGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCT-GGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619151" ref_strand="+" ref_description="SGN-E619151 [69837]">
      <seq>ttgattcatcgaaaatcgatcggaaaaatctccattaaaattcaggtaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggccctcttatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaaagttctgttcgtcatttgtcttgtgaacacatataactcaagttctgttcgtcatttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactactaccgtcattttgaggagttttacttttatggttaattaaatgcaactagttgttttatgttcttttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93906" g_stop="94111" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="220" r_length="206" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96105" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="454" r_length="234" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="459" polyA_stop="471"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E619151" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E619151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93906" e_stop="94111"/>
          <exon e_start="95872" e_stop="96105"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACT-AAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCT</genome_strand>
        <mrna_strand>ATCGATCGGAAAAATCTCCATTAAAATTCAGGTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGCCCTCTTATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAAGTTCTGTTCGTCATTTGTCTTGTGAAC-ACATATAACTCAAGTTCTGTTCGTCATTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTACTACCGTCATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E483603" ref_strand="+" ref_description="SGN-E483603 [cSTE-10-K5]">
      <seq>ctagcttgttcatcgaaaatcgatcggaaaaatcaccattaaaattcagctaaaatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactatcttgctcggccctcttatcggcacctactcgtacgtgcagcatttgctggagaaggagaagttagaacacagatactaaagttctgtttggcatttgtcttgtgaacacacatattactcaagttctgttcgtcatttgtctggggaagactgctatttctatttctgggagaacaagaaataagtcatgcttctgaactactaccgtcattttgaggaggtttacttttatgggtaattaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93606" stop="96385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93906" g_stop="94111" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="224" r_length="206" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96085" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="440" r_length="216" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E483603" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E483603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93906" e_stop="94111"/>
          <exon e_start="95872" e_stop="96085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACT-AAGTTCTGTTCGTCATTTGTCCGGTGACCA-ACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGC</genome_strand>
        <mrna_strand>ATCGATCGGAAAAATCACCATTAAAATTCAGCTAAAATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTATCTTGCTCGGCCCTCTTATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTGCTGGAGAAGGAGAAGTTAGAACACAGATACTAAAGTTCTGTTTGGCATTTGTCTTGTGAACACACATATTACTCAAGTTCTGTTCGTCATTTGTCTGGGGAAGACTGCTATTTCTATTTCTGGGAGAACAAGAAATAAGTCATGCTTCTGAACTACTACCGTCATTTTGAGGAGGTTTACTTTTATGGGTAATTAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E316864" ref_strand="+" ref_description="SGN-E316864 [cTOA-27-C8]">
      <seq>gagaaatcaccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtaagtagttccatcaagtaaattcaatctcaatccctaactttgttgagatcggctgtgttaattaatcatctatacttggaagcatttcgtgatattgtacctgtaaatatttgtcatttctgtcttctttgcttcgtcgttttcacagttcttctctcaggctctgattcccgcatccaaagtacttgttaacaaattggttccacttttgattgcatagatttaagctctcccgtataatttcgttgtttttaattggaatagaatgaagttgcttatatatccaatatatgacagcttattcgattcttaccaaatcaatcaattaattaactatgaatcaattcaaaattatgtattccaatttagtgagcgcctagatgaagcacactcctgttaattttgtatcaaaggatacctcacagttatgactattaggacgttttcattgacctatgtcatacctctgaatttgaagctgtgtgtgctttgagacggctcaaattgacgggtccatttcatacttgtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93614" stop="94948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93914" g_stop="94648" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E316864" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93914" e_stop="94648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGG</genome_strand>
        <mrna_strand>GAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290892" ref_strand="+" ref_description="SGN-E290892 [cLET-10-N3]">
      <seq>caccgttaagtttcagctaagatggggaaacaaccagttaagctgaaagcagttgtttacgctttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctggggaggactgctatttctatttctgtttgaataggaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatggttaattaaatgcaactagttgttttatggtctgttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93621" stop="96412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93921" g_stop="94111" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96112" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="432" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E290892" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93921" e_stop="94111"/>
          <exon e_start="95872" e_stop="96112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAA</genome_strand>
        <mrna_strand>CACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617951" ref_strand="+" ref_description="SGN-E617951 [68624]">
      <seq>ttaaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaaatgcaactagttgttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93626" stop="96399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93926" g_stop="94111" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96098" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="413" r_length="227" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="414" polyA_stop="453"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E617951" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E617951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93926" e_stop="94111"/>
          <exon e_start="95872" e_stop="96098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</genome_strand>
        <mrna_strand>TTAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405492" ref_strand="+" ref_description="SGN-E405492 [PPC-18-O10]">
      <seq>taaaattcagctaagatggggaaacaaccagttaagctgagagcagttgtttacgccttatcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcatcggcacctactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttatgttcgtcatttgtctggtgacctacgtataactgaagttctgttcgtcacttgtctggggaggactgctatttctatttctgtttgaacaggaaataagtcatgctttggaactgctaccgttattttgaggagttttacttttatggttaattaaatgcaactagttgttttatagtcttttgaaacttttgtgcatcctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93627" stop="96429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93927" g_stop="94111" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96128" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="442" r_length="257" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="443" polyA_stop="452"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E405492" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93927" e_stop="94111"/>
          <exon e_start="95872" e_stop="96128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGA</genome_strand>
        <mrna_strand>TAAAATTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAGAGCAGTTGTTTACGCCTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATCGGCACCTACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTATGTTCGTCATTTGTCTGGTGACCTACGTATAACTGAAGTTCTGTTCGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAACAGGAAATAAGTCATGCTTTGGAACTGCTACCGTTATTTTGAGGAGTTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATAGTCTTTTGAAACTTTTGTGCATCCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354966" ref_strand="+" ref_description="SGN-E354966 [cTOS-19-O2]">
      <seq>atcgccattccaacagaagattatgccaggtctatggaaggaccttcctggtaaaatccatcacaaagtctctgaaaattggatcagcgctactctcttgctcggtcctctcattggcacatactcgtacgtgcagcatttcctggagaaggagaagttagaacacagatactaagttctgttcgtcatttgtccggtgaccaacgtataaatgaagttctgtttgtcacttgtctggggaggactgctatttctatttctgtttgaataagaaataagtcatgctttggaactgctaccatcattttgaggaattttacttttatgggtaattaaatgcaactagttgttttatggtctgttgaaacttttgtgcatcctgaatcttgtgctgaattggagtctgcaaaatagttcatcataaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="93686" stop="96472"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93986" g_stop="94111" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95872" g_stop="96179" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="434" r_length="308" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E354966" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93986" e_stop="94111"/>
          <exon e_start="95872" e_stop="96179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGGATATGCTTACAATAAAAGGACCGAAATTTATAGCCAGCTTAGAAGGGGAACTTAGTTGGTCAGGCTTTTGTTGGAATATAACATATGGGAGTGGAGAGCTGTTAGAATATGTTACGAGCATGAATACCAAACATTTATGTTTGGCATATCAGAGCTTTTGGAGGTACCTACTAAGACGACCCATGAGATACGTGAAGCCTTCACACATTGTGAATCTTCCTTCATTTGTTTTGATGAAATACAATTACACAATGCCAATTGAAATTGTTGAAGACATTGGCTTCTATAAGTATGAAGCTGGCGGTCTTTCTTTCAAGCCTGCTTACTGATCGGAATAGCAAGGTCAATAAAAGATCTTCCTTTGTTTTGTATTGTTCATGTGGTGTGGATTCTTATTTAATTCCTGTTTCTTTGAGGGTTGGGGTTGGAAAGGACATGGTGTATGTTAGTTCTTTTGAGTAGAAAAAGTTTTCTTGGTAAAGCATGCGAGCTTAAACCTCAAATTGATCTCAGTTTATATTTTTGTTGGAAAAAAGTTGATATGCAGCTATATAATCCTTTTCGATATGTAAAATGTGTCGATATAAAATTATTTCACCACTAGTAACTAGATGTAGTTTGATTTTCTAGGATATATAATTTGAGACATATTTTAGCACTAGTTAGATTATCATGTACTTTCACATATTGTGTATATTAATAACTTGTTCAAGAACATATTCTTTAACGGAATCTTAACTTAAGTGTTCTTGTTTTTTCTCATTTTTCTGATATGGTCAAAATAAATCCGATTAACTTCTTTCTCCTCTATTTTCTTTTTGCTGTTCATTTTTGTCTCCAAGCAAGTAAAAAAGTGATTGCTGCAAAAGTCTTAGTTATTTTGAGTTGTAATTTTTCTCAAGTATGAGCTGCATTCAGGCGTAGAGGAAATTTACTTGTGTAGACTAGACTGTTGAAGGTTATTGGCAAGATTATGGTCATTGTTTTCATCTTCTGTTGGCTTGAGCTTTCTGAGTCAGTTATCCCTCCCCTCTTTTCCCCTTATAATAATAGATAACCAAGATGTAAGGATTTTCTTTTGACTTATTGTCACCTGGAGCAATTCTTTGCTAAGTTAGGTTCTAGAAATTCCTATGTTATTGGTTGAGAATCTCCAACAAATATATGTATGTGGTTCTAGTGGTTGCTTCATTCATAGCCAATGTATTTCTTTATGCATGCAGGTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTA</genome_strand>
        <mrna_strand>ATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAAGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGGTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608082" ref_strand="+" ref_description="SGN-E608082 [24061]">
      <seq>tgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggcaattgaagtggcatattctcacaaatagcacatttagttttctagtctgttgaatgaaactttgttacttgaatttctgtctttgcatgaactttatcagtagtgtccaattgaacttttttcattatgttctgtatttgaatttcttgtacggttaagagctcgtatgttttgatgaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97579" stop="88763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97279" g_stop="97230" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97103" g_stop="96855" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="297" r_length="247" r_score="0.900"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96854" i_stop="96210" i_length="645">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.943" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96209" g_stop="96175" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="332" r_length="35" r_score="0.543"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E608082" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97279" e_stop="97230"/>
          <exon e_start="97103" e_stop="96855"/>
          <exon e_start="96209" e_stop="96175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTG-AATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATTACATTCTTTAGTGCCGCCCCCTGCAACTAATTATTTCTGAGGCGCATAAATTGAAACAAGCCTGCTTGTGGTGAAGACGTATATTCCCATAAATCTAGTTGGTGCAATTAGTACGGAGAAGTACTGTTTATTATCAACTTGTATTTTTAGAAAAATAGTACTTCCTCTGTTCTTTTTTTTAAGCATTGTCATAATTTATTTTTTTGAGAATGGAAGAAAGTTTTTTTATGGGTAGAGTGCATCCGATTTAAACAGCAAAATGGGTAAGTTAATGACACTCTTCGAGTTTTGGCCAAGTTTGTCGTGCTCGTACTGTCTCTTGGCAACAGTGTGAACTTGTTGCCATTACAGATTAGACTCCGAGATTTTCACAAGATAACTTTTTCAGCGAAGTGGTACAGATAACAGAAGTCTACTATTTCCTTAAATCTATGATCTTGCTGATCAAATTAATATGCTCATATAGATGAATACACCTTAACAAATGGGTAAAGATAAGATCAGATTATCCAAATATTAGACGTGTATTTGGATCTTCCATAGGCACTGTGCAAGTTTGGGAATCATATTCTTGAATGAATAATTAATTATGCTATATTCACCATATTTTATTTCAGAGTGAACGCGACAATTGATGAAATAGCAAATAAAT</genome_strand>
        <mrna_strand>TGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGCAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGAAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTTATCAGTAGTGTCCAATTGAAC-TTTTT----TCATTATGTTCTGTATTTG-AATTTCTTGTACGGTTAAGAGCTCGTATGTTTTGATGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429292" ref_strand="-" ref_description="SGN-E429292 [STM-51-H4]">
      <seq>gggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaatttcttgtacggttaagagcttgtttgttttgatgaattgatacctctagtgatgggtggcattaacattcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112823" stop="96521"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97860" g_stop="97717" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="226" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96815" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="519" r_length="293" r_score="0.893"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E429292" ref_strand="-">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97860" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATT-ACATTCTTTAGT</genome_strand>
        <mrna_strand>GGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTTGTTTGTTTTGATGAATTGATACCTCTAGTGATGGGTGGCATTAACATTCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355402" ref_strand="+" ref_description="SGN-E355402 [cTOS-25-A6]">
      <seq>cattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaatttcttgtacggttaagagctcgtaagttttgatgaattgatacttcttgtgacaggtggtattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98251" stop="96524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97951" g_stop="97717" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="317" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96825" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="596" r_length="279" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="597" polyA_stop="607"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E355402" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355402" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97951" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATTAC</genome_strand>
        <mrna_strand>CATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557252" ref_strand="-" ref_description="SGN-E557252 [16022]">
      <seq>gatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctccgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatgtagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaatttcttgtacggttaagagcttgtttgttttgatgaattgatacctctagtgatgggtggcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112867" stop="96526"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97904" g_stop="97717" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="271" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96826" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="552" r_length="281" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E557252" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557252" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97904" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCT-CGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATTA</genome_strand>
        <mrna_strand>GATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATGTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTTGTTTGTTTTGATGAATTGATACCTCTAGTGATGGGTGGCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E601942" ref_strand="+" ref_description="SGN-E601942 [54993]">
      <seq>cacgagggttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtatctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaatttcttgtacggttaagagcttgtttgttttgatgaattgatacctctagtgatgggtggcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112720" stop="96528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97761" g_stop="97717" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.844"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="126" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96828" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="405" r_length="279" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E601942" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E601942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97761" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTAT</genome_strand>
        <mrna_strand>CACGAGGGTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTA-TCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTTGTTTGTTTTGATGAATTGATACCTCTAGTGATGGGTGGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715175" ref_strand="+" ref_description="SGN-E715175 [FB13CC05]">
      <seq>tcaattgcagtgacgctccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaaatttcttgtacggttaagagctcgtaaagtttgatgaattgataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99558" stop="96548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="543" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="625" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96840" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="890" r_length="265" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E715175" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>889</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTG-AAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGT</genome_strand>
        <mrna_strand>TCAATTGCAGTGACGCTCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAAATTTCTTGTACGGTTAAGAGCTCGTAAAGTTTGATGAATTGATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553782" ref_strand="+" ref_description="SGN-E553782 [cTSC-2-D19]">
      <seq>cgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcacccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaatttcttgtacggttaagagctcgtaagttttgatgaattgatactttanaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="96545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96845" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="890" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="892" polyA_stop="907"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E553782" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTT</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCACCCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413321" ref_strand="-" ref_description="SGN-E413321 [STM-17-P13]">
      <seq>caagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgctttccacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtatgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctggatagnaatttcttgtacggttccatttagattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113010" stop="96577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98047" g_stop="97717" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="413" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96864" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="654" r_length="241" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E413321" ref_strand="-">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>653</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98047" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAG</genome_strand>
        <mrna_strand>CAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTCCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTATGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGGA-TAGNAATTTCTTGTACGGTT-CCATTTAGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610357" ref_strand="+" ref_description="SGN-E610357 [57516]">
      <seq>catgttttgcgaattaacaagatgttgtcgtgtgctgtagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttctagtctgttgaatgaaactttgttacttgaatttctgtctttgcatgaactttatcagtagtgtccaattgaacttttttcattatgttctgtatttgaatttcttgtacggttaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98246" stop="96573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97946" g_stop="97717" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="312" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96868" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="545" r_length="233" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E610357" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97946" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCG</genome_strand>
        <mrna_strand>CATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGTAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGAAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTTATCAGTAGTGTCCAATTGAAC-TTTTT----TCATTATGTTCTGTATTTG-AATTTCTTGTACGGTTAAAACAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E618095" ref_strand="+" ref_description="SGN-E618095 [68769]">
      <seq>tggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaatttcttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112269" stop="96582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97718" g_stop="97717" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="84" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96869" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="322" r_length="238" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E618095" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>319</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E618095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97718" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTC</genome_strand>
        <mrna_strand>TG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAATTTCTTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E587078" ref_strand="+" ref_description="SGN-E587078 [78191]">
      <seq>gccagagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaatgttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagtttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaatttcttgtacggttaagagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112729" stop="96571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97766" g_stop="97717" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="134" r_length="83" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96871" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="369" r_length="235" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E587078" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E587078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97766" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCA-AGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAA-GTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGC</genome_strand>
        <mrna_strand>GCCAGAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAATGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTT-TAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552900" ref_strand="+" ref_description="SGN-E552900 [cTSB-5-G17]">
      <seq>agaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaatttcttgtacggttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98413" stop="96573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98113" g_stop="97717" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="479" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96872" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="711" r_length="232" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E552900" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98113" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAG</genome_strand>
        <mrna_strand>AGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714812" ref_strand="+" ref_description="SGN-E714812 [FB12CA06]">
      <seq>ggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaaatttcttgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98287" stop="96582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97987" g_stop="97717" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="271" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="353" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96872" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="586" r_length="233" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E714812" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97987" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTG-AAATTTCTTGTACGGTTAAGAG</genome_strand>
        <mrna_strand>GGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAAATTTCTTGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419140" ref_strand="-" ref_description="SGN-E419140 [STM-29-E11]">
      <seq>tccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctgtacgtcaaaagatcattgtcagcagaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttctagtctgttgaatgaaactttgttacttgaatttctgtctttgcatgaacttgatcagtagtatccaattgaacatttttgaaattatgttctgtatttgaaatttcttgtacggttaaaaaaaaaaaaaaaaaaaaaactcgaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98253" stop="96573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97953" g_stop="97717" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="319" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96873" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="550" r_length="231" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="551" polyA_stop="569"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E419140" ref_strand="-">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419140" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97953" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCT-A--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGA</genome_strand>
        <mrna_strand>TCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGTACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGAAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTAGTATCCAATTGAACATTTTTGAAA-T-T-ATGTTCTGTATTTGAAATTTCTTGTACGGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552901" ref_strand="+" ref_description="SGN-E552901 [cTSB-5-G18]">
      <seq>agaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaatttcttgtacgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98413" stop="96579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98113" g_stop="97717" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="479" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96879" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="704" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E552901" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552901" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98113" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGG</genome_strand>
        <mrna_strand>AGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608755" ref_strand="+" ref_description="SGN-E608755 [24748]">
      <seq>gtaagcctcaggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtatttgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112833" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97870" g_stop="97717" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="235" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96888" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="454" r_length="219" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E608755" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97870" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96888"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTT</genome_strand>
        <mrna_strand>GTAAGCCTCA-GGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTTGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711179" ref_strand="+" ref_description="SGN-E711179 [FB01AH10]">
      <seq>catctattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaataataatgttctgtatttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99260" g_stop="99218" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.95"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="545" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="627" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96889" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="842" r_length="215" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E711179" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>842</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99260" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATT</genome_strand>
        <mrna_strand>CATCTATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATAATAATGTTCTGTATTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603479" ref_strand="+" ref_description="SGN-E603479 [56569]">
      <seq>cgcagatcaattgcagagacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttctagtctgttgaatgaaaactttgttacttgaattctgtctttgcatgaactttatcagtagtgtgcagttgaacattttgaaaacattatgtctgtatttgactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="96634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96890" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="846" r_length="215" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E603479" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATG-GAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAAT</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGAGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGAAAACTTTGTTACTTGAA-TTCTGTCTTTGCATGAACTTTATCAGTAGTGTGCAGTTGAACA-TTTTGAAAACATTATG-TCTGTATTTGACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429956" ref_strand="-" ref_description="SGN-E429956 [STM-52-L24]">
      <seq>ccaaagatcaggatttatgatgtgggcatgaagagaaagggagtgnatgagttcctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctttgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatttgaaatacaagtcagagaaccgtattttcccagatggtgtgaatgctaagctttttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatttgcttagggaattgaagtggcatattttcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagtagtatccaattgaacatttttgaaattattatgttctgtattggaaaaaaaaaaaaaaaaaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113107" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98144" g_stop="97717" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="509" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96892" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="724" r_length="215" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="725" polyA_stop="743"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E429956" ref_strand="-">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429956" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98144" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAAC-CTA--ATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTGNATGAGTT-CCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTTTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATTTGAAATACAAGTCAGAGAACCGTATTTTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTTTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATTTGCTTAGGGAATTGAAGTGGCATATTTTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGTAGTATCCAATTGAACATTTTTGAAATTATTATGTTCTGTATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309263" ref_strand="+" ref_description="SGN-E309263 [cLEY-22-G16]">
      <seq>ttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattattaatgttctgtatttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98175" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97875" g_stop="97717" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="241" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96892" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="454" r_length="213" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="467"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E309263" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97875" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTA-TAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>TTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATTAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230456" ref_strand="+" ref_description="SGN-E230456 [cLEL-35-E5](-)">
      <seq>cccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcccaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaaaaaccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98164" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97864" g_stop="97717" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="230" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96892" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="442" r_length="212" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="449" polyA_stop="464"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E230456" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97864" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCCCAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230818" ref_strand="+" ref_description="SGN-E230818 [cLEL-35-E5](-)">
      <seq>ctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaattataatgttctgtatttgaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98149" stop="96591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97849" g_stop="97717" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="215" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96892" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="427" r_length="212" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="449"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E230818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E230818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97849" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288789" ref_strand="+" ref_description="SGN-E288789 [cLES-17-C14]">
      <seq>gagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98357" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98057" g_stop="97717" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="423" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96906" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="621" r_length="198" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E288789" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98057" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAAT</genome_strand>
        <mrna_strand>GAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484128" ref_strand="-" ref_description="SGN-E484128 [cSTE-12-M11]">
      <seq>gcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttctagtctgttgaatgaaactttgttactttaatttctgtctttgcatgaacttaatcagtagtatccaattgaacatttttgaaatttaaaaaaaaaaaaaaaaaactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98327" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98027" g_stop="97717" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="311" r_length="311" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="393" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96911" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="589" r_length="196" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="609"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E484128" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E484128" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="98027" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAAT---TAGTATCCAATTGAACATTTTTGAAATT</genome_strand>
        <mrna_strand>GCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGAAACTTTGTTACTTTAATTTCTGTCTTTGCATGAACTTAATCAGTAGTATCCAATTGAACATTTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255466" ref_strand="+" ref_description="SGN-E255466 [cLEG-30-A12]">
      <seq>gaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggggaaggggaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctaatctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98415" stop="96614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98115" g_stop="97717" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="481" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96914" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="671" r_length="190" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E255466" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98115" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</genome_strand>
        <mrna_strand>GAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGGGAAGGGGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAATCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227610" ref_strand="+" ref_description="SGN-E227610 [cLEL-30-F3](-)">
      <seq>catccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctatgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98255" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97955" g_stop="97717" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="321" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96914" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="511" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="512" polyA_stop="526"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E227610" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97955" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</genome_strand>
        <mrna_strand>CATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTATGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227321" ref_strand="+" ref_description="SGN-E227321 [cLEL-30-F1](-)">
      <seq>gtcgtgtgctggagctgatagactccaaactggtataggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctatgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98220" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97920" g_stop="97717" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="285" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96914" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="475" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="476" polyA_stop="490"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E227321" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97920" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</genome_strand>
        <mrna_strand>GTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTAT-AGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTATGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227536" ref_strand="+" ref_description="SGN-E227536 [cLEL-30-F1](-)">
      <seq>cccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98164" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97864" g_stop="97717" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="230" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96914" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="420" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="421" polyA_stop="435"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E227536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97864" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</genome_strand>
        <mrna_strand>CCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227249" ref_strand="+" ref_description="SGN-E227249 [cLEL-30-F3](-)">
      <seq>cagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98162" stop="96607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97862" g_stop="97717" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="228" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96914" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="418" r_length="190" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="433"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E227249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97862" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</genome_strand>
        <mrna_strand>CAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714275" ref_strand="+" ref_description="SGN-E714275 [FB11AA02]">
      <seq>cgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="96616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96916" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="819" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E714275" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>819</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714275" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTG</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281815" ref_strand="-" ref_description="SGN-E281815 [cLER-14-F20]">
      <seq>gttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttgcatgaacctaattagtatccaattgaacattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98258" stop="96617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97958" g_stop="97717" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="324" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96917" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="511" r_length="187" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E281815" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281815" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="97958" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTT</genome_strand>
        <mrna_strand>GTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456924" ref_strand="+" ref_description="SGN-E456924 [cPRO-1-G19]">
      <seq>caattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatgaactttatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96935" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="793" r_length="169" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E456924" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGT</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGAACTTTATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260957" ref_strand="+" ref_description="SGN-E260957 [cLEG-55-B12]">
      <seq>cagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagntgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgntgcttgaatttttgtctttgcatgaaccctattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99562" stop="96636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99262" g_stop="99218" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="547" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="629" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96936" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="798" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E260957" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99262" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAG-TGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAG</genome_strand>
        <mrna_strand>CAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGNTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGNTGCTTGAATTTTTGTCTTTGCATGAACCCTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261382" ref_strand="+" ref_description="SGN-E261382 [cLEG-57-I14]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctggtgaatgggaacttgntgcttgaaatttttgtctttgcatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="96644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96944" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="791" r_length="161" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E261382" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTG-AATTTTTGTCTTTGCATGAAC</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGGTGAATGGGAACTTGNTGCTTGAAATTTTTGTCTTTGCATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E348315" ref_strand="+" ref_description="SGN-E348315 [cTOF-27-P23]">
      <seq>tcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgntgcttgaatttttgtctttgcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99558" stop="96645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="543" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="625" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96945" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="784" r_length="159" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E348315" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAA</genome_strand>
        <mrna_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGNTGCTTGAATTTTTGTCTTTGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453970" ref_strand="+" ref_description="SGN-E453970 [cSTS-21-B10]">
      <seq>atcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagaagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaccatggtcgacttgctgcacgtcaaccctgaaagggccttccttacatctgcttanggaattgaagtggcatattctcacaaatagcacatttagttntttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99259" g_stop="99218" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="545" r_length="503" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="627" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96946" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="785" r_length="158" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E453970" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99259" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAA-AAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAA-CCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGA</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGC-ACCATGGTCGACTTGCTGCACGTCAACCCTGAAAGGGCCTTCCTTACATCTGCTTANGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTNTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407135" ref_strand="+" ref_description="SGN-E407135 [PPI-6-I13]">
      <seq>ccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttanggaattgaagtggcatattctcacaaatagcacatttagttntttagtctgttgaatgaaactttgttacttgaaattctgtctttgcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99543" stop="96647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99243" g_stop="99218" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="528" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="610" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96947" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="767" r_length="157" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E407135" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99243" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATG</genome_strand>
        <mrna_strand>CCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTANGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTNTTTAGTCTGTTGAATGAAACTTTGTTACTTGAAATTCTGTCTTTGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725185" ref_strand="+" ref_description="SGN-E725185 [FC26BD04]">
      <seq>ggccaaatcggccgaattgacagacaattgttccgccgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttgcttgaatttttgtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99584" stop="96651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99277" g_stop="99218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="83" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="585" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="667" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96951" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="820" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E725185" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99277" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96951"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTG</genome_strand>
        <mrna_strand>ACAATTGTTCCGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328481" ref_strand="+" ref_description="SGN-E328481 [cTOC-23-A17]">
      <seq>acctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagtatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaaagggccttccctacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagtttttctagtctgttgaatggaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98517" stop="96673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="97717" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="583" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96973" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="716" r_length="133" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E328481" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGG-AAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAG-TTTTCTAGTCTGTTGAATGGAACTTT</genome_strand>
        <mrna_strand>ACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGTATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAAGGGCCTTCCCTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTTCTAGTCTGTTGAATGGAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E725130" ref_strand="+" ref_description="SGN-E725130 [FC26AF10]">
      <seq>aatcggccgaattgacagacaattgttaagccgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggccaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctagtctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99584" stop="96683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99277" g_stop="99218" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="78" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="580" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="581" r_stop="662" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96983" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="783" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E725130" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>765</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99277" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGA</genome_strand>
        <mrna_strand>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGCCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456028" ref_strand="+" ref_description="SGN-E456028 [cSTS-28-G6]">
      <seq>gcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacaaatagcacatttagttttttagtctgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98513" stop="96683"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98213" g_stop="97717" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="579" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96983" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="700" r_length="121" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E456028" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456028" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98213" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGA</genome_strand>
        <mrna_strand>GCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242610" ref_strand="+" ref_description="SGN-E242610 [cLED-30-P12]">
      <seq>gggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaattgaagtggcataatctcacaaatagcacatttagttttctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98365" stop="96691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98065" g_stop="97717" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="431" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96991" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="544" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E242610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98065" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAG</genome_strand>
        <mrna_strand>GGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321701" ref_strand="+" ref_description="SGN-E321701 [cTOB-25-G11]">
      <seq>ttgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaaaggccttcttacatctgcttagtgaattgaagtggcataatctcacaatagcacatttagttttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99554" stop="96693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99254" g_stop="99218" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="539" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="621" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="96993" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="730" r_length="109" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321701" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99254" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCT</genome_strand>
        <mrna_strand>TTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAAGGCCTT-CTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCAC-AATAGCACATTTAGTTTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557362" ref_strand="+" ref_description="SGN-E557362 [16148]">
      <seq>atccattccatgttttgcgaattaacaagatgttttcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggttgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaaggggcttccttacatctgcttagggaattggaaagtgggcattattctcacaaaatagcacatttagtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98254" stop="96695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97954" g_stop="97717" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="321" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96995" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="435" r_length="114" r_score="0.881"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E557362" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97954" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGG-TGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATT-G-AAGT-GGCA-TAATCTCAC-AAATAGCACATTTAGTTTT</genome_strand>
        <mrna_strand>ATCCATTCCATGTTTTGCGAATTAACAAGATGTTTTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGGCTTCCTTACATCTGCTTAGGGAATTGGAAAGTGGGCATTATTCTCACAAAATAGCACATTTAGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572357" ref_strand="+" ref_description="SGN-E572357 [31498]">
      <seq>ttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcaggtttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtgtgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagtatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaagtggcatattctcacgaatagcacatttagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98401" stop="96697"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98101" g_stop="97717" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="468" r_length="83" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="96997" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="575" r_length="107" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E572357" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98101" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="96997"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAG-ATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTT</genome_strand>
        <mrna_strand>TTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGTTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTGTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGTATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAGTGGCATATTCTCACGAATAGCACATTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211854" ref_strand="+" ref_description="SGN-E211854 [cLEC-66-J6]">
      <seq>aagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggncaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagtgaatttgagtggcataatctcacaaatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98511" stop="96708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98211" g_stop="97717" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="577" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="97008" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="673" r_length="96" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E211854" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98211" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAG</genome_strand>
        <mrna_strand>AAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGNCACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTTGAGTGGCATAATCTCACAAATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558491" ref_strand="+" ref_description="SGN-E558491 [17839]">
      <seq>ttaagccgcagatcaattgcagtgacgccccaatcgaataagccagggggagaagaccctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttgggcagcatggtcgacttgctgcacgtcaaccctggaaggggccttccttacatctgtttaggggaattgaagtggcatattctcacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99570" stop="96709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99270" g_stop="99218" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="557" r_length="503" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="639" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97009" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="737" r_length="98" r_score="0.874"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E558491" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99270" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATA-GCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGA-CCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAA-CCTGGAA-GGGCCTTCCTTACATCTGCTTA-GTGAATTGAAGTGGCATAATCTCACAAATA</genome_strand>
        <mrna_strand>TTAAGCCGCAGATCAATTGCAGTGACGCCCCAATCGAATAAGCCAGGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGGCAGCATGGTCGACTTGCTGCACGTCAACCCTGGAAGGGGCCTTCCTTACATCTGTTTAGGGGAATTGAAGTGGCATATTCTCACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561777" ref_strand="+" ref_description="SGN-E561777 [19096]">
      <seq>tcggcacgaggatcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggnttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcaggggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagggaattgaaagtggcatattctcacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114159" stop="96711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99269" g_stop="99218" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.827"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="557" r_length="504" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="639" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97011" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="733" r_length="94" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E561777" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99269" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGC-CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGG-TTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCA-GGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTG-AAGTGGCATAATCTCACAAA</genome_strand>
        <mrna_strand>TCGGCACGAGGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGNTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGGAATTGAAAGTGGCATATTCTCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453930" ref_strand="+" ref_description="SGN-E453930 [cSTS-21-J13]">
      <seq>attgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaccatggtcgacttgctgcacgtcaacctgggaaggccttccttacatctgcttanggaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99555" stop="96729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99255" g_stop="99218" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="540" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="622" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97029" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="696" r_length="74" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E453930" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99255" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAA</genome_strand>
        <mrna_strand>ATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGC-ACCATGGTCGACTTGCTGCACGTCAACCTGGGAAGGCCTTCCTTACATCTGCTTANGGAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459882" ref_strand="+" ref_description="SGN-E459882 [cPRO-29-C6]">
      <seq>atcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaaatgctagcttctttggcaccatggtcgacttgctgcacgtcaacctggaagggccttcttacatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99259" g_stop="99218" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="544" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="626" r_length="82" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="627" r_stop="688" r_length="62" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E459882" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99259" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCT</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAAATGCTAG..............................................................................................................................CTTCTTTGGCACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTT-CTTACATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E570399" ref_strand="+" ref_description="SGN-E570399 [14977]">
      <seq>atcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttngcaattggtcacggttcccttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99259" g_stop="99218" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="548" r_length="506" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="693" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E570399" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E570399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99259" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTT-GCAATTGGTCA-GGTT--CTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCT</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTNGCAATTGGTCACGGTTCCCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462200" ref_strand="+" ref_description="SGN-E462200 [cPRO-10-N20]">
      <seq>caattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaagggtttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcatctgggagaatgagaatgtctcaagtgaagcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcacggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgccaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatccttgtcagcagaaagtggggattctccaagttcagccggactgattatctgagatacacgtcagataaccgtattctcccagatggtgtgaatgctaatcttcttgtgcaccatggtcgacttgctgcacgtcaacctaggagggccttccttacatctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97041" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="687" r_length="63" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E462200" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E462200" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCT</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGGTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCATCTGGGAGAATGAGAATGTCTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCACGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCCAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCCTTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCTCCAAGTTCAGCCGGACTGATTATCTGAGATACACGTCAGATAACCGTATTCTCCCAGATGGTGTGAATGCTAAT..............................................................................................................................CTTCTTGTGCACCATGGTCGACTTGCTGCACGTCAACCTAGGAGGGCCTTCCTTACATCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464964" ref_strand="+" ref_description="SGN-E464964 [cPRO-19-N21]">
      <seq>cgcagatcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaagttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctgggagggccttccttacatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="96742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97042" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="693" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E464964" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464964" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAAGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGGAGGGCCTTCCTTACATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429291" ref_strand="+" ref_description="SGN-E429291 [STM-51-H4]">
      <seq>caattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaagagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatacactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgcgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97053" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="675" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E429291" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTC</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAAGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATACACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGCGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404395" ref_strand="+" ref_description="SGN-E404395 [PPC-13-H20]">
      <seq>ttacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99548" stop="96754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99248" g_stop="99218" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.871"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="533" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="615" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97054" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="665" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E404395" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99248" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTT</genome_strand>
        <mrna_strand>TTACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557728" ref_strand="+" ref_description="SGN-E557728 [16572]">
      <seq>gtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcaggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttcttggcaaacatggtcgacttgctgcacgtcaaacctgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98372" stop="96761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98072" g_stop="97717" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="355" r_length="355" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="437" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.89"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97103" g_stop="97060" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="482" r_length="45" r_score="0.886"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E557728" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557728" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98072" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTC-AACCTGGAAG</genome_strand>
        <mrna_strand>GTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCA-GGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCTTGGCAAACATGGTCGACTTGCTGCACGTCAAACCTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211620" ref_strand="+" ref_description="SGN-E211620 [cLEC-67-B17]">
      <seq>taagccgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99569" stop="96763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99269" g_stop="99218" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="554" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="636" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97063" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="677" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E211620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99269" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGG</genome_strand>
        <mrna_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322694" ref_strand="+" ref_description="SGN-E322694 [cTOB-26-J17]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatancagtcagaagaacgtattctcccagatggtgtgaatgcaaagcttcttggncaacatggtcgacttgctgcacgtcaacctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="96763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97063" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="671" r_length="41" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E322694" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322694" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATANCAGTCAGAAGAACGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGNCAACATGGTCGACTTGCTGCACGTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212122" ref_strand="+" ref_description="SGN-E212122 [cLEC-75-F11]">
      <seq>tcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttctttggcaacatggtcgacttgctgcacgtcaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99558" stop="96764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="543" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="625" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97064" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="665" r_length="40" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E212122" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTG</genome_strand>
        <mrna_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTTGGCAACATGGTCGACTTGCTGCACGTCAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328486" ref_strand="+" ref_description="SGN-E328486 [cTOC-23-C19]">
      <seq>tttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99538" stop="96764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99238" g_stop="99218" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="523" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="605" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97064" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="645" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E328486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99238" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTG</genome_strand>
        <mrna_strand>TTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG..............................................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460386" ref_strand="+" ref_description="SGN-E460386 [cPRO-30-L12]">
      <seq>caattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctngaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagctttctggcaacatggtcgacttgctgcacgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97069" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="658" r_length="34" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E460386" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E460386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCA</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTNGAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTTCTGGCAA-CATGGTCGACTTGCTGCACGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E560984" ref_strand="+" ref_description="SGN-E560984 [20723]">
      <seq>atcaattgcagtgacgccccaatcgaattaaccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcaggggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggntgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtatttctcccagatggtgtgaaatgcttaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99259" g_stop="99218" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.881"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="547" r_length="504" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97236" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="623" r_length="76" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97235" i_stop="97104" i_length="132">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97097" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="630" r_length="7" r_score="0.571"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E560984" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E560984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99259" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97236"/>
          <exon e_start="97103" e_stop="97097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCATTTGAA-TAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCA-GGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGG-TGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTA-TTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTG</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATCGAATTAACCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGNTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTTCTCCCAGATGGTGTGAA-....................................................................................................................................ATGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579983" ref_strand="+" ref_description="SGN-E579983 [87117]">
      <seq>attgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagtttcagccgtactgattatctggacaatacaagtcaggagaaccgtattctcccagatggtgtgaatgctgaggcttcttgggcaaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99555" stop="96912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99255" g_stop="99218" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="540" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="541" r_stop="627" r_length="87" r_score="0.829"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.81"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97097" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="628" r_stop="634" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E579983" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99255" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAG-TTCAGCCGAACTGATTATCT-GA-GATACAAGTCA-GAGAACCGTATTCTCCCAGATGGTGTGAATGC-AAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCTTG</genome_strand>
        <mrna_strand>ATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTTCAGCCGTACTGATTATCTGGACAATACAAGTCAGGAGAACCGTATTCTCCCAGATGGTGTGAATGCTGAGG..............................................................................................................................CTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558458" ref_strand="+" ref_description="SGN-E558458 [17802]">
      <seq>gtgacgccccaatcgaatagccatggggagaagactgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcaggggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgataactccaaactggtatgaggggagcttttggtaagccacaggggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctgggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgctaagcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99549" stop="96927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99249" g_stop="99218" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="535" r_length="503" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="617" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97103" g_stop="97099" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="622" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E558458" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99249" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
          <exon e_start="97103" e_stop="97099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCA-GGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCA-GGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCT-GGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAGGTTTGTCTGTTCATATCCTTCTTTTTAAACTAATATTTTTGCTTTGCTATTCATGTATCTGGTCGCCAGTAGCGATTTGCACTTTTTGGTTGTGACAACGTATTATGTGATCTTTTGCTTTTGCAGCTTCT</genome_strand>
        <mrna_strand>GTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATA-ACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCTAAG..............................................................................................................................CTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E603837" ref_strand="+" ref_description="SGN-E603837 [67025]">
      <seq>tacagtgacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcactaagttcagccgtactgattatctgaaatacaacgtcagagaaccgtattctccccaggatggtgtgaatgctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99553" stop="96930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99253" g_stop="99218" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="538" r_length="502" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97230" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="623" r_length="85" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E603837" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E603837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99253" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAA-GTCAGAGAACCGTATTCT-CCCA-GATGGTGTGAATGCAAAG</genome_strand>
        <mrna_strand>TACAGTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAACGTCAGAGAACCGTATTCTCCCCAGGATGGTGTGAATGCTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413320" ref_strand="+" ref_description="SGN-E413320 [STM-17-P13]">
      <seq>agatcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtatgaatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99561" stop="96931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99261" g_stop="99218" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="546" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97231" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="627" r_length="81" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E413320" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E413320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99261" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAA</genome_strand>
        <mrna_strand>AGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTATGAATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288932" ref_strand="+" ref_description="SGN-E288932 [cLES-17-C20]">
      <seq>acctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcagagaaccgtattctcccagatggtgtgaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98517" stop="96933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="97717" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97233" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="580" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E288932" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="97717"/>
          <exon e_start="97311" e_stop="97233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCA</genome_strand>
        <mrna_strand>ACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566210" ref_strand="+" ref_description="SGN-E566210 [4649]">
      <seq>ccgcagatcaattgcagtgacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggntgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaacgtggggattcactaagttcagccgtactgattatctgaaatacaaggtcagagaaccgtattctcgcagatggtgtgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99565" stop="96936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99265" g_stop="99218" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="552" r_length="504" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.90"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97236" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="629" r_length="77" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E566210" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99265" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGG-TGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAA-GTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAA-GTCAGAGAACCGTATTCTCCCAGATGGTGTGAAT</genome_strand>
        <mrna_strand>CCGCAGATCAATTGCAGTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGNTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAACGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGGTCAGAGAACCGTATTCTCGCAGATGGTGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448738" ref_strand="+" ref_description="SGN-E448738 [cSTS-4-G8]">
      <seq>atcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaatacaagtcagagaaccgtattctcccagatggtgtgaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99559" stop="96934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99259" g_stop="99218" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="544" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97236" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="620" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E448738" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99259" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAAT</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571693" ref_strand="+" ref_description="SGN-E571693 [15757]">
      <seq>caattgcagagacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcaggggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagccgaaagtggggattcactaagttcaggccgtactgagttatctgagaatacaaagtcagaagaaccgtattctcccagatggtgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="543" r_length="503" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97237" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="623" r_length="80" r_score="0.840"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E571693" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCA-GGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCA-GCCGAACTGA-TTATCTGAG-ATAC-AAGTCAG-AGAACCGTATTCTCCCAGATGGTGTGAA</genome_strand>
        <mrna_strand>CAATTGCAGAGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCCGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGGCCGTACTGAGTTATCTGAGAATACAAAGTCAGAAGAACCGTATTCTCCCAGATGGTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612176" ref_strand="+" ref_description="SGN-E612176 [61936]">
      <seq>gaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaaagatggaaacagtaaccatgcccaaggaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagccgaaaggtggggggattcactaaagttcagccggtactgattaatcttgaaatacaagtcagagaaccgtattctccacagattggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99535" stop="96940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99235" g_stop="99218" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="521" r_length="503" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97316" i_length="401">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.72"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97315" g_stop="97240" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="603" r_length="82" r_score="0.776"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E612176" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E612176" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99235" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97315" e_stop="97240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGC-AAAGATGGAAACAGTAACCATGCCCAA-GAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCAC-CAAGTTCAGCC-GAACTGATT-ATC-TGAGATACAAGTCAGAGAACCGTATTCTCC-CAGA-TGGTGT</genome_strand>
        <mrna_strand>GAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAAGATGGAAACAGTAACCATGCCCAAGGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCCGAAAG-G.................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGGGATTCACTAAAGTTCAGCCGGTACTGATTAATCTTGAAATACAAGTCAGAGAACCGTATTCTCCACAGATTGGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572844" ref_strand="+" ref_description="SGN-E572844 [32062]">
      <seq>caattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaacaagttcagccgtactgattatctgaaatacaagtcagagaaccgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99557" stop="96956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99257" g_stop="99218" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97256" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="598" r_length="56" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E572844" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99257" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTA</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCAACAAGTTCAGCCGTACTGATTATCTGAAATACAAGTCAGAGAACCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E571392" ref_strand="+" ref_description="SGN-E571392 [13146]">
      <seq>ccgcagatcaattgcagtgacgccccaatcgattagccatggtggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgccgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaataccagtcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99565" stop="96964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99265" g_stop="99218" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.896"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="552" r_length="503" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97264" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="600" r_length="48" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E571392" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E571392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99265" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGG-GGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTG-CGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGA</genome_strand>
        <mrna_strand>CCGCAGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGTGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATACCAGTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338555" ref_strand="+" ref_description="SGN-E338555 [cTOE-15-I11]">
      <seq>gaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="96965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="505" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97311" g_stop="97265" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="552" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E338555" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAG</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338408" ref_strand="+" ref_description="SGN-E338408 [cTOE-15-K9]">
      <seq>cgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagttttctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaactgattatctgagatacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="96967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97267" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="594" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E338408" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTTCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469486" ref_strand="+" ref_description="SGN-E469486 [cSTB-11-N20]">
      <seq>aatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgtactgattatctgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99539" stop="96973"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99239" g_stop="99218" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.864"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="524" r_length="502" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97273" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="563" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E469486" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E469486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99239" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATA</genome_strand>
        <mrna_strand>AATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGTACTGATTATCTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311386" ref_strand="+" ref_description="SGN-E311386 [cLEZ-18-H8]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcaccaagttcagccgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="96987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97311" g_stop="97287" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="573" r_length="25" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E311386" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
          <exon e_start="97311" e_stop="97287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATCTTATGCTACTGATTTGTTTGAGAACTTTGTACTTTTTTCCATTAAAGGATTATGCTGTTGTGTAAAAAGGGCTCTATTTCATCTAATAGTTATTTAGTTTGGAGAGATTCATTCTAAAAAAACACCCTACAGTTAATCACACAATTTTCTTCCTTTCAATGCCAAAAGTCGTCTTATTCCACTACGGAAGTATGAACTCTGTGGGCTTGTTTTCCATCTAAGACTTGTAAAGTTTCATGATATCTTTGTTTATTGTTGTCTCATTAAGCCATTTAGCCTAACCATTGAGGCGATGGTTGATCATGTATAATTTTGGTTTTTTAGACAGTTAGATACTTGTCCTTGAATCTCACATGTGCTACTTTGATTCAGGGGATTCACCAAGTTCAGCCGAACT</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E559075" ref_strand="+" ref_description="SGN-E559075 [18514]">
      <seq>cgcagatcaattgcagtgacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgacaaaagatcattgtcagccgaaagtggggattcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E559075" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGACAAAAGATCATTGTCAGCCGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313548" ref_strand="+" ref_description="SGN-E313548 [cTOA-12-M20]">
      <seq>gcagatcatttgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaagttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaaaggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaagctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtggggattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E313548" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>GCAGATCATTTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAAGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAAGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAAGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336786" ref_strand="+" ref_description="SGN-E336786 [cTOE-5-M23]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E336786" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E557205" ref_strand="+" ref_description="SGN-E557205 [20934]">
      <seq>gcagtgacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggtttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgaaagatggaaacagtaaccatgcccaagaggctctgcgcggtgccaagtccaagtttcttggacgacaaaagatcattgtcagcgaaagtggggattcataag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99552" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99252" g_stop="99218" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="534" r_length="499" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E557205" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E557205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99252" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>GCAGTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGG-TTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTG-AAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCGGTGCCAAGTCCAAGTTTCTTGGACGACAAAAGATCATTGTCAGC-GAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447262" ref_strand="+" ref_description="SGN-E447262 [cSTA-25-D4]">
      <seq>agagaattagccatggggagaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagcttttggtaagccacagggagtctgtgcccgtgttgctattggtcaggttttgctctcagttcgctgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagttccctggccgacaaaagatcattgtcagcagaaagtgggggttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99535" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99239" g_stop="99218" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="0.773"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="524" r_length="502" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E447262" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E447262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99239" e_stop="99218"/>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>AGAGAATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCCAAAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTTGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTTTGCTCTCAGTTCGCTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTCCCTGGCCGACAAAAGATCATTGTCAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212420" ref_strand="+" ref_description="SGN-E212420 [cLEC-74-N5]">
      <seq>gaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagcaggaagtgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97717" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="505" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E212420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272412" ref_strand="+" ref_description="SGN-E272412 [cLEM-19-M20]">
      <seq>aaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98469" stop="97425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98169" g_stop="97725" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E272412" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98169" e_stop="97725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGC</genome_strand>
        <mrna_strand>AAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E319765" ref_strand="+" ref_description="SGN-E319765 [cTOB-12-M20]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctngcgccgtgccaagttcaagtttcctgacgtcaaaagatcattgtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="97426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97726" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="539" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E319765" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCT-GCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTNGCGCCGTGCCAAGTTCAAGTTTCCT-GACGTCAAAAGATCATTGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324613" ref_strand="+" ref_description="SGN-E324613 [cTOC-9-K3]">
      <seq>gaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaagctctgcgccgtgccaagttcaagtttcctggacgtcaaaagatcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97727" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="495" r_length="492" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E324613" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCA</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAAGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328560" ref_strand="+" ref_description="SGN-E328560 [cTOC-23-O8]">
      <seq>taacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaagctcttcgccgtgctaagtttaagtttcctggccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97743" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="510" r_length="476" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E328560" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGT</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAAGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419139" ref_strand="+" ref_description="SGN-E419139 [STM-29-E11]">
      <seq>cgcagatcaattgcagtgacgccacaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctggcaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="97455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97755" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="511" r_length="464" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E419139" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E419139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAG</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCACAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGGCAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456947" ref_strand="+" ref_description="SGN-E456947 [cPRO-1-M3]">
      <seq>cagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcaaggtggttgtgctcgtgttgcaattggtcaaggtcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaagctctgcgccgtgccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99551" stop="97461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99251" g_stop="99218" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97761" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="492" r_length="458" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E456947" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E456947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99251" e_stop="99218"/>
          <exon e_start="98218" e_stop="97761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAG</genome_strand>
        <mrna_strand>CAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAAGGTGGTTGTGCTCGTGTTGCAATTGGTCAAGGTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAAGCTCTGCGCCGTGCCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577255" ref_strand="+" ref_description="SGN-E577255 [34127]">
      <seq>aggcccaatcgaatagccatggggagaagacctgcaagaatgttattcgtcaggattaagagacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagacctccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99544" stop="97465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99245" g_stop="99218" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97765" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="487" r_length="459" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E577255" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99245" e_stop="99218"/>
          <exon e_start="98218" e_stop="97765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAG-ATGTTA-TCGTCAG-ATTAAGA-ACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGA-CTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGC</genome_strand>
        <mrna_strand>AGGCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGAATGTTATTCGTCAGGATTAAGAGACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACCTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567825" ref_strand="+" ref_description="SGN-E567825 [12011]">
      <seq>gaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaaggtcagggttcatccattccatgttttgggaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccacagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagagctctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98333" stop="97473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98033" g_stop="97773" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E567825" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>261</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E567825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98033" e_stop="97773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTG</genome_strand>
        <mrna_strand>GAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAA-GGTCAGGGTTCATCCATTCCATGTTTTGGGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCACAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGA-GCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283864" ref_strand="+" ref_description="SGN-E283864 [cLER-13-I15]">
      <seq>aacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcatggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcgggtcggtgcaaagatggcaatgctcaccatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97783" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="469" r_length="436" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E283864" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCA</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCATGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGGTCGGTGCAAAGATGGCAATGCTCACCATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291365" ref_strand="+" ref_description="SGN-E291365 [cLET-2-J19]">
      <seq>aagccgccgcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccatatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97783" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="481" r_length="436" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E291365" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCA</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCATATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311628" ref_strand="+" ref_description="SGN-E311628 [cLEZ-9-E10]">
      <seq>aattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99556" stop="97484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99256" g_stop="99218" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97784" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="474" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E311628" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99256" e_stop="99218"/>
          <exon e_start="98218" e_stop="97784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCC</genome_strand>
        <mrna_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295038" ref_strand="+" ref_description="SGN-E295038 [cLET-40-I19]">
      <seq>gccgccgcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcaaggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaagttcttctctcggttcggtgcaaagatggcaatgctaaccatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97784" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="478" r_length="435" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E295038" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCC</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAAGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAAGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E267178" ref_strand="+" ref_description="SGN-E267178 [cLEI-4-M15]">
      <seq>agaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97784" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="455" r_length="435" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E267178" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCC</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372946" ref_strand="+" ref_description="SGN-E372946 [TUS-32-N13]">
      <seq>ccgcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97784" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="474" r_length="435" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E372946" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97784"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCC</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E464963" ref_strand="+" ref_description="SGN-E464963 [cPRO-19-N19]">
      <seq>tgcagatcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="97485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.91"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97785" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="481" r_length="434" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E464963" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E464963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</genome_strand>
        <mrna_strand>TGCAGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311251" ref_strand="+" ref_description="SGN-E311251 [cLEZ-16-J21]">
      <seq>aattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacacgtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgagtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcacggtcttctatctgttcgctgcaaagatggaaacagtgaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99556" stop="97485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99256" g_stop="99218" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97785" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="473" r_length="434" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E311251" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99256" e_stop="99218"/>
          <exon e_start="98218" e_stop="97785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</genome_strand>
        <mrna_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACACGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGAGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCACGGTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTGACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278828" ref_strand="+" ref_description="SGN-E278828 [cLER-2-N23]">
      <seq>tgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99553" stop="97485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99253" g_stop="99218" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97785" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="470" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E278828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99253" e_stop="99218"/>
          <exon e_start="98218" e_stop="97785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</genome_strand>
        <mrna_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444585" ref_strand="+" ref_description="SGN-E444585 [cSTA-43-B21]">
      <seq>ccgcaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99543" stop="97485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99243" g_stop="99218" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.885"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97785" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="460" r_length="434" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E444585" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99243" e_stop="99218"/>
          <exon e_start="98218" e_stop="97785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</genome_strand>
        <mrna_strand>CCGCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414589" ref_strand="+" ref_description="SGN-E414589 [STM-19-F8]">
      <seq>cagagcgattgcagagaattagccatggggagaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagcttttggtaagcccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcagttcgctgcaaagatggcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99535" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99251" g_stop="99218" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.647"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97796" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="458" r_length="424" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E414589" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E414589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99251" e_stop="99218"/>
          <exon e_start="98218" e_stop="97796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCC-CAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACA</genome_strand>
        <mrna_strand>CAGAGCGATTGCAGAGAATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCCAAAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTTGGTAAGCCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCAGTTCGCTGCAAAGATGGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321160" ref_strand="+" ref_description="SGN-E321160 [cTOB-13-J13]">
      <seq>gaggatcaattgcagtgaccgcccccatttgaatagccatggggagaagaacctgccaagaatgttatcgtcagaattaagaaaaagcccttaccccaaaatcaaagttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaaaggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgcctggagctgatagactccaaactggtatgaggggagcttttggtaatcccccaggtgtttgtgctcgtgttgcaattggtcaagttcttctatctgttcgctgcaaagatggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99560" stop="97498"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.870"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.87"/>
            <acceptor a_prob="0.988" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97798" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="476" r_length="428" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321160" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGA-CG-CCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGG-ACCTG-CAAG-ATGTTATCGTCAG-ATTAAGAACAAG-CCTTACCC-AAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTG-CTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAA</genome_strand>
        <mrna_strand>GAGGATCAATTGCAGTGACCGCCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCTGCCAAGAATGTTATCGTCAGAATTAAGAAAAAGCCCTTACCCCAAAATCAAAGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAAGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAATCCCCCAGGTGTTTGTGCTCGTGTTGCAATTGGTCAAGTTCTTCTATCTGTTCGCTGCAAAGATGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265927" ref_strand="+" ref_description="SGN-E265927 [cLEI-6-E9]">
      <seq>tgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99553" stop="97509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99253" g_stop="99218" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97809" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="446" r_length="410" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E265927" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99253" e_stop="99218"/>
          <exon e_start="98218" e_stop="97809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGC</genome_strand>
        <mrna_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309340" ref_strand="+" ref_description="SGN-E309340 [cLEY-22-C13]">
      <seq>tcaccgatgggtcgaaaacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97819" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="416" r_length="400" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E309340" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309340" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATC</genome_strand>
        <mrna_strand>AACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262089" ref_strand="+" ref_description="SGN-E262089 [cLEG-58-I9]">
      <seq>ccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcatgtatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98483" stop="97520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98183" g_stop="97820" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E262089" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262089" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98183" e_stop="97820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCA-GGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTAT</genome_strand>
        <mrna_strand>CCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCATGTATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266490" ref_strand="+" ref_description="SGN-E266490 [cLEI-5-M17]">
      <seq>tgcagtgacgccccatttgaagggccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggttatccccagggtgtttgtgctcgtgttgcaattggtcaagttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99553" stop="97522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99253" g_stop="99218" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97822" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="433" r_length="397" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E266490" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99253" e_stop="99218"/>
          <exon e_start="98218" e_stop="97822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCT</genome_strand>
        <mrna_strand>TGCAGTGACGCCCCATTTGAAGGGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTTATCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAAGTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453046" ref_strand="+" ref_description="SGN-E453046 [cSTS-18-P9]">
      <seq>ccgcagagcaattgcagagaattagccatggggagaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagcttttggtaagccacagggagtctgtgcccgtgttgctattggttcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99535" stop="97529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99229" g_stop="99218" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="37" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97829" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="428" r_length="391" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E453046" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99229" e_stop="99218"/>
          <exon e_start="98218" e_stop="97829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGG-TCAGG</genome_strand>
        <mrna_strand>CCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCCAAAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTTGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339814" ref_strand="+" ref_description="SGN-E339814 [cTOE-16-P22]">
      <seq>agtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99550" stop="97532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99250" g_stop="99218" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97832" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="420" r_length="387" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E339814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99250" e_stop="99218"/>
          <exon e_start="98218" e_stop="97832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTC</genome_strand>
        <mrna_strand>AGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294752" ref_strand="+" ref_description="SGN-E294752 [cLET-17-M19]">
      <seq>acctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98517" stop="97532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98217" g_stop="97832" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E294752" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98217" e_stop="97832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTC</genome_strand>
        <mrna_strand>ACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294753" ref_strand="+" ref_description="SGN-E294753 [cLET-17-M19](-)">
      <seq>gaccaatagcaacacgggcacagactccctgtggcttaccgaaagctcctctcataccagtttggagcctatcagccccagcacatgacaacatcttgttaattcgcaaaacatggaagggatggaccctaaccctgaggtggaaagcatcctttcctgcagacttggtcatgtacttgttgcaagcaatacgagcagcttcaagtgcctcacttgaaacattctccttctcccaactgaccaagtgcacacagaaaggaaattcatcaactccctttttcttcatacccacatcatagatcctgatctttggatctgggacaccacggcaaaaccgtgattttggataaggcttgttcttaatctggcggtaacaccttgcaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97532" stop="98517"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97832" g_stop="98217" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E294753" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97832" e_stop="98217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCAATTGCAACACGAGCACAAACACCCTGGGGCTTACCAAAAGCTCCCCTCATACCAGTTTGGAGTCTATCAGCTCCAGCACACGACAACATCTTGTTAATTCGCAAAACATGGAATGGATGAACCCTGACCCTTAGGTGAAAAGCATCTTTCCCGGCAGACTTGGTCATGTACTTGTTGCAAGCAATACGGGCAGCTTCAAGTGCCTCACTTGAGACATTCTCCTTCTCCCAACTGACCAAATGCACACAGAAAGGGAACTCATCAACTCCCTTTTTCTTCATGCCCACATCATAAATCCTGATCTTTGGATCAGGGACACCACGGCAAAACCTTGATTTTGGGTAAGGCTTGTTCTTAATCTGACGATAACATCTTGCAGGT</genome_strand>
        <mrna_strand>GACCAATAGCAACACGGGCACAGACTCCCTGTGGCTTACCGAAAGCTCCTCTCATACCAGTTTGGAGCCTATCAGCCCCAGCACATGACAACATCTTGTTAATTCGCAAAACATGGAAGGGATGGACCCTAACCCTGAGGTGGAAAGCATCCTTTCCTGCAGACTTGGTCATGTACTTGTTGCAAGCAATACGAGCAGCTTCAAGTGCCTCACTTGAAACATTCTCCTTCTCCCAACTGACCAAGTGCACACAGAAAGGAAATTCATCAACTCCCTTTTTCTTCATACCCACATCATAGATCCTGATCTTTGGATCTGGGACACCACGGCAAAACCGTGATTTTGGATAAGGCTTGTTCTTAATCTGGCGGTAACACCTTGCAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324429" ref_strand="+" ref_description="SGN-E324429 [cTOC-6-E17]">
      <seq>ctaacaattccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcaaggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98525" stop="97533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97833" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="421" r_length="386" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E324429" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGT</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAAGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361955" ref_strand="+" ref_description="SGN-E361955 [cLPP-11-C14]">
      <seq>gaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaaatacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97833" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="389" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E361955" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGT</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAATACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486037" ref_strand="+" ref_description="SGN-E486037 [cSTE-20-P7]">
      <seq>ctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcaaggtgtttgtgctcgtgttgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98515" stop="97535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98215" g_stop="97835" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E486037" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98215" e_stop="97835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTG</genome_strand>
        <mrna_strand>CTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAAGGTGTTTGTGCTCGTGTTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248510" ref_strand="+" ref_description="SGN-E248510 [cLEF-59-D19]">
      <seq>tgcaagaagttatcgtcagaattaagaaaaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagaatcaggatttatgaatgtgggcattgaaagaaagggagttgatgaattccctttctgtgtgcatttggtcagttgggagaaagagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcctcaaggtgtttgtgctcgtgttgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98514" stop="97535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98214" g_stop="97835" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E248510" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98214" e_stop="97835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAGATGTTATCGTCAGA-TTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAG-ATCAGGATTTATG-ATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTG</genome_strand>
        <mrna_strand>TGCAAGAAGTTATCGTCAGAATTAAGAAAAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGAATCAGGATTTATGAATGTGGGCATTGAAAGAAAGGGAGTTGATGAATTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAAGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCTCAAGGTGTTTGTGCTCGTGTTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274961" ref_strand="+" ref_description="SGN-E274961 [cLEN-16-A11]">
      <seq>cgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcatgatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaatggtcagggttcatccattccatgttttgcgaattaacaagatgttgccgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtgtgtgctcgtgttgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99564" stop="97536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99264" g_stop="99218" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97836" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="430" r_length="383" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E274961" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99264" e_stop="99218"/>
          <exon e_start="98218" e_stop="97836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATT</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCATGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAATGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGCCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTGTGTGCTCGTGTTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336895" ref_strand="+" ref_description="SGN-E336895 [cTOE-5-L1]">
      <seq>aatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99534" stop="97562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99234" g_stop="99218" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97862" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="374" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E336895" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336895" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99234" e_stop="99218"/>
          <exon e_start="98218" e_stop="97862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCC</genome_strand>
        <mrna_strand>AATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566396" ref_strand="+" ref_description="SGN-E566396 [4835]">
      <seq>ccttacccaaaatcacggttttgccgtggtgtcccagatccaaagattaggatttacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccaactcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagcttttggtaagccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98483" stop="97564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98183" g_stop="97862" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="322" r_length="322" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E566396" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>322</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98183" e_stop="97862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCC</genome_strand>
        <mrna_strand>CCTTACCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATTAGGATTTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCAACTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTTGGTAAGCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E472024" ref_strand="+" ref_description="SGN-E472024 [cSTB-27-O7]">
      <seq>agatcaattgcagtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99561" stop="97569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99261" g_stop="99218" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97869" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="394" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E472024" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99261" e_stop="99218"/>
          <exon e_start="98218" e_stop="97869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGT</genome_strand>
        <mrna_strand>AGATCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470244" ref_strand="+" ref_description="SGN-E470244 [cSTB-17-M18]">
      <seq>agtgacgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99550" stop="97569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99250" g_stop="99218" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97869" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="383" r_length="350" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E470244" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E470244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99250" e_stop="99218"/>
          <exon e_start="98218" e_stop="97869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGT</genome_strand>
        <mrna_strand>AGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258840" ref_strand="+" ref_description="SGN-E258840 [cLEG-41-C19]">
      <seq>gcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaaaggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99563" stop="97572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99263" g_stop="99218" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97872" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="393" r_length="347" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E258840" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99263" e_stop="99218"/>
          <exon e_start="98218" e_stop="97872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAAGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444134" ref_strand="+" ref_description="SGN-E444134 [cSTA-41-D2]">
      <seq>gattgcagtgacgccacaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99555" stop="97572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99256" g_stop="99218" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97872" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="386" r_length="347" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E444134" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99256" e_stop="99218"/>
          <exon e_start="98218" e_stop="97872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</genome_strand>
        <mrna_strand>GATTGCAGTGACGCCACAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479803" ref_strand="+" ref_description="SGN-E479803 [cSTD-11-M8]">
      <seq>gagaattagccatggggagaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99535" stop="97572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99237" g_stop="99218" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.800"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97872" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="367" r_length="346" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E479803" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479803" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99237" e_stop="99218"/>
          <exon e_start="98218" e_stop="97872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAA-TAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</genome_strand>
        <mrna_strand>GAGAATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCC-AAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473437" ref_strand="+" ref_description="SGN-E473437 [cSTB-32-I20]">
      <seq>gcgattgcagagaataagccatggggagaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97872" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="377" r_length="347" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E473437" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTT</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCCAAAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566228" ref_strand="+" ref_description="SGN-E566228 [4667]">
      <seq>ccgcagatcaattgcagtgacgccccaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggtttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaaagtacatgaccaagtctgctgggaaggatgctttcacctaagggtcaggattcatccattccatgtatttgcgaattcaacacgatgtagtcgatgtgctggagctgatagactccaaactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99565" stop="97586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99265" g_stop="99218" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97886" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="385" r_length="337" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E566228" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99265" e_stop="99218"/>
          <exon e_start="98218" e_stop="97886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGG-TTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAAC-AAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGT-TTTGCGAATT-AACAAGATGTTGTCG-TGTGCTGGAGCTGATAGACTCCAAACTGGTA</genome_strand>
        <mrna_strand>CCGCAGATCAATTGCAGTGACGCCCCAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAAGTACATGACCAAGTCTGCTGGGAAGGATGC-TTTCACCTAAGGGTCAGGATTCATCCATTCCATGTATTTGCGAATTCAACACGATGTAGTCGATGTGCTGGAGCTGATAGACTCCAAACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284939" ref_strand="+" ref_description="SGN-E284939 [cLER-19-L16]">
      <seq>cccatttgaatagccatggggagaagacctgcatgatgttatcgtcagattaagaacatgccttacccataatcaaggttttgccgtggtgttcctgatccaaagatcaggatctatgatgtgggcatgaagaataagggagttgatgagttccctttctgtgtgcatttggtcagttgctagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaggtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcaggtttcatccattccatgttctgcgaattaacaagatgttgccgtgtgctggagctgatagactacaaactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97886" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="358" r_length="333" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E284939" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTA</genome_strand>
        <mrna_strand>GACCTGCATGATGTTATCGTCAGATTAAGAACATGCCTTACCCATAATCAAGGTTTTGCCGTGGTGTTCCTGATCCAAAGATCAGGATCTATGATGTGGGCATGAAGAATAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGCTAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAGGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGTTTCATCCATTCCATGTTCTGCGAATTAACAAGATGTTGCCGTGTGCTGGAGCTGATAGACTACAAACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E572815" ref_strand="+" ref_description="SGN-E572815 [32028]">
      <seq>gccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggattcatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgctcctgcgacttaacaagatgtcgccgtgtgctggagctgatagactccaaactggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98484" stop="97586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98184" g_stop="97886" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E572815" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E572815" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98184" e_stop="97886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATG-TTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTA</genome_strand>
        <mrna_strand>GCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTCATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGCTCCTGCGACTTAACAAGATGTCGCCGTGTGCTGGAGCTGATAGACTCCAAACTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311035" ref_strand="+" ref_description="SGN-E311035 [cLEZ-17-J5]">
      <seq>cttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcatcaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98482" stop="97591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98182" g_stop="97891" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E311035" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98182" e_stop="97891"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAAC</genome_strand>
        <mrna_strand>CTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCATCAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245856" ref_strand="+" ref_description="SGN-E245856 [cLEF-51-M15]">
      <seq>taagccgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99569" stop="97602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99269" g_stop="99218" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97902" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="369" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E245856" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99269" e_stop="99218"/>
          <exon e_start="98218" e_stop="97902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGAT</genome_strand>
        <mrna_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E404909" ref_strand="+" ref_description="SGN-E404909 [PPC-15-B22]">
      <seq>aggcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaagttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaaaggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaagagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacataaaggtcaaggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98513" stop="97602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98215" g_stop="97902" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E404909" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E404909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98215" e_stop="97902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGAT</genome_strand>
        <mrna_strand>AGGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAAGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAAGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAAGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACATAAAGGTCAAGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480104" ref_strand="+" ref_description="SGN-E480104 [cSTD-12-N7]">
      <seq>gttttgccgtggtgtcccaaatccaaagattaggatttacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggaaaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattacaagatgttgtcatgtgctngggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98466" stop="97603"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98166" g_stop="97903" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E480104" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E480104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98166" e_stop="97903"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGA</genome_strand>
        <mrna_strand>GTTTTGCCGTGGTGTCCCAAATCCAAAGATTAGGATTTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAAAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATT-ACAAGATGTTGTCATGTGCTNGGGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438824" ref_strand="+" ref_description="SGN-E438824 [cSTA-9-F14]">
      <seq>agaagacctgcaaggtgttaccgccagattaagaacaagccttacccaaaatcacggttttgccgtggtgttccagatccaaagatcaggatctacgatgtgggtatgaagagaaagggagttgatgaatttcctttctgtgtgcacttggttagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgctggaaaggatgctttccacctcagggttagggtccaccccttccatgttttgcgaattaacaagatgttgtcatgtgctgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98522" stop="97607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97907" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="316" r_length="312" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E438824" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>312</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E438824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAG</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTACCCAAAATCACGGTTTTGCCGTGGTGTTCCAGATCCAAAGATCAGGATCTACGATGTGGGTATGAAGAGAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTTAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCACCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561606" ref_strand="+" ref_description="SGN-E561606 [17611]">
      <seq>tcaattgcagtgacgccccaatcgattagccatggggagaagactgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99558" stop="97609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99258" g_stop="99218" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97909" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="350" r_length="309" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E561606" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99258" e_stop="99218"/>
          <exon e_start="98218" e_stop="97909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGG</genome_strand>
        <mrna_strand>TCAATTGCAGTGACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-CTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337552" ref_strand="+" ref_description="SGN-E337552 [cTOE-11-E22]">
      <seq>agccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaaaaaaaagggacttgatgagttccctctctgtgtgcatatggtcagctgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaactgtgccgggaaagatgcttttcacctaaaggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcctgtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98485" stop="97609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98185" g_stop="97909" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E337552" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98185" e_stop="97909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGG</genome_strand>
        <mrna_strand>AGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAAAAAAAGGGACTTGATGAGTTCCCTCTCTGTGTGCATATGGTCAGCTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAACTGTGCCGGGAAAGATGCTTTTCACCTAAAGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCCTGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568719" ref_strand="+" ref_description="SGN-E568719 [13046]">
      <seq>agaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaagcgagaatgtctcaagtgaggcacttgaagctgccgtattgcttggcaacaagtacatgacccagtctgctggggaaggatgcttttcacctaaggggtcagggttcatccattccatgttttgcgaattaacaagatagttgtcgtgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98411" stop="97612"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98111" g_stop="97912" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E568719" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>200</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E568719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98111" e_stop="97912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAG-GAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTT-GCAACAAGTACATGACCAAGTCTGC-CGGGAAAGATGCTTTTCACCTAA-GGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGAT-GTTGTCGTGTGC</genome_strand>
        <mrna_strand>AGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGCGAGAATGTCTCAAGTGAGGCACTTGAAGCTG-CCGTATTGCTTGGCAACAAGTACATGACCCAGTCTGCTGGGGAAGGATGCTTTTCACCTAAGGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATAGTTGTCGTGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341799" ref_strand="+" ref_description="SGN-E341799 [cTOF-9-I10]">
      <seq>aattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcaggggtcattcatttcatgttttgcgaattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99556" stop="97629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99256" g_stop="99218" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97929" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="329" r_length="290" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E341799" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99256" e_stop="99218"/>
          <exon e_start="98218" e_stop="97929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAAC</genome_strand>
        <mrna_strand>AATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGGTCATTCATTTCATGTTTTGCGAATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E474266" ref_strand="+" ref_description="SGN-E474266 [cSTB-36-A7]">
      <seq>acgccccaatcgattagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99546" stop="97659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99246" g_stop="99218" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97959" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="289" r_length="260" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E474266" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E474266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99246" e_stop="99218"/>
          <exon e_start="98218" e_stop="97959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGG</genome_strand>
        <mrna_strand>ACGCCCCAATCGATTAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280248" ref_strand="-" ref_description="SGN-E280248 [cLEL-7-N16](-)">
      <seq>gcacgagccgcagatcaattgcagtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaataaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgatgcacttgaagctgcccgtattgcttgcaacatgtacatgaccaagtctgccgggaaagatgcttttcacctaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99567" stop="97664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99272" g_stop="99218" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="97964" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="310" r_length="255" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E280248" ref_strand="-">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99272" e_stop="99218"/>
          <exon e_start="98218" e_stop="97964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGG</genome_strand>
        <mrna_strand>GCACGAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAATAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGATGCACTTGAAGCTGCCCGTATTGCTTGCAACATGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313684" ref_strand="+" ref_description="SGN-E313684 [cTOA-12-N8]">
      <seq>ccccatttgaatagccatggggagaagacctgcatgatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98523" stop="97667"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98218" g_stop="97967" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="278" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E313684" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98218" e_stop="97967"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAA</genome_strand>
        <mrna_strand>GACCTGCATGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445503" ref_strand="+" ref_description="SGN-E445503 [cSTA-45-B12]">
      <seq>ttgcagtgacgccacaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99554" stop="97763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99254" g_stop="99218" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="98063" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="193" r_length="156" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E445503" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>193</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E445503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99254" e_stop="99218"/>
          <exon e_start="98218" e_stop="98063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGG</genome_strand>
        <mrna_strand>TTGCAGTGACGCCACAATCGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E322947" ref_strand="+" ref_description="SGN-E322947 [cTOB-30-K24]">
      <seq>gtgacgccccatttgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99549" stop="97763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99249" g_stop="99218" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98218" g_stop="98063" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="188" r_length="156" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E322947" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>188</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99249" e_stop="99218"/>
          <exon e_start="98218" e_stop="98063"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCCCCATTTGAATAGCCATGGGGAGAAGTAAGTTGCTTCGCTTAAATCCTTATTTATTAAATTTTATTTGTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAATTTGGTCTTTTACGTATATCTCCATTGACGGATTCATTGGGTTTAGCATTTCTGGTATTTTTATGATTGGATTTGTGTGCCATGTTTGATATATATGAATCATTTGGGAAACTGTGTTAGCTATTTTTTAAAATTGTATTAATGTGAATATTTTTTTTTAAAAAGAGTTTGTTGCGTGAAGGCCTGTATATTTGTTATGTGAATGGGGTGTTTATCTGATATAGAGTAATTTCGTTATATGTTTGTTTGTTTGTGTATTTGATTGTAAAACTAGTTTGTTTAGAATTTGGATTATTGAATTTATTTTGTTGGGGTTTTCTAGCTTTAAAGGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAACTAATACATTAAAAATGAGACCTATCATGGTAAAATGTGTTGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTCTTTGAGGCAGATTTACTTGCGAAGCTAGTTTTTTTGGAAACCCTGAAAGACATAAATCACGGAAAGGATGAATGCTGTCTTTGTAAGAATATTACTTGCTTGGAAAATTGAAGGAATATTTAATAATTTTGTGTCAAAGTAATCCTTTCTTCATGTGTGAGAGATTGGAAGTACTTAATTAAATTACATATGAACTACGTGATGAATAATGACTACATAAGTTGCAAATGATTTATCTAGGATAGTTGTCTGACTAGCCTTGTTCATTACTATTTTGTTGGTAATTGTTAATGTGTATGGAAAAACATATTCGAGTTCCTGCACCACTAGTTGTATCTTGCTTAAGTTCCAGTCATGAGATAGCTAATTTCAGCATATGTTGTATTGTAATGAATTTTTATAGTGCGCTATGAGTCCTTGGCACATTTCCATCTTTGGGCGTTGATGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGG</genome_strand>
        <mrna_strand>GTGACGCCCCATTTGAATAGCCATGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578389" ref_strand="+" ref_description="SGN-E578389 [LE12DC08]">
      <seq>gaaaaacatatatcttattgctatacacttataattatgcaatatacatacattttaattcggttcaattatatgcaaagcaaattttataataatattgcagcgaaataggcagcgaattatacaattgtagttaaataggatagcgaattatacaattgcagcgaaataggccagcgaattatacaatttaggtcagcgaattatacaattttatgtttgctatggagcgcaattatgcaaactttgttatagcatacaaatatgaattttttgtttgttatatgtgaaagttgcccattaattaaagagtcaataaaatagcggtctaatcaagtcctaagcagcccaaggtttgacccgtcaacccaaaaatgaataatattatgggaaaagggtatgatatacccctcaactttgtcatttgaaactgatatacccctcgttatgaaagtggctcatatatacccttaccgttatacaaatggttcacatatacctctgccgttacaaaatgagctcatatatacccttcatttaacgaaagtgaaaaaattacttttaaatttataattttactttaattttaaaaaaaaatatatttaggggcatatatgattcttttttcaaagttcaaggtatatttcaaatttttttaatacataaattatttttttgacttatttattataattatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105182" stop="103882"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104882" g_stop="104182" g_length="701"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E578389" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578389" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104882" e_stop="104182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACATATATCTTATTGCTATACACTTATAATTATGCAATATACATACATTTTAATTCGGTTCAATTATATGCAAAGCAAATTTTATAATAATATTGCAGCGAAATAGGCAGCGAATTATACAATTGTAGTTAAATAGGATAACGAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACAATTTAGGTCAGCGAATTATACAATTTTATGTTTGCTATGGAGCGCAATTATGCAAACTTTGTTATAGCATACAAATATGAATTTTTTGTTTGTTATATGTGAAAGTTGCCCATTAATTAAAGAGTCAATAAAATAGCGGTCTAATCAAGTCCTAAGCAGCCCAAGGTTTGACCCGTCAACCCAAAAATGAATAATATTATGGGAAAAGGGTATGATATACCCCTCAACTTTGTCATTTGAAACTGATATACCCCTCGTTATGAAAGTGGCTCATATATACCCTTACCGTTATACAAATGGTTCACATATACCTCTGCCGTTACAAAATGAGCTCATATATACCCTTCATTTAACGAAAGTGAAAAAATTACTTTTAAATTTATAATTTTACTTTAATTTTAAAAAAAAATATATTTAGGGGCATATATGATTCTTTTTTCAAAGTTCAAGGTATATTTCAAATTTTTTTAATACATAAATTATTTTTTTGACTTATTTATTATAATTATTTGA</genome_strand>
        <mrna_strand>GAAAAACATATATCTTATTGCTATACACTTATAATTATGCAATATACATACATTTTAATTCGGTTCAATTATATGCAAAGCAAATTTTATAATAATATTGCAGCGAAATAGGCAGCGAATTATACAATTGTAGTTAAATAGGATAGCGAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACAATTTAGGTCAGCGAATTATACAATTTTATGTTTGCTATGGAGCGCAATTATGCAAACTTTGTTATAGCATACAAATATGAATTTTTTGTTTGTTATATGTGAAAGTTGCCCATTAATTAAAGAGTCAATAAAATAGCGGTCTAATCAAGTCCTAAGCAGCCCAAGGTTTGACCCGTCAACCCAAAAATGAATAATATTATGGGAAAAGGGTATGATATACCCCTCAACTTTGTCATTTGAAACTGATATACCCCTCGTTATGAAAGTGGCTCATATATACCCTTACCGTTATACAAATGGTTCACATATACCTCTGCCGTTACAAAATGAGCTCATATATACCCTTCATTTAACGAAAGTGAAAAAATTACTTTTAAATTTATAATTTTACTTTAATTTTAAAAAAAAATATATTTAGGGGCATATATGATTCTTTTTTCAAAGTTCAAGGTATATTTCAAATTTTTTTAATACATAAATTATTTTTTTGACTTATTTATTATAATTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E393076" ref_strand="+" ref_description="SGN-E393076 [TUS-37-J4]">
      <seq>taaaatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtctcgctttatacaaaaacaaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaattgtataattcgttggcctttttctctgcaatatttgaagtaaaatgtttgtaatttgtataattaagtgtataacacgaagatatatatttttacatgtgtatatacaattttctctcgctttatacaaaataaaaacagaatttatttttttttgtgtatatagcgagatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104526" stop="105456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104826" g_stop="105012" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105013" i_stop="105044" i_length="32">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105045" g_stop="105182" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="325" r_length="138" r_score="0.884"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E393076" ref_strand="+">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>325</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E393076" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104826" e_stop="105012"/>
          <exon e_start="105045" e_stop="105182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAATAAGATATATGTTTTTCTCTCGCTTTATACGAAAATAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGACCTTTTTCTTTGCAATATTTGTATAAAATTTGCGTTTGTCTACAATTGAATTGAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATGTTTTTGCATGTGTATATACAATTTTGTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCAAGAGGG</genome_strand>
        <mrna_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCTCGCTTTATACAAAAACAAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATTGTATAATTCGTTGGCCTTTTTCTCTGCAATATTT................................GAAGTAAAATGTTTGTAATTTGTATAATTAAGTGTATAACACGAAGATATATATTTTTACATGTGTATATACAATTTTCTCTCGCTTTATACAAAATAAAAACAGAATTTATTTTTTTTTGTGTATATAGCGAGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392727" ref_strand="+" ref_description="SGN-E392727 [TUS-37-J5]">
      <seq>taatatgtatgtatattgcataattataagtgtatggcaagaatatatatgtttttgtcacgctttatacaaaatttaaaacacaatatatacacttctgttgtataaagttagagaaaattgtatttcactgcaattatataattcacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="104526" stop="105278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104826" g_stop="104978" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E392727" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>153</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392727" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104826" e_stop="104978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAATAAGATATATGTTTTTCTCTCGCTTTATACGAAAATAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATT</genome_strand>
        <mrna_strand>TAATATGTATGTATATTGCATAATTATAAGTGTATGGCAAGAATATATATGTTTTTGTCACGCTTTATACAAAATTTAAAACACAATATATACACTTCTGTTGTATAAAGTTAGAGAAAATTGTATTTCACTGCAATTATATAATTCACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260907" ref_strand="+" ref_description="SGN-E260907 [cLEG-55-O20]">
      <seq>gcttatcaagctttcttctttcgcacgccattctcaccttctcctttgtgtgtatcaactgccgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105231" stop="108138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105531" g_stop="106099" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107838" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="755" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E260907" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105531" e_stop="106099"/>
          <exon e_start="107653" e_stop="107838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTATCAAGCTTTCTTCTTTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTC</genome_strand>
        <mrna_strand>GCTTATCAAGCTTTCTTCTTTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E469770" ref_strand="+" ref_description="SGN-E469770 [cSTB-14-M9]">
      <seq>ttcgcactccattctcactttttcttttgattgtatcaactgccgtaatttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52021" stop="108026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105550" g_stop="106099" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="550" r_length="550" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107726" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="624" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E469770" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E469770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105550" e_stop="106099"/>
          <exon e_start="107653" e_stop="107726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTT</genome_strand>
        <mrna_strand>TTCGCACTCCATTCTCACTTTTTCTTTTGATTGTATCAACTGCCGTAATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201621" ref_strand="+" ref_description="SGN-E201621 [cLEC-11-I18]">
      <seq>acgccattctcaccttctcctttgtgtgtatcaactgccgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacnggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105255" stop="106279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105555" g_stop="105979" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E201621" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105555" e_stop="105979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAG</genome_strand>
        <mrna_strand>ACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACNGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719903" ref_strand="+" ref_description="SGN-E719903 [FC09AH01]">
      <seq>gaccttctcctgtgtcagattgatatgcgctaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctgcctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105266" stop="109760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105565" g_stop="106099" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="535" r_length="535" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="766" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109460" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="767" r_stop="879" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E719903" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105565" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGG</genome_strand>
        <mrna_strand>GACCTTCTCCTGTGTCAGATTGATATGCGCTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTGCCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450713" ref_strand="+" ref_description="SGN-E450713 [cSTS-10-O1]">
      <seq>ttcttttgattgtatcaactgccgtaatttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105272" stop="108026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105571" g_stop="106099" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="529" r_length="529" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107726" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="603" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E450713" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450713" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105571" e_stop="106099"/>
          <exon e_start="107653" e_stop="107726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTT</genome_strand>
        <mrna_strand>TTCTTTTGATTGTATCAACTGCCGTAATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286819" ref_strand="+" ref_description="SGN-E286819 [cLES-14-O3]">
      <seq>tcctttgtgtgtatcaactgccgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105272" stop="106362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105572" g_stop="106062" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E286819" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105572" e_stop="106062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCT</genome_strand>
        <mrna_strand>TCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702837" ref_strand="+" ref_description="SGN-E702837 [FA19DD01]">
      <seq>atcaactgccgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctgcctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105284" stop="109811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105584" g_stop="106099" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="747" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="906" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109597" g_stop="109607" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="907" r_stop="917" r_length="11" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E702837" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E702837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105584" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109607"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATT</genome_strand>
        <mrna_strand>ATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTGCCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480539" ref_strand="+" ref_description="SGN-E480539 [cSTD-14-E2]">
      <seq>caactgccgtaatttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctntgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105286" stop="107969"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105586" g_stop="106099" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107669" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="531" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E480539" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105586" e_stop="106099"/>
          <exon e_start="107653" e_stop="107669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGA</genome_strand>
        <mrna_strand>CAACTGCCGTAATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTNTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704148" ref_strand="+" ref_description="SGN-E704148 [FA23BH10]">
      <seq>cggtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctgcctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105294" stop="109731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="106099" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="508" r_length="508" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="739" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109431" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="740" r_stop="823" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E704148" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATT</genome_strand>
        <mrna_strand>CGGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTGCCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314875" ref_strand="+" ref_description="SGN-E314875 [cTOA-31-G1]">
      <seq>ccgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105292" stop="106398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105592" g_stop="106098" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E314875" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105592" e_stop="106098"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAA</genome_strand>
        <mrna_strand>CCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729060" ref_strand="+" ref_description="SGN-E729060 [LA19DD08]">
      <seq>cgtaatttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctgcctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcggcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaaacagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatacaccctccccggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105293" stop="108059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105593" g_stop="106099" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107758" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="613" r_length="106" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E729060" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105593" e_stop="106099"/>
          <exon e_start="107653" e_stop="107758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTG</genome_strand>
        <mrna_strand>CGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTGCCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGGCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAAACAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATACACCCTCCCCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E467030" ref_strand="+" ref_description="SGN-E467030 [cPRO-26-H22]">
      <seq>tttttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaagctgttgctcatcacactactgccgccttcataagggttgttggctcagaattcgttcagaaatacttgggtgagggtccgcgaatgggtcgtgatgtcttccgtcttgccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105298" stop="108193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105596" g_stop="106099" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="735" r_length="231" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E467030" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105596" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG</genome_strand>
        <mrna_strand>TTTTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAAGCTGTTGCTCATCACACTACTGCCGCCTTCATAAGGGTTGTTGGCTCAGAATTCGTTCAGAAATACTTGGGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E456549" ref_strand="+" ref_description="SGN-E456549 [cSTS-29-J8]">
      <seq>atttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaagctgttgctcatcacactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105297" stop="108130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105597" g_stop="106099" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107830" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="681" r_length="178" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E456549" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E456549" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105597" e_stop="106099"/>
          <exon e_start="107653" e_stop="107830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTG</genome_strand>
        <mrna_strand>ATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAAGCTGTTGCTCATCACACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E567890" ref_strand="+" ref_description="SGN-E567890 [12087]">
      <seq>atttttttccatttccaacaatggcatcagccatgcttctcggatccaaagccgacaccagagctaccggcaactcgacctggacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctggaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctacttgatgttttgcctccgtgaggctgactcgagtatttcgctggcttagtcaatcagagaagcctgatgttacctacaacgatatggggaggatgtgacattcaaacagcaggaaaattcgtgaggcctgttgagtaacctttggactcatcatgagttgtacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52067" stop="108033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105597" g_stop="106099" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107733" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="595" r_length="86" r_score="0.852"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E567890" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E567890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105597" e_stop="106099"/>
          <exon e_start="107653" e_stop="107733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTC-GATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACC-CGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCT-GAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAG-AATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCC-TGAGGCTGACTCGAGTATTTCGCT-GCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATAT-TGGAGGATGTGACATTCAAA-AGCAGG-AAATTCGTGAGG-CTGTTGAGTTACCTTT-GACTCATCATGAGTTGTACAAG</genome_strand>
        <mrna_strand>ATTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTACTTGATGTTTTGCCTCCGTGAGGCTGACTCGAGTATTTCGCTGGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGGGGAGGATGTGACATTCAAACAGCAGGAAAATTCGTGAGGCCTGTTGAGTAACCTTTGGACTCATCATGAGTTGTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204492" ref_strand="+" ref_description="SGN-E204492 [cLEC-24-A16]">
      <seq>atttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagctcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105297" stop="106284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105597" g_stop="105984" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E204492" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105597" e_stop="105984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTC</genome_strand>
        <mrna_strand>ATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGCTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558902" ref_strand="+" ref_description="SGN-E558902 [18315]">
      <seq>tttttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105298" stop="108007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105598" g_stop="106099" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107707" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="557" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E558902" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105598" e_stop="106099"/>
          <exon e_start="107653" e_stop="107707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTAC</genome_strand>
        <mrna_strand>TTTTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586044" ref_strand="+" ref_description="SGN-E586044 [73468]">
      <seq>ttatttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105298" stop="108106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105599" g_stop="106099" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107806" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="655" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E586044" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E586044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105599" e_stop="106099"/>
          <exon e_start="107653" e_stop="107806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAA</genome_strand>
        <mrna_strand>TTATTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254183" ref_strand="+" ref_description="SGN-E254183 [cLEG-34-B11]">
      <seq>ttttatccacttccaacaatggcagcagccatggttctcgatccaaaaccctcaccggagctacctgcaactcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105299" stop="108027"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105599" g_stop="106099" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107727" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="576" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E254183" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E254183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105599" e_stop="106099"/>
          <exon e_start="107653" e_stop="107727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTG</genome_strand>
        <mrna_strand>TTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465706" ref_strand="+" ref_description="SGN-E465706 [cPRO-22-A17]">
      <seq>tttttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgaggtgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggagaactatgcttgcaaaagctgatgctcatcacactactgccgccttcataagggttgttggctcagaattcgatcagaaatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52070" stop="108175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105600" g_stop="106099" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107875" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="723" r_length="223" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E465706" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105600" e_stop="106099"/>
          <exon e_start="107653" e_stop="107875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACT</genome_strand>
        <mrna_strand>TTTTTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGGTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAGAACTATGCTTGCAAAAGCTGATGCTCATCACACTACTGCCGCCTTCATAAGGGTTGTTGGCTCAGAATTCGATCAGAAATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558921" ref_strand="+" ref_description="SGN-E558921 [18336]">
      <seq>ttccatttccaacaatggcatcagccatgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaagctgttgctcatcacactactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105304" stop="108131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105603" g_stop="106099" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107831" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="676" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E558921" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105603" e_stop="106099"/>
          <exon e_start="107653" e_stop="107831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGC</genome_strand>
        <mrna_strand>TTCCATTTCCAACAATGGCATCAGCCATGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAAGCTGTTGCTCATCACACTACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E438233" ref_strand="+" ref_description="SGN-E438233 [cSTA-6-N7]">
      <seq>tccacttccaacaatggcatcagccatggttctcgatccaaagccgacaccggagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctttacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctactcaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaagatgtgacattcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105304" stop="106402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105604" g_stop="106099" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E438233" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E438233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105604" e_stop="106099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC</genome_strand>
        <mrna_strand>TCCACTTCCAACAATGGCATCAGCCATGGTTCTCGATCCAAAGCCGACACCGGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTTTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTCAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E480574" ref_strand="+" ref_description="SGN-E480574 [cSTD-14-O2]">
      <seq>tgcttctcgatccaaagccgacaccagagctaccggcaactcgacctgacttatcgtcacacgatgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactacgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatgctctagttgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105330" stop="106330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105630" g_stop="106030" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E480574" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E480574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105630" e_stop="106030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTT</genome_strand>
        <mrna_strand>TGCTTCTCGATCCAAAGCCGACACCAGAGCTACCGGCAACTCGACCTGACTTATCGTCACACGATGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATGCTCTAGTTGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269917" ref_strand="+" ref_description="SGN-E269917 [cLEM-7-C19]">
      <seq>accggagctacctgcaactcgacccgactcatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105352" stop="108129"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105652" g_stop="106099" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="448" r_length="448" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107829" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="625" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E269917" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E269917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105652" e_stop="106099"/>
          <exon e_start="107653" e_stop="107829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACT</genome_strand>
        <mrna_strand>ACCGGAGCTACCTGCAACTCGACCCGACTCATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E707061" ref_strand="+" ref_description="SGN-E707061 [FA31DG11]">
      <seq>ctcgacccgacttatcgtcacacgacgttccttccgaaaacggcgaagacgacctctacgctcgcctgaaatctctacaacggcagctggagttcatcgagatccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105369" stop="110622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105669" g_stop="106099" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="662" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109380" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="695" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109381" i_stop="109715" i_length="335">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109716" g_stop="109749" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="729" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="730" r_stop="812" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110257" g_stop="110322" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="813" r_stop="878" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E707061" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707061" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105669" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109380"/>
          <exon e_start="109716" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCC</genome_strand>
        <mrna_strand>CTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTT...............................................................................................................................................................................................................................................................................................................................................GCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGAT-AAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479149" ref_strand="+" ref_description="SGN-E479149 [cSTD-8-F18]">
      <seq>tcgacctgacttctcgtcacacgctgttccttccgaaaacggcgatgacgacctctacgctcgcctgaaatctctaccaacggcagctggagttcatcgagctccaagaggaataccgtgaaggccgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtgaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaactaccgggatctaattactacgtgaggatactcagcacgattaatagggagctacttaagccttcggcttctgtggctttgcatcgtcactcgaatcctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgcttagtcaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagacctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaagctgttgctcatcacactactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105370" stop="108130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105670" g_stop="106099" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107830" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="610" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E479149" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105670" e_stop="106099"/>
          <exon e_start="107653" e_stop="107830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTA-CAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATA-CGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGA-CGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTG</genome_strand>
        <mrna_strand>TCGACCTGACTTCTCGTCACACGCTGTTCCTTCCGAAAACGGCGATGACGACCTCTACGCTCGCCTGAAATCTCTACCAACGGCAGCTGGAGTTCATCGAGCTCCAAGAGGAATACCGTGAAGGCCGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTGAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACCGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATAGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTGCATCGTCACTCGAATCCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTTAGTCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGA-CCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAAGCTGTTGCTCATCACACTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247462" ref_strand="+" ref_description="SGN-E247462 [cLEG-3-C23]">
      <seq>ccaagaggaatacgtgaaggacgaactgaagaatctccgccgtgaacatttacgggcacaggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105472" stop="108101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105772" g_stop="106099" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107801" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="477" r_length="149" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E247462" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105772" e_stop="106099"/>
          <exon e_start="107653" e_stop="107801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCT</genome_strand>
        <mrna_strand>CCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E739523" ref_strand="+" ref_description="SGN-E739523 [LC17DB11]">
      <seq>cactggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105528" stop="110331"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105828" g_stop="106099" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="503" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="662" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="815" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109959" g_stop="110031" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="888" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E739523" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>888</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E739523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105828" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTA</genome_strand>
        <mrna_strand>CACTGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735355" ref_strand="+" ref_description="SGN-E735355 [LC01AG07]">
      <seq>cactggaagaggtaaaacggatccagtcggtgccgttagtaattggccagttcatggagatgattgaccagaataacgccatagttggttcaacgacgggatctaattactacgtgaggatactcagcacgattaatcgggagctacttaagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105528" stop="109995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105828" g_stop="106099" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="503" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="662" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109597" g_stop="109695" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="761" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E735355" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105828" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109695"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGAT</genome_strand>
        <mrna_strand>CACTGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727313" ref_strand="+" ref_description="SGN-E727313 [LA14BD06]">
      <seq>aagccttcggcttctgtggctttacatcgtcactcgaatgctctagttgatgttttgcctcctgaggctgactcgagtatttcgctgctaagccaatcagagaagcctgatgttacctacaacgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggcccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggatcgagatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggcagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="105677" stop="110616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="105977" g_stop="106099" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107653" g_stop="107883" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="354" r_length="231" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="513" r_length="159" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="666" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="750" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="110257" g_stop="110316" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="810" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E727313" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>810</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E727313" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="105977" e_stop="106099"/>
          <exon e_start="107653" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAACGTAAGTCTATTATTTCTGAATTGTGTTAGTTATTGGTTGAATACACTGATTAGGGTTTATATGTTACTGCTTATTAGGGTTGTAATATTTCTGTCTGATATGTTTCTTATTTCTTAGGGTTTATTGGTTAATTTTGCCATTTGGTTTCCTTAATTGGTTCATTAGAGTTTGTAGTGTGAGCTAATGACTTGTGGAACTCTTGCGTTAGGTTTTACTTCATAGTGATTATGAGTTCTAGATTCTGATTTTGCTATCAGCTAGTGTAGACTTCATTAGATGAATGCAGGCTTTCCCGTTACTCCTAAAGTTCATTGCCTTTATTAATTAATGAATCCCAAGAATTGATTTTTATGATAGGCTCACTAAGAGCTTGAACAACCTTAGTAGAATGAAGATTAATTAGTCAAGGTGTCACCACCAAGAACTTACGTAGATTAGGAAGCAAAGTGCTTGTATATAATCCTAATTATTTAGCGAGTTAAATTAGAAGGTGAATGCTGCTTTCAAGTCTCAATGTAATGTTAGAATGCCTCATTTCTTCTTATATGGTTATCCTAGATTTCTGAACACGTTTTGTGACAGAATGACAATATTTTCAATAGTAATTTTAAAACCAAGAGAAGAAACTCCTTTTTAAAAATCATATGAACTCATTGGGGAGATTATTTCTCTCTAATCAATCAATTCAGTGGTCGCATACTCATACAATCACATTGCGCTATATATTCTTATTTAACCTCTGTTCCTATCAGCCTCTCCGTGAAAGATAAGTACACCTGCAGCCATCACTTTCCCCTGGCCTTATTCAAAATCCTATTATTGGCTTCTAAAAGGCAGCTAAGTGGCAATTAGTACCTATACTCTAGTCCTTAGAGTAGTTGTAATGTGTGCAGCACTTCTATCAACCACATCAAGTGAGAAGGAAATTGGAAAATCTTGTTCACTGGTTGCAGAAGGAAGCATATGTTGCCTTAAAATTGTGGCTAGAAAAACGGGTGATACAACAAGCATGACATGTTCTCAGAAGAATCAGGATAACAAAGTGTGGTTATTGGTGTCTTTGGATATCCGGTGCTCCATAAATGTTGTATCCTGGATGAATATGGATATTGTGGTTTACTTTTGGTATGCAGCCCTTGTTGTATTGTGGGGAAGTAGGAAATAGGTTTGCAAATGATTGAACTGATTTTGTAATTAACTGACGAATCACAATTTGGTGATCTGAATCCACTTATCTATTCATAAAAGGAACATGGGTGTGGAGTGCACAACTCGTAGACTACTCTCCATTATTTTTCTTCAAAATCGTGAAACATTAGTGAGGTACTGGGTATTAGTAAAGAATGCATCTAATTCTATAATCAGAAGTCAGAACACTAATGAGGAAAAGGCATTATGTTCTTATCCTAATATAAATGCCTTTTATATAAGCTTGTATATGCGTCACATTACAGCTACAGGCAAGCAAGTGGACGTCTGATATATATAGGGCTGTTAATGTGCCTTCCTTTATATTCTTACTTTATCTTAATCTCGTTTTTTCCTCACACCAGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATA</genome_strand>
        <mrna_strand>AAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGCCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGATCGAGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGCAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732461" ref_strand="+" ref_description="SGN-E732461 [LB02AH12]">
      <seq>acgatattggaggatgtgacattcaaaagcaggaaattcgtgaggctgttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaagtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagagggttgaccttgtacactcaatatgaaaattccttttaatatgtttttaatggaactgctggtttgtcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107351" stop="110793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107651" g_stop="107883" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="392" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="545" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="629" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110257" g_stop="110494" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="868" r_length="239" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E732461" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E732461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107651" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGA-GGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAAC</genome_strand>
        <mrna_strand>ACGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAAGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGGTTGACCTTGTACACTCAATATGAAAATTCCTTTTAATATGTTTTTAATGGAACTGCTGGTTTGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726935" ref_strand="+" ref_description="SGN-E726935 [LA13BA04]">
      <seq>tttgagttacctttgactcatcatgagttgtacaagcagattggtatagaccctccccgtggtgtcttgctttatggtccaccaggtactgggaaaactatgcttgcaaaggctgttgctcatcacactactgctgccttcataagggtggttggctcagaatttgttcagaagtacttgggtgagggtccacgaatggttcgtgatgtgttccgtcttgccaaagaaaatgctcctgccattatatttattgatgaggtagatgcaattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctgggttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccattttagctgcttaagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107399" stop="110888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107698" g_stop="107883" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109348" g_stop="109506" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="345" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="498" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="582" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="110257" g_stop="110588" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="914" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E726935" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107698" e_stop="107883"/>
          <exon e_start="109348" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110588"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAGGTATGCATTGAAGTAATGAAATACCATGAGCATTTTTTGTTATGCATCAATGTGTTGTTACTACGTACTAATCACACCTATTGTTGATGATTCAGACTATTTGCACAGCGTTGTTTGAAATGCAATTTCTTTTTTTGAGGTCTTCCTTTCTATTGTATAGAAAGAAATTTGGAAGATAAAAGGAATTGGTGTATTATCTCAGTTTCTTTTATTTTTTAATTTCATCATTAGTAGCTATTGTTTGTGCAATAATAAGGTAATTATTAATTAATGAATATTACTTCTACCGCAAACTGTATGATATAATTCTATTTGCTGTAATTCACTTTTTTTTTTATCGACATCAAAGATTAGGCTATTAATTTGTGTAAAAAATTAATTAAAGATTACATTTTACCTTATTAAAAGAAAATTACTGATTTAGAAGCTAAAAAGCACCATTAGAAAATATACCCTCTCCCGCTACATCAAATGTCTTTGTTTAAATTTGCATTTCCATGAAAGTATAATTGAACGCTGAATTCTTTATCTTTGTTGGGTGAACATGTGGAGCCAATTGTTGGAAATTTGATGGTTGTAAACGGAATGGAAACATTGCTAGAAGGCACCATGAAAACTAAAAATAACACACTCACTGCTATCTGCATTCTCTTGTTTAGAGGCTGGAATTTTTCTCTACTATAGTTCCATAGGGTTTGACTCGAGACCTCTCGTGAATCGTGGTAAAGATTGCCCATTGTCTCAAAACCTTTTCAATTTCTTTAATTTCATCGTATGGCTTATTGCCTCTGTTTGTGTCTCACTATGTTAGGCTACTACCACAGTTCCAACTTGTCACTGTAATAAGACTTTTTAGCAAAGGTGCAACTGAAAGTACCAAAAAGATGGATAACCCTGAGTAATACCATGAATACTGCGTATAGCATTGCATTCTTCTGCAGGAACTCCAAACTTTTGTTCACACATCTGGCACCGAGCTGGATACTCGTTTAAACTCCTCTTGCATCTTATAGACATTGTCAAAGAAGACCCTACGAATCTACATCAGTAAATACCTCGACAAGAAAGATATTGATCAGTAAAGATACAGAACACAGAATCTCCTATTTCCGTTGTGTTGACTGGTCAACATAATGTGCACGATCCATCCTTAAAATTAGAAAGCCATATAGGAGAACTACTCGTCGATACTTAGTAGTTAACCGAGAAGCCATTAAGCCTTTTTTTCTTTTTGAGAAGTTTAAGACAAACCATCTTTCTTGTTGCTGCATGTTCTCCACAACTCTTTTATCTAAGATGCAACTTCAGTTCAAATTGCAATTCTCGGAGCCAAACTTGTTTGTCTGGAGATATCTTTTATTTCTTAGTTAGGACTGGTCAAGTTTGTCCAAAAAATGATGGCAAGACTGCATTTGTTTCTATTGCTCAAAGTTAACTTTCACCTTTTATTATCTGACTGTTCAGGGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTAT</genome_strand>
        <mrna_strand>TTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGGTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTTAGCTGCTTAAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711374" ref_strand="+" ref_description="SGN-E711374 [FB01DD02]">
      <seq>aattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109128" stop="110793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109428" g_stop="109506" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="232" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="316" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110257" g_stop="110494" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="554" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E711374" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109428" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAAC</genome_strand>
        <mrna_strand>AATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712470" ref_strand="+" ref_description="SGN-E712470 [FB04DG09]">
      <seq>aattgccactgcgaggtttgatgctcaaactggagctgatagggaggtccagcgtatcttgatggagttgcttaatcagatggacggatttgaccagacagtgaatgtgaaagttatcatggcaactaacagagctgatactttggaccctgcacttctgcgtcctggaaggcttgatcggaagattgaatttcctttgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109128" stop="110793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109428" g_stop="109506" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109597" g_stop="109749" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="232" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="109959" g_stop="110042" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="316" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="110257" g_stop="110494" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="554" r_length="238" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E712470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109428" e_stop="109506"/>
          <exon e_start="109597" e_stop="109749"/>
          <exon e_start="109959" e_stop="110042"/>
          <exon e_start="110257" e_stop="110494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAGGTAGGCTTCTACAAATTCCTGAAGTAATCCCATAAGAATTTACAGTTTTTGCATTGTTCACGAGGTTTCCTTTTGGTATGTCTTATGCAGATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAAC</genome_strand>
        <mrna_strand>AATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG..........................................................................................ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549630" ref_strand="+" ref_description="SGN-E549630 [TUS-6-C9](-)">
      <seq>cttgcactgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgaggtttgtctctttatacttcatctattttttcgactgataacaggattcttcactattgattcaaaatgttgatgtctactgttacaactaagagtagttctttattttgcttcatctgctttggtccttctatttttaaaatgtgaatgatctttataattgaagagtcaatttgaccaacacgactgtgatgcacatgttgcaatgtctacagattgcagctatatgtcaggaagcaggtacgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgcttaagtatgcgcattcgaaggggtgtgtctgtagactcgcagtcatttaatgccgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56291" stop="110936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109712" g_stop="109749" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109959" g_stop="110636" g_length="678"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="716" r_length="678" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E549630" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109712" e_stop="109749"/>
          <exon e_start="109959" e_stop="110636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTAT-CGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGC</genome_strand>
        <mrna_strand>CTTGCACTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTACGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATGCGCATTCGAAGGGGTGTGTCTGTAGACTCGCAGTCA-TTTAATGCCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549826" ref_strand="+" ref_description="SGN-E549826 [TUS-6-C9]">
      <seq>cttcgcctgataggcgtcaaaagaggcttgtttttcaggtctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgaggtttgtctctttatacttcatctattttttcgactgataacaggattcttcactattgattcaaaatgttgatgtctactgttacaactaagagtagttctttattttgcttcatctgctttggtccttctatttttaaaatgtgaatgatctttataattgaagagtcaatttgaccaacacgactgtgatgcacatgttgcaatgtctacagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56289" stop="110880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109712" g_stop="109749" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209">
            <donor d_prob="0.936" d_score="0.00"/>
            <acceptor a_prob="0.680" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109959" g_stop="110580" g_length="622"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="660" r_length="622" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E549826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109712" e_stop="109749"/>
          <exon e_start="109959" e_stop="110580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAGGTAGAATTTGGAAGATTTTGCCTCAGGACCTTCTTCAACCCTATTTCCCATTAGCAAACATAAAGAAATTAAGATTGGAATAATATTGAAGGAAGTTATGATAGATTGGCTTCTGAATTCTGCCTCTCACTCATTATGTTATATTGTACCAGTATTTCCAATTTTTTCGCAATGAACCTCAAATCTGAAAGTTGGATGATTTTGGCCAGGTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGC</genome_strand>
        <mrna_strand>CTTCGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG.................................................................................................................................................................................................................GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734247" ref_strand="+" ref_description="SGN-E734247 [LB12AF10]">
      <seq>ctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgcttaagtatcgcattcgaaggggtgtgtctgtagactctcagtcattttaatgccgcattctgtgggatggctaatctcatatataagctttgcngtanaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109661" stop="110982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109961" g_stop="110042" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110257" g_stop="110677" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="503" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="505" polyA_stop="530"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E734247" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109961" e_stop="110042"/>
          <exon e_start="110257" e_stop="110677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTA</genome_strand>
        <mrna_strand>CTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCNGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734128" ref_strand="+" ref_description="SGN-E734128 [LB11DD10]">
      <seq>ctgtactgctaagatgaacctaggtgacgaggttgacttggaagattatgtttctcgccctgataaaattagtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgcttaagtatcgcattcgaaggggtgtgtctgtagactctcagtcattttaatgccgcattctgtgggatggctaatctcatatataagctttgcagtaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109661" stop="110982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109961" g_stop="110042" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110257" g_stop="110677" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="503" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="504" polyA_stop="529"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E734128" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E734128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109961" e_stop="110042"/>
          <exon e_start="110257" e_stop="110677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTA</genome_strand>
        <mrna_strand>CTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227613" ref_strand="+" ref_description="SGN-E227613 [cLEL-30-F16](-)">
      <seq>gtgctgctgagattgcagctatatgtcaggaagcaggtatgcatgcagtgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgcttaagtatcgcattcgaaggggtgtgtctgtagactctcagtcattttaatgccgcattctgtgggatggctaatctcatatataagctttgcagtagtacattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109955" stop="110988"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110032" g_stop="110042" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110257" g_stop="110692" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="447" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="459"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E227613" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110032" e_stop="110042"/>
          <exon e_start="110257" e_stop="110692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTCATTCG</genome_strand>
        <mrna_strand>GTGCTGCTGAG......................................................................................................................................................................................................................ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341077" ref_strand="+" ref_description="SGN-E341077 [cTOE-22-A16]">
      <seq>tgcgaaagaatcgatatgtcatactccccaaggactttgaaaagggttacaggaccaatgtgaagaagccggacactgacttcgagttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="109994" stop="110843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110294" g_stop="110543" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E341077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>250</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110294" e_stop="110543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAA</genome_strand>
        <mrna_strand>TGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E227252" ref_strand="+" ref_description="SGN-E227252 [cLEL-30-F16](-)">
      <seq>agaagccggacactgacttcgaggttctataagtgatctgtaaaagtagatgagctaatatttttagaggttgaccttgtacactcaatatgaaaattctttttaatatgtttttaatggtactgctggtttgtcaaacgtctgctggtttgtaccgttctagattccattatttgttcgttcagaaagtgcagcgtgagcagtctaattatccatttaagctgcttaagtatcgcattcgaaggggtgtgtctgtagactctcagtcattttaatgccgcattctgtgggatggctaatctcatatataagctttgcagtagtacattttccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="+" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110057" stop="110987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110357" g_stop="110687" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="334" polyA_stop="349"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="+" ref_id="SGN-E227252" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110357" e_stop="110687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCCGGACACTGACTTCGA-GTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTC</genome_strand>
        <mrna_strand>AGAAGCCGGACACTGACTTCGAGGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355096" ref_strand="+" ref_description="SGN-E355096 [cTOS-18-D21]">
      <seq>gaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaactaattatttccgagtatttggctagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112022" stop="111156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111722" g_stop="111447" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E355096" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111722" e_stop="111447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTATAACTGGAAACA</genome_strand>
        <mrna_strand>GAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356351" ref_strand="+" ref_description="SGN-E356351 [cTOS-20-O4]">
      <seq>gaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaactaattatttccgagtatttggctagtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112022" stop="111156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111722" g_stop="111447" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="276" r_length="276" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E356351" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>276</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111722" e_stop="111447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTATAACTGGAAACA</genome_strand>
        <mrna_strand>GAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315739" ref_strand="+" ref_description="SGN-E315739 [cTOA-26-E12]">
      <seq>aaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaactaattatttccgagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112756" stop="111170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112456" g_stop="112380" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="159" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111466" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="482" r_length="323" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E315739" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E315739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112456" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTG</genome_strand>
        <mrna_strand>AACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354322" ref_strand="+" ref_description="SGN-E354322 [cTOS-16-N20]">
      <seq>tctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113013" stop="111183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112713" g_stop="112380" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="416" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111481" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="724" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E354322" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112713" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATT</genome_strand>
        <mrna_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354504" ref_strand="+" ref_description="SGN-E354504 [cTOS-17-A17]">
      <seq>ttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112940" stop="111183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112640" g_stop="112380" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111481" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="651" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E354504" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112640" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111481"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATT</genome_strand>
        <mrna_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351596" ref_strand="+" ref_description="SGN-E351596 [cTOS-12-B24]">
      <seq>ttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112940" stop="111183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112640" g_stop="112380" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111482" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="650" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E351596" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112640" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAAT</genome_strand>
        <mrna_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355511" ref_strand="+" ref_description="SGN-E355511 [cTOS-25-G10]">
      <seq>tctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113013" stop="111187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112713" g_stop="112380" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="416" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111485" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="719" r_length="303" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E355511" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112713" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACT</genome_strand>
        <mrna_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTG-AATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356991" ref_strand="+" ref_description="SGN-E356991 [cTOS-22-C15]">
      <seq>gcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtaccccctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112942" stop="111187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112642" g_stop="112380" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="345" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111486" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="648" r_length="303" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E356991" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112642" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAC</genome_strand>
        <mrna_strand>GCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E694975" ref_strand="+" ref_description="SGN-E694975 [LH_Ea05F05](-)">
      <seq>ccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcgtaatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttatgtctttgcatgaacttaatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatggttaagaggtggtatgttttgatgaattgatacatagtgacaggttgtaaaaagattctttagtgccccctacctgcaactaattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113107" stop="111189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112807" g_stop="112380" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="510" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111491" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="805" r_length="295" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="820" polyA_stop="829"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E694975" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112807" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCT</genome_strand>
        <mrna_strand>CCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCGTAA---TCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTATGTCTTTGCATGAACTTAATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGGTTAAGAGGTGGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAAAAAGATTCTTTAGTGCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E696812" ref_strand="+" ref_description="SGN-E696812 [LH_Ea10B18](-)">
      <seq>cagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgaactgattatttgaaatacaagtcagagaaccgtattttaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcgtaatctcacaaatagcacatttagttttttagtctgttgaatggaactttgttacttgaatttatgtctttgcatgaacttaatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatggttaagaggtcgtatgttttgatgaattgatacatagtgacaggttgtaataacattctttagtgccccctacctgcaactaattatttctgagtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113033" stop="111170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112733" g_stop="112380" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="436" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111491" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="731" r_length="295" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="756" polyA_stop="774"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E696812" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E696812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112733" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCT</genome_strand>
        <mrna_strand>CAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATTTGAAATACAAGTCAGAGAACCGTATTTTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCGTAA---TCTCACAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTATGTCTTTGCATGAACTTAATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGGTTAAGAGGTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTGCCCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344155" ref_strand="+" ref_description="SGN-E344155 [cTOF-16-K20]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="111207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111957" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="560" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111956" i_stop="111789" i_length="168">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111782" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="566" r_length="6" r_score="0.571"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="111781" i_stop="111618" i_length="164">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="111617" g_stop="111501" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="683" r_length="117" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E344155" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111957"/>
          <exon e_start="111788" e_stop="111782"/>
          <exon e_start="111617" e_stop="111501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTT</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAA........................................................................................................................................................................GTTC-AG....................................................................................................................................................................TATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552437" ref_strand="+" ref_description="SGN-E552437 [cTSB-3-O21]">
      <seq>ctgatccaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgatacatagtgacaggttgtaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113112" stop="111209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112812" g_stop="112380" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111509" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="794" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E552437" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112812" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAA</genome_strand>
        <mrna_strand>CTGATCC-AAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E732092" ref_strand="+" ref_description="SGN-E732092 [LB01BA08]">
      <seq>ccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114136" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113836" g_stop="113811" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="528" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="610" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111520" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="879" r_length="269" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E732092" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>879</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113836" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACA</genome_strand>
        <mrna_strand>CCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712607" ref_strand="+" ref_description="SGN-E712607 [FB05BC08]">
      <seq>cttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112980" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112680" g_stop="112380" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="383" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111526" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="646" r_length="263" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E712607" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112680" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATA</genome_strand>
        <mrna_strand>CTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E734166" ref_strand="+" ref_description="SGN-E734166 [LB11DH01]">
      <seq>cgctgatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctggatttgaaatttcttggatgattaagagctcgtatgttttgatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111528" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="892" r_length="261" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E734166" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACA</genome_strand>
        <mrna_strand>CGCTGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGGATTTGAAATTTCTTGGATGATTAAGAGCTCGTATGTTTTGATGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703221" ref_strand="+" ref_description="SGN-E703221 [FA20DF04]">
      <seq>cgaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114134" stop="111231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113834" g_stop="113811" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="526" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="608" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111531" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="866" r_length="258" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E703221" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>866</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113834" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGAT</genome_strand>
        <mrna_strand>CGAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357801" ref_strand="+" ref_description="SGN-E357801 [cTOS-24-M13]">
      <seq>tctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaatttttgaatttatatggtctgnattngaaatttcttgtatgattaagagctcgtatgttttgatgaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113013" stop="111232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112713" g_stop="112380" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="416" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111532" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="673" r_length="257" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E357801" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112713" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGA</genome_strand>
        <mrna_strand>TCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTTGAATTTATATGGTCTGNATTNGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726750" ref_strand="+" ref_description="SGN-E726750 [LA12CH05]">
      <seq>ccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatnngtctgtattgaaattcttgtatgattaagagctcgtatgttttgatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114136" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113836" g_stop="113811" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="528" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="610" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111537" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="861" r_length="251" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="862" polyA_stop="879"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E726750" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113836" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGT-TCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</genome_strand>
        <mrna_strand>CCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATNNGTCTGTA-TTGAAA-TTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390544" ref_strand="-" ref_description="SGN-E390544 [TUS-44-C17]">
      <seq>tcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagttttctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattttaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatttgcttaggaaattgaagtgtcataattttttcagaaatagcacatttagttttttagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaaaaaaaaaaaaaaaaaaactcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112926" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112626" g_stop="112380" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="329" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111537" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="581" r_length="252" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="582" polyA_stop="600"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E390544" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390544" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112626" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</genome_strand>
        <mrna_strand>TCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTTCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTTTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATTTGCTTAGGAAATTGAAGTGTCATAATTTTTTCAGAAATAGCACATTTAGTTTTTTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232112" ref_strand="-" ref_description="SGN-E232112 [cLED-7-H18]">
      <seq>cgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtccacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatgaaaaaaaaaaaaaaaaaaactcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112881" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112581" g_stop="112380" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="284" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111537" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="536" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="555"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E232112" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232112" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112581" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</genome_strand>
        <mrna_strand>CGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCCACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232104" ref_strand="-" ref_description="SGN-E232104 [cLED-7-D18]">
      <seq>tgctcaaaaggctccccgccgtgccaaattcaagtttactggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgtttatttgaaatacaagtcagagagccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttggtgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcataaatagcacatttagttttgtagtctgttgaatggaactttgtcacgtgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattaaaatgttctggatttgaaatttcttgtatgattaagagctcgtatgttttcatgaaaaaataaaccaactaatctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112751" stop="111236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112451" g_stop="112380" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="154" r_length="82" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111537" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="406" r_length="252" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E232104" ref_strand="-">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232104" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="112451" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGA</genome_strand>
        <mrna_strand>TGCTCAAAAGGCTCCCCGCCGTGCCAAATTCAAGTTTACTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGTTTATTTGAAATACAAGTCAGAGAGCCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGGTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCATAAATAGCACATTTAGTTTTGTAGTCTGTTGAATGGAACTTTGTCACGTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTAAAATGTTCTGGATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714652" ref_strand="+" ref_description="SGN-E714652 [FB12AC04]">
      <seq>atgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtatgattaagagctcgtatgttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112944" stop="111238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112644" g_stop="112380" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="347" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111538" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="598" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E714652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112644" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATG</genome_strand>
        <mrna_strand>ATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712551" ref_strand="+" ref_description="SGN-E712551 [FB05AF08]">
      <seq>caattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatggtctgtatttgaaatttcttgtatgattaagagctcgtatgttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114150" stop="111241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113850" g_stop="113811" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="542" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="624" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111541" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="872" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E712551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113850" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTG</genome_strand>
        <mrna_strand>CAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGGTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733810" ref_strand="+" ref_description="SGN-E733810 [LB11AA07]">
      <seq>cgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111551" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="869" r_length="238" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E733810" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E733810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349078" ref_strand="+" ref_description="SGN-E349078 [cTOS-2-K12]">
      <seq>ttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaatttcttgtaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112940" stop="111257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112640" g_stop="112380" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111556" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="576" r_length="233" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E349078" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112640" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAG</genome_strand>
        <mrna_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353410" ref_strand="+" ref_description="SGN-E353410 [cTOS-15-B4]">
      <seq>ttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaattcttgtatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112940" stop="111259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112640" g_stop="112380" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="261" r_length="261" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="343" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111559" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="573" r_length="230" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E353410" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112640" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATT</genome_strand>
        <mrna_strand>TTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAAATTCTTGTATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712576" ref_strand="+" ref_description="SGN-E712576 [FB05AH11]">
      <seq>cattatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcctttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113175" stop="111273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112875" g_stop="112380" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="578" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111566" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="801" r_length="223" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E712576" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112875" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTG</genome_strand>
        <mrna_strand>CATTATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCCTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220137" ref_strand="+" ref_description="SGN-E220137 [cLEL-12-N2](-)">
      <seq>gcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgggaaaaaaaataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112061" stop="103601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111761" g_stop="111573" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E220137" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E220137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111761" e_stop="111573"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTT-GAAATTATAATGTTCTGTATTTGAAA</genome_strand>
        <mrna_strand>GCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGGGAAAAAAAATAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350336" ref_strand="+" ref_description="SGN-E350336 [cTOS-5-O17]">
      <seq>ctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112812" stop="111273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112512" g_stop="112380" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="215" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111574" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="430" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="444"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E350336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112512" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353081" ref_strand="+" ref_description="SGN-E353081 [cTOS-14-P23]">
      <seq>ctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112812" stop="111273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112512" g_stop="112380" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="215" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111574" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="430" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="444"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E353081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112512" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354260" ref_strand="+" ref_description="SGN-E354260 [cTOS-16-H15]">
      <seq>ctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112812" stop="111273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112512" g_stop="112380" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="215" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111574" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="430" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="444"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E354260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112512" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>CTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352586" ref_strand="+" ref_description="SGN-E352586 [cTOS-9-D24]">
      <seq>tcgtgttgcattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgttctgtatttgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112811" stop="111273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112511" g_stop="112380" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="213" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111574" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="428" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="442"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E352586" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352586" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112511" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</genome_strand>
        <mrna_strand>TCGTGTTGC-ATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350551" ref_strand="+" ref_description="SGN-E350551 [cTOS-5-O18]">
      <seq>tgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattataatgctctgtatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112808" stop="111275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112508" g_stop="112380" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="211" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111575" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="425" r_length="214" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E350551" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350551" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112508" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGA</genome_strand>
        <mrna_strand>TGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGCTCTGTATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713594" ref_strand="+" ref_description="SGN-E713594 [FB09AC08]">
      <seq>gaggatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcataaagtggggattcaccaagttcaaccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattaaaaaaaaaaaaaaaaaaacaaagggggnnccctttcggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113020" stop="111289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112720" g_stop="112380" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="341" r_length="341" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="423" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111593" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="619" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="620" polyA_stop="642"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E713594" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112720" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</genome_strand>
        <mrna_strand>GAGGATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCATAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAACCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E215589" ref_strand="+" ref_description="SGN-E215589 [cLEL-15-E19](-)">
      <seq>gcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112840" stop="111289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112540" g_stop="112380" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="243" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111593" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="439" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="440" polyA_stop="458"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E215589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112540" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</genome_strand>
        <mrna_strand>GCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217783" ref_strand="+" ref_description="SGN-E217783 [cLEL-23-G5](-)">
      <seq>gccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112829" stop="111289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112529" g_stop="112380" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="232" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111593" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="428" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="429" polyA_stop="447"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E217783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112529" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</genome_strand>
        <mrna_strand>GCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E218283" ref_strand="+" ref_description="SGN-E218283 [cLEL-23-G5](-)">
      <seq>gtgccaaattcaaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattccccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattttgaaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="112731" stop="111289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112431" g_stop="112380" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="135" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111788" g_stop="111593" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="331" r_length="196" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="332" polyA_stop="350"/>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E218283" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112431" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCCAAATTC-AAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</genome_strand>
        <mrna_strand>GTGCCAAATTCAAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCCCCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719122" ref_strand="+" ref_description="SGN-E719122 [FC06DC05]">
      <seq>gggcgattggcggccaatcggccgaattggtttctatatagacaattgttaagccgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggccctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaacttgatcagtatccaattgaacaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114184" stop="111300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113870" g_stop="113811" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="101" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="603" r_length="502" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="685" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111600" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="874" r_length="189" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E719122" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719122" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113870" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTT</genome_strand>
        <mrna_strand>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCCCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E692972" ref_strand="+" ref_description="SGN-E692972 [LH_Ea10B18]">
      <seq>cgttaagccgcagatcaattgcagtgacgccccaattgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgatgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtcagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcgtaatctcacaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttatgtctttgcatgaacttaatcagtatccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114164" stop="111308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113865" g_stop="113811" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="557" r_length="502" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="639" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111608" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="640" r_stop="817" r_length="178" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E692972" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E692972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113865" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTG</genome_strand>
        <mrna_strand>CGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCCATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCGTAA---TCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTATGTCTTTGCATGAACTTAATCAGTATCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326583" ref_strand="+" ref_description="SGN-E326583 [cTOC-17-L2]">
      <seq>gccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaaggcccttccttacatctgcttangaaatttgagtgtcataatcttctcagaatagcacatttagttttctagtctgttgaatggaaaacttgtactttgatttctgtctttgcatgaacttgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114137" stop="111319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113837" g_stop="113811" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="529" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="611" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111619" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="780" r_length="169" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E326583" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113837" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCA</genome_strand>
        <mrna_strand>GCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGCCCTTCCTTACATCTGCTTANGAAATTTGAGTGTCATAATCTTCTCAG-AATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAAAACTTGTACTTTGATTTCTGTCTTTGCATGAACTTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344656" ref_strand="+" ref_description="SGN-E344656 [cTOF-14-N19]">
      <seq>cgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttangaaattgaagtgtcataatcttctcagaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctgtctttgcatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111627" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="792" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E344656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAA</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTANGAAATTGAAGTGTCATAATCTTCTCAG-AATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706180" ref_strand="+" ref_description="SGN-E706180 [FA29BA02]">
      <seq>cgctcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaagaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaatttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113859" g_stop="113811" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="551" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="633" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111639" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="783" r_length="150" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E706180" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113859" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTG</genome_strand>
        <mrna_strand>CGCTCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAAGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261902" ref_strand="+" ref_description="SGN-E261902 [cLEG-61-L6]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaangaaattgaagtgtcataatcttctcagaatagcacatttagttttctagtctgttgaatggaactttgtaacttgaatttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="111340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111640" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="779" r_length="149" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E261902" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTT-AGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCT</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAANGAAATTGAAGTGTCATAATCTTCTCAG-AATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTAACTTGAATTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320384" ref_strand="+" ref_description="SGN-E320384 [cTOB-22-G8]">
      <seq>gggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctgggaggggcttccttacatctgcttaagaaaatgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgttacttgaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113186" stop="111342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112628" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="261" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112627" i_stop="112498" i_length="130">
            <donor d_prob="0.429" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112497" g_stop="112380" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="379" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="461" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111642" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="608" r_length="147" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E320384" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112628"/>
          <exon e_start="112497" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTT</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGG..................................................................................................................................GTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGGAGGGGCTTCCTTACATCTGCTTAAGAAAATGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724037" ref_strand="+" ref_description="SGN-E724037 [FC22DE05]">
      <seq>tagacaattgtccatccgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaaatagcacatttagttttctagtctgttgaatggaactttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114173" stop="111352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113873" g_stop="113811" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="565" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="647" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111652" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="784" r_length="137" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E724037" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113873" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTT</genome_strand>
        <mrna_strand>TAGACAATTGTCCATCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342772" ref_strand="+" ref_description="SGN-E342772 [cTOF-7-I22]">
      <seq>cgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttangaaattgaagtgtcataatcttctcagaatagcacatttagttttctagtctgttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111664" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="754" r_length="123" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E342772" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAA</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGC-ACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTANGAAATTGAAGTGTCATAATCTTCTCAG-AATAGCACATTTAGTTTTCTAGTCTGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261904" ref_strand="+" ref_description="SGN-E261904 [cLEG-61-L22]">
      <seq>agatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcactncaacctggaagggccttccttacatctgcttangaaattgaagtgtcataatcttctcagaatagcacatttagttttctagtctgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114154" stop="111366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113854" g_stop="113811" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="546" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="628" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111666" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="750" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E261904" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261904" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113854" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTG</genome_strand>
        <mrna_strand>AGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACTNCAACCTGGAAGGGCCTTCCTTACATCTGCTTANGAAATTGAAGTGTCATAATCTTCTCAG-AATAGCACATTTAGTTTTCTAGTCTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390782" ref_strand="-" ref_description="SGN-E390782 [TUS-44-C17](-)">
      <seq>cgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttaggaaattgaagtgtcataatcttctcagaattagcacatttagttttctagtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111669" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="751" r_length="120" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E390782" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390782" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTG</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAATTAGCACATTTAGTTTTCTAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327785" ref_strand="+" ref_description="SGN-E327785 [cTOC-20-H9]">
      <seq>ctcgtgccgccgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcaacctgggaaggccttccttacatctgcttangaaatttgagtgtcataatcttctcagaatagcacattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114159" stop="111382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113867" g_stop="113811" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="559" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="641" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111682" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="642" r_stop="747" r_length="106" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E327785" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113867" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTA</genome_strand>
        <mrna_strand>CTCGTGCCGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGGAAGGCCTTCCTTACATCTGCTTANGAAATTTGAGTGTCATAATCTTCTCAG-AATAGCACATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320473" ref_strand="+" ref_description="SGN-E320473 [cTOB-22-J18]">
      <seq>aattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaataaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaacggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatacactccaaactggtatgaagggagcttttggtaagccccagagtgtttgtgctcgtgttgcaattgagcaagttcatctatctgttcgctgcagagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagagagtggggattcaccaagctcagccgaactgattatctgacataccagtcagagaaccgtattctaccagaatgtgtgaatgcaaagcttcttggcaaccatggtcgacttgctgcacgtcagactggaacggccttccttacatctgcttanngcaattgagtgtcataatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114149" stop="96715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113849" g_stop="113811" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="541" r_length="502" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.971" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="623" r_length="82" r_score="0.939"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111700" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="712" r_length="89" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E320473" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113849" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTA-GGAAATTGAAGTGTCATAATCTTC</genome_strand>
        <mrna_strand>AATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAATAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAACGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATACACTCCAAACTGGTATGAAGGGAGCTTTTGGTAAGCCCCAGAGTGTTTGTGCTCGTGTTGCAATTGAGCAAGTTCATCTATCTGTTCGCTGCAGAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAGAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGCTCAGCCGAACTGATTATCTGACATACCAGTCAGAGAACCGTATTCTACCAGAATGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAGACTGGAACGGCCTTCCTTACATCTGCTTANNGCAATTG-AGTGTCATAATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343643" ref_strand="+" ref_description="SGN-E343643 [cTOF-20-F14]">
      <seq>atcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctacagatggtgtgaatgcaaagcttcttggcaccatggtcgacttgctgcacgtcaacctggaagggccttccttacatctgcttagaaattgaagtgtcataatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114152" stop="111401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113852" g_stop="113811" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="544" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="625" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111701" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="711" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E343643" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113852" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTT</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTA-CAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGC-ACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTA-GAAATTGAAGTGTCATAATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342033" ref_strand="+" ref_description="SGN-E342033 [cTOF-10-F1]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgncaagcttcttggcaaccatggtcgacttgctgcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="96771"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="630" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111756" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="631" r_stop="663" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E342033" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTGCACGT</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGNCAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTGCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343839" ref_strand="+" ref_description="SGN-E343839 [cTOF-12-K10]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagaatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="96776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="631" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111761" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="659" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E343839" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAG-ATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGCTG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGAATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E714387" ref_strand="+" ref_description="SGN-E714387 [FB11BC03]">
      <seq>cgcagatcaattgccgtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacatgtcagagaaccgtattctaccagatggtgtgaatgcaaagcttcttggcaaccatggtcgacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="96778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.998"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="631" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="111788" g_stop="111763" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="657" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E714387" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
          <exon e_start="111788" e_stop="111763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAGGTTTGTCTATTCATATCCTTCTTTTTGCTTTGCTCGGCCTGTAGCTATTTGTAATTTTTGGTTGTGACAACTTCTTGTGTGGTGTTTTGCTTGTGCAGCTTCTTGGCAACCATGGTCGACTTGC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCCGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACATGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG..................................................................................................CTTCTTGGCAACCATGGTCGACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323239" ref_strand="+" ref_description="SGN-E323239 [cTOB-28-K12]">
      <seq>cagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctnngaatacagtcagagaaccgtattctaccagatggtgtgaatgcaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114155" stop="96928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113855" g_stop="113811" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="547" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="629" r_length="82" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E323239" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113855" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGA-AATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG</genome_strand>
        <mrna_strand>CAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTNNGAATAC-AGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265188" ref_strand="+" ref_description="SGN-E265188 [cLEI-2-F3]">
      <seq>caaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattctaccagatggtgtgaatgcaaagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113139" stop="111584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112839" g_stop="112380" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111887" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="542" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E265188" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112839" e_stop="112380"/>
          <exon e_start="111968" e_stop="111887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG</genome_strand>
        <mrna_strand>CAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320953" ref_strand="+" ref_description="SGN-E320953 [cTOB-13-I2]">
      <seq>gaggcaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagagaaccgtattcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114133" stop="111608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113837" g_stop="113811" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="529" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111908" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="590" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E320953" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113837" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTA</genome_strand>
        <mrna_strand>GAGGCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E270301" ref_strand="+" ref_description="SGN-E270301 [cLEM-1-P11]">
      <seq>ctcgtgccgattcggcacgaggcaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggggttcactaagttcagccgtaccgattatctgaaatacaaatccgagaatcgtattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="111609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="555" r_length="502" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111909" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="615" r_length="60" r_score="0.867"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E270301" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCT</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTCACTAAGTTCAGCCGTACCGATTATCTGAAATACAAATCCGAGAATCGTATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342755" ref_strand="+" ref_description="SGN-E342755 [cTOF-7-E2]">
      <seq>ctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggggttcactaagttcagccgtaccgattatctgaaatacaaatccgagaatcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="111611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="537" r_length="502" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111911" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="595" r_length="58" r_score="0.879"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E342755" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATT</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTCACTAAGTTCAGCCGTACCGATTATCTGAAATACAAATCCGAGAATCGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292136" ref_strand="+" ref_description="SGN-E292136 [cLET-1-M19]">
      <seq>gcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggggttcactaagttcagccgtaccgattatctgaaatacaaatccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="111620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="539" r_length="502" r_score="0.904"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.86"/>
            <acceptor a_prob="0.971" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="588" r_length="49" r_score="0.878"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E292136" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAG</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTCACTAAGTTCAGCCGTACCGATTATCTGAAATACAAATCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209178" ref_strand="+" ref_description="SGN-E209178 [cLEC-38-N17]">
      <seq>tgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtcagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113111" stop="111620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112811" g_stop="112380" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111920" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="481" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E209178" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112811" e_stop="112380"/>
          <exon e_start="111968" e_stop="111920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAG</genome_strand>
        <mrna_strand>TGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443528" ref_strand="+" ref_description="SGN-E443528 [cSTA-38-D10]">
      <seq>cgcagatcaattgcagtgacgccacaatcgaatagccatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtgcctgatccaaagatcaggatttatgatgtgggcatgaagagaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgctgggaaggatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgcccaagaggctctgcgccgtgccaagttcaagtttcctgtacgtcaaaagatcattgtcagcagaaagtggggattcactaagttcagccgtactgattatctgaaatacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="111624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="549" r_length="502" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111924" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="594" r_length="45" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E443528" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCACAATCGAATAGCCATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTGCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAGAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCTGGGAAGGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGTACGTCAAAAGATCATTGTCAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACTAAGTTCAGCCGTACTGATTATCTGAAATACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293662" ref_strand="+" ref_description="SGN-E293662 [cLET-21-G9]">
      <seq>cagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114155" stop="111624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113855" g_stop="113811" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="547" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111924" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="592" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E293662" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113855" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTC</genome_strand>
        <mrna_strand>CAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312214" ref_strand="+" ref_description="SGN-E312214 [cTOA-5-E13]">
      <seq>ccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114134" stop="111624"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113834" g_stop="113811" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="526" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111924" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="571" r_length="45" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E312214" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312214" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113834" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTC</genome_strand>
        <mrna_strand>CCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231585" ref_strand="+" ref_description="SGN-E231585 [cLED-4-L10]">
      <seq>gtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcctgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttccctgacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaatacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114142" stop="111625"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113842" g_stop="113811" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="534" r_length="502" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111925" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="578" r_length="44" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E231585" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113842" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111925"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGT</genome_strand>
        <mrna_strand>GTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCCTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCCTGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E718108" ref_strand="+" ref_description="SGN-E718108 [FC03CH07]">
      <seq>aaagggagttgatgagttccctttctgtgtgcctttggtcagttgggacaaggagaatgtctcaagtgaggcacttgaacctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcccctaagggtcagggttcatccattccatgttttgagaattaacaaaatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttccaattggtcaggttcttctatctgttcgctgcaaagatggaaacagcaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcaaaaagaggggattcaccaagttcagccgaactgattatctgaaataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113072" stop="111628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112772" g_stop="112380" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111928" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="434" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E718108" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718108" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112772" e_stop="112380"/>
          <exon e_start="111968" e_stop="111928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACA</genome_strand>
        <mrna_strand>AAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCCTTTGGTCAGTTGGGACAAGGAGAATGTCTCAAGTGAGGCACTTGAACCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCCCCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAAATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTCCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGCAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAAAAAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312087" ref_strand="+" ref_description="SGN-E312087 [cTOA-11-K14]">
      <seq>ccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114134" stop="111631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113834" g_stop="113811" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="526" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111931" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="564" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E312087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113834" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAAT</genome_strand>
        <mrna_strand>CCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321169" ref_strand="+" ref_description="SGN-E321169 [cTOB-13-L19]">
      <seq>tggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccaaggtgtttgtgctcgtgttgcaattggtcaagttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaagctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113186" stop="111631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="511" r_length="502" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111968" g_stop="111931" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="549" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E321169" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321169" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAAT</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAAGGTGTTTGTGCTCGTGTTGCAATTGGTCAAGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAAGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259905" ref_strand="+" ref_description="SGN-E259905 [cLEG-51-I15]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagttcagccgaactgattatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="111633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111968" g_stop="111933" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="584" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E259905" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
          <exon e_start="111968" e_stop="111933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTGGTATGTATTCTATCAGAAGTTTCACTTTGTATTTTATGCTACTGATTTGTATGAGAACTTTGTACTTTTTCTATTAAAGGATTATCCTGCTGTGTAAAAAGTGCTTTTTTTCATTTAATTAGTTATTTTGTTTGTGAAGATTTTTTTATTCTAAAAGAACACCCTACAGTAAATTACACAAGTTTCTTCCTTCCAATGCCAGAAGTTGTCTTATTTCACTACGGAAAAATGAACTCTGGGCTTGTTTTCCATCCGAGACTCCTAAAGTTTCATGATATCTTGTTTTTTTTTTGTCTTCTCATTCCGCAATCTAGCCTACCCATTGAGGCTATCTTTGGTCATGCATTATTTTCGTTGTTTTAGATAGTTAGAAACTTGTCCTTGAATCTCACGTGTGCTACTTCAATTCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAA</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E296571" ref_strand="+" ref_description="SGN-E296571 [cLET-39-C13]">
      <seq>taagccgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaagctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114162" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113862" g_stop="113811" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="554" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E296571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113862" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>TAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAAGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254135" ref_strand="+" ref_description="SGN-E254135 [cLEG-34-K5]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="548" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E254135" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254135" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259626" ref_strand="+" ref_description="SGN-E259626 [cLEG-42-I19]">
      <seq>agatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114154" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113854" g_stop="113811" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="546" r_length="502" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E259626" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113854" e_stop="113811"/>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>AGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291204" ref_strand="+" ref_description="SGN-E291204 [cLET-2-K13]">
      <seq>aagccgccgcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccatatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="547" r_length="502" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E291204" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCATATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203022" ref_strand="+" ref_description="SGN-E203022 [cLEB-1-L22]">
      <seq>gcacgaggcctaacaatcccaaagagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggggttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="546" r_length="502" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E203022" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339715" ref_strand="+" ref_description="SGN-E339715 [cTOE-16-G18]">
      <seq>gagaatcagcgatgggtcgaagacctgcaaggtgttaccgccagattaagaacaagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcagggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcagaaagtgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113188" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="523" r_length="502" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E339715" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>GACCTGCAAGGTGTTACCGCCAGATTAAGAACAAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAGGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254561" ref_strand="+" ref_description="SGN-E254561 [cLEG-29-J9]">
      <seq>tcccccgggctgcagggcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttggcgtggtgtccctgatgccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcaccaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113176" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112380" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="514" r_length="503" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E254561" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGAT-CCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>GCAGGGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGGCGTGGTGTCCCTGATGCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255730" ref_strand="+" ref_description="SGN-E255730 [cLEG-36-N11]">
      <seq>aagccttatccaaaatcacggttttgccgtggtgtcccagatccaaagatcaggatctatgatgtgggtatgaagaaaaagggagttgatgaatttcctttctgtgtgcacttggtcagttgggagaaggagaatgtttcaagtgaggcacttgaagctgctcgtattgcttgcaacaagtacatgaccaagtctgcaggaaaggatgctttccacctcaaggttagggtccatcccttccatgttttgcgaattaacaagatgttgtcatgtgctggggctgataggctccaaactggtatgagaggagctttcggtaagccacagggagtctgtgcccgtgttgctattggtcaggttcttctctcggttcggtgcaaagatggcaatgctaaccatgctcaagaggctcttcgccgtgctaagtttaagtttcctggccgacaaaagattattgtcagcaaaaagtgggggttcactaagttcagccgtaccgattatctgaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113149" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112849" g_stop="112380" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E255730" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112849" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>AAGCCTTATCCAAAATCACGGTTTTGCCGTGGTGTCCCAGATCCAAAGATCAGGATCTATGATGTGGGTATGAAGAAAAAGGGAGTTGATGAATTTCCTTTCTGTGTGCACTTGGTCAGTTGGGAGAAGGAGAATGTTTCAAGTGAGGCACTTGAAGCTGCTCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCAGGAAAGGATGCTTTCCACCTCAAGGTTAGGGTCCATCCCTTCCATGTTTTGCGAATTAACAAGATGTTGTCATGTGCTGGGGCTGATAGGCTCCAAACTGGTATGAGAGGAGCTTTCGGTAAGCCACAGGGAGTCTGTGCCCGTGTTGCTATTGGTCAGGTTCTTCTCTCGGTTCGGTGCAAAGATGGCAATGCTAACCATGCTCAAGAGGCTCTTCGCCGTGCTAAGTTTAAGTTTCCTGGCCGACAAAAGATTATTGTCAGCAAAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242750" ref_strand="+" ref_description="SGN-E242750 [cLED-31-G8]">
      <seq>caaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaaagatcattgtgagcagaaagtggggattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113139" stop="112079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112839" g_stop="112380" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E242750" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112839" e_stop="112380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</genome_strand>
        <mrna_strand>CAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724184" ref_strand="+" ref_description="SGN-E724184 [FC23BD01]">
      <seq>gacgccccaattgaatacccctggaaagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccggggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggaaaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaaaatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagtttcctggacgtcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114140" stop="112102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113840" g_stop="113811" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.833"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112402" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="510" r_length="480" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E724184" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113840" e_stop="113811"/>
          <exon e_start="112881" e_stop="112402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAA</genome_strand>
        <mrna_strand>GACGCCCCAATTGAATACCCCTGGAAAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGGGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAAAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAAATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E265423" ref_strand="+" ref_description="SGN-E265423 [cLEI-9-O18]">
      <seq>ccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgtggcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaaccatgctcaagaggctctccgccgtgccaaattcaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114134" stop="112117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113834" g_stop="113811" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112417" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="489" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E265423" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113834" e_stop="113811"/>
          <exon e_start="112881" e_stop="112417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGT</genome_strand>
        <mrna_strand>CCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTGGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326980" ref_strand="+" ref_description="SGN-E326980 [cTOC-18-G9]">
      <seq>gacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatgggaacagtaaccatgctcaagaggctctccgccgtgccaaattcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114140" stop="112118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113840" g_stop="113811" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112418" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="494" r_length="464" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E326980" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E326980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113840" e_stop="113811"/>
          <exon e_start="112881" e_stop="112418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAG</genome_strand>
        <mrna_strand>GACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGGAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E327651" ref_strand="+" ref_description="SGN-E327651 [cTOC-20-H2]">
      <seq>gccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggtcaggttcttctatctgttcgctgcaaagatggaaacagtaacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114137" stop="112152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113837" g_stop="113811" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112452" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="457" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E327651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113837" e_stop="113811"/>
          <exon e_start="112881" e_stop="112452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCA</genome_strand>
        <mrna_strand>GCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312606" ref_strand="+" ref_description="SGN-E312606 [cLEZ-20-F3]">
      <seq>ctatggggagaagaccagcaagaggtttttgtcggattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtgagccccagggtgtttgtgctcgtgttgcaattggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113186" stop="112195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112495" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="399" r_length="387" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E312606" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTC</genome_strand>
        <mrna_strand>GACCAGCAAGAGGTTTTTGTCGGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTGAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361955" ref_strand="+" ref_description="SGN-E361955 [cLPP-11-C14]">
      <seq>gaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaaatacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgcgaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtgttgcaattggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113186" stop="112196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112881" g_stop="112496" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="389" r_length="386" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E361955" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112881" e_stop="112496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGT</genome_strand>
        <mrna_strand>GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAATACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312609" ref_strand="+" ref_description="SGN-E312609 [cLEZ-20-F15]">
      <seq>gattaagaacaagccttacccataatcaaggtattgccgtggtgtccctgatccaaagatcatgatttatgacgtgggcatgaagaaaaagggagtcgatgagttccctttctgtgtgcatttggtcagtcgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccttgaaagatgcttttcacctaatggtcagggatcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccacggtgtatgtgctcgtgttgcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113159" stop="112198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112859" g_stop="112498" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E312609" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112859" e_stop="112498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTG</genome_strand>
        <mrna_strand>GATTAAGAACAAGCCTTACCCATAATCAAGGTATTGCCGTGGTGTCCCTGATCCAAAGATCATGATTTATGACGTGGGCATGAAGAAAAAGGGAGTCGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTCGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCTTGAAAGATGCTTTTCACCTAATGGTCAGGGATCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCACGGTGTATGTGCTCGTGTTGCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E294382" ref_strand="+" ref_description="SGN-E294382 [cLET-14-I13]">
      <seq>tgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaatggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagccccagggtgtttgtgctcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114146" stop="112207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113846" g_stop="113811" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112507" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="411" r_length="375" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E294382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113846" e_stop="113811"/>
          <exon e_start="112881" e_stop="112507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTG</genome_strand>
        <mrna_strand>TGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAATGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306592" ref_strand="+" ref_description="SGN-E306592 [cLEX-13-N8]">
      <seq>cgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagcttttggtaagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114157" stop="112227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113857" g_stop="113811" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112527" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="402" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E306592" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113857" e_stop="113811"/>
          <exon e_start="112881" e_stop="112527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCC</genome_strand>
        <mrna_strand>CGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242972" ref_strand="+" ref_description="SGN-E242972 [cLED-31-F24]">
      <seq>gtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacntgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcctgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagctgatagactccaaactggtatgaggggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114142" stop="112239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113842" g_stop="113811" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112539" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="375" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E242972" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113842" e_stop="113811"/>
          <exon e_start="112881" e_stop="112539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGC</genome_strand>
        <mrna_strand>GTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACNTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCCTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277881" ref_strand="-" ref_description="SGN-E277881 [cLEL-5-D23](-)">
      <seq>gcacgagcgcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgagaattaacaagatgttgtcgtgtgctggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114160" stop="112269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113852" g_stop="113811" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="54" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112569" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="367" r_length="313" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E277881" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113852" e_stop="113811"/>
          <exon e_start="112881" e_stop="112569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGC</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257096" ref_strand="+" ref_description="SGN-E257096 [cLEG-44-B16]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcctcagattaagaacaagccttacccaaaatcaaggttttgtcgtggtgtccctgatccacagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcacacaagtacatgaccgagtctgccgggaaagatgcttttcacctaaaggatagggctcatccattccatgttttgagaattaacacgatgttgtcgagtgctggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="112270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112570" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="359" r_length="313" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E257096" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCA-ACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAG</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCCTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGTCGTGGTGTCCCTGATCCACAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCACACAAGTACATGACCGAGTCTGCCGGGAAAGATGCTTTTCACCTAAAGGATAGGGCTCATCCATTCCATGTTTTGAGAATTAACACGATGTTGTCGAGTGCTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242855" ref_strand="+" ref_description="SGN-E242855 [cLED-31-A1]">
      <seq>gcagatcaattgcagtgacgccccaattgaatagctatggggagaagacctgcaagatgttatcgtcagattaagaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatgtctcaagtgaggcacttgaagctgcccgtattgcttgcaacaagtacatgaccaagtctgccgggaaagatgcttttcacctaagggtcagggttcatccattccatgttttgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114156" stop="112298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113856" g_stop="113811" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112598" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="330" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E242855" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>330</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113856" e_stop="113811"/>
          <exon e_start="112881" e_stop="112598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGA</genome_strand>
        <mrna_strand>GCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280829" ref_strand="-" ref_description="SGN-E280829 [cLEL-6-F6](-)">
      <seq>gcacgagatcaattgcagtgacgtttcagttgaatcgctatcgtgagaagacctgcaggatgttatcgtcagacccagaacaggccttacccaatatcaaggctatgccgtggtgtccctgatccaacgatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagtgccctttctgcgtgcatttggtcagttggcagaaggagaatgtctcaagtgaggcacttgaagctgaccgtattgcttgctacaagtacatgaccaagtctggcggtaaagatgcttttcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114159" stop="112333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113859" g_stop="113811" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.796"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.80"/>
            <acceptor a_prob="0.998" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112633" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="298" r_length="249" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E280829" ref_strand="-">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280829" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113859" e_stop="113811"/>
          <exon e_start="112881" e_stop="112633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACC</genome_strand>
        <mrna_strand>GCACGAGATCAATTGCAGTGACGTTTCAGTTGAATCGCTATCGTGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTGCAGGATGTTATCGTCAGACCCAGAACAGGCCTTACCCAATATCAAGGCTATGCCGTGGTGTCCCTGATCCAACGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTGCCCTTTCTGCGTGCATTTGGTCAGTTGGCAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGACCGTATTGCTTGCTACAAGTACATGACCAAGTCTGGCGGTAAAGATGCTTTTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280752" ref_strand="-" ref_description="SGN-E280752 [cLEL-6-G5](-)">
      <seq>ccaaagaattcggcacgagatcaattgcagtgacttcttaattgaatagctatggggagaagacgtgtaagatgttatcgtcagatcaacaacaagccttacccaaaatcaaggttttgccgtggtgtccctgatccaaagatcaggatttatgacgtgggcatgaagaaaaagggagttgatgagttccctttctgtgtgcatttggtcagttgggagaaggagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0014B21-eDcbK/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLe0014B21.1" temp_strand="-" temp_description="C06SLe0014B21.1  AC216656.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0014B21 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114163" stop="112414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113852" g_stop="113811" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="61" r_length="42" r_score="0.905"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112881" g_stop="112714" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="229" r_length="168" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0014B21.1" gen_strand="-" ref_id="SGN-E280752" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0014B21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E280752" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="113852" e_stop="113811"/>
          <exon e_start="112881" e_stop="112714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAAGTAAGTTGCTTAGCTTAAATCCTTATTTATCAAATTTAATTTGTATTATTATAATGTATTGTTCCTCAGATCTGGAAAAAAAATTGAGCTTTTTACGCCATTGACGGATTCATTGGTATTTATATGATTGGATTTGTGTACCATGATTTATGTGAATATTGTTTTTTTTTAAAAAAAAAAAGTTTGCTGCGTGAAGTCCTGTATAATTATTATGCGAATGTGGTGTTTATTTGACATCGAGTAGTTTTGTTATATGTTTGTTTGTTAGTGTATTTGATTGTAAAACTAGTTTGTTTGGAATTTGGATTATTTAATTGATTCTGTTAGATTTTTCTAGCTCTTAAATGTTTGGAATCAGCTCTTAAATGTTTGGAATTTGCCGTTCTATGTTAAGCTAATGGATTTGAGCTAATACATTAAAAATGATACCTGTCCTGGTAAAACGGGTAGCTTCAAGATTGAAGTATGTGGCATTTTCTGTAGTATTTTAGGCACATTTGCTCGCGAATCTAGTTTTTTTGTTACCAACCAAGATACAAAGGATAAACATTGTCTTTGTAAGAATATTATTTGCTTGGAAAATGGAAGGAAGAGTTCCTCGTTTTGTGTCAGCGAAACATCTTTTCTTTATGTGTATGAGAATGGAAGTACTTACTAAAATTACGTATGAATTATGACTTGATAAGTTGTTTATGGTTTATCTAAGATAGGTGACGAGTAGAATTGTTAATATGTGTATGGAAAAGCATATTCGAGTTCTTGCACCACTAGTTGTATCCTGCTTAAGTTCCAGTCATGACATAGCTAGTCTAAGCATATGTTGTATTGTAATGATTTTTTATATTGCGCTCTGAGTCATTGTGTTTGTCTTCCCTAGCTCATTTTCATCTTTATGCCTTTGGTGTAATGGTTTGAATTATTTTTGACAGGACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATG</genome_strand>
        <mrna_strand>ATCAATTGCAGTGACTTCTTAATTGAATAGCTATGGGGAGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGTGTAAGATGTTATCGTCAGATCAACAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>641</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7603" PGL_stop="8437"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7603" e_stop="8437"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="7603" e_stop="8437" e_length="835"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7603" stop="8159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8050" stop="8437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698889" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGACTTGTTGAAGTGAGGAAAGAGCTTGATGATTCGAGGGACAAACTCCAGCCTTTGATGATGAGGTATAACAAGGAGAAGGAACGGATTGATGAGCTTCGAAGGCTTAAGCAAAAGCGCGATGCACTGACCTATGCTTTACAAGACGCTGAAAGGAGATATGATCTTGCCAGAGCAGCAGATCTTAGATATGGTGCCATCCAAGATGTGGAAGCTGCAATAGCCAATCTTGAGAGTAGCACAGATGAGAGTAGAATGTTAACAGAGACTGTTGGACCCGATCAGATTGCGGAAGTAGTTAGTCGCTGGACTGGAATTCCTGTCTCTAGGCTTGGGCAGAATGAGAAGGAGAAATTGATTGGTCTTGCTGATAGATTGCACCAAAGAGTTGTGGGGCAAGATGAAGCTGTAAAAGCTGTTACTGAGGCTGTGTTGAGGTCTAGAGCTGGATTAGGAAGGCCACAACAACCAACTGGTTCATTCCTTTTCTTGGGGCCAACTGGTGTTGGAAAGACAGAACTTGCTAAAGCTCTTGCTGAGCAGCTCTTTGATGATGACAAATTGATGGTCAGAATCGACATGTCCGAATACATGGAGCAACATTCTGTTGCCAGGTTGATTGGGGCTCCACCAGGTTATGTCGGACATGAGGAAGGAGGACAACTTACCAAAGCTGTAAGGAGGCGACCTTACAGTGTTGTGCTTTTCGACGAAGTTGAAAAAGCTCATCCAACTGTGTTTAATGCCTTGCTTCAAGTGTTGGATGATGGTAGATTAACTGATGGTCAAGGTCGTACTGTTGATTTCACCAACACTGTGATCATTATGACCTCA</gDNA_template>
            <first_frame> S  T  C  *  S  E  E  R  A  *  *  F  E  G  Q  T  P  A  F  D  D  E  V  *  Q  G  E  G  T  D  *  *  A  S  K  A  *  A  K  A  R  C  T  D  L  C  F  T  R  R  *  K  E  I  *  S  C  Q  S  S  R  S  *  I  W  C  H  P  R  C  G  S  C  N  S  Q  S  *  E  *  H  R  *  E  *  N  V  N  R  D  C  W  T  R  S  D  C  G  S  S  *  S  L  D  W  N  S  C  L  *  A  W  A  E  *  E  G  E  I  D  W  S  C  *  *  I  A  P  K  S  C  G  A  R  *  S  C  K  S  C  Y  *  G  C  V  E  V  *  S  W  I  R  K  A  T  T  T  N  W  F  I  P  F  L  G  A  N  W  C  W  K  D  R  T  C  *  S  S  C  *  A  A  L  *  *  *  Q  I  D  G  Q  N  R  H  V  R  I  H  G  A  T  F  C  C  Q  V  D  W  G  S  T  R  L  C  R  T  *  G  R  R  T  T  Y  Q  S  C  K  E  A  T  L  Q  C  C  A  F  R  R  S  *  K  S  S  S  N  C  V  *  C  L  A  S  S  V  G  *  W  *  I  N  *  W  S  R  S  Y  C  *  F  H  Q  H  C  D  H  Y  D  L  </first_frame>
            <second_frame>  R  L  V  E  V  R  K  E  L  D  D  S  R  D  K  L  Q  P  L  M  M  R  Y  N  K  E  K  E  R  I  D  E  L  R  R  L  K  Q  K  R  D  A  L  T  Y  A  L  Q  D  A  E  R  R  Y  D  L  A  R  A  A  D  L  R  Y  G  A  I  Q  D  V  E  A  A  I  A  N  L  E  S  S  T  D  E  S  R  M  L  T  E  T  V  G  P  D  Q  I  A  E  V  V  S  R  W  T  G  I  P  V  S  R  L  G  Q  N  E  K  E  K  L  I  G  L  A  D  R  L  H  Q  R  V  V  G  Q  D  E  A  V  K  A  V  T  E  A  V  L  R  S  R  A  G  L  G  R  P  Q  Q  P  T  G  S  F  L  F  L  G  P  T  G  V  G  K  T  E  L  A  K  A  L  A  E  Q  L  F  D  D  D  K  L  M  V  R  I  D  M  S  E  Y  M  E  Q  H  S  V  A  R  L  I  G  A  P  P  G  Y  V  G  H  E  E  G  G  Q  L  T  K  A  V  R  R  R  P  Y  S  V  V  L  F  D  E  V  E  K  A  H  P  T  V  F  N  A  L  L  Q  V  L  D  D  G  R  L  T  D  G  Q  G  R  T  V  D  F  T  N  T  V  I  I  M  T  S </second_frame>
            <third_frame>   D  L  L  K  *  G  K  S  L  M  I  R  G  T  N  S  S  L  *  *  *  G  I  T  R  R  R  N  G  L  M  S  F  E  G  L  S  K  S  A  M  H  *  P  M  L  Y  K  T  L  K  G  D  M  I  L  P  E  Q  Q  I  L  D  M  V  P  S  K  M  W  K  L  Q  *  P  I  L  R  V  A  Q  M  R  V  E  C  *  Q  R  L  L  D  P  I  R  L  R  K  *  L  V  A  G  L  E  F  L  S  L  G  L  G  R  M  R  R  R  N  *  L  V  L  L  I  D  C  T  K  E  L  W  G  K  M  K  L  *  K  L  L  L  R  L  C  *  G  L  E  L  D  *  E  G  H  N  N  Q  L  V  H  S  F  S  W  G  Q  L  V  L  E  R  Q  N  L  L  K  L  L  L  S  S  S  L  M  M  T  N  *  W  S  E  S  T  C  P  N  T  W  S  N  I  L  L  P  G  *  L  G  L  H  Q  V  M  S  D  M  R  K  E  D  N  L  P  K  L  *  G  G  D  L  T  V  L  C  F  S  T  K  L  K  K  L  I  Q  L  C  L  M  P  C  F  K  C  W  M  M  V  D  *  L  M  V  K  V  V  L  L  I  S  P  T  L  *  S  L  *  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7604" stop="8437"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLVEVRKELDDSRDKLQPLMMRYNKEKERIDELRRLKQKRDALTYALQDAERRYDLARAADLRYGAIQDVEAAIANLESSTDESRMLTETVGPDQIAEVVSRWTGIPVSRLGQNEKEKLIGLADRLHQRVVGQDEAVKAVTEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDDKLMVRIDMSEYMEQHSVARLIGAPPGYVGHEEGGQLTKAVRRRPYSVVLFDEVEKAHPTVFNALLQVLDDGRLTDGQGRTVDFTNTVIIMTS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="8454" PGL_stop="7703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8454" e_stop="7703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.935">
            <gDNA_exon_boundary e_start="8454" e_stop="7703" e_length="752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8454" stop="7703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375601" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTCCGCTCCCAAATTTGAGGTCATAATGATCACAGTGTTGGTGAAATCAACAGTACGACCTTGACCATCAGTTAATCTACCATCATCCAACACTTGAAGCAAGGCATTAAACACAGTTGGATGAGCTTTTTCAACTTCGTCGAAAAGCACAACACTGTAAGGTCGCCTCCTTACAGCTTTGGTAAGTTGTCCTCCTTCCTCATGTCCGACATAACCTGGTGGAGCCCCAATCAACCTGGCAACAGAATGTTGCTCCATGTATTCGGACATGTCGATTCTGACCATCAATTTGTCATCATCAAAGAGCTGCTCAGCAAGAGCTTTAGCAAGTTCTGTCTTTCCAACACCAGTTGGCCCCAAGAAAAGGAATGAACCAGTTGGTTGTTGTGGCCTTCCTAATCCAGCTCTAGACCTCAACACAGCCTCAGTAACAGCTTTTACAGCTTCATCTTGCCCCACAACTCTTTGGTGCAATCTATCAGCAAGACCAATCAATTTCTCCTTCTCATTCTGCCCAAGCCTAGAGACAGGAATTCCAGTCCAGCGACTAACTACTTCCGCAATCTGATCGGGTCCAACAGTCTCTGTTAACATTCTACTCTCATCTGTGCTACTCTCAAGATTGGCTATTGCAGCTTCCACATCTTGGATGGCACCATATCTAAGATCTGCTGCTCTGGCAAGATCATATCTCCTTTCAGCGTCTTGTAAAGCATAGGTCAGTGCATCGCGCTTTTGCTTAAGCCTTCG</gDNA_template>
            <first_frame> Y  S  A  P  K  F  E  V  I  M  I  T  V  L  V  K  S  T  V  R  P  *  P  S  V  N  L  P  S  S  N  T  *  S  K  A  L  N  T  V  G  *  A  F  S  T  S  S  K  S  T  T  L  *  G  R  L  L  T  A  L  V  S  C  P  P  S  S  C  P  T  *  P  G  G  A  P  I  N  L  A  T  E  C  C  S  M  Y  S  D  M  S  I  L  T  I  N  L  S  S  S  K  S  C  S  A  R  A  L  A  S  S  V  F  P  T  P  V  G  P  K  K  R  N  E  P  V  G  C  C  G  L  P  N  P  A  L  D  L  N  T  A  S  V  T  A  F  T  A  S  S  C  P  T  T  L  W  C  N  L  S  A  R  P  I  N  F  S  F  S  F  C  P  S  L  E  T  G  I  P  V  Q  R  L  T  T  S  A  I  *  S  G  P  T  V  S  V  N  I  L  L  S  S  V  L  L  S  R  L  A  I  A  A  S  T  S  W  M  A  P  Y  L  R  S  A  A  L  A  R  S  Y  L  L  S  A  S  C  K  A  *  V  S  A  S  R  F  C  L  S  L   </first_frame>
            <second_frame>  I  P  L  P  N  L  R  S  *  *  S  Q  C  W  *  N  Q  Q  Y  D  L  D  H  Q  L  I  Y  H  H  P  T  L  E  A  R  H  *  T  Q  L  D  E  L  F  Q  L  R  R  K  A  Q  H  C  K  V  A  S  L  Q  L  W  *  V  V  L  L  P  H  V  R  H  N  L  V  E  P  Q  S  T  W  Q  Q  N  V  A  P  C  I  R  T  C  R  F  *  P  S  I  C  H  H  Q  R  A  A  Q  Q  E  L  *  Q  V  L  S  F  Q  H  Q  L  A  P  R  K  G  M  N  Q  L  V  V  V  A  F  L  I  Q  L  *  T  S  T  Q  P  Q  *  Q  L  L  Q  L  H  L  A  P  Q  L  F  G  A  I  Y  Q  Q  D  Q  S  I  S  P  S  H  S  A  Q  A  *  R  Q  E  F  Q  S  S  D  *  L  L  P  Q  S  D  R  V  Q  Q  S  L  L  T  F  Y  S  H  L  C  Y  S  Q  D  W  L  L  Q  L  P  H  L  G  W  H  H  I  *  D  L  L  L  W  Q  D  H  I  S  F  Q  R  L  V  K  H  R  S  V  H  R  A  F  A  *  A  F  </second_frame>
            <third_frame>   F  R  S  Q  I  *  G  H  N  D  H  S  V  G  E  I  N  S  T  T  L  T  I  S  *  S  T  I  I  Q  H  L  K  Q  G  I  K  H  S  W  M  S  F  F  N  F  V  E  K  H  N  T  V  R  S  P  P  Y  S  F  G  K  L  S  S  F  L  M  S  D  I  T  W  W  S  P  N  Q  P  G  N  R  M  L  L  H  V  F  G  H  V  D  S  D  H  Q  F  V  I  I  K  E  L  L  S  K  S  F  S  K  F  C  L  S  N  T  S  W  P  Q  E  K  E  *  T  S  W  L  L  W  P  S  *  S  S  S  R  P  Q  H  S  L  S  N  S  F  Y  S  F  I  L  P  H  N  S  L  V  Q  S  I  S  K  T  N  Q  F  L  L  L  I  L  P  K  P  R  D  R  N  S  S  P  A  T  N  Y  F  R  N  L  I  G  S  N  S  L  C  *  H  S  T  L  I  C  A  T  L  K  I  G  Y  C  S  F  H  I  L  D  G  T  I  S  K  I  C  C  S  G  K  I  I  S  P  F  S  V  L  *  S  I  G  Q  C  I  A  L  L  L  K  P  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8238" stop="7885"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>351</number_coding_nucleotides>
                  <number_encoded_amino_acids>117</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGGAPINLATECCSMYSDMSILTINLSSSKSCSARALASSVFPTPVGPKKRNEPVGCCGLPNPALDLNTASVTAFTASSCPTTLWCNLSARPINFSFSFCPSLETGIPVQRLTTSAI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8377" stop="8081"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STIIQHLKQGIKHSWMSFFNFVEKHNTVRSPPYSFGKLSSFLMSDITWWSPNQPGNRMLLHVFGHVDSDHQFVIIKELLSKSFSKFCLSNTSWPQEKE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10223" PGL_stop="9602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10223" e_stop="9602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="10223" e_stop="9602" e_length="622"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10223" stop="9602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375951" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTAATCATCACATCAAAGGAAAAATTAGTAAAATTCCAACTGTCATGTATAAGTGTAAGTTGGCGGAGTTCGTACAAGACTCAGATACACAGAGTGACAATGATTATGAAGGGTCTGATGATGAGTTGGAGGCTGAACTACGCGATATGATAGAGAAGCTTTACAAAGAGCTGGAAGGTGTTTCAAATCTGCAGGGTGAAACTTTGAGGCATGGGGAATTTAGTAATGTGAAAAAAGAATCGGTATCATCAAACTTGGAGATTCAGCCTGAAACTAGCAGAGGATTATATACAAATGAACCGTGCGAATCATTAGAGGAGGCTCTTATTCAAGCTAGAGCAGAGAAAATAGAAGCAGAGACTGAAGTTGAGCGACTAAAGGCAAGCATTGTCAAGAAGAACAATTATGTCCAAGAATTGAACAAAATCCTTGAAGCAGTAAAGGCAGAGAGAGATCAGTTGAAAGTCAGAGTTGCAATGCTTCATGATGACCCTGAGTCAGCAAAGCCTTTGCACCAAAATGATTAACCATGAGTAATGTGTTGATTTAATTTTGTTTTTTCAAATGAATGTCGTGAAGGTAGAGAAATTGTATCCGATAAATGAACATTATGAATCAT</gDNA_template>
            <first_frame> G  L  I  I  T  S  K  E  K  L  V  K  F  Q  L  S  C  I  S  V  S  W  R  S  S  Y  K  T  Q  I  H  R  V  T  M  I  M  K  G  L  M  M  S  W  R  L  N  Y  A  I  *  *  R  S  F  T  K  S  W  K  V  F  Q  I  C  R  V  K  L  *  G  M  G  N  L  V  M  *  K  K  N  R  Y  H  Q  T  W  R  F  S  L  K  L  A  E  D  Y  I  Q  M  N  R  A  N  H  *  R  R  L  L  F  K  L  E  Q  R  K  *  K  Q  R  L  K  L  S  D  *  R  Q  A  L  S  R  R  T  I  M  S  K  N  *  T  K  S  L  K  Q  *  R  Q  R  E  I  S  *  K  S  E  L  Q  C  F  M  M  T  L  S  Q  Q  S  L  C  T  K  M  I  N  H  E  *  C  V  D  L  I  L  F  F  Q  M  N  V  V  K  V  E  K  L  Y  P  I  N  E  H  Y  E  S  </first_frame>
            <second_frame>  D  *  S  S  H  Q  R  K  N  *  *  N  S  N  C  H  V  *  V  *  V  G  G  V  R  T  R  L  R  Y  T  E  *  Q  *  L  *  R  V  *  *  *  V  G  G  *  T  T  R  Y  D  R  E  A  L  Q  R  A  G  R  C  F  K  S  A  G  *  N  F  E  A  W  G  I  *  *  C  E  K  R  I  G  I  I  K  L  G  D  S  A  *  N  *  Q  R  I  I  Y  K  *  T  V  R  I  I  R  G  G  S  Y  S  S  *  S  R  E  N  R  S  R  D  *  S  *  A  T  K  G  K  H  C  Q  E  E  Q  L  C  P  R  I  E  Q  N  P  *  S  S  K  G  R  E  R  S  V  E  S  Q  S  C  N  A  S  *  *  P  *  V  S  K  A  F  A  P  K  *  L  T  M  S  N  V  L  I  *  F  C  F  F  K  *  M  S  *  R  *  R  N  C  I  R  *  M  N  I  M  N  H </second_frame>
            <third_frame>   I  N  H  H  I  K  G  K  I  S  K  I  P  T  V  M  Y  K  C  K  L  A  E  F  V  Q  D  S  D  T  Q  S  D  N  D  Y  E  G  S  D  D  E  L  E  A  E  L  R  D  M  I  E  K  L  Y  K  E  L  E  G  V  S  N  L  Q  G  E  T  L  R  H  G  E  F  S  N  V  K  K  E  S  V  S  S  N  L  E  I  Q  P  E  T  S  R  G  L  Y  T  N  E  P  C  E  S  L  E  E  A  L  I  Q  A  R  A  E  K  I  E  A  E  T  E  V  E  R  L  K  A  S  I  V  K  K  N  N  Y  V  Q  E  L  N  K  I  L  E  A  V  K  A  E  R  D  Q  L  K  V  R  V  A  M  L  H  D  D  P  E  S  A  K  P  L  H  Q  N  D  *  P  *  V  M  C  *  F  N  F  V  F  S  N  E  C  R  E  G  R  E  I  V  S  D  K  *  T  L  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10221" stop="9694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>525</number_coding_nucleotides>
                  <number_encoded_amino_acids>175</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INHHIKGKISKIPTVMYKCKLAEFVQDSDTQSDNDYEGSDDELEAELRDMIEKLYKELEGVSNLQGETLRHGEFSNVKKESVSSNLEIQPETSRGLYTNEPCESLEEALIQARAEKIEAETEVERLKASIVKKNNYVQELNKILEAVKAERDQLKVRVAMLHDDPESAKPLHQND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="13742" PGL_stop="23805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13742" e_stop="13799"/>
            <exon e_start="14563" e_stop="14615"/>
            <exon e_start="15572" e_stop="15680"/>
            <exon e_start="15885" e_stop="15937"/>
            <exon e_start="16383" e_stop="16437"/>
            <exon e_start="16514" e_stop="16602"/>
            <exon e_start="17104" e_stop="17249"/>
            <exon e_start="18262" e_stop="18404"/>
            <exon e_start="18564" e_stop="18649"/>
            <exon e_start="19313" e_stop="19601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13742" e_stop="13799" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14563" e_stop="14615" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15572" e_stop="15680" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15937" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16383" e_stop="16437" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16514" e_stop="16602" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17104" e_stop="17249" e_length="146"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18262" e_stop="18404" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18564" e_stop="18649" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19313" e_stop="19601" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13742" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13747" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13748" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13751" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13755" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14593" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15595" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15618" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16400" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587984" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18264" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18379" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19358" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGAGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG : ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT : ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG : TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG : GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG : ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG : CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC : GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA : ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG : TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTTATATTCAACT</gDNA_template>
            <first_frame> T  E  K  A  C  I  S  I  G  R  E  D  K  R  I  I  R  L  K   : D  L  S  A  I  M  A  E  E  E  N  Q  N  E  L  V  A  D  :  I  A  P  F  D  P  T  K  K  K  K  K  K  K  V  V  I  Q  D  P  A  D  D  S  V  D  S  L  A  E  K  T  E  N  L  S   : V  S  E  G  L  E  A  T  F  S  G  K  K  K  K  K  K  P  :  G  H  S  D  L  L  S  D  E  K  E  S  I  G  E  D  V  D   : D  Q  P  G  D  D  E  E  A  G  E  I  V  L  Q  Q  L  P  W  E  G  T  D  R  D  Y  E  Y  E  E  :  L  L  G  R  V  F  N  I  L  R  E  N  N  P  E  L  A  G  D  R  R  R  T  V  M  R  P  P  Q  V  L  R  E  G  T  K  K  T  V  F  V  N  F  M  D  L  C  K  T :   M  H  R  Q  P  E  H  V  M  T  F  L  L  A  E  M  G  T  S  G  S  L  D  G  Q  Q  R  L  V  I  K  G  R  F  A  P  K  N  F  E  G  I  L  R  R  Y  V   : N  E  Y  V  I  C  N  G  C  K  S  P  D  T  I  L  S  K  E  N  R  L  F  F  L  R  C  E  K  :  C  G  S  G  R  S  V  A  P  I  K  A  G  F  V  A  R  V  G  R  R  K  A  G  T  *  Y  I  R  L  G  D  *  I  S  C  H  N  R  V  R  W  S  F  V  C  F  A  L  C  L  T  *  G  D  I  L  K  F  G  A  T  L  L  M  K  K  V  G  L  D  L  L  C  W  D  M  L  S  C  L  F  L  *  N  V  A  Y  T  C  F  P  L  I  F  N  </first_frame>
            <second_frame>  Q  R  K  R  A  F  P  S  A  A  K  I  N  E  S  S  D  *  K  :  I  L  V  Q  S  W  L  K  K  R  I  K  T  S  W  *  L  I :   *  H  L  L  I  L  Q  K  R  R  K  R  R  R  L  *  F  K  I  R  Q  M  T  L  L  I  A  W  L  K  K  L  R  I  Y  L  :  F  L  R  A  L  R  L  R  F  L  V  K  R  K  R  R  S  R :   D  T  L  I  S  *  V  M  K  K  K  V  S  V  R  M  *  M  :  I  N  P  E  M  M  K  K  L  E  K  L  S  Y  N  S  Y  L  G  R  E  L  I  E  I  M  N  M  R  S :   F  W  A  E  Y  S  I  F  S  V  R  T  I  P  S  L  L  E  I  G  E  G  L  L  *  G  P  L  K  F  F  V  K  A  Q  R  K  L  C  L  *  I  S  W  I  F  A  R   : R  C  I  G  S  L  S  M  L  *  L  S  C  W  L  K  W  G  L  V  D  H  L  T  G  S  K  D  W  S  S  R  E  D  L  L  L  R  I  L  K  E  S  S  A  D  M  S  :  M  S  M  S  F  A  M  A  V  K  V  Q  I  L  S  F  Q  K  R  T  V  F  S  S  S  D  A  R  S :   V  A  L  E  D  Q  L  L  L  S  R  L  V  S  L  L  V  L  D  V  G  K  L  G  P  D  T  Y  G  L  G  I  E  Y  L  V  I  I  E  Y  V  G  V  L  Y  V  L  L  C  V  *  P  E  E  T  Y  *  S  L  V  R  L  C  L  *  R  K  L  V  *  I  Y  F  V  G  I  C  Y  L  V  Y  F  Y  K  M  W  L  I  L  V  F  L  L  Y  S  T </second_frame>
            <third_frame>   R  E  S  V  H  F  H  R  P  R  R  *  T  N  H  P  I  E  R :   S  *  C  N  H  G  *  R  R  E  S  K  R  V  G  S  *   : Y  S  T  F  *  S  Y  K  K  E  E  K  E  E  G  C  N  S  R  S  G  R  *  L  C  *  *  L  G  *  K  N  *  E  F  I  C :   F  *  G  P  *  G  Y  V  F  W  *  K  E  K  E  E  A   : G  T  L  *  S  P  E  *  *  K  R  K  Y  R  *  G  C  R  * :   S  T  R  R  *  *  R  S  W  R  N  C  P  T  T  V  T  L  G  G  N  *  S  R  L  *  I  *  G   : A  S  G  Q  S  I  Q  Y  S  P  *  E  Q  S  R  A  C  W  R  *  A  K  D  C  Y  E  A  P  S  S  S  S  *  R  H  K  E  N  C  V  C  E  F  H  G  S  L  Q  D  :  D  A  *  A  A  *  A  C  Y  D  F  L  A  G  *  N  G  D  *  W  I  T  *  R  A  A  K  I  G  H  Q  G  K  I  C  S  *  E  F  *  R  N  P  P  P  I  C  Q :   *  V  C  H  L  Q  W  L  *  K  S  R  Y  Y  P  F  K  R  E  P  S  F  L  P  P  M  R  E   : V  W  L  W  K  I  S  C  S  Y  Q  G  W  F  R  C  S  C  W  T  S  E  S  W  D  L  I  H  T  A  W  G  L  N  I  L  S  *  *  S  T  L  E  F  C  M  F  C  F  V  F  N  L  R  R  H  I  E  V  W  C  D  F  A  Y  E  E  S  W  F  R  F  T  L  L  G  Y  V  I  L  F  I  S  I  K  C  G  L  Y  L  F  S  S  Y  I  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13742" stop="13799"/>
                    <exon start="14563" stop="14615"/>
                    <exon start="15572" stop="15680"/>
                    <exon start="15885" stop="15937"/>
                    <exon start="16383" stop="16437"/>
                    <exon start="16514" stop="16602"/>
                    <exon start="17104" stop="17249"/>
                    <exon start="18262" stop="18404"/>
                    <exon start="18564" stop="18649"/>
                    <exon start="19313" stop="19390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEKACISIGREDKRIIRLKDLSAIMAEEENQNELVADIAPFDPTKKKKKKKVVIQDPADDSVDSLAEKTENLSVSEGLEATFSGKKKKKKPGHSDLLSDEKESIGEDVDDQPGDDEEAGEIVLQQLPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="13742" e_stop="13799"/>
            <exon e_start="14563" e_stop="14615"/>
            <exon e_start="15572" e_stop="15680"/>
            <exon e_start="15885" e_stop="15937"/>
            <exon e_start="16383" e_stop="16437"/>
            <exon e_start="16514" e_stop="16602"/>
            <exon e_start="17104" e_stop="17249"/>
            <exon e_start="18262" e_stop="18404"/>
            <exon e_start="18564" e_stop="18649"/>
            <exon e_start="19313" e_stop="19591"/>
            <exon e_start="19960" e_stop="19990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.645"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13742" e_stop="13799" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14563" e_stop="14615" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15572" e_stop="15680" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15937" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16383" e_stop="16437" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16514" e_stop="16602" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17104" e_stop="17249" e_length="146"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18262" e_stop="18404" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18564" e_stop="18649" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19313" e_stop="19591" e_length="279"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19592" i_stop="19959" i_length="368"/>
          </intron>
          <exon e_serial="11" e_score="0.645">
            <gDNA_exon_boundary e_start="19960" e_stop="19990" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13742" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13747" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13748" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13751" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13755" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14593" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15618" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16400" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587984" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17110" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
              <exon start="19960" stop="19990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18264" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18379" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19358" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGAGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG : ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT : ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG : TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG : GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG : ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG : CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC : GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA : ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG : TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTT : AAAAAACATTTTAAAATAGAAATTGAAAATA</gDNA_template>
            <first_frame> T  E  K  A  C  I  S  I  G  R  E  D  K  R  I  I  R  L  K   : D  L  S  A  I  M  A  E  E  E  N  Q  N  E  L  V  A  D  :  I  A  P  F  D  P  T  K  K  K  K  K  K  K  V  V  I  Q  D  P  A  D  D  S  V  D  S  L  A  E  K  T  E  N  L  S   : V  S  E  G  L  E  A  T  F  S  G  K  K  K  K  K  K  P  :  G  H  S  D  L  L  S  D  E  K  E  S  I  G  E  D  V  D   : D  Q  P  G  D  D  E  E  A  G  E  I  V  L  Q  Q  L  P  W  E  G  T  D  R  D  Y  E  Y  E  E  :  L  L  G  R  V  F  N  I  L  R  E  N  N  P  E  L  A  G  D  R  R  R  T  V  M  R  P  P  Q  V  L  R  E  G  T  K  K  T  V  F  V  N  F  M  D  L  C  K  T :   M  H  R  Q  P  E  H  V  M  T  F  L  L  A  E  M  G  T  S  G  S  L  D  G  Q  Q  R  L  V  I  K  G  R  F  A  P  K  N  F  E  G  I  L  R  R  Y  V   : N  E  Y  V  I  C  N  G  C  K  S  P  D  T  I  L  S  K  E  N  R  L  F  F  L  R  C  E  K  :  C  G  S  G  R  S  V  A  P  I  K  A  G  F  V  A  R  V  G  R  R  K  A  G  T  *  Y  I  R  L  G  D  *  I  S  C  H  N  R  V  R  W  S  F  V  C  F  A  L  C  L  T  *  G  D  I  L  K  F  G  A  T  L  L  M  K  K  V  G  L  D  L  L  C  W  D  M  L  S  C  L  F  L  *  N  V  A  Y  T  C  F  P  L  :  K  K  H  F  K  I  E  I  E  N  </first_frame>
            <second_frame>  Q  R  K  R  A  F  P  S  A  A  K  I  N  E  S  S  D  *  K  :  I  L  V  Q  S  W  L  K  K  R  I  K  T  S  W  *  L  I :   *  H  L  L  I  L  Q  K  R  R  K  R  R  R  L  *  F  K  I  R  Q  M  T  L  L  I  A  W  L  K  K  L  R  I  Y  L  :  F  L  R  A  L  R  L  R  F  L  V  K  R  K  R  R  S  R :   D  T  L  I  S  *  V  M  K  K  K  V  S  V  R  M  *  M  :  I  N  P  E  M  M  K  K  L  E  K  L  S  Y  N  S  Y  L  G  R  E  L  I  E  I  M  N  M  R  S :   F  W  A  E  Y  S  I  F  S  V  R  T  I  P  S  L  L  E  I  G  E  G  L  L  *  G  P  L  K  F  F  V  K  A  Q  R  K  L  C  L  *  I  S  W  I  F  A  R   : R  C  I  G  S  L  S  M  L  *  L  S  C  W  L  K  W  G  L  V  D  H  L  T  G  S  K  D  W  S  S  R  E  D  L  L  L  R  I  L  K  E  S  S  A  D  M  S  :  M  S  M  S  F  A  M  A  V  K  V  Q  I  L  S  F  Q  K  R  T  V  F  S  S  S  D  A  R  S :   V  A  L  E  D  Q  L  L  L  S  R  L  V  S  L  L  V  L  D  V  G  K  L  G  P  D  T  Y  G  L  G  I  E  Y  L  V  I  I  E  Y  V  G  V  L  Y  V  L  L  C  V  *  P  E  E  T  Y  *  S  L  V  R  L  C  L  *  R  K  L  V  *  I  Y  F  V  G  I  C  Y  L  V  Y  F  Y  K  M  W  L  I  L  V  F  L  L :   K  N  I  L  K  *  K  L  K  I </second_frame>
            <third_frame>   R  E  S  V  H  F  H  R  P  R  R  *  T  N  H  P  I  E  R :   S  *  C  N  H  G  *  R  R  E  S  K  R  V  G  S  *   : Y  S  T  F  *  S  Y  K  K  E  E  K  E  E  G  C  N  S  R  S  G  R  *  L  C  *  *  L  G  *  K  N  *  E  F  I  C :   F  *  G  P  *  G  Y  V  F  W  *  K  E  K  E  E  A   : G  T  L  *  S  P  E  *  *  K  R  K  Y  R  *  G  C  R  * :   S  T  R  R  *  *  R  S  W  R  N  C  P  T  T  V  T  L  G  G  N  *  S  R  L  *  I  *  G   : A  S  G  Q  S  I  Q  Y  S  P  *  E  Q  S  R  A  C  W  R  *  A  K  D  C  Y  E  A  P  S  S  S  S  *  R  H  K  E  N  C  V  C  E  F  H  G  S  L  Q  D  :  D  A  *  A  A  *  A  C  Y  D  F  L  A  G  *  N  G  D  *  W  I  T  *  R  A  A  K  I  G  H  Q  G  K  I  C  S  *  E  F  *  R  N  P  P  P  I  C  Q :   *  V  C  H  L  Q  W  L  *  K  S  R  Y  Y  P  F  K  R  E  P  S  F  L  P  P  M  R  E   : V  W  L  W  K  I  S  C  S  Y  Q  G  W  F  R  C  S  C  W  T  S  E  S  W  D  L  I  H  T  A  W  G  L  N  I  L  S  *  *  S  T  L  E  F  C  M  F  C  F  V  F  N  L  R  R  H  I  E  V  W  C  D  F  A  Y  E  E  S  W  F  R  F  T  L  L  G  Y  V  I  L  F  I  S  I  K  C  G  L  Y  L  F  S  S   : *  K  T  F  *  N  R  N  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13742" stop="13799"/>
                    <exon start="14563" stop="14615"/>
                    <exon start="15572" stop="15680"/>
                    <exon start="15885" stop="15937"/>
                    <exon start="16383" stop="16437"/>
                    <exon start="16514" stop="16602"/>
                    <exon start="17104" stop="17249"/>
                    <exon start="18262" stop="18404"/>
                    <exon start="18564" stop="18649"/>
                    <exon start="19313" stop="19390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEKACISIGREDKRIIRLKDLSAIMAEEENQNELVADIAPFDPTKKKKKKKVVIQDPADDSVDSLAEKTENLSVSEGLEATFSGKKKKKKPGHSDLLSDEKESIGEDVDDQPGDDEEAGEIVLQQLPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="13742" e_stop="13799"/>
            <exon e_start="14563" e_stop="14615"/>
            <exon e_start="15572" e_stop="15680"/>
            <exon e_start="15885" e_stop="15937"/>
            <exon e_start="16383" e_stop="16437"/>
            <exon e_start="16514" e_stop="16602"/>
            <exon e_start="17104" e_stop="17249"/>
            <exon e_start="18262" e_stop="18404"/>
            <exon e_start="18564" e_stop="18649"/>
            <exon e_start="19313" e_stop="19577"/>
            <exon e_start="23754" e_stop="23805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.867"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13742" e_stop="13799" e_length="58"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14563" e_stop="14615" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15572" e_stop="15680" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15937" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16383" e_stop="16437" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16514" e_stop="16602" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17104" e_stop="17249" e_length="146"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18262" e_stop="18404" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18564" e_stop="18649" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19313" e_stop="19577" e_length="265"/>
          </exon>
          <intron i_serial="10" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19578" i_stop="23753" i_length="4176"/>
          </intron>
          <exon e_serial="11" e_score="0.867">
            <gDNA_exon_boundary e_start="23754" e_stop="23805" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13742" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13747" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13748" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13751" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13755" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13756" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14593" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15618" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16400" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587984" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18264" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18338" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19577"/>
              <exon start="23754" stop="23805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18379" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19358" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAGAGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG : ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT : ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG : TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG : GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG : ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG : CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC : GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA : ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG : TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATA : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATTAAAAAAAA</gDNA_template>
            <first_frame> T  E  K  A  C  I  S  I  G  R  E  D  K  R  I  I  R  L  K   : D  L  S  A  I  M  A  E  E  E  N  Q  N  E  L  V  A  D  :  I  A  P  F  D  P  T  K  K  K  K  K  K  K  V  V  I  Q  D  P  A  D  D  S  V  D  S  L  A  E  K  T  E  N  L  S   : V  S  E  G  L  E  A  T  F  S  G  K  K  K  K  K  K  P  :  G  H  S  D  L  L  S  D  E  K  E  S  I  G  E  D  V  D   : D  Q  P  G  D  D  E  E  A  G  E  I  V  L  Q  Q  L  P  W  E  G  T  D  R  D  Y  E  Y  E  E  :  L  L  G  R  V  F  N  I  L  R  E  N  N  P  E  L  A  G  D  R  R  R  T  V  M  R  P  P  Q  V  L  R  E  G  T  K  K  T  V  F  V  N  F  M  D  L  C  K  T :   M  H  R  Q  P  E  H  V  M  T  F  L  L  A  E  M  G  T  S  G  S  L  D  G  Q  Q  R  L  V  I  K  G  R  F  A  P  K  N  F  E  G  I  L  R  R  Y  V   : N  E  Y  V  I  C  N  G  C  K  S  P  D  T  I  L  S  K  E  N  R  L  F  F  L  R  C  E  K  :  C  G  S  G  R  S  V  A  P  I  K  A  G  F  V  A  R  V  G  R  R  K  A  G  T  *  Y  I  R  L  G  D  *  I  S  C  H  N  R  V  R  W  S  F  V  C  F  A  L  C  L  T  *  G  D  I  L  K  F  G  A  T  L  L  M  K  K  V  G  L  D  L  L  C  W  D  M  L  S  C  L  F  L  *  N  V  A  Y   : I  F  F  F  F  F  F  F  F  F  F  F  L  K  I  K  K   </first_frame>
            <second_frame>  Q  R  K  R  A  F  P  S  A  A  K  I  N  E  S  S  D  *  K  :  I  L  V  Q  S  W  L  K  K  R  I  K  T  S  W  *  L  I :   *  H  L  L  I  L  Q  K  R  R  K  R  R  R  L  *  F  K  I  R  Q  M  T  L  L  I  A  W  L  K  K  L  R  I  Y  L  :  F  L  R  A  L  R  L  R  F  L  V  K  R  K  R  R  S  R :   D  T  L  I  S  *  V  M  K  K  K  V  S  V  R  M  *  M  :  I  N  P  E  M  M  K  K  L  E  K  L  S  Y  N  S  Y  L  G  R  E  L  I  E  I  M  N  M  R  S :   F  W  A  E  Y  S  I  F  S  V  R  T  I  P  S  L  L  E  I  G  E  G  L  L  *  G  P  L  K  F  F  V  K  A  Q  R  K  L  C  L  *  I  S  W  I  F  A  R   : R  C  I  G  S  L  S  M  L  *  L  S  C  W  L  K  W  G  L  V  D  H  L  T  G  S  K  D  W  S  S  R  E  D  L  L  L  R  I  L  K  E  S  S  A  D  M  S  :  M  S  M  S  F  A  M  A  V  K  V  Q  I  L  S  F  Q  K  R  T  V  F  S  S  S  D  A  R  S :   V  A  L  E  D  Q  L  L  L  S  R  L  V  S  L  L  V  L  D  V  G  K  L  G  P  D  T  Y  G  L  G  I  E  Y  L  V  I  I  E  Y  V  G  V  L  Y  V  L  L  C  V  *  P  E  E  T  Y  *  S  L  V  R  L  C  L  *  R  K  L  V  *  I  Y  F  V  G  I  C  Y  L  V  Y  F  Y  K  M  W  L  I  :  F  F  F  F  F  F  F  F  F  F  F  F  *  K  L  K  K  </second_frame>
            <third_frame>   R  E  S  V  H  F  H  R  P  R  R  *  T  N  H  P  I  E  R :   S  *  C  N  H  G  *  R  R  E  S  K  R  V  G  S  *   : Y  S  T  F  *  S  Y  K  K  E  E  K  E  E  G  C  N  S  R  S  G  R  *  L  C  *  *  L  G  *  K  N  *  E  F  I  C :   F  *  G  P  *  G  Y  V  F  W  *  K  E  K  E  E  A   : G  T  L  *  S  P  E  *  *  K  R  K  Y  R  *  G  C  R  * :   S  T  R  R  *  *  R  S  W  R  N  C  P  T  T  V  T  L  G  G  N  *  S  R  L  *  I  *  G   : A  S  G  Q  S  I  Q  Y  S  P  *  E  Q  S  R  A  C  W  R  *  A  K  D  C  Y  E  A  P  S  S  S  S  *  R  H  K  E  N  C  V  C  E  F  H  G  S  L  Q  D  :  D  A  *  A  A  *  A  C  Y  D  F  L  A  G  *  N  G  D  *  W  I  T  *  R  A  A  K  I  G  H  Q  G  K  I  C  S  *  E  F  *  R  N  P  P  P  I  C  Q :   *  V  C  H  L  Q  W  L  *  K  S  R  Y  Y  P  F  K  R  E  P  S  F  L  P  P  M  R  E   : V  W  L  W  K  I  S  C  S  Y  Q  G  W  F  R  C  S  C  W  T  S  E  S  W  D  L  I  H  T  A  W  G  L  N  I  L  S  *  *  S  T  L  E  F  C  M  F  C  F  V  F  N  L  R  R  H  I  E  V  W  C  D  F  A  Y  E  E  S  W  F  R  F  T  L  L  G  Y  V  I  L  F  I  S  I  K  C  G  L  Y :   F  F  F  F  F  F  F  F  F  F  F  F  K  N  *  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13742" stop="13799"/>
                    <exon start="14563" stop="14615"/>
                    <exon start="15572" stop="15680"/>
                    <exon start="15885" stop="15937"/>
                    <exon start="16383" stop="16437"/>
                    <exon start="16514" stop="16602"/>
                    <exon start="17104" stop="17249"/>
                    <exon start="18262" stop="18404"/>
                    <exon start="18564" stop="18649"/>
                    <exon start="19313" stop="19390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>867</number_coding_nucleotides>
                  <number_encoded_amino_acids>289</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEKACISIGREDKRIIRLKDLSAIMAEEENQNELVADIAPFDPTKKKKKKKVVIQDPADDSVDSLAEKTENLSVSEGLEATFSGKKKKKKPGHSDLLSDEKESIGEDVDDQPGDDEEAGEIVLQQLPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19429" stop="19577"/>
                    <exon start="23754" stop="23799"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STLEFCMFCFVFNLRRHIEVWCDFAYEESWFRFTLLGYVILFISIKCGLYFFFFFFFFFFFFKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="13747" e_stop="13799"/>
            <exon e_start="14563" e_stop="14615"/>
            <exon e_start="15572" e_stop="15680"/>
            <exon e_start="15885" e_stop="16437"/>
            <exon e_start="16514" e_stop="16602"/>
            <exon e_start="17104" e_stop="17249"/>
            <exon e_start="18262" e_stop="18404"/>
            <exon e_start="18564" e_stop="18649"/>
            <exon e_start="19313" e_stop="19591"/>
            <exon e_start="19960" e_stop="19990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.645"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="13747" e_stop="13799" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13800" i_stop="14562" i_length="763"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14563" e_stop="14615" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15572" e_stop="15680" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="16437" e_length="553"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16514" e_stop="16602" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17104" e_stop="17249" e_length="146"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="18262" e_stop="18404" e_length="143"/>
          </exon>
          <intron i_serial="7" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18564" e_stop="18649" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="19313" e_stop="19591" e_length="279"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="19592" i_stop="19959" i_length="368"/>
          </intron>
          <exon e_serial="10" e_score="0.645">
            <gDNA_exon_boundary e_start="19960" e_stop="19990" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13747" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="16411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13748" stop="13799"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="16234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16334" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599781" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16379" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16400" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587984" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17110" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
              <exon start="19960" stop="19990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18264" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18379" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19358" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAG : ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT : ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG : TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCGGTTAGTTTTGTTCAATTCGACATGAATTTGTTTTGATTGAATTATCCATGAATACCTTGCCCCCTCATCTATTTTCTGGCTCCAACCTCTCCTGGAAGAGGACACTGGTGGAGGACTAAATGGTGCAATAGGAACATGAATGTTTACACGTAGAGGGTACAGAAAAAGAGGGTGGGAGTGAAGAGATGATTAAGGGAAGCTTATTTTTTTTTCTTTCTTATGTATCTCAAGAAACCCATTTTTTTGAACTCCCCTGACACATAATACGGTCAGTTTTATCAGAATAAGATTTCACGAGGGTTTAAATGCTACAGAAATAGTCAAAGGCTTAAACTTATGACCTCATTATGTTTTAGTGTGATTCACTCAATAATACAAGACATTAGGAGTATTTTCTTGAGATCCATTGTCATGACCCATCACAAACCATTTTAAAACTGTGCAGGGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG : ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG : CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC : GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA : ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG : TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTT : AAAAAACATTTTAAAATAGAAATTGAAAATA</gDNA_template>
            <first_frame> E  S  V  H  F  H  R  P  R  R  *  T  N  H  P  I  E  R :   S  *  C  N  H  G  *  R  R  E  S  K  R  V  G  S  *   : Y  S  T  F  *  S  Y  K  K  E  E  K  E  E  G  C  N  S  R  S  G  R  *  L  C  *  *  L  G  *  K  N  *  E  F  I  C :   F  *  G  P  *  G  Y  V  F  W  *  K  E  K  E  E  A  G  *  F  C  S  I  R  H  E  F  V  L  I  E  L  S  M  N  T  L  P  P  H  L  F  S  G  S  N  L  S  W  K  R  T  L  V  E  D  *  M  V  Q  *  E  H  E  C  L  H  V  E  G  T  E  K  E  G  G  S  E  E  M  I  K  G  S  L  F  F  F  L  S  Y  V  S  Q  E  T  H  F  F  E  L  P  *  H  I  I  R  S  V  L  S  E  *  D  F  T  R  V  *  M  L  Q  K  *  S  K  A  *  T  Y  D  L  I  M  F  *  C  D  S  L  N  N  T  R  H  *  E  Y  F  L  E  I  H  C  H  D  P  S  Q  T  I  L  K  L  C  R  D  T  L  I  S  *  V  M  K  K  K  V  S  V  R  M  *  M  :  I  N  P  E  M  M  K  K  L  E  K  L  S  Y  N  S  Y  L  G  R  E  L  I  E  I  M  N  M  R  S :   F  W  A  E  Y  S  I  F  S  V  R  T  I  P  S  L  L  E  I  G  E  G  L  L  *  G  P  L  K  F  F  V  K  A  Q  R  K  L  C  L  *  I  S  W  I  F  A  R   : R  C  I  G  S  L  S  M  L  *  L  S  C  W  L  K  W  G  L  V  D  H  L  T  G  S  K  D  W  S  S  R  E  D  L  L  L  R  I  L  K  E  S  S  A  D  M  S  :  M  S  M  S  F  A  M  A  V  K  V  Q  I  L  S  F  Q  K  R  T  V  F  S  S  S  D  A  R  S :   V  A  L  E  D  Q  L  L  L  S  R  L  V  S  L  L  V  L  D  V  G  K  L  G  P  D  T  Y  G  L  G  I  E  Y  L  V  I  I  E  Y  V  G  V  L  Y  V  L  L  C  V  *  P  E  E  T  Y  *  S  L  V  R  L  C  L  *  R  K  L  V  *  I  Y  F  V  G  I  C  Y  L  V  Y  F  Y  K  M  W  L  I  L  V  F  L  L :   K  N  I  L  K  *  K  L  K  I </first_frame>
            <second_frame>  K  A  C  I  S  I  G  R  E  D  K  R  I  I  R  L  K   : D  L  S  A  I  M  A  E  E  E  N  Q  N  E  L  V  A  D  :  I  A  P  F  D  P  T  K  K  K  K  K  K  K  V  V  I  Q  D  P  A  D  D  S  V  D  S  L  A  E  K  T  E  N  L  S   : V  S  E  G  L  E  A  T  F  S  G  K  K  K  K  K  K  P  V  S  F  V  Q  F  D  M  N  L  F  *  L  N  Y  P  *  I  P  C  P  L  I  Y  F  L  A  P  T  S  P  G  R  G  H  W  W  R  T  K  W  C  N  R  N  M  N  V  Y  T  *  R  V  Q  K  K  R  V  G  V  K  R  *  L  R  E  A  Y  F  F  F  F  L  M  Y  L  K  K  P  I  F  L  N  S  P  D  T  *  Y  G  Q  F  Y  Q  N  K  I  S  R  G  F  K  C  Y  R  N  S  Q  R  L  K  L  M  T  S  L  C  F  S  V  I  H  S  I  I  Q  D  I  R  S  I  F  L  R  S  I  V  M  T  H  H  K  P  F  *  N  C  A  G  T  L  *  S  P  E  *  *  K  R  K  Y  R  *  G  C  R  * :   S  T  R  R  *  *  R  S  W  R  N  C  P  T  T  V  T  L  G  G  N  *  S  R  L  *  I  *  G   : A  S  G  Q  S  I  Q  Y  S  P  *  E  Q  S  R  A  C  W  R  *  A  K  D  C  Y  E  A  P  S  S  S  S  *  R  H  K  E  N  C  V  C  E  F  H  G  S  L  Q  D  :  D  A  *  A  A  *  A  C  Y  D  F  L  A  G  *  N  G  D  *  W  I  T  *  R  A  A  K  I  G  H  Q  G  K  I  C  S  *  E  F  *  R  N  P  P  P  I  C  Q :   *  V  C  H  L  Q  W  L  *  K  S  R  Y  Y  P  F  K  R  E  P  S  F  L  P  P  M  R  E   : V  W  L  W  K  I  S  C  S  Y  Q  G  W  F  R  C  S  C  W  T  S  E  S  W  D  L  I  H  T  A  W  G  L  N  I  L  S  *  *  S  T  L  E  F  C  M  F  C  F  V  F  N  L  R  R  H  I  E  V  W  C  D  F  A  Y  E  E  S  W  F  R  F  T  L  L  G  Y  V  I  L  F  I  S  I  K  C  G  L  Y  L  F  S  S   : *  K  T  F  *  N  R  N  *  K   </second_frame>
            <third_frame>   K  R  A  F  P  S  A  A  K  I  N  E  S  S  D  *  K  :  I  L  V  Q  S  W  L  K  K  R  I  K  T  S  W  *  L  I :   *  H  L  L  I  L  Q  K  R  R  K  R  R  R  L  *  F  K  I  R  Q  M  T  L  L  I  A  W  L  K  K  L  R  I  Y  L  :  F  L  R  A  L  R  L  R  F  L  V  K  R  K  R  R  S  R  L  V  L  F  N  S  T  *  I  C  F  D  *  I  I  H  E  Y  L  A  P  S  S  I  F  W  L  Q  P  L  L  E  E  D  T  G  G  G  L  N  G  A  I  G  T  *  M  F  T  R  R  G  Y  R  K  R  G  W  E  *  R  D  D  *  G  K  L  I  F  F  S  F  L  C  I  S  R  N  P  F  F  *  T  P  L  T  H  N  T  V  S  F  I  R  I  R  F  H  E  G  L  N  A  T  E  I  V  K  G  L  N  L  *  P  H  Y  V  L  V  *  F  T  Q  *  Y  K  T  L  G  V  F  S  *  D  P  L  S  *  P  I  T  N  H  F  K  T  V  Q  G  H  S  D  L  L  S  D  E  K  E  S  I  G  E  D  V  D   : D  Q  P  G  D  D  E  E  A  G  E  I  V  L  Q  Q  L  P  W  E  G  T  D  R  D  Y  E  Y  E  E  :  L  L  G  R  V  F  N  I  L  R  E  N  N  P  E  L  A  G  D  R  R  R  T  V  M  R  P  P  Q  V  L  R  E  G  T  K  K  T  V  F  V  N  F  M  D  L  C  K  T :   M  H  R  Q  P  E  H  V  M  T  F  L  L  A  E  M  G  T  S  G  S  L  D  G  Q  Q  R  L  V  I  K  G  R  F  A  P  K  N  F  E  G  I  L  R  R  Y  V   : N  E  Y  V  I  C  N  G  C  K  S  P  D  T  I  L  S  K  E  N  R  L  F  F  L  R  C  E  K  :  C  G  S  G  R  S  V  A  P  I  K  A  G  F  V  A  R  V  G  R  R  K  A  G  T  *  Y  I  R  L  G  D  *  I  S  C  H  N  R  V  R  W  S  F  V  C  F  A  L  C  L  T  *  G  D  I  L  K  F  G  A  T  L  L  M  K  K  V  G  L  D  L  L  C  W  D  M  L  S  C  L  F  L  *  N  V  A  Y  T  C  F  P  L  :  K  K  H  F  K  I  E  I  E  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16353" stop="16437"/>
                    <exon start="16514" stop="16602"/>
                    <exon start="17104" stop="17249"/>
                    <exon start="18262" stop="18404"/>
                    <exon start="18564" stop="18649"/>
                    <exon start="19313" stop="19390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>624</number_coding_nucleotides>
                  <number_encoded_amino_acids>208</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PITNHFKTVQGHSDLLSDEKESIGEDVDDQPGDDEEAGEIVLQQLPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13748" stop="13799"/>
                    <exon start="14563" stop="14615"/>
                    <exon start="15572" stop="15680"/>
                    <exon start="15885" stop="15973"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KACISIGREDKRIIRLKDLSAIMAEEENQNELVADIAPFDPTKKKKKKKVVIQDPADDSVDSLAEKTENLSVSEGLEATFSGKKKKKKPVSFVQFDMNLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="13746" e_stop="13829"/>
            <exon e_start="14563" e_stop="14615"/>
            <exon e_start="15572" e_stop="15680"/>
            <exon e_start="15885" e_stop="15937"/>
            <exon e_start="16383" e_stop="16437"/>
            <exon e_start="16514" e_stop="16602"/>
            <exon e_start="17104" e_stop="17249"/>
            <exon e_start="18262" e_stop="18404"/>
            <exon e_start="18564" e_stop="18649"/>
            <exon e_start="19313" e_stop="19601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.940"/>
          <exon-intron don_prob="0.988" acc_prob="0.978" e_score="0.957"/>
          <exon-intron don_prob="0.952" acc_prob="0.999" e_score="0.988"/>
          <exon-intron don_prob="0.982" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.909" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="13746" e_stop="13829" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="13830" i_stop="14562" i_length="733"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="14563" e_stop="14615" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.978">
            <gDNA_intron_boundary i_start="14616" i_stop="15571" i_length="956"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="15572" e_stop="15680" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15681" i_stop="15884" i_length="204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15885" e_stop="15937" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.982" acc_prob="0.990">
            <gDNA_intron_boundary i_start="15938" i_stop="16382" i_length="445"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16383" e_stop="16437" e_length="55"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.909">
            <gDNA_intron_boundary i_start="16438" i_stop="16513" i_length="76"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16514" e_stop="16602" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="16603" i_stop="17103" i_length="501"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17104" e_stop="17249" e_length="146"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="17250" i_stop="18261" i_length="1012"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="18262" e_stop="18404" e_length="143"/>
          </exon>
          <intron i_serial="8" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18405" i_stop="18563" i_length="159"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="18564" e_stop="18649" e_length="86"/>
          </exon>
          <intron i_serial="9" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18650" i_stop="19312" i_length="663"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="19313" e_stop="19601" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13746" stop="13829"/>
              <exon start="14563" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14593" stop="14615"/>
              <exon start="15572" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574636" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15595" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15618" stop="15680"/>
              <exon start="15885" stop="15937"/>
              <exon start="16383" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16400" stop="16437"/>
              <exon start="16514" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587984" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16585" stop="16602"/>
              <exon start="17104" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17165" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17174" stop="17249"/>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18262" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18264" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587091" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18379" stop="18404"/>
              <exon start="18564" stop="18649"/>
              <exon start="19313" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19358" stop="19528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGCGTGCATTTCCATCGGCCGCGAAGATAAACGAATCATCCGATTGAAAGGTTAGCTTCTCATCTCTTATCTGAAACAAG : ATCTTAGTGCAATCATGGCTGAAGAAGAGAATCAAAACGAGTTGGTAGCTGAT : ATAGCACCTTTTGATCCTACAAAAAAGAAGAAAAAGAAGAAGGTTGTAATTCAAGATCCGGCAGATGACTCTGTTGATAGCTTGGCTGAAAAAACTGAGAATTTATCTG : TTTCTGAGGGCCTTGAGGCTACGTTTTCTGGTAAAAAGAAAAAGAAGAAGCCG : GGACACTCTGATCTCCTGAGTGATGAAAAAGAAAGTATCGGTGAGGATGTAGATG : ATCAACCCGGAGATGATGAAGAAGCTGGAGAAATTGTCCTACAACAGTTACCTTGGGAGGGAACTGATCGAGATTATGAATATGAGGAG : CTTCTGGGCAGAGTATTCAATATTCTCCGTGAGAACAATCCCGAGCTTGCTGGAGATAGGCGAAGGACTGTTATGAGGCCCCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTGTTTGTGAATTTCATGGATCTTTGCAAGAC : GATGCATAGGCAGCCTGAGCATGTTATGACTTTCTTGCTGGCTGAAATGGGGACTAGTGGATCACTTGACGGGCAGCAAAGATTGGTCATCAAGGGAAGATTTGCTCCTAAGAATTTTGAAGGAATCCTCCGCCGATATGTCA : ATGAGTATGTCATTTGCAATGGCTGTAAAAGTCCAGATACTATCCTTTCAAAAGAGAACCGTCTTTTCTTCCTCCGATGCGAGAAG : TGTGGCTCTGGAAGATCAGTTGCTCCTATCAAGGCTGGTTTCGTTGCTCGTGTTGGACGTCGGAAAGCTGGGACCTGATACATACGGCTTGGGGATTGAATATCTTGTCATAATAGAGTACGTTGGAGTTTTGTATGTTTTGCTTTGTGTTTAACCTGAGGAGACATATTGAAGTTTGGTGCGACTTTGCTTATGAAGAAAGTTGGTTTAGATTTACTTTGTTGGGATATGTTATCTTGTTTATTTCTATAAAATGTGGCTTATACTTGTTTTCCTCTTATATTCAACT</gDNA_template>
            <first_frame> R  K  R  A  F  P  S  A  A  K  I  N  E  S  S  D  *  K  V  S  F  S  S  L  I  *  N  K  :  I  L  V  Q  S  W  L  K  K  R  I  K  T  S  W  *  L  I :   *  H  L  L  I  L  Q  K  R  R  K  R  R  R  L  *  F  K  I  R  Q  M  T  L  L  I  A  W  L  K  K  L  R  I  Y  L  :  F  L  R  A  L  R  L  R  F  L  V  K  R  K  R  R  S  R :   D  T  L  I  S  *  V  M  K  K  K  V  S  V  R  M  *  M  :  I  N  P  E  M  M  K  K  L  E  K  L  S  Y  N  S  Y  L  G  R  E  L  I  E  I  M  N  M  R  S :   F  W  A  E  Y  S  I  F  S  V  R  T  I  P  S  L  L  E  I  G  E  G  L  L  *  G  P  L  K  F  F  V  K  A  Q  R  K  L  C  L  *  I  S  W  I  F  A  R   : R  C  I  G  S  L  S  M  L  *  L  S  C  W  L  K  W  G  L  V  D  H  L  T  G  S  K  D  W  S  S  R  E  D  L  L  L  R  I  L  K  E  S  S  A  D  M  S  :  M  S  M  S  F  A  M  A  V  K  V  Q  I  L  S  F  Q  K  R  T  V  F  S  S  S  D  A  R  S :   V  A  L  E  D  Q  L  L  L  S  R  L  V  S  L  L  V  L  D  V  G  K  L  G  P  D  T  Y  G  L  G  I  E  Y  L  V  I  I  E  Y  V  G  V  L  Y  V  L  L  C  V  *  P  E  E  T  Y  *  S  L  V  R  L  C  L  *  R  K  L  V  *  I  Y  F  V  G  I  C  Y  L  V  Y  F  Y  K  M  W  L  I  L  V  F  L  L  Y  S  T </first_frame>
            <second_frame>  E  S  V  H  F  H  R  P  R  R  *  T  N  H  P  I  E  R  L  A  S  H  L  L  S  E  T  R :   S  *  C  N  H  G  *  R  R  E  S  K  R  V  G  S  *   : Y  S  T  F  *  S  Y  K  K  E  E  K  E  E  G  C  N  S  R  S  G  R  *  L  C  *  *  L  G  *  K  N  *  E  F  I  C :   F  *  G  P  *  G  Y  V  F  W  *  K  E  K  E  E  A   : G  T  L  *  S  P  E  *  *  K  R  K  Y  R  *  G  C  R  * :   S  T  R  R  *  *  R  S  W  R  N  C  P  T  T  V  T  L  G  G  N  *  S  R  L  *  I  *  G   : A  S  G  Q  S  I  Q  Y  S  P  *  E  Q  S  R  A  C  W  R  *  A  K  D  C  Y  E  A  P  S  S  S  S  *  R  H  K  E  N  C  V  C  E  F  H  G  S  L  Q  D  :  D  A  *  A  A  *  A  C  Y  D  F  L  A  G  *  N  G  D  *  W  I  T  *  R  A  A  K  I  G  H  Q  G  K  I  C  S  *  E  F  *  R  N  P  P  P  I  C  Q :   *  V  C  H  L  Q  W  L  *  K  S  R  Y  Y  P  F  K  R  E  P  S  F  L  P  P  M  R  E   : V  W  L  W  K  I  S  C  S  Y  Q  G  W  F  R  C  S  C  W  T  S  E  S  W  D  L  I  H  T  A  W  G  L  N  I  L  S  *  *  S  T  L  E  F  C  M  F  C  F  V  F  N  L  R  R  H  I  E  V  W  C  D  F  A  Y  E  E  S  W  F  R  F  T  L  L  G  Y  V  I  L  F  I  S  I  K  C  G  L  Y  L  F  S  S  Y  I  Q   </second_frame>
            <third_frame>   K  A  C  I  S  I  G  R  E  D  K  R  I  I  R  L  K  G  *  L  L  I  S  Y  L  K  Q   : D  L  S  A  I  M  A  E  E  E  N  Q  N  E  L  V  A  D  :  I  A  P  F  D  P  T  K  K  K  K  K  K  K  V  V  I  Q  D  P  A  D  D  S  V  D  S  L  A  E  K  T  E  N  L  S   : V  S  E  G  L  E  A  T  F  S  G  K  K  K  K  K  K  P  :  G  H  S  D  L  L  S  D  E  K  E  S  I  G  E  D  V  D   : D  Q  P  G  D  D  E  E  A  G  E  I  V  L  Q  Q  L  P  W  E  G  T  D  R  D  Y  E  Y  E  E  :  L  L  G  R  V  F  N  I  L  R  E  N  N  P  E  L  A  G  D  R  R  R  T  V  M  R  P  P  Q  V  L  R  E  G  T  K  K  T  V  F  V  N  F  M  D  L  C  K  T :   M  H  R  Q  P  E  H  V  M  T  F  L  L  A  E  M  G  T  S  G  S  L  D  G  Q  Q  R  L  V  I  K  G  R  F  A  P  K  N  F  E  G  I  L  R  R  Y  V   : N  E  Y  V  I  C  N  G  C  K  S  P  D  T  I  L  S  K  E  N  R  L  F  F  L  R  C  E  K  :  C  G  S  G  R  S  V  A  P  I  K  A  G  F  V  A  R  V  G  R  R  K  A  G  T  *  Y  I  R  L  G  D  *  I  S  C  H  N  R  V  R  W  S  F  V  C  F  A  L  C  L  T  *  G  D  I  L  K  F  G  A  T  L  L  M  K  K  V  G  L  D  L  L  C  W  D  M  L  S  C  L  F  L  *  N  V  A  Y  T  C  F  P  L  I  F  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13805" stop="13829"/>
                    <exon start="14563" stop="14615"/>
                    <exon start="15572" stop="15680"/>
                    <exon start="15885" stop="15937"/>
                    <exon start="16383" stop="16437"/>
                    <exon start="16514" stop="16602"/>
                    <exon start="17104" stop="17249"/>
                    <exon start="18262" stop="18404"/>
                    <exon start="18564" stop="18649"/>
                    <exon start="19313" stop="19390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLISYLKQDLSAIMAEEENQNELVADIAPFDPTKKKKKKKVVIQDPADDSVDSLAEKTENLSVSEGLEATFSGKKKKKKPGHSDLLSDEKESIGEDVDDQPGDDEEAGEIVLQQLPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPEHVMTFLLAEMGTSGSLDGQQRLVIKGRFAPKNFEGILRRYVNEYVICNGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRKAGT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="21132" e_stop="21602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21132" e_stop="21602" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21132" stop="21602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21132" stop="21533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319526" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21133" stop="21602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAACTTAAGAGCTCCTTTTAATAGTTTAAGGCCAATTTTGATGCTTTTCCAAATATATATATATAGATATATGTAAATCGAATAGTTTTCAGTTAGTTTCCTTCAATATTAAAAGCTTCAAGACAAACTTGAAGGTAACATCTTTCAAAAGCTTCAATCTTTTCTCATTAAATTAGATAGTCGAAAATAAATTAATTTTATGTATTTACTTATGCATATATATATATATAACTTTGTAATGGATCGACTGTGACAATTATTATCATATATATCTAAACGCATAATTAATCGTATATATTCCGATAAGTGGATGAATGGAAGTGTAGTACTAAACAACATTACAGAGAGAGTTAAGTAGAAGTGCTTTATGATAAAGATGGAATCAAAGAAATCACAGCGTCTCAGTTGGTTGGATTGCTTCTTAGGACCCAAAAACAGCAACTCCAAGTGGCTTCAACAGAATCTTGATG</gDNA_template>
            <first_frame> R  T  *  E  L  L  L  I  V  *  G  Q  F  *  C  F  S  K  Y  I  Y  I  D  I  C  K  S  N  S  F  Q  L  V  S  F  N  I  K  S  F  K  T  N  L  K  V  T  S  F  K  S  F  N  L  F  S  L  N  *  I  V  E  N  K  L  I  L  C  I  Y  L  C  I  Y  I  Y  I  T  L  *  W  I  D  C  D  N  Y  Y  H  I  Y  L  N  A  *  L  I  V  Y  I  P  I  S  G  *  M  E  V  *  Y  *  T  T  L  Q  R  E  L  S  R  S  A  L  *  *  R  W  N  Q  R  N  H  S  V  S  V  G  W  I  A  S  *  D  P  K  T  A  T  P  S  G  F  N  R  I  L  M </first_frame>
            <second_frame>  E  L  K  S  S  F  *  *  F  K  A  N  F  D  A  F  P  N  I  Y  I  *  I  Y  V  N  R  I  V  F  S  *  F  P  S  I  L  K  A  S  R  Q  T  *  R  *  H  L  S  K  A  S  I  F  S  H  *  I  R  *  S  K  I  N  *  F  Y  V  F  T  Y  A  Y  I  Y  I  *  L  C  N  G  S  T  V  T  I  I  I  I  Y  I  *  T  H  N  *  S  Y  I  F  R  *  V  D  E  W  K  C  S  T  K  Q  H  Y  R  E  S  *  V  E  V  L  Y  D  K  D  G  I  K  E  I  T  A  S  Q  L  V  G  L  L  L  R  T  Q  K  Q  Q  L  Q  V  A  S  T  E  S  *   </second_frame>
            <third_frame>   N  L  R  A  P  F  N  S  L  R  P  I  L  M  L  F  Q  I  Y  I  Y  R  Y  M  *  I  E  *  F  S  V  S  F  L  Q  Y  *  K  L  Q  D  K  L  E  G  N  I  F  Q  K  L  Q  S  F  L  I  K  L  D  S  R  K  *  I  N  F  M  Y  L  L  M  H  I  Y  I  Y  N  F  V  M  D  R  L  *  Q  L  L  S  Y  I  S  K  R  I  I  N  R  I  Y  S  D  K  W  M  N  G  S  V  V  L  N  N  I  T  E  R  V  K  *  K  C  F  M  I  K  M  E  S  K  K  S  Q  R  L  S  W  L  D  C  F  L  G  P  K  N  S  N  S  K  W  L  Q  Q  N  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="40080" PGL_stop="30319"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39991" e_stop="39161"/>
            <exon e_start="38646" e_stop="38513"/>
            <exon e_start="37811" e_stop="37027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.950"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="39991" e_stop="39161" e_length="831"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38646" e_stop="38513" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="37811" e_stop="37027" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39991" stop="39516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39981" stop="39419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39980" stop="39340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39979" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39976" stop="39372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39971" stop="39248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39969" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="39545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39964" stop="39517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39963" stop="39412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39961" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39958" stop="39595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39955" stop="39534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39852" stop="39515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39790" stop="39477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39632" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39579" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39571" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39519" stop="39161"/>
              <exon start="38646" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="39161"/>
              <exon start="38646" stop="38548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39465" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39458" stop="39161"/>
              <exon start="38646" stop="38529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39407" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39392" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39374" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39357" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39347" stop="39161"/>
              <exon start="38646" stop="38553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39304" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39297" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39270" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39265" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39178" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38621" stop="38513"/>
              <exon start="37811" stop="37552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38619" stop="38513"/>
              <exon start="37811" stop="37183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38555" stop="38513"/>
              <exon start="37811" stop="37463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37811" stop="37091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37789" stop="37290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37762" stop="37172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37718" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37687" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37677" stop="37296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37640" stop="37320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37603" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37497" stop="37033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37456" stop="37118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37432" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338012" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37423" stop="37107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37376" stop="37064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGAGTTGAT</gDNA_template>
            <first_frame> S  S  T  K  I  P  I  F  H  Q  K  N  S  K  K  N  G  S  S  L  A  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  H  L  *  T  S  F  Q  A  I  Q  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  K  N  G  A  K  E  L  S  C  C  V  I  P  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  H  *  Q  S  C  A  A  V  *  R  G  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  T  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  A  I  Q  R  L  L  C  *  *  K  K  :  E  A  C  K  Y  Q  E  Y  G  Q  Q  C  S  K  M  C  N  *  S  H  S  *  S  S  T  E  G  R  D  Q  R  G  *  R  S  L  H  R  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  F  L  N  F  V  I  L  S  V  N  Y  D  C  C  L  F  V  Q  K  I  F  F  S  F  M  F  F  I  K  V  L  L  D  *  I  H  Y  K  F  Y  L  Y  D  V  Q  W  *  F  G  F  L  T  I  A  L  F  *  R  K  L  L  T  S  *  </first_frame>
            <second_frame>  A  V  Q  K  Y  P  F  F  I  K  R  T  Q  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  E  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  I  M  T  V  V  C  L  F  R  K  F  S  S  L  L  C  F  S  *  K  S  Y  *  T  R  F  I  I  S  F  T  Y  M  M  Y  N  G  N  L  A  F  *  Q  L  H  Y  F  D  E  N  Y  L  R  V  D </second_frame>
            <third_frame>   Q  Y  K  N  T  H  F  S  S  K  E  L  K  K  K  W  I  F  S  C  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  S  S  L  N  F  V  P  S  D  S  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  *  E  W  G  K  G  T  *  L  L  C  H  P  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  S  L  T  K  L  C  S  S  I  E  G  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  H  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  S  Y  S  K  T  T  L  L  M  K  E   : R  S  L  Q  I  P  R  V  W  T  A  M  L  *  N  V  Q  L  I  T  F  L  K  L  N  R  R  E  R  S  T  R  I  T  F  F  T  S  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  L  S  K  L  C  N  T  I  S  *  L  *  L  L  F  V  C  S  E  N  F  L  L  F  Y  V  F  H  K  S  L  I  R  L  D  S  L  *  V  L  P  I  *  C  T  M  V  I  W  L  S  D  N  C  I  I  L  T  K  I  T  Y  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39990" stop="39161"/>
                    <exon start="38646" stop="38513"/>
                    <exon start="37811" stop="37213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1560</number_coding_nucleotides>
                  <number_encoded_amino_acids>520</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVQKYPFFIKRTQKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILEAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33922" e_stop="33089"/>
            <exon e_start="32362" e_stop="32229"/>
            <exon e_start="31168" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="33922" e_stop="33089" e_length="834"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32362" e_stop="32229" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="31168" e_stop="30319" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33922" stop="33453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33916" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33909" stop="33458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="33256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33897" stop="33417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33893" stop="33457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33877" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33839" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33824" stop="33192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33804" stop="33517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33089"/>
              <exon start="32362" stop="32293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33743" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33729" stop="33222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33538" stop="33089"/>
              <exon start="32362" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33525" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33521" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33520" stop="33089"/>
              <exon start="32362" stop="32287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33513" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33441" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33428" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33411" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33408" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33405" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33401" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33396" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33370" stop="33089"/>
              <exon start="32362" stop="32239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33326" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33310" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33286" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33208" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32346" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32287" stop="32229"/>
              <exon start="31168" stop="30480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32286" stop="32229"/>
              <exon start="31168" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32282" stop="32229"/>
              <exon start="31168" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32266" stop="32229"/>
              <exon start="31168" stop="30416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32259" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32253" stop="32229"/>
              <exon start="31168" stop="30401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31130" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="30653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31012" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30980" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30923" stop="30489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="30466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30749" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</gDNA_template>
            <first_frame> L  F  F  *  L  R  S  K  T  T  H  I  Y  C  Q  K  N  G  S  S  L  T  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  Y  L  *  T  S  L  Q  A  I  *  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  *  N  G  A  K  E  L  S  C  C  V  I  S  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  Y  *  *  G  G  A  A  V  *  R  W  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  S  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  T  I  Q  R  L  L  C  *  *  K  K  :  E  T  C  Q  Y  Q  E  H  G  Q  Q  C  S  K  M  C  H  *  S  H  S  *  C  S  T  E  R  R  D  Q  R  G  *  R  S  L  H  C  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  I  L  N  F  V  I  L  S  V  E  G  F  *  E  N  *  *  K  Y  G  C  Y  F  D  *  K  G  K  T  L  *  V  L  *  K  K  N  I  F  L  L  G  L  K  F  I  T  R  F  T  F  I  *  K  *  *  C  S  L  D  V  Q  *  L  N  M  D  F  P  V  R  S  L  L  K  N  *  L  H  C  L  G  *  N  C  H </first_frame>
            <second_frame>  F  S  F  N  F  A  Q  K  Q  H  T  F  I  V  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  D  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  R  G  S  K  K  T  D  R  S  M  V  V  I  L  I  E  K  G  K  P  C  K  F  Y  R  K  K  T  F  F  F  L  D  S  N  S  L  Q  D  L  H  L  S  E  N  N  D  V  L  L  M  Y  N  S  *  T  W  I  F  L  *  D  H  Y  *  R  I  N  C  I  V  W  A  K  I  V   </second_frame>
            <third_frame>   F  L  L  T  S  L  K  N  N  T  H  L  L  S  K  K  W  I  F  S  Y  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  L  S  L  N  F  A  P  S  D  L  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  L  E  W  G  K  G  T  *  L  L  C  H  L  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  L  L  I  R  W  C  S  S  I  E  V  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  L  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  N  Y  S  K  T  T  L  L  M  K  E   : R  N  L  P  I  P  R  A  W  T  A  M  L  *  N  V  P  L  I  T  F  L  M  L  N  R  K  E  R  S  T  R  I  T  F  F  T  L  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  H  S  K  L  C  N  T  I  S  *  G  V  L  R  K  L  I  E  V  W  L  L  F  *  L  K  R  E  N  L  V  S  F  I  E  K  K  H  F  S  S  W  T  Q  I  H  Y  K  I  Y  I  Y  L  K  I  M  M  F  S  *  C  T  I  V  E  H  G  F  S  C  K  I  I  I  E  E  L  I  A  L  F  G  L  K  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33921" stop="33089"/>
                    <exon start="32362" stop="32229"/>
                    <exon start="31168" stop="30570"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1563</number_coding_nucleotides>
                  <number_encoded_amino_acids>521</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFNFAQKQHTFIVKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33995" e_stop="33952"/>
            <exon e_start="33877" e_stop="33089"/>
            <exon e_start="32362" e_stop="32229"/>
            <exon e_start="31168" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.656" acc_prob="0.000" e_score="0.611"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.611">
            <gDNA_exon_boundary e_start="33995" e_stop="33952" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.656" acc_prob="0.000">
            <gDNA_intron_boundary i_start="33951" i_stop="33878" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="33877" e_stop="33089" e_length="789"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32362" e_stop="32229" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="31168" e_stop="30319" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33995" stop="33952"/>
              <exon start="33877" stop="33269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407959" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33987" stop="33952"/>
              <exon start="33877" stop="33200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406967" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33987" stop="33952"/>
              <exon start="33877" stop="33373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480999" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33877" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33839" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33824" stop="33192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33804" stop="33517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33089"/>
              <exon start="32362" stop="32293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33743" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33729" stop="33222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33538" stop="33089"/>
              <exon start="32362" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33525" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33521" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33520" stop="33089"/>
              <exon start="32362" stop="32287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33513" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33441" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33428" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33411" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33408" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33405" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33401" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33396" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33370" stop="33089"/>
              <exon start="32362" stop="32239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33326" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33310" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33286" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33208" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32346" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32287" stop="32229"/>
              <exon start="31168" stop="30480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32286" stop="32229"/>
              <exon start="31168" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32282" stop="32229"/>
              <exon start="31168" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32266" stop="32229"/>
              <exon start="31168" stop="30416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32259" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32253" stop="32229"/>
              <exon start="31168" stop="30401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31130" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="30653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31012" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30980" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30923" stop="30489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="30466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30749" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCTTCACCTAACCCCCATCTTTCTCCTCTATAAATACTCA : AAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</gDNA_template>
            <first_frame> *  L  F  T  *  P  P  S  F  S  S  I  N  T  Q :   K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  D  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  R  G  S  K  K  T  D  R  S  M  V  V  I  L  I  E  K  G  K  P  C  K  F  Y  R  K  K  T  F  F  F  L  D  S  N  S  L  Q  D  L  H  L  S  E  N  N  D  V  L  L  M  Y  N  S  *  T  W  I  F  L  *  D  H  Y  *  R  I  N  C  I  V  W  A  K  I  V   </first_frame>
            <second_frame>  N  S  S  P  N  P  H  L  S  P  L  *  I  L   : K  K  W  I  F  S  Y  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  L  S  L  N  F  A  P  S  D  L  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  L  E  W  G  K  G  T  *  L  L  C  H  L  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  L  L  I  R  W  C  S  S  I  E  V  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  L  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  N  Y  S  K  T  T  L  L  M  K  E   : R  N  L  P  I  P  R  A  W  T  A  M  L  *  N  V  P  L  I  T  F  L  M  L  N  R  K  E  R  S  T  R  I  T  F  F  T  L  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  H  S  K  L  C  N  T  I  S  *  G  V  L  R  K  L  I  E  V  W  L  L  F  *  L  K  R  E  N  L  V  S  F  I  E  K  K  H  F  S  S  W  T  Q  I  H  Y  K  I  Y  I  Y  L  K  I  M  M  F  S  *  C  T  I  V  E  H  G  F  S  C  K  I  I  I  E  E  L  I  A  L  F  G  L  K  L  S  </second_frame>
            <third_frame>   T  L  H  L  T  P  I  F  L  L  Y  K  Y  S  :  K  N  G  S  S  L  T  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  Y  L  *  T  S  L  Q  A  I  *  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  *  N  G  A  K  E  L  S  C  C  V  I  S  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  Y  *  *  G  G  A  A  V  *  R  W  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  S  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  T  I  Q  R  L  L  C  *  *  K  K  :  E  T  C  Q  Y  Q  E  H  G  Q  Q  C  S  K  M  C  H  *  S  H  S  *  C  S  T  E  R  R  D  Q  R  G  *  R  S  L  H  C  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  I  L  N  F  V  I  L  S  V  E  G  F  *  E  N  *  *  K  Y  G  C  Y  F  D  *  K  G  K  T  L  *  V  L  *  K  K  N  I  F  L  L  G  L  K  F  I  T  R  F  T  F  I  *  K  *  *  C  S  L  D  V  Q  *  L  N  M  D  F  P  V  R  S  L  L  K  N  *  L  H  C  L  G  *  N  C  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33980" stop="33952"/>
                    <exon start="33877" stop="33089"/>
                    <exon start="32362" stop="32229"/>
                    <exon start="31168" stop="30570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1548</number_coding_nucleotides>
                  <number_encoded_amino_acids>516</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPSFSSINTQKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="35739" e_stop="35710"/>
            <exon e_start="33881" e_stop="33089"/>
            <exon e_start="32362" e_stop="32229"/>
            <exon e_start="31168" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.000" e_score="0.633"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.633">
            <gDNA_exon_boundary e_start="35739" e_stop="35710" e_length="30"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.000">
            <gDNA_intron_boundary i_start="35709" i_stop="33882" i_length="1828"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="33881" e_stop="33089" e_length="793"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32362" e_stop="32229" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="31168" e_stop="30319" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35739" stop="35710"/>
              <exon start="33881" stop="33417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33877" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33839" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33824" stop="33192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33804" stop="33517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33089"/>
              <exon start="32362" stop="32293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33743" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33729" stop="33222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33538" stop="33089"/>
              <exon start="32362" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33525" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33521" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33520" stop="33089"/>
              <exon start="32362" stop="32287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33513" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33441" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33428" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33411" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33408" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33405" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33401" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33396" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33370" stop="33089"/>
              <exon start="32362" stop="32239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33326" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33310" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33286" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33208" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32346" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32287" stop="32229"/>
              <exon start="31168" stop="30480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32286" stop="32229"/>
              <exon start="31168" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32282" stop="32229"/>
              <exon start="31168" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32266" stop="32229"/>
              <exon start="31168" stop="30416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32259" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32253" stop="32229"/>
              <exon start="31168" stop="30401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31130" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="30653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31012" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30980" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30923" stop="30489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="30466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30749" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCATCGTCTTTCTTCTTCTTCGAAACACC : TCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</gDNA_template>
            <first_frame> A  I  V  F  L  L  L  R  N  T  :  S  K  K  W  I  F  S  Y  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  L  S  L  N  F  A  P  S  D  L  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  L  E  W  G  K  G  T  *  L  L  C  H  L  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  L  L  I  R  W  C  S  S  I  E  V  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  L  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  N  Y  S  K  T  T  L  L  M  K  E   : R  N  L  P  I  P  R  A  W  T  A  M  L  *  N  V  P  L  I  T  F  L  M  L  N  R  K  E  R  S  T  R  I  T  F  F  T  L  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  H  S  K  L  C  N  T  I  S  *  G  V  L  R  K  L  I  E  V  W  L  L  F  *  L  K  R  E  N  L  V  S  F  I  E  K  K  H  F  S  S  W  T  Q  I  H  Y  K  I  Y  I  Y  L  K  I  M  M  F  S  *  C  T  I  V  E  H  G  F  S  C  K  I  I  I  E  E  L  I  A  L  F  G  L  K  L  S  </first_frame>
            <second_frame>  P  S  S  F  F  F  F  E  T  P :   Q  K  N  G  S  S  L  T  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  Y  L  *  T  S  L  Q  A  I  *  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  *  N  G  A  K  E  L  S  C  C  V  I  S  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  Y  *  *  G  G  A  A  V  *  R  W  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  S  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  T  I  Q  R  L  L  C  *  *  K  K  :  E  T  C  Q  Y  Q  E  H  G  Q  Q  C  S  K  M  C  H  *  S  H  S  *  C  S  T  E  R  R  D  Q  R  G  *  R  S  L  H  C  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  I  L  N  F  V  I  L  S  V  E  G  F  *  E  N  *  *  K  Y  G  C  Y  F  D  *  K  G  K  T  L  *  V  L  *  K  K  N  I  F  L  L  G  L  K  F  I  T  R  F  T  F  I  *  K  *  *  C  S  L  D  V  Q  *  L  N  M  D  F  P  V  R  S  L  L  K  N  *  L  H  C  L  G  *  N  C  H </second_frame>
            <third_frame>   H  R  L  S  S  S  S  K  H   : L  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  D  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  R  G  S  K  K  T  D  R  S  M  V  V  I  L  I  E  K  G  K  P  C  K  F  Y  R  K  K  T  F  F  F  L  D  S  N  S  L  Q  D  L  H  L  S  E  N  N  D  V  L  L  M  Y  N  S  *  T  W  I  F  L  *  D  H  Y  *  R  I  N  C  I  V  W  A  K  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35737" stop="35710"/>
                    <exon start="33881" stop="33089"/>
                    <exon start="32362" stop="32229"/>
                    <exon start="31168" stop="30570"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1551</number_coding_nucleotides>
                  <number_encoded_amino_acids>517</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HRLSSSSKHLKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="40080" e_stop="39946"/>
            <exon e_start="33882" e_stop="33089"/>
            <exon e_start="32362" e_stop="32229"/>
            <exon e_start="31168" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.874"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.999"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.874">
            <gDNA_exon_boundary e_start="40080" e_stop="39946" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39945" i_stop="33883" i_length="6063"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="33882" e_stop="33089" e_length="794"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32362" e_stop="32229" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="32228" i_stop="31169" i_length="1060"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="31168" e_stop="30319" e_length="850"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40080" stop="39946"/>
              <exon start="33882" stop="33595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33877" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33839" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33824" stop="33192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33804" stop="33517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33089"/>
              <exon start="32362" stop="32293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33743" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33729" stop="33222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33538" stop="33089"/>
              <exon start="32362" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33525" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33521" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33520" stop="33089"/>
              <exon start="32362" stop="32287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33513" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33441" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33428" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33411" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245514" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33409" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33408" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33405" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33401" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33396" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33370" stop="33089"/>
              <exon start="32362" stop="32239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33326" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33310" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33286" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="31018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33208" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253071" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33207" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254527" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33153" stop="33089"/>
              <exon start="32362" stop="32229"/>
              <exon start="31168" stop="30911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32346" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32287" stop="32229"/>
              <exon start="31168" stop="30480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576290" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32286" stop="32229"/>
              <exon start="31168" stop="30645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32282" stop="32229"/>
              <exon start="31168" stop="30737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32266" stop="32229"/>
              <exon start="31168" stop="30416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712829" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32259" stop="32229"/>
              <exon start="31168" stop="30845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32253" stop="32229"/>
              <exon start="31168" stop="30401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E695383" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31130" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="30653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31012" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30980" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30923" stop="30489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="30466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30749" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGCCGTTAAACTTAACGCCGTTAACTCTCTTCACCTAACTCCTCTGTTTCCCTCCTATAAATCCTCACATTTAACATTCATGAAGCTTCAGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAA : GTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</gDNA_template>
            <first_frame> R  R  *  T  *  R  R  *  L  S  S  P  N  S  S  V  S  L  L  *  I  L  T  F  N  I  H  E  A  S  A  V  Q  K  Y  P  F  F  I  K  R  T  Q  K  K  :  V  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  D  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  R  G  S  K  K  T  D  R  S  M  V  V  I  L  I  E  K  G  K  P  C  K  F  Y  R  K  K  T  F  F  F  L  D  S  N  S  L  Q  D  L  H  L  S  E  N  N  D  V  L  L  M  Y  N  S  *  T  W  I  F  L  *  D  H  Y  *  R  I  N  C  I  V  W  A  K  I  V   </first_frame>
            <second_frame>  A  V  K  L  N  A  V  N  S  L  H  L  T  P  L  F  P  S  Y  K  S  S  H  L  T  F  M  K  L  Q  Q  Y  K  N  T  H  F  S  S  K  E  L  K  K  K :   S  K  K  W  I  F  S  Y  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  L  S  L  N  F  A  P  S  D  L  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  L  E  W  G  K  G  T  *  L  L  C  H  L  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  L  L  I  R  W  C  S  S  I  E  V  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  L  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  N  Y  S  K  T  T  L  L  M  K  E   : R  N  L  P  I  P  R  A  W  T  A  M  L  *  N  V  P  L  I  T  F  L  M  L  N  R  K  E  R  S  T  R  I  T  F  F  T  L  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  H  S  K  L  C  N  T  I  S  *  G  V  L  R  K  L  I  E  V  W  L  L  F  *  L  K  R  E  N  L  V  S  F  I  E  K  K  H  F  S  S  W  T  Q  I  H  Y  K  I  Y  I  Y  L  K  I  M  M  F  S  *  C  T  I  V  E  H  G  F  S  C  K  I  I  I  E  E  L  I  A  L  F  G  L  K  L  S  </second_frame>
            <third_frame>   P  L  N  L  T  P  L  T  L  F  T  *  L  L  C  F  P  P  I  N  P  H  I  *  H  S  *  S  F  S  S  T  K  I  P  I  F  H  Q  K  N  S  K  K   : S  Q  K  N  G  S  S  L  T  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  Y  L  *  T  S  L  Q  A  I  *  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  *  N  G  A  K  E  L  S  C  C  V  I  S  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  Y  *  *  G  G  A  A  V  *  R  W  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  S  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  T  I  Q  R  L  L  C  *  *  K  K  :  E  T  C  Q  Y  Q  E  H  G  Q  Q  C  S  K  M  C  H  *  S  H  S  *  C  S  T  E  R  R  D  Q  R  G  *  R  S  L  H  C  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  I  L  N  F  V  I  L  S  V  E  G  F  *  E  N  *  *  K  Y  G  C  Y  F  D  *  K  G  K  T  L  *  V  L  *  K  K  N  I  F  L  L  G  L  K  F  I  T  R  F  T  F  I  *  K  *  *  C  S  L  D  V  Q  *  L  N  M  D  F  P  V  R  S  L  L  K  N  *  L  H  C  L  G  *  N  C  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40020" stop="39946"/>
                    <exon start="33882" stop="33089"/>
                    <exon start="32362" stop="32229"/>
                    <exon start="31168" stop="30570"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1599</number_coding_nucleotides>
                  <number_encoded_amino_acids>533</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILTFNIHEASAVQKYPFFIKRTQKKVKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="39991" e_stop="39161"/>
            <exon e_start="38646" e_stop="38513"/>
            <exon e_start="37811" e_stop="37443"/>
            <exon e_start="37296" e_stop="37033"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.950"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="39991" e_stop="39161" e_length="831"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38646" e_stop="38513" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="37811" e_stop="37443" e_length="369"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37442" i_stop="37297" i_length="146"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37296" e_stop="37033" e_length="264"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39991" stop="39516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39981" stop="39419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39980" stop="39340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39979" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39976" stop="39372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39971" stop="39248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39969" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="39545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39964" stop="39517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39963" stop="39412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39961" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39958" stop="39595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39955" stop="39534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39852" stop="39515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39790" stop="39477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39632" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39579" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39571" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39522" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E441311" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39519" stop="39161"/>
              <exon start="38646" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="39161"/>
              <exon start="38646" stop="38548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39465" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39458" stop="39161"/>
              <exon start="38646" stop="38529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39407" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39392" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39374" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39347" stop="39161"/>
              <exon start="38646" stop="38553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39304" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39270" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38621" stop="38513"/>
              <exon start="37811" stop="37552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38555" stop="38513"/>
              <exon start="37811" stop="37463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37690" stop="37443"/>
              <exon start="37296" stop="37033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAG : CTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGA</gDNA_template>
            <first_frame> S  S  T  K  I  P  I  F  H  Q  K  N  S  K  K  N  G  S  S  L  A  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  H  L  *  T  S  F  Q  A  I  Q  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  K  N  G  A  K  E  L  S  C  C  V  I  P  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  H  *  Q  S  C  A  A  V  *  R  G  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  T  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  A  I  Q  R  L  L  C  *  *  K  K  :  E  A  C  K  Y  Q  E  Y  G  Q  Q  C  S  K  M  C  N  *  S  H  S  *  S  S  T  E  G  R  D  Q  R  G  *  R  S  L  H  R  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S :   S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  L  S  K  L  C  N  T  I  S  *  L  *  L  L  F  V  C  S  E  N  F  L  L  F  Y  V  F  H  K  S  L  I  R  L  D  S  L  *  V  L  P  I  *  C  T  M  V  I  W  L  S  D  N  C  I  I  L  T  K  I  T  Y   </first_frame>
            <second_frame>  A  V  Q  K  Y  P  F  F  I  K  R  T  Q  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  E  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E   : A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  F  L  N  F  V  I  L  S  V  N  Y  D  C  C  L  F  V  Q  K  I  F  F  S  F  M  F  F  I  K  V  L  L  D  *  I  H  Y  K  F  Y  L  Y  D  V  Q  W  *  F  G  F  L  T  I  A  L  F  *  R  K  L  L  T  </second_frame>
            <third_frame>   Q  Y  K  N  T  H  F  S  S  K  E  L  K  K  K  W  I  F  S  C  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  S  S  L  N  F  V  P  S  D  S  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  *  E  W  G  K  G  T  *  L  L  C  H  P  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  S  L  T  K  L  C  S  S  I  E  G  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  H  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  S  Y  S  K  T  T  L  L  M  K  E   : R  S  L  Q  I  P  R  V  W  T  A  M  L  *  N  V  Q  L  I  T  F  L  K  L  N  R  R  E  R  S  T  R  I  T  F  F  T  S  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  :  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  I  M  T  V  V  C  L  F  R  K  F  S  S  L  L  C  F  S  *  K  S  Y  *  T  R  F  I  I  S  F  T  Y  M  M  Y  N  G  N  L  A  F  *  Q  L  H  Y  F  D  E  N  Y  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39990" stop="39161"/>
                    <exon start="38646" stop="38513"/>
                    <exon start="37811" stop="37443"/>
                    <exon start="37296" stop="37118"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1509</number_coding_nucleotides>
                  <number_encoded_amino_acids>503</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVQKYPFFIKRTQKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILEAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEARHLGERWTVQSPHFEAFHHCDETKIFLNFVILSVNYDCCLFVQKIFFSFMFFIKVLLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="39991" e_stop="39161"/>
            <exon e_start="38646" e_stop="38047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.950"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.950">
            <gDNA_exon_boundary e_start="39991" e_stop="39161" e_length="831"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="38646" e_stop="38047" e_length="600"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39991" stop="39516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39981" stop="39419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39980" stop="39340"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39979" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39976" stop="39372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39974" stop="39539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39971" stop="39248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39969" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371494" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370978" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39968" stop="39526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39967" stop="39389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39966" stop="39497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="39545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39964" stop="39517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39963" stop="39412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39961" stop="39530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39958" stop="39595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39955" stop="39534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39949" stop="39489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39852" stop="39515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39790" stop="39477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200660" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39632" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39571" stop="39161"/>
              <exon start="38646" stop="38576"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39519" stop="39161"/>
              <exon start="38646" stop="38603"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457722" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39487" stop="39161"/>
              <exon start="38646" stop="38548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39458" stop="39161"/>
              <exon start="38646" stop="38529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39347" stop="39161"/>
              <exon start="38646" stop="38553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38628" stop="38047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321496" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGTACAAAAATACCCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTCACTAACAAAGTTGTGCAGCAGTATAGAGGGGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTGGTATGTTTAGAAATAACATATATTTGATTCTCTAGAGTATAATTTGTTCTAGTTTGGTTTAAGTGATTGCATCCTGGTTAGTATAAGGTAATTTATAAGTGAATGAAAATCCAATTCCAAATTTATATATTTTTTCTCAAAAGTAGTAGTTGAGAGTTACCAAATAAGGGCCCCAAGATTTAACTGCTTTAATGATGACAAGGACTGGTTGGTGCCTGGGCCCTGGGGGCTACCACATACCAATTTCTTGTGGTGAATAAGATGTTATGTTTACATACAAGTAGAACATGTAGTTTCCAAGATTGAAGGGGAAATAAGTACCACAAATCTTATACTACTATAAGAGTTAAAGTTCCAAACAAAGTTGGATACAATCGGGTTATTTGGGTTTTACTGAATTCATTACTTTTGGTTCAAAGTGTGCATACATATGAAAAATGAGTTCATTATATATACATTTGTAATG</gDNA_template>
            <first_frame> S  S  T  K  I  P  I  F  H  Q  K  N  S  K  K  N  G  S  S  L  A  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  H  L  *  T  S  F  Q  A  I  Q  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  K  N  G  A  K  E  L  S  C  C  V  I  P  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  H  *  Q  S  C  A  A  V  *  R  G  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  T  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  A  I  Q  R  L  L  C  *  *  K  K  :  E  A  C  K  Y  Q  E  Y  G  Q  Q  C  S  K  M  C  N  *  S  H  S  *  S  S  T  E  G  R  D  Q  R  G  *  R  S  L  H  R  *  E  H  *  C  C  W  Y  V  *  K  *  H  I  F  D  S  L  E  Y  N  L  F  *  F  G  L  S  D  C  I  L  V  S  I  R  *  F  I  S  E  *  K  S  N  S  K  F  I  Y  F  F  S  K  V  V  V  E  S  Y  Q  I  R  A  P  R  F  N  C  F  N  D  D  K  D  W  L  V  P  G  P  W  G  L  P  H  T  N  F  L  W  *  I  R  C  Y  V  Y  I  Q  V  E  H  V  V  S  K  I  E  G  E  I  S  T  T  N  L  I  L  L  *  E  L  K  F  Q  T  K  L  D  T  I  G  L  F  G  F  Y  *  I  H  Y  F  W  F  K  V  C  I  H  M  K  N  E  F  I  I  Y  T  F  V  M </first_frame>
            <second_frame>  A  V  Q  K  Y  P  F  F  I  K  R  T  Q  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  E  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A  G  M  F  R  N  N  I  Y  L  I  L  *  S  I  I  C  S  S  L  V  *  V  I  A  S  W  L  V  *  G  N  L  *  V  N  E  N  P  I  P  N  L  Y  I  F  S  Q  K  *  *  L  R  V  T  K  *  G  P  Q  D  L  T  A  L  M  M  T  R  T  G  W  C  L  G  P  G  G  Y  H  I  P  I  S  C  G  E  *  D  V  M  F  T  Y  K  *  N  M  *  F  P  R  L  K  G  K  *  V  P  Q  I  L  Y  Y  Y  K  S  *  S  S  K  Q  S  W  I  Q  S  G  Y  L  G  F  T  E  F  I  T  F  G  S  K  C  A  Y  I  *  K  M  S  S  L  Y  I  H  L  *   </second_frame>
            <third_frame>   Q  Y  K  N  T  H  F  S  S  K  E  L  K  K  K  W  I  F  S  C  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  S  S  L  N  F  V  P  S  D  S  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  *  E  W  G  K  G  T  *  L  L  C  H  P  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  S  L  T  K  L  C  S  S  I  E  G  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  H  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  S  Y  S  K  T  T  L  L  M  K  E   : R  S  L  Q  I  P  R  V  W  T  A  M  L  *  N  V  Q  L  I  T  F  L  K  L  N  R  R  E  R  S  T  R  I  T  F  F  T  S  L  R  T  L  M  L  L  V  C  L  E  I  T  Y  I  *  F  S  R  V  *  F  V  L  V  W  F  K  *  L  H  P  G  *  Y  K  V  I  Y  K  *  M  K  I  Q  F  Q  I  Y  I  F  F  L  K  S  S  S  *  E  L  P  N  K  G  P  K  I  *  L  L  *  *  *  Q  G  L  V  G  A  W  A  L  G  A  T  T  Y  Q  F  L  V  V  N  K  M  L  C  L  H  T  S  R  T  C  S  F  Q  D  *  R  G  N  K  Y  H  K  S  Y  T  T  I  R  V  K  V  P  N  K  V  G  Y  N  R  V  I  W  V  L  L  N  S  L  L  L  V  Q  S  V  H  T  Y  E  K  *  V  H  Y  I  Y  I  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39990" stop="39161"/>
                    <exon start="38646" stop="38478"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>996</number_coding_nucleotides>
                  <number_encoded_amino_acids>332</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVQKYPFFIKRTQKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILEAQQKGEINEDNVLYIVENINVAGMFRNNIYLIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="8">
          <exon_coordinates>
            <exon e_start="39975" e_stop="39544"/>
            <exon e_start="39421" e_stop="39161"/>
            <exon e_start="38646" e_stop="38513"/>
            <exon e_start="37811" e_stop="37027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="39975" e_stop="39544" e_length="432"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39543" i_stop="39422" i_length="122"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39421" e_stop="39161" e_length="261"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39160" i_stop="38647" i_length="514"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38646" e_stop="38513" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="37811" e_stop="37027" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39612"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476618" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39975" stop="39615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39972" stop="39544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201554" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39969" stop="39608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39965" stop="39545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39958" stop="39595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39573" stop="39544"/>
              <exon start="39421" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39407" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39392" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39374" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201809" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39357" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39347" stop="39161"/>
              <exon start="38646" stop="38553"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39304" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39297" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39270" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39265" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39178" stop="39161"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37413"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38621" stop="38513"/>
              <exon start="37811" stop="37552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38619" stop="38513"/>
              <exon start="37811" stop="37183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38555" stop="38513"/>
              <exon start="37811" stop="37463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37811" stop="37091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37789" stop="37290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37762" stop="37172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37718" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37687" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37677" stop="37296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37640" stop="37320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37603" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37497" stop="37033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37456" stop="37118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37432" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338012" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37423" stop="37107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37376" stop="37064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="8" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCATTTTTCATCAAAAGAACTCAAAAAAAAATGGATCTTCTCTTGCTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATCATCTCTAAACTTCGTTCCAAGCGATTCAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTAAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCCCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACT : GAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCACAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAGCTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGAGTTGAT</gDNA_template>
            <first_frame> P  F  F  I  K  R  T  Q  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  :  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  T  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  A  I  Q  R  L  L  C  *  *  K  K  :  E  A  C  K  Y  Q  E  Y  G  Q  Q  C  S  K  M  C  N  *  S  H  S  *  S  S  T  E  G  R  D  Q  R  G  *  R  S  L  H  R  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  F  L  N  F  V  I  L  S  V  N  Y  D  C  C  L  F  V  Q  K  I  F  F  S  F  M  F  F  I  K  V  L  L  D  *  I  H  Y  K  F  Y  L  Y  D  V  Q  W  *  F  G  F  L  T  I  A  L  F  *  R  K  L  L  T  S  *  </first_frame>
            <second_frame>  H  F  S  S  K  E  L  K  K  K  W  I  F  S  C  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  S  S  L  N  F  V  P  S  D  S  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  *  E  W  G  K  G  T  *  L  L  C  H  P  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L :   K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  E  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  I  M  T  V  V  C  L  F  R  K  F  S  S  L  L  C  F  S  *  K  S  Y  *  T  R  F  I  I  S  F  T  Y  M  M  Y  N  G  N  L  A  F  *  Q  L  H  Y  F  D  E  N  Y  L  R  V  D </second_frame>
            <third_frame>   I  F  H  Q  K  N  S  K  K  N  G  S  S  L  A  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  H  L  *  T  S  F  Q  A  I  Q  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  K  N  G  A  K  E  L  S  C  C  V  I  P  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D   : *  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  H  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  S  Y  S  K  T  T  L  L  M  K  E   : R  S  L  Q  I  P  R  V  W  T  A  M  L  *  N  V  Q  L  I  T  F  L  K  L  N  R  R  E  R  S  T  R  I  T  F  F  T  S  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  L  S  K  L  C  N  T  I  S  *  L  *  L  L  F  V  C  S  E  N  F  L  L  F  Y  V  F  H  K  S  L  I  R  L  D  S  L  *  V  L  P  I  *  C  T  M  V  I  W  L  S  D  N  C  I  I  L  T  K  I  T  Y  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="8" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39545" stop="39544"/>
                    <exon start="39421" stop="39161"/>
                    <exon start="38646" stop="38513"/>
                    <exon start="37811" stop="37213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>993</number_coding_nucleotides>
                  <number_encoded_amino_acids>331</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILEAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="8" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39975" stop="39544"/>
                    <exon start="39421" stop="39395"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFFIKRTQKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTEKIAAYDV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="9">
          <exon_coordinates>
            <exon e_start="33922" e_stop="33089"/>
            <exon e_start="32362" e_stop="31677"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.999"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="33922" e_stop="33089" e_length="834"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33088" i_stop="32363" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="32362" e_stop="31677" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33922" stop="33453"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33916" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33909" stop="33458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="33256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33897" stop="33417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33893" stop="33457"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33877" stop="33212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589992" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33856" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33839" stop="33172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33824" stop="33192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33804" stop="33517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33803" stop="33261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33089"/>
              <exon start="32362" stop="32293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33759" stop="33243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33743" stop="33267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33729" stop="33222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33538" stop="33089"/>
              <exon start="32362" stop="32231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33520" stop="33089"/>
              <exon start="32362" stop="32287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33401" stop="33091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300973" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33391" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33390" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33370" stop="33089"/>
              <exon start="32362" stop="32239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33357" stop="33133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474271" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33154" stop="33089"/>
              <exon start="32362" stop="32229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32361" stop="31677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316965" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="9" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTCTTTTAACTTCGCTCAAAAACAACACACATTTATTGTCAAAAAAATGGATCTTCTCTTACTGGAGAAGACCTTAATAGGTCTTTTCTTTGCCATTTTAATCGCTATTATTATCTCTAAACTTCGCTCCAAGCGATTTAAACTACCCCCAGGTCCAATTCCAGTTCCAATTTTTGGGAATTGGCTTCAAGTTGGTGATGATTTGAACCATAGAAACCTTACTGAGTATGCTAAAAAATTTGGTGATGTGTTCTTGCTTAGAATGGGGCAAAGGAACTTAGCTGTTGTGTCATCTCCTGAATTAGCTAAAGAAGTTTTACACACACAAGGGGTTGAATTTGGTTCAAGAACAAGAAATGTTGTTTTTGATATTTTTACAGGGAAGGGTCAAGATATGGTTTTTACAGTGTATGGTGAGCACTGGAGGAAAATGAGGAGGATTATGACTGTACCCTTTTTTACTAATAAGGTGGTGCAGCAGTATAGAGGTGGGTGGGAGTCTGAGGCTGCCAGTGTAGTTGAGGATGTGAAGAAAAACCCTGAATCTGCTACAAATGGGATTGTTTTGAGGAAAAGATTGCAGCTTATGATGTATAATAACATGTTTAGGATTATGTTTGATAGGAGATTTGAGAGTGAAGATGATCCCCTTTTTGTTAAGCTTAGGGCTTTGAATGGTGAGAGGAGTAGATTGGCTCAGAGCTTTGAGTACAACTATGGTGATTTTATCCCAATTTTGAGGCCTTTCTTGAGGGGTTACTTGAAGATTTGTAAGGAGGTTAAGGAGAAGAGGTTGAAACTATTCAAAGACTACTTTGTTGATGAAAGAAA : GAAACTTGCCAATACCAAGAGCATGGACAGCAATGCTCTAAAATGTGCCATTGATCACATTCTTGATGCTCAACAGAAAGGAGAGATCAACGAGGATAACGTTCTTTACATTGTTGAGAACATTAATGTTGCTGGTATGTTTCAAAATGACTCTCGATATACTTTGTTCTAGTTTGGTTTAAAGTATGGGATTCTCCTTGTGAAAATGTTGAAAAATAACTTTTTAACAATACTTGGTTTGGTATCTATCCTTGTGAGTTCCTTTTGGATAAGAGTAACAGAATGGTGTGTTTGACTGGTAAACCAAGAATAACAATGTCAACCTCCACATATTTTGTTTTTGTACGGTATTTGGATTTGCACCAAAGTTTAAGTAACTTATTATCAGTTGTTACATGATTTTTAATCATCCTAGTCAGAAACTAAGAAAAGTAATTTATAAGTGAATGCATTTGGGTGGGGAACAGCAACTGAAACAATTGCTAAAGAAAAGGAAGAATCCACCCAAGGGGCTCGCGTGTGGTCAGCTAGTTAGTGAGACAATCACTTTGCACGGGGATGATGAATAGCTGGTCTTAGAGGATGATTAACTGCACTAGGACTGATACATGGCCCAGATTCCTTTGAGGGGCAGCAGTGGGGAAGTTTCCGGAATGCCGAAAGCCTGATGGATCCCTTTTCCGATT</gDNA_template>
            <first_frame> L  F  F  *  L  R  S  K  T  T  H  I  Y  C  Q  K  N  G  S  S  L  T  G  E  D  L  N  R  S  F  L  C  H  F  N  R  Y  Y  Y  L  *  T  S  L  Q  A  I  *  T  T  P  R  S  N  S  S  S  N  F  W  E  L  A  S  S  W  *  *  F  E  P  *  K  P  Y  *  V  C  *  K  I  W  *  C  V  L  A  *  N  G  A  K  E  L  S  C  C  V  I  S  *  I  S  *  R  S  F  T  H  T  R  G  *  I  W  F  K  N  K  K  C  C  F  *  Y  F  Y  R  E  G  S  R  Y  G  F  Y  S  V  W  *  A  L  E  E  N  E  E  D  Y  D  C  T  L  F  Y  *  *  G  G  A  A  V  *  R  W  V  G  V  *  G  C  Q  C  S  *  G  C  E  E  K  P  *  I  C  Y  K  W  D  C  F  E  E  K  I  A  A  Y  D  V  *  *  H  V  *  D  Y  V  *  *  E  I  *  E  *  R  *  S  P  F  C  *  A  *  G  F  E  W  *  E  E  *  I  G  S  E  L  *  V  Q  L  W  *  F  Y  P  N  F  E  A  F  L  E  G  L  L  E  D  L  *  G  G  *  G  E  E  V  E  T  I  Q  R  L  L  C  *  *  K  K  :  E  T  C  Q  Y  Q  E  H  G  Q  Q  C  S  K  M  C  H  *  S  H  S  *  C  S  T  E  R  R  D  Q  R  G  *  R  S  L  H  C  *  E  H  *  C  C  W  Y  V  S  K  *  L  S  I  Y  F  V  L  V  W  F  K  V  W  D  S  P  C  E  N  V  E  K  *  L  F  N  N  T  W  F  G  I  Y  P  C  E  F  L  L  D  K  S  N  R  M  V  C  L  T  G  K  P  R  I  T  M  S  T  S  T  Y  F  V  F  V  R  Y  L  D  L  H  Q  S  L  S  N  L  L  S  V  V  T  *  F  L  I  I  L  V  R  N  *  E  K  *  F  I  S  E  C  I  W  V  G  N  S  N  *  N  N  C  *  R  K  G  R  I  H  P  R  G  S  R  V  V  S  *  L  V  R  Q  S  L  C  T  G  M  M  N  S  W  S  *  R  M  I  N  C  T  R  T  D  T  W  P  R  F  L  *  G  A  A  V  G  K  F  P  E  C  R  K  P  D  G  S  L  F  R   </first_frame>
            <second_frame>  F  S  F  N  F  A  Q  K  Q  H  T  F  I  V  K  K  M  D  L  L  L  L  E  K  T  L  I  G  L  F  F  A  I  L  I  A  I  I  I  S  K  L  R  S  K  R  F  K  L  P  P  G  P  I  P  V  P  I  F  G  N  W  L  Q  V  G  D  D  L  N  H  R  N  L  T  E  Y  A  K  K  F  G  D  V  F  L  L  R  M  G  Q  R  N  L  A  V  V  S  S  P  E  L  A  K  E  V  L  H  T  Q  G  V  E  F  G  S  R  T  R  N  V  V  F  D  I  F  T  G  K  G  Q  D  M  V  F  T  V  Y  G  E  H  W  R  K  M  R  R  I  M  T  V  P  F  F  T  N  K  V  V  Q  Q  Y  R  G  G  W  E  S  E  A  A  S  V  V  E  D  V  K  K  N  P  E  S  A  T  N  G  I  V  L  R  K  R  L  Q  L  M  M  Y  N  N  M  F  R  I  M  F  D  R  R  F  E  S  E  D  D  P  L  F  V  K  L  R  A  L  N  G  E  R  S  R  L  A  Q  S  F  E  Y  N  Y  G  D  F  I  P  I  L  R  P  F  L  R  G  Y  L  K  I  C  K  E  V  K  E  K  R  L  K  L  F  K  D  Y  F  V  D  E  R  K :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  D  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A  G  M  F  Q  N  D  S  R  Y  T  L  F  *  F  G  L  K  Y  G  I  L  L  V  K  M  L  K  N  N  F  L  T  I  L  G  L  V  S  I  L  V  S  S  F  W  I  R  V  T  E  W  C  V  *  L  V  N  Q  E  *  Q  C  Q  P  P  H  I  L  F  L  Y  G  I  W  I  C  T  K  V  *  V  T  Y  Y  Q  L  L  H  D  F  *  S  S  *  S  E  T  K  K  S  N  L  *  V  N  A  F  G  W  G  T  A  T  E  T  I  A  K  E  K  E  E  S  T  Q  G  A  R  V  W  S  A  S  *  *  D  N  H  F  A  R  G  *  *  I  A  G  L  R  G  *  L  T  A  L  G  L  I  H  G  P  D  S  F  E  G  Q  Q  W  G  S  F  R  N  A  E  S  L  M  D  P  F  S  D  </second_frame>
            <third_frame>   F  L  L  T  S  L  K  N  N  T  H  L  L  S  K  K  W  I  F  S  Y  W  R  R  P  *  *  V  F  S  L  P  F  *  S  L  L  L  S  L  N  F  A  P  S  D  L  N  Y  P  Q  V  Q  F  Q  F  Q  F  L  G  I  G  F  K  L  V  M  I  *  T  I  E  T  L  L  S  M  L  K  N  L  V  M  C  S  C  L  E  W  G  K  G  T  *  L  L  C  H  L  L  N  *  L  K  K  F  Y  T  H  K  G  L  N  L  V  Q  E  Q  E  M  L  F  L  I  F  L  Q  G  R  V  K  I  W  F  L  Q  C  M  V  S  T  G  G  K  *  G  G  L  *  L  Y  P  F  L  L  I  R  W  C  S  S  I  E  V  G  G  S  L  R  L  P  V  *  L  R  M  *  R  K  T  L  N  L  L  Q  M  G  L  F  *  G  K  D  C  S  L  *  C  I  I  T  C  L  G  L  C  L  I  G  D  L  R  V  K  M  I  P  F  L  L  S  L  G  L  *  M  V  R  G  V  D  W  L  R  A  L  S  T  T  M  V  I  L  S  Q  F  *  G  L  S  *  G  V  T  *  R  F  V  R  R  L  R  R  R  G  *  N  Y  S  K  T  T  L  L  M  K  E   : R  N  L  P  I  P  R  A  W  T  A  M  L  *  N  V  P  L  I  T  F  L  M  L  N  R  K  E  R  S  T  R  I  T  F  F  T  L  L  R  T  L  M  L  L  V  C  F  K  M  T  L  D  I  L  C  S  S  L  V  *  S  M  G  F  S  L  *  K  C  *  K  I  T  F  *  Q  Y  L  V  W  Y  L  S  L  *  V  P  F  G  *  E  *  Q  N  G  V  F  D  W  *  T  K  N  N  N  V  N  L  H  I  F  C  F  C  T  V  F  G  F  A  P  K  F  K  *  L  I  I  S  C  Y  M  I  F  N  H  P  S  Q  K  L  R  K  V  I  Y  K  *  M  H  L  G  G  E  Q  Q  L  K  Q  L  L  K  K  R  K  N  P  P  K  G  L  A  C  G  Q  L  V  S  E  T  I  T  L  H  G  D  D  E  *  L  V  L  E  D  D  *  L  H  *  D  *  Y  M  A  Q  I  P  L  R  G  S  S  G  E  V  S  G  M  P  K  A  *  W  I  P  F  P  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="9" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33921" stop="33089"/>
                    <exon start="32362" stop="32191"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1002</number_coding_nucleotides>
                  <number_encoded_amino_acids>334</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSFNFAQKQHTFIVKKMDLLLLEKTLIGLFFAILIAIIISKLRSKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTEYAKKFGDVFLLRMGQRNLAVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRGGWESEAASVVEDVKKNPESATNGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFVKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKEKRLKLFKDYFVDERKKLANTKSMDSNALKCAIDHILDAQQKGEINEDNVLYIVENINVAGMFQNDSRYTLF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="10">
          <exon_coordinates>
            <exon e_start="38911" e_stop="38844"/>
            <exon e_start="38646" e_stop="38513"/>
            <exon e_start="37811" e_stop="37027"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.922" acc_prob="0.991" e_score="0.897"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="38911" e_stop="38844" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="0.922" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38843" i_stop="38647" i_length="197"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38646" e_stop="38513" e_length="134"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="38512" i_stop="37812" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="37811" e_stop="37027" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38911" stop="38844"/>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38646" stop="38513"/>
              <exon start="37811" stop="37429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38621" stop="38513"/>
              <exon start="37811" stop="37552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38619" stop="38513"/>
              <exon start="37811" stop="37183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38555" stop="38513"/>
              <exon start="37811" stop="37463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37811" stop="37091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E691770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37789" stop="37290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37762" stop="37172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37749" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37718" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37687" stop="37193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37677" stop="37296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37640" stop="37320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37603" stop="37038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37497" stop="37033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37456" stop="37118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37432" stop="37044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338012" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37423" stop="37107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37376" stop="37064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233861" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="10" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGCAATTCTCCTGTGGCAATTAGAGGTTTGTCGTAACGGTGGCCTACAGTGCCCTAGCTTGCAGTG : GAAGCTTGCAAATACCAAGAGTATGGACAGCAATGCTCTAAAATGTGCAATTGATCACATTCTTGAAGCTCAACAGAAGGGAGAGATCAACGAGGATAACGTTCTTTACATCGTTGAGAACATTAATGTTGCTG : CAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCTTTCTAAACTTTGTAATACTATCAGTTAATTATGACTGTTGTTTGTTTGTTCAGAAAATTTTCTTCTCTTTTATGTTTTTCATAAAAGTCTTATTAGACTAGATTCATTATAAGTTTTACCTATATGATGTACAATGGTAATTTGGCTTTCTGACAATTGCATTATTTTGACGAAAATTACTTACGAGTTGAT</gDNA_template>
            <first_frame> F  A  I  L  L  W  Q  L  E  V  C  R  N  G  G  L  Q  C  P  S  L  Q  W :   K  L  A  N  T  K  S  M  D  S  N  A  L  K  C  A  I  D  H  I  L  E  A  Q  Q  K  G  E  I  N  E  D  N  V  L  Y  I  V  E  N  I  N  V  A   : A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  I  M  T  V  V  C  L  F  R  K  F  S  S  L  L  C  F  S  *  K  S  Y  *  T  R  F  I  I  S  F  T  Y  M  M  Y  N  G  N  L  A  F  *  Q  L  H  Y  F  D  E  N  Y  L  R  V  D </first_frame>
            <second_frame>  L  Q  F  S  C  G  N  *  R  F  V  V  T  V  A  Y  S  A  L  A  C  S   : G  S  L  Q  I  P  R  V  W  T  A  M  L  *  N  V  Q  L  I  T  F  L  K  L  N  R  R  E  R  S  T  R  I  T  F  F  T  S  L  R  T  L  M  L  L  :  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  L  S  K  L  C  N  T  I  S  *  L  *  L  L  F  V  C  S  E  N  F  L  L  F  Y  V  F  H  K  S  L  I  R  L  D  S  L  *  V  L  P  I  *  C  T  M  V  I  W  L  S  D  N  C  I  I  L  T  K  I  T  Y  E  L   </second_frame>
            <third_frame>   C  N  S  P  V  A  I  R  G  L  S  *  R  W  P  T  V  P  *  L  A  V  :  E  A  C  K  Y  Q  E  Y  G  Q  Q  C  S  K  M  C  N  *  S  H  S  *  S  S  T  E  G  R  D  Q  R  G  *  R  S  L  H  R  *  E  H  *  C  C  C :   N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  F  L  N  F  V  I  L  S  V  N  Y  D  C  C  L  F  V  Q  K  I  F  F  S  F  M  F  F  I  K  V  L  L  D  *  I  H  Y  K  F  Y  L  Y  D  V  Q  W  *  F  G  F  L  T  I  A  L  F  *  R  K  L  L  T  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="10" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38911" stop="38844"/>
                    <exon start="38646" stop="38513"/>
                    <exon start="37811" stop="37213"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FAILLWQLEVCRNGGLQCPSLQWKLANTKSMDSNALKCAIDHILEAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="11">
          <exon_coordinates>
            <exon e_start="31239" e_stop="30319"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="31239" e_stop="30319" e_length="921"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31239" stop="30855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31146" stop="30647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31130" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462920" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31034" stop="30653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31012" stop="30388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31010" stop="30389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30997" stop="30677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30980" stop="30319"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30954" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30923" stop="30489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242269" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30918" stop="30408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221241" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30811" stop="30466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216330" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30749" stop="30327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228308" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="11" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTATATCTGTTCATAAACTTCTTGGTTAGTTGATTATTCAGCTGATATGCTTAATTCTTGTCATGAACAGCAATCGAAACAACATTGTGGTCAATTGAGTGGGGTATCGCGGAACTAGTCAACCACCCTCACATCCAAAAGAAACTCCGAGACGAGATTGATACAGTTCTTGGACCAGGAGTGCAAGTGAGTGAGCCAGACATGCCCAAGCTTCCATACCTTCAGGCTGTGATCAAGGAGACTCTTAGACTCCGGATGGCAATTCCTCTTTTAGTCCCACACATGAACCTTCATGATGCAAAGCTTGCTGGATACGATATTCCAGCTGAGAGCAAAATCTTAGTTAACGCTTGGTGGCTAGCTAACAACCCCGCCCACTGGAAGAAACCTGAAGAGTTCAGACCTGAGAGGTTCTTGGAAGAGGAGAAACACGTTGAAGCCAATGGCAACGACTTCAGATTTCTTCCTTTCGGTGTTGGCAGGAGGAGTTGCCCCGGAATTATCCTTGCATTGCCAATTCTTGGCATCACCATTGGACGTTTGGTGCAGAACTTTGAGATGTTGCCTCCTCCAGGGCAGTCGAAGCTCGACACCTCGGAGAAAGGTGGACAGTTCAGTCTCCACATTTTGAAGCATTCCACCATTGTGATGAAACCAAGATCATTCTAAACTTTGTAATACTATCAGTTGAGGGGTTCTAAGAAAACTGATAGAAGTATGGTTGTTATTTTGATTGAAAAGGGAAAACCTTGTAAGTTTTATAGAAAAAAAACATTTTTCTTCTTGGACTCAAATTCATTACAAGATTTACATTTATCTGAAAATAATGATGTTCTCTTGATGTACAATAGTTGAACATGGATTTTCCTGTAAGATCATTATTGAAGAATTAATTGCATTGTTTGGGCTAAAATTGTCAT</gDNA_template>
            <first_frame> F  I  S  V  H  K  L  L  G  *  L  I  I  Q  L  I  C  L  I  L  V  M  N  S  N  R  N  N  I  V  V  N  *  V  G  Y  R  G  T  S  Q  P  P  S  H  P  K  E  T  P  R  R  D  *  Y  S  S  W  T  R  S  A  S  E  *  A  R  H  A  Q  A  S  I  P  S  G  C  D  Q  G  D  S  *  T  P  D  G  N  S  S  F  S  P  T  H  E  P  S  *  C  K  A  C  W  I  R  Y  S  S  *  E  Q  N  L  S  *  R  L  V  A  S  *  Q  P  R  P  L  E  E  T  *  R  V  Q  T  *  E  V  L  G  R  G  E  T  R  *  S  Q  W  Q  R  L  Q  I  S  S  F  R  C  W  Q  E  E  L  P  R  N  Y  P  C  I  A  N  S  W  H  H  H  W  T  F  G  A  E  L  *  D  V  A  S  S  R  A  V  E  A  R  H  L  G  E  R  W  T  V  Q  S  P  H  F  E  A  F  H  H  C  D  E  T  K  I  I  L  N  F  V  I  L  S  V  E  G  F  *  E  N  *  *  K  Y  G  C  Y  F  D  *  K  G  K  T  L  *  V  L  *  K  K  N  I  F  L  L  G  L  K  F  I  T  R  F  T  F  I  *  K  *  *  C  S  L  D  V  Q  *  L  N  M  D  F  P  V  R  S  L  L  K  N  *  L  H  C  L  G  *  N  C  H </first_frame>
            <second_frame>  L  Y  L  F  I  N  F  L  V  S  *  L  F  S  *  Y  A  *  F  L  S  *  T  A  I  E  T  T  L  W  S  I  E  W  G  I  A  E  L  V  N  H  P  H  I  Q  K  K  L  R  D  E  I  D  T  V  L  G  P  G  V  Q  V  S  E  P  D  M  P  K  L  P  Y  L  Q  A  V  I  K  E  T  L  R  L  R  M  A  I  P  L  L  V  P  H  M  N  L  H  D  A  K  L  A  G  Y  D  I  P  A  E  S  K  I  L  V  N  A  W  W  L  A  N  N  P  A  H  W  K  K  P  E  E  F  R  P  E  R  F  L  E  E  E  K  H  V  E  A  N  G  N  D  F  R  F  L  P  F  G  V  G  R  R  S  C  P  G  I  I  L  A  L  P  I  L  G  I  T  I  G  R  L  V  Q  N  F  E  M  L  P  P  P  G  Q  S  K  L  D  T  S  E  K  G  G  Q  F  S  L  H  I  L  K  H  S  T  I  V  M  K  P  R  S  F  *  T  L  *  Y  Y  Q  L  R  G  S  K  K  T  D  R  S  M  V  V  I  L  I  E  K  G  K  P  C  K  F  Y  R  K  K  T  F  F  F  L  D  S  N  S  L  Q  D  L  H  L  S  E  N  N  D  V  L  L  M  Y  N  S  *  T  W  I  F  L  *  D  H  Y  *  R  I  N  C  I  V  W  A  K  I  V   </second_frame>
            <third_frame>   Y  I  C  S  *  T  S  W  L  V  D  Y  S  A  D  M  L  N  S  C  H  E  Q  Q  S  K  Q  H  C  G  Q  L  S  G  V  S  R  N  *  S  T  T  L  T  S  K  R  N  S  E  T  R  L  I  Q  F  L  D  Q  E  C  K  *  V  S  Q  T  C  P  S  F  H  T  F  R  L  *  S  R  R  L  L  D  S  G  W  Q  F  L  F  *  S  H  T  *  T  F  M  M  Q  S  L  L  D  T  I  F  Q  L  R  A  K  S  *  L  T  L  G  G  *  L  T  T  P  P  T  G  R  N  L  K  S  S  D  L  R  G  S  W  K  R  R  N  T  L  K  P  M  A  T  T  S  D  F  F  L  S  V  L  A  G  G  V  A  P  E  L  S  L  H  C  Q  F  L  A  S  P  L  D  V  W  C  R  T  L  R  C  C  L  L  Q  G  S  R  S  S  T  P  R  R  K  V  D  S  S  V  S  T  F  *  S  I  P  P  L  *  *  N  Q  D  H  S  K  L  C  N  T  I  S  *  G  V  L  R  K  L  I  E  V  W  L  L  F  *  L  K  R  E  N  L  V  S  F  I  E  K  K  H  F  S  S  W  T  Q  I  H  Y  K  I  Y  I  Y  L  K  I  M  M  F  S  *  C  T  I  V  E  H  G  F  S  C  K  I  I  I  E  E  L  I  A  L  F  G  L  K  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="11" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31172" stop="30570"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TAIETTLWSIEWGIAELVNHPHIQKKLRDEIDTVLGPGVQVSEPDMPKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEEKHVEANGNDFRFLPFGVGRRSCPGIILALPILGITIGRLVQNFEMLPPPGQSKLDTSEKGGQFSLHILKHSTIVMKPRSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="47823" PGL_stop="48442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47823" e_stop="48442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="47823" e_stop="48442" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47823" stop="48442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTTCCTTTGGCACTTGGAAAATTATTTCAAGTGTATGCGGGTCCGTAGTGATGTCAACAAGATCAACACGGCTGTGTTGTATCTTTCAGAGTTGGCCATGCTGTGGTGGAAGCGTAAAGAGTTTGACATCGCAAAGAGGGCATGCGCGTTGAACACATGGGAGCAGTGCCGTGTGGAGTTCAAGAAGGCATTTCTCCCTAGCAACGTTGTCTATGAGGCAAAGCGCAAAATGCAGGAGTTGAGACAAAAGGGCAGCATACGCGCGTATGTGCGGGAGTTTACCACCCTTAAATTTCAGATTCCCGACCTCATGGACGACGACGCGTTGTTCTACTTCATGGATGGGCTGCAAAATTGGGCCAGAACGGAGTTGGAACGGCGGCAAGTCAGGACTATAGACGACGCCATCACGCAGGCTGAAGCCTTGACAGACTTCAAGCGAGAGAAGTCTCTTAGTGCCGAGGTGGACGACGAGGTAGGCAGTCATGATGATAGTGGGGATGACAGTGGCGAAGGCGAGGAGCAAACGCCACAACCCAAAAGGCGTGACACCTACGGGTCCAGCGGCAAGAAGCCCGGAGATCGTGGCAATACGGTAAGGGATTCCAAGGATGGTTG</gDNA_template>
            <first_frame> N  F  L  W  H  L  E  N  Y  F  K  C  M  R  V  R  S  D  V  N  K  I  N  T  A  V  L  Y  L  S  E  L  A  M  L  W  W  K  R  K  E  F  D  I  A  K  R  A  C  A  L  N  T  W  E  Q  C  R  V  E  F  K  K  A  F  L  P  S  N  V  V  Y  E  A  K  R  K  M  Q  E  L  R  Q  K  G  S  I  R  A  Y  V  R  E  F  T  T  L  K  F  Q  I  P  D  L  M  D  D  D  A  L  F  Y  F  M  D  G  L  Q  N  W  A  R  T  E  L  E  R  R  Q  V  R  T  I  D  D  A  I  T  Q  A  E  A  L  T  D  F  K  R  E  K  S  L  S  A  E  V  D  D  E  V  G  S  H  D  D  S  G  D  D  S  G  E  G  E  E  Q  T  P  Q  P  K  R  R  D  T  Y  G  S  S  G  K  K  P  G  D  R  G  N  T  V  R  D  S  K  D  G   </first_frame>
            <second_frame>  I  S  F  G  T  W  K  I  I  S  S  V  C  G  S  V  V  M  S  T  R  S  T  R  L  C  C  I  F  Q  S  W  P  C  C  G  G  S  V  K  S  L  T  S  Q  R  G  H  A  R  *  T  H  G  S  S  A  V  W  S  S  R  R  H  F  S  L  A  T  L  S  M  R  Q  S  A  K  C  R  S  *  D  K  R  A  A  Y  A  R  M  C  G  S  L  P  P  L  N  F  R  F  P  T  S  W  T  T  T  R  C  S  T  S  W  M  G  C  K  I  G  P  E  R  S  W  N  G  G  K  S  G  L  *  T  T  P  S  R  R  L  K  P  *  Q  T  S  S  E  R  S  L  L  V  P  R  W  T  T  R  *  A  V  M  M  I  V  G  M  T  V  A  K  A  R  S  K  R  H  N  P  K  G  V  T  P  T  G  P  A  A  R  S  P  E  I  V  A  I  R  *  G  I  P  R  M  V  </second_frame>
            <third_frame>   F  P  L  A  L  G  K  L  F  Q  V  Y  A  G  P  *  *  C  Q  Q  D  Q  H  G  C  V  V  S  F  R  V  G  H  A  V  V  E  A  *  R  V  *  H  R  K  E  G  M  R  V  E  H  M  G  A  V  P  C  G  V  Q  E  G  I  S  P  *  Q  R  C  L  *  G  K  A  Q  N  A  G  V  E  T  K  G  Q  H  T  R  V  C  A  G  V  Y  H  P  *  I  S  D  S  R  P  H  G  R  R  R  V  V  L  L  H  G  W  A  A  K  L  G  Q  N  G  V  G  T  A  A  S  Q  D  Y  R  R  R  H  H  A  G  *  S  L  D  R  L  Q  A  R  E  V  S  *  C  R  G  G  R  R  G  R  Q  S  *  *  *  W  G  *  Q  W  R  R  R  G  A  N  A  T  T  Q  K  A  *  H  L  R  V  Q  R  Q  E  A  R  R  S  W  Q  Y  G  K  G  F  Q  G  W  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47823" stop="48440"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLWHLENYFKCMRVRSDVNKINTAVLYLSELAMLWWKRKEFDIAKRACALNTWEQCRVEFKKAFLPSNVVYEAKRKMQELRQKGSIRAYVREFTTLKFQIPDLMDDDALFYFMDGLQNWARTELERRQVRTIDDAITQAEALTDFKREKSLSAEVDDEVGSHDDSGDDSGEGEEQTPQPKRRDTYGSSGKKPGDRGNTVRDSKDG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52296" PGL_stop="57569"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52296" e_stop="52869"/>
            <exon e_start="54479" e_stop="54709"/>
            <exon e_start="56225" e_stop="56383"/>
            <exon e_start="56474" e_stop="56626"/>
            <exon e_start="56844" e_stop="56927"/>
            <exon e_start="57138" e_stop="57569"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.860" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.700" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.762" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52296" e_stop="52869" e_length="574"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52870" i_stop="54478" i_length="1609"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54479" e_stop="54709" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.860" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54710" i_stop="56224" i_length="1515"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56225" e_stop="56383" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.700" acc_prob="0.999">
            <gDNA_intron_boundary i_start="56384" i_stop="56473" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56474" e_stop="56626" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.902" acc_prob="0.762">
            <gDNA_intron_boundary i_start="56627" i_stop="56843" i_length="217"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56844" e_stop="56927" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="56928" i_stop="57137" i_length="210"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="57138" e_stop="57569" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52296" stop="52664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52335" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52337" stop="52752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52338" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52348" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724861" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52352" stop="52869"/>
              <exon start="54479" stop="54516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52353" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52355" stop="52869"/>
              <exon start="54479" stop="54548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52356" stop="52869"/>
              <exon start="54479" stop="54643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390665" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52357" stop="52869"/>
              <exon start="54479" stop="54581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52358" stop="52869"/>
              <exon start="54479" stop="54515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326194" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52360" stop="52869"/>
              <exon start="54479" stop="54513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52360" stop="52789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52362" stop="52791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52363" stop="52832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52364" stop="52869"/>
              <exon start="54479" stop="54550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52366" stop="52869"/>
              <exon start="54479" stop="54665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52366" stop="52869"/>
              <exon start="54479" stop="54663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52366" stop="52797"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52367" stop="52869"/>
              <exon start="54479" stop="54559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52368" stop="52869"/>
              <exon start="54479" stop="54560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52369" stop="52869"/>
              <exon start="54479" stop="54505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52369" stop="52869"/>
              <exon start="54479" stop="54504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52370" stop="52619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52375" stop="52869"/>
              <exon start="54479" stop="54516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52385" stop="52783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310270" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52445" stop="52869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52446" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52675" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56850"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E556432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52727" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52814" stop="52869"/>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56611"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231235" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54479" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238488" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54571" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54573" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54600" stop="54709"/>
              <exon start="56225" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56365" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56369" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56374" stop="56383"/>
              <exon start="56474" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56530" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573225" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56606" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56613" stop="56626"/>
              <exon start="56844" stop="56927"/>
              <exon start="57138" stop="57387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56855" stop="56927"/>
              <exon start="57138" stop="57474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57225" stop="57563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGGGTTTATCAAGCTTTCTTCTTTTGCACTCCATTCTCACTTTCTCCTTTGTGTGTATCAACTGCCGTAACTTTTTTCCACTTCCAACAATGGCATCAGCCATGATTCTCGATCCAAAACCCTCGCCGGAGCTACCTGCAACTCGACCTGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCGCAGGAAGAGGTAAAACGGATCCAATCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACTACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTATTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC : GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGATCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACGGCCGCTTTCATAAGGGTGGTTGGCTCAGAATTCGTTCAGAAGTACTTGGGTGAG : GGTCCGCGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAA : ATGGATGGATTTGACCAGACTGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGATCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG : GTCTGTACTGCTAAGATGAACTTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG : ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGATTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCAAATATTTTAGAGGTCGACCTTGTACACTACCTCTGCAGATTCTTTTTAATAAGTTTTTAATGGTACTGCTGGTTTGTCAAACATCAAATGGTTTGTACCATTCTAGGTTCCATTACTTGTTCGTTCAGAAAGTGCAGCATAAGCAGTCTTACTATCCATTTAAGCTGCTTAAGTATCTCATCGTGAGGGGTGTTTCTGTAGACTTTCGGTCATATTAGTGCCTCATTCTGCGGGATGGCTTATTTCCTCATATATTAGCTTTGATTTTCGACTTTCT</gDNA_template>
            <first_frame> V  G  F  I  K  L  S  S  F  A  L  H  S  H  F  L  L  C  V  Y  Q  L  P  *  L  F  S  T  S  N  N  G  I  S  H  D  S  R  S  K  T  L  A  G  A  T  C  N  S  T  *  L  I  V  T  R  R  S  F  R  K  R  R  R  R  P  L  R  S  P  E  I  S  T  T  A  A  G  V  H  R  D  P  R  G  I  R  E  G  R  T  E  E  S  P  P  *  T  F  T  G  A  G  R  G  K  T  D  P  I  G  A  V  S  N  W  P  V  H  G  D  D  *  P  E  *  R  H  S  W  F  N  Y  G  I  *  L  L  R  E  D  T  Q  H  D  *  S  G  A  T  *  A  F  G  F  C  G  F  T  S  S  L  E  C  S  S  *  C  I  A  S  *  G  *  L  E  Y  F  A  A  K  P  I  R  E  A  *  C  Y  L  Q   : R  Y  W  R  M  *  H  S  K  A  G  N  S  *  G  C  *  V  T  F  D  S  S  *  V  V  Q  A  D  W  Y  R  S  S  P  W  C  L  A  L  W  S  T  R  Y  W  E  N  Y  A  C  K  G  C  C  S  S  H  Y  G  R  F  H  K  G  G  W  L  R  I  R  S  E  V  L  G  *   : G  S  A  N  G  S  *  C  V  P  S  C  Q  R  K  C  S  C  H  Y  I  Y  *  *  G  R  C  N  C  H  C  E  V  *  C  S  N  W  S  *  *  G  G  P  A  Y  L  D  G  V  A  *  S   : N  G  W  I  *  P  D  C  E  C  E  S  Y  H  G  N  *  Q  S  *  Y  F  G  S  C  T  S  A  S  W  K  A  *  S  E  D  *  I  S  F  A  *  *  A  S  K  E  A  C  F  S   : G  L  Y  C  *  D  E  L  R  *  R  G  *  L  G  R  L  C  F  S  P  *  *  N  *  C  C  *   : D  C  S  Y  M  S  G  S  R  Y  A  C  S  A  K  E  S  I  C  H  T  P  Q  G  L  *  K  G  L  Q  D  Q  C  E  E  A  G  H  *  F  R  V  L  *  V  I  C  K  S  R  *  A  N  I  L  E  V  D  L  V  H  Y  L  C  R  F  F  L  I  S  F  *  W  Y  C  W  F  V  K  H  Q  M  V  C  T  I  L  G  S  I  T  C  S  F  R  K  C  S  I  S  S  L  T  I  H  L  S  C  L  S  I  S  S  *  G  V  F  L  *  T  F  G  H  I  S  A  S  F  C  G  M  A  Y  F  L  I  Y  *  L  *  F  S  T  F  </first_frame>
            <second_frame>  S  G  L  S  S  F  L  L  L  H  S  I  L  T  F  S  F  V  C  I  N  C  R  N  F  F  P  L  P  T  M  A  S  A  M  I  L  D  P  K  P  S  P  E  L  P  A  T  R  P  D  L  S  S  H  D  V  P  S  E  N  G  E  D  D  L  Y  A  R  L  K  S  L  Q  R  Q  L  E  F  I  E  I  Q  E  E  Y  V  K  D  E  L  K  N  L  R  R  E  H  L  R  A  Q  E  E  V  K  R  I  Q  S  V  P  L  V  I  G  Q  F  M  E  M  I  D  Q  N  N  A  I  V  G  S  T  T  G  S  N  Y  Y  V  R  I  L  S  T  I  N  R  E  L  L  K  P  S  A  S  V  A  L  H  R  H  S  N  A  L  V  D  V  L  P  P  E  A  D  S  S  I  S  L  L  S  Q  S  E  K  P  D  V  T  Y  N  :  D  I  G  G  C  D  I  Q  K  Q  E  I  R  E  A  V  E  L  P  L  T  H  H  E  L  Y  K  Q  I  G  I  D  P  P  R  G  V  L  L  Y  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  H  H  T  T  A  A  F  I  R  V  V  G  S  E  F  V  Q  K  Y  L  G  E  :  G  P  R  M  V  R  D  V  F  R  L  A  K  E  N  A  P  A  I  I  F  I  D  E  V  D  A  I  A  T  A  R  F  D  A  Q  T  G  A  D  R  E  V  Q  R  I  L  M  E  L  L  N  Q  :  M  D  G  F  D  Q  T  V  N  V  K  V  I  M  A  T  N  R  A  D  T  L  D  P  A  L  L  R  P  G  R  L  D  R  K  I  E  F  P  L  P  D  R  R  Q  K  R  L  V  F  Q  :  V  C  T  A  K  M  N  L  G  D  E  V  D  L  E  D  Y  V  S  R  P  D  K  I  S  A  A  E  :  I  A  A  I  C  Q  E  A  G  M  H  A  V  R  K  N  R  Y  V  I  L  P  K  D  F  E  K  G  Y  R  T  N  V  K  K  P  D  T  D  F  E  F  Y  K  *  S  V  K  V  D  E  Q  I  F  *  R  S  T  L  Y  T  T  S  A  D  S  F  *  *  V  F  N  G  T  A  G  L  S  N  I  K  W  F  V  P  F  *  V  P  L  L  V  R  S  E  S  A  A  *  A  V  L  L  S  I  *  A  A  *  V  S  H  R  E  G  C  F  C  R  L  S  V  I  L  V  P  H  S  A  G  W  L  I  S  S  Y  I  S  F  D  F  R  L  S </second_frame>
            <third_frame>   R  V  Y  Q  A  F  F  F  C  T  P  F  S  L  S  P  L  C  V  S  T  A  V  T  F  F  H  F  Q  Q  W  H  Q  P  *  F  S  I  Q  N  P  R  R  S  Y  L  Q  L  D  L  T  Y  R  H  T  T  F  L  P  K  T  A  K  T  T  S  T  L  A  *  N  L  Y  N  G  S  W  S  S  S  R  S  K  R  N  T  *  R  T  N  *  R  I  S  A  V  N  I  Y  G  R  R  K  R  *  N  G  S  N  R  C  R  *  *  L  A  S  S  W  R  *  L  T  R  I  T  P  *  L  V  Q  L  R  D  L  I  T  T  *  G  Y  S  A  R  L  I  G  S  Y  L  S  L  R  L  L  W  L  Y  I  V  T  R  M  L  *  L  M  Y  C  L  L  R  L  T  R  V  F  R  C  *  A  N  Q  R  S  L  M  L  P  T  T :   I  L  E  D  V  T  F  K  S  R  K  F  V  R  L  L  S  Y  L  *  L  I  M  S  C  T  S  R  L  V  *  I  L  P  V  V  S  C  F  M  V  H  Q  V  L  G  K  L  C  L  Q  R  L  L  L  I  T  L  R  P  L  S  *  G  W  L  A  Q  N  S  F  R  S  T  W  V  R :   V  R  E  W  F  V  M  C  S  V  L  P  K  K  M  L  L  P  L  Y  L  L  M  R  *  M  Q  L  P  L  R  G  L  M  L  K  L  E  L  I  G  R  S  S  V  S  *  W  S  C  L  I  K :   W  M  D  L  T  R  L  *  M  *  K  L  S  W  Q  L  T  E  L  I  L  W  I  L  H  F  C  V  L  E  G  L  I  G  R  L  N  F  L  C  L  I  G  V  K  R  G  L  F  F  R :   S  V  L  L  R  *  T  *  V  T  R  L  T  W  K  I  M  F  L  A  L  I  K  L  V  L  L  R :   L  Q  L  Y  V  R  K  Q  V  C  M  Q  C  E  R  I  D  M  S  Y  S  P  R  T  L  K  R  V  T  G  P  M  *  R  S  R  T  L  I  S  S  S  I  S  D  L  *  K  *  M  S  K  Y  F  R  G  R  P  C  T  L  P  L  Q  I  L  F  N  K  F  L  M  V  L  L  V  C  Q  T  S  N  G  L  Y  H  S  R  F  H  Y  L  F  V  Q  K  V  Q  H  K  Q  S  Y  Y  P  F  K  L  L  K  Y  L  I  V  R  G  V  S  V  D  F  R  S  Y  *  C  L  I  L  R  D  G  L  F  P  H  I  L  A  L  I  F  D  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52297" stop="52869"/>
                    <exon start="54479" stop="54709"/>
                    <exon start="56225" stop="56383"/>
                    <exon start="56474" stop="56626"/>
                    <exon start="56844" stop="56927"/>
                    <exon start="57138" stop="57272"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGLSSFLLLHSILTFSFVCINCRNFFPLPTMASAMILDPKPSPELPATRPDLSSHDVPSENGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57286" stop="57510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSKYFRGRPCTLPLQILFNKFLMVLLVCQTSNGLYHSRFHYLFVQKVQHKQSYYPFKLLKYLIVRGVSVDFRSY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="58109" PGL_stop="56953"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58109" e_stop="58070"/>
            <exon e_start="57373" e_stop="57184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.600"/>
          <exon-only e_score="0.942"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.600">
            <gDNA_exon_boundary e_start="58109" e_stop="58070" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58069" i_stop="57374" i_length="696"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="57373" e_stop="57184" e_length="190"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58109" stop="58070"/>
              <exon start="57373" stop="57184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594149" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTGTGTTCCCATTCTTGCTTGATTTCTTTTTTCAATT : TTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGAT</gDNA_template>
            <first_frame> L  L  C  S  H  S  C  L  I  S  F  F  N   : F  *  Q  T  S  S  T  I  K  N  L  L  K  R  I  C  R  G  S  V  Q  G  R  P  L  K  Y  L  L  I  Y  F  Y  R  S  L  I  E  L  E  I  S  V  R  L  L  H  I  G  P  V  T  L  F  K  V  L  G  E  Y  D  I  S   </first_frame>
            <second_frame>  C  C  V  P  I  L  A  *  F  L  F  S  I  :  F  D  K  P  A  V  P  L  K  T  Y  *  K  E  S  A  E  V  V  Y  K  V  D  L  *  N  I  C  S  S  T  F  T  D  H  L  *  N  S  K  S  V  S  G  F  F  T  L  V  L  *  P  F  S  K  S  L  G  S  M  T  Y  R  </second_frame>
            <third_frame>   V  V  F  P  F  L  L  D  F  F  F  Q  F :   L  T  N  Q  Q  Y  H  *  K  L  I  K  K  N  L  Q  R  *  C  T  R  S  T  S  K  I  F  A  H  L  L  L  Q  I  T  Y  R  T  R  N  Q  C  P  A  S  S  H  W  S  C  N  P  F  Q  S  P  W  G  V  *  H  I  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57574" e_stop="57137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="57574" e_stop="57137" e_length="438"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57574" stop="57137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACAGAAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATC</gDNA_template>
            <first_frame> E  T  E  S  R  K  S  K  L  I  Y  E  E  I  S  H  P  A  E  *  G  T  N  M  T  E  S  L  Q  K  H  P  S  R  *  D  T  *  A  A  *  M  D  S  K  T  A  Y  A  A  L  S  E  R  T  S  N  G  T  *  N  G  T  N  H  L  M  F  D  K  P  A  V  P  L  K  T  Y  *  K  E  S  A  E  V  V  Y  K  V  D  L  *  N  I  C  S  S  T  F  T  D  H  L  *  N  S  K  S  V  S  G  F  F  T  L  V  L  *  P  F  S  K  S  L  G  S  M  T  Y  R  F  F  R  T  A  C  I  P  A  S  *  H  I  A  A  I </first_frame>
            <second_frame>  K  Q  K  V  E  N  Q  S  *  Y  M  R  K  *  A  I  P  Q  N  E  A  L  I  *  P  K  V  Y  R  N  T  P  H  D  E  I  L  K  Q  L  K  W  I  V  R  L  L  M  L  H  F  L  N  E  Q  V  M  E  P  R  M  V  Q  T  I  *  C  L  T  N  Q  Q  Y  H  *  K  L  I  K  K  N  L  Q  R  *  C  T  R  S  T  S  K  I  F  A  H  L  L  L  Q  I  T  Y  R  T  R  N  Q  C  P  A  S  S  H  W  S  C  N  P  F  Q  S  P  W  G  V  *  H  I  D  S  F  A  L  H  A  Y  L  L  P  D  I  *  L  Q   </second_frame>
            <third_frame>   N  R  K  S  K  I  K  A  N  I  *  G  N  K  P  S  R  R  M  R  H  *  Y  D  R  K  S  T  E  T  P  L  T  M  R  Y  L  S  S  L  N  G  *  *  D  C  L  C  C  T  F  *  T  N  K  *  W  N  L  E  W  Y  K  P  F  D  V  *  Q  T  S  S  T  I  K  N  L  L  K  R  I  C  R  G  S  V  Q  G  R  P  L  K  Y  L  L  I  Y  F  Y  R  S  L  I  E  L  E  I  S  V  R  L  L  H  I  G  P  V  T  L  F  K  V  L  G  E  Y  D  I  S  I  L  S  H  C  M  H  T  C  F  L  T  Y  S  C  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57368" stop="57138"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTSSTIKNLLKRICRGSVQGRPLKYLLIYFYRSLIELEISVRLLHIGPVTLFKVLGEYDISILSHCMHTCFLTYSCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58086" e_stop="58070"/>
            <exon e_start="57543" e_stop="56953"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.706"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.706">
            <gDNA_exon_boundary e_start="58086" e_stop="58070" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58069" i_stop="57544" i_length="526"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="57543" e_stop="56953" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58086" stop="58070"/>
              <exon start="57543" stop="56953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246077" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATTTCTTTTTTCAATT : ATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCTGTAACCCTTTTCAAAGTCCTTGGGGAGTATGACATATCGATTCTTTCGCACTGCATGCATACCTGCTTCCTGACATATAGCTGCAATCTGCAGATATTGCAACATGCATCACAGTCGTGTTGGTCAAATTGGCACTTCAATTATAAAGGTCGTTCACATTTTAAAAATAGAAGGATCAAAATAGATGGCAGCAAAATTAAGAACAACTTAGTCTTAACACTAGACGACAACATTTTGAATCAGTAGTGAATCATCCTGTTATCAGTCGAAAA</gDNA_template>
            <first_frame> D  F  F  F  Q  L :   *  G  N  K  P  S  R  R  M  R  H  *  Y  D  R  K  S  T  E  T  P  L  T  M  R  Y  L  S  S  L  N  G  *  *  D  C  L  C  C  T  F  *  T  N  K  *  W  N  L  E  W  Y  K  P  F  D  V  *  Q  T  S  S  T  I  K  N  L  L  K  R  I  C  R  G  S  V  Q  G  R  P  L  K  Y  L  L  I  Y  F  Y  R  S  L  I  E  L  E  I  S  V  R  L  L  H  I  G  P  V  T  L  F  K  V  L  G  E  Y  D  I  S  I  L  S  H  C  M  H  T  C  F  L  T  Y  S  C  N  L  Q  I  L  Q  H  A  S  Q  S  C  W  S  N  W  H  F  N  Y  K  G  R  S  H  F  K  N  R  R  I  K  I  D  G  S  K  I  K  N  N  L  V  L  T  L  D  D  N  I  L  N  Q  *  *  I  I  L  L  S  V  E   </first_frame>
            <second_frame>  I  S  F  F  N   : Y  E  E  I  S  H  P  A  E  *  G  T  N  M  T  E  S  L  Q  K  H  P  S  R  *  D  T  *  A  A  *  M  D  S  K  T  A  Y  A  A  L  S  E  R  T  S  N  G  T  *  N  G  T  N  H  L  M  F  D  K  P  A  V  P  L  K  T  Y  *  K  E  S  A  E  V  V  Y  K  V  D  L  *  N  I  C  S  S  T  F  T  D  H  L  *  N  S  K  S  V  S  G  F  F  T  L  V  L  *  P  F  S  K  S  L  G  S  M  T  Y  R  F  F  R  T  A  C  I  P  A  S  *  H  I  A  A  I  C  R  Y  C  N  M  H  H  S  R  V  G  Q  I  G  T  S  I  I  K  V  V  H  I  L  K  I  E  G  S  K  *  M  A  A  K  L  R  T  T  *  S  *  H  *  T  T  T  F  *  I  S  S  E  S  S  C  Y  Q  S  K  </second_frame>
            <third_frame>   F  L  F  S  I  :  M  R  K  *  A  I  P  Q  N  E  A  L  I  *  P  K  V  Y  R  N  T  P  H  D  E  I  L  K  Q  L  K  W  I  V  R  L  L  M  L  H  F  L  N  E  Q  V  M  E  P  R  M  V  Q  T  I  *  C  L  T  N  Q  Q  Y  H  *  K  L  I  K  K  N  L  Q  R  *  C  T  R  S  T  S  K  I  F  A  H  L  L  L  Q  I  T  Y  R  T  R  N  Q  C  P  A  S  S  H  W  S  C  N  P  F  Q  S  P  W  G  V  *  H  I  D  S  F  A  L  H  A  Y  L  L  P  D  I  *  L  Q  S  A  D  I  A  T  C  I  T  V  V  L  V  K  L  A  L  Q  L  *  R  S  F  T  F  *  K  *  K  D  Q  N  R  W  Q  Q  N  *  E  Q  L  S  L  N  T  R  R  Q  H  F  E  S  V  V  N  H  P  V  I  S  R  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57368" stop="56979"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTSSTIKNLLKRICRGSVQGRPLKYLLIYFYRSLIELEISVRLLHIGPVTLFKVLGEYDISILSHCMHTCFLTYSCNLQILQHASQSCWSNWHFNYKGRSHFKNRRIKIDGSKIKNNLVLTLDDNILNQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="58096" e_stop="58070"/>
            <exon e_start="57567" e_stop="57225"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.593"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.593">
            <gDNA_exon_boundary e_start="58096" e_stop="58070" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="58069" i_stop="57568" i_length="502"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="57567" e_stop="57225" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58096" stop="58070"/>
              <exon start="57567" stop="57225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351323" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCTTGCTTGATTTCTTTTTTCAATT : AAAGTCGAAAATCAAAGCTAATATATGAGGAAATAAGCCATCCCGCAGAATGAGGCACTAATATGACCGAAAGTCTACAGAAACACCCCTCACGATGAGATACTTAAGCAGCTTAAATGGATAGTAAGACTGCTTATGCTGCACTTTCTGAACGAACAAGTAATGGAACCTAGAATGGTACAAACCATTTGATGTTTGACAAACCAGCAGTACCATTAAAAACTTATTAAAAAGAATCTGCAGAGGTAGTGTACAAGGTCGACCTCTAAAATATTTGCTCATCTACTTTTACAGATCACTTATAGAACTCGAAATCAGTGTCCGGCTTCTTCACATTGGTCCT</gDNA_template>
            <first_frame> I  L  A  *  F  L  F  S  I  :  K  V  E  N  Q  S  *  Y  M  R  K  *  A  I  P  Q  N  E  A  L  I  *  P  K  V  Y  R  N  T  P  H  D  E  I  L  K  Q  L  K  W  I  V  R  L  L  M  L  H  F  L  N  E  Q  V  M  E  P  R  M  V  Q  T  I  *  C  L  T  N  Q  Q  Y  H  *  K  L  I  K  K  N  L  Q  R  *  C  T  R  S  T  S  K  I  F  A  H  L  L  L  Q  I  T  Y  R  T  R  N  Q  C  P  A  S  S  H  W  S  </first_frame>
            <second_frame>  F  L  L  D  F  F  F  Q  L :   K  S  K  I  K  A  N  I  *  G  N  K  P  S  R  R  M  R  H  *  Y  D  R  K  S  T  E  T  P  L  T  M  R  Y  L  S  S  L  N  G  *  *  D  C  L  C  C  T  F  *  T  N  K  *  W  N  L  E  W  Y  K  P  F  D  V  *  Q  T  S  S  T  I  K  N  L  L  K  R  I  C  R  G  S  V  Q  G  R  P  L  K  Y  L  L  I  Y  F  Y  R  S  L  I  E  L  E  I  S  V  R  L  L  H  I  G  P </second_frame>
            <third_frame>   S  C  L  I  S  F  F  N   : *  S  R  K  S  K  L  I  Y  E  E  I  S  H  P  A  E  *  G  T  N  M  T  E  S  L  Q  K  H  P  S  R  *  D  T  *  A  A  *  M  D  S  K  T  A  Y  A  A  L  S  E  R  T  S  N  G  T  *  N  G  T  N  H  L  M  F  D  K  P  A  V  P  L  K  T  Y  *  K  E  S  A  E  V  V  Y  K  V  D  L  *  N  I  C  S  S  T  F  T  D  H  L  *  N  S  K  S  V  S  G  F  F  T  L  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="58521" PGL_stop="59690"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58554" e_stop="59489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="58554" e_stop="59489" e_length="936"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58554" stop="59380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58567" stop="59403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720547" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58567" stop="59345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720074" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58580" stop="59336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58583" stop="59324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58587" stop="59013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58588" stop="59448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58594" stop="59489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58596" stop="59206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58601" stop="59435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58611" stop="59400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58611" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58617" stop="58988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58622" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58623" stop="59156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58631" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58632" stop="59421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58633" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58682" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58703" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58822" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58875" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58881" stop="59055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58924" stop="59437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58941" stop="59388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59019" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTATACAAAACCCCTCTTTGAAACCCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGTATTTGTTTTTTGTTATAGCAGTGTTATCTAATTATACATGC</gDNA_template>
            <first_frame> I  Y  T  K  P  L  F  E  T  L  F  S  S  P  S  F  S  S  L  V  L  *  P  W  I  L  T  I  *  G  L  S  N  R  R  Q  P  Y  R  R  N  P  T  F  N  L  *  R  P  T  K  S  Q  T  A  M  S  S  F  A  K  L  Q  S  H  S  I  G  T  L  H  *  R  K  Y  G  W  K  S  T  I  Q  S  S  S  R  *  R  L  T  S  E  *  I  S  R  S  V  G  L  S  *  K  P  E  P  I  L  P  T  S  A  T  Y  K  S  A  L  I  L  F  M  L  S  C  *  G  L  M  S  V  M  L  L  L  C  S  V  W  M  S  Y  M  W  I  P  S  R  S  R  M  *  R  H  *  E  V  S  I  C  L  G  L  L  V  D  C  L  G  K  E  E  R  R  N  L  L  *  R  M  R  R  R  L  G  *  *  L  Q  I  A  K  Y  I  Y  W  D  R  F  *  T  L  R  L  L  E  I  H  F  V  V  S  L  W  G  L  L  L  V  R  F  T  P  S  S  E  L  L  L  L  G  P  R  C  F  N  F  D  L  *  D  V  L  I  I  K  F  *  F  C  L  K  L  L  V  H  I  S  I  V  L  I  C  M  W  L  G  E  S  *  D  Y  T  K  F  C  F  F  S  I  D  E  Y  F  Q  Y  G  V  I  I  C  I  R  Y  E  P  C  *  Y  L  F  F  V  I  A  V  L  S  N  Y  T  C </first_frame>
            <second_frame>  S  I  Q  N  P  S  L  K  P  Y  S  P  A  P  P  S  L  P  W  F  C  S  H  G  Y  *  Q  S  E  G  *  A  T  A  G  N  L  T  G  E  T  Q  L  S  T  S  K  G  P  R  N  L  R  R  P  C  P  V  S  Q  S  Y  S  P  T  A  S  V  H  S  T  E  E  S  M  D  G  N  L  Q  S  N  L  R  A  D  E  D  *  H  P  N  E  S  Q  E  A  S  G  *  A  E  N  P  N  R  Y  S  R  H  Q  Q  P  T  K  V  R  *  F  C  S  C  F  H  A  R  V  *  C  L  *  C  C  C  F  A  P  F  G  *  V  I  C  G  F  L  R  D  Q  G  C  E  D  T  K  R  *  A  F  V  *  G  Y  W  *  I  V  W  E  R  R  K  D  E  I  C  Y  R  E  C  D  E  D  *  D  S  N  C  R  *  Q  N  T  Y  I  G  I  V  F  E  H  *  D  C  *  R  F  T  L  *  S  H  Y  G  V  S  C  W  *  G  L  L  Q  A  Q  S  C  Y  C  S  G  R  D  A  L  I  L  I  Y  R  M  F  *  L  S  N  F  D  F  V  *  N  Y  W  F  I  *  V  L  Y  *  Y  V  C  G  L  E  N  P  E  T  I  P  S  S  V  F  S  Q  *  M  N  T  F  S  M  G  *  L  Y  V  Y  D  T  N  R  V  S  I  C  F  L  L  *  Q  C  Y  L  I  I  H   </second_frame>
            <third_frame>   L  Y  K  T  P  L  *  N  P  I  L  Q  P  L  L  L  F  P  G  S  V  A  M  D  I  D  N  L  R  A  E  Q  P  P  A  T  L  P  A  K  P  N  F  Q  P  L  K  A  H  E  I  S  D  G  H  V  Q  F  R  K  V  T  V  P  Q  H  R  Y  T  P  L  K  K  V  W  M  E  I  Y  N  P  I  F  E  Q  M  K  I  D  I  R  M  N  L  K  K  R  R  V  E  L  K  T  R  T  D  T  P  D  I  S  N  L  Q  K  C  A  D  F  V  H  A  F  M  L  G  F  D  V  C  D  A  V  A  L  L  R  L  D  E  L  Y  V  D  S  F  E  I  K  D  V  K  T  L  R  G  E  H  L  S  R  A  I  G  R  L  S  G  K  G  G  K  T  K  F  A  I  E  N  A  T  K  T  R  I  V  I  A  D  S  K  I  H  I  L  G  S  F  L  N  I  K  I  A  R  D  S  L  C  S  L  I  M  G  S  P  A  G  K  V  Y  S  K  L  R  A  V  T  A  R  A  E  M  L  *  F  *  F  I  G  C  F  N  Y  Q  I  L  I  L  F  E  I  I  G  S  Y  K  Y  C  T  D  M  Y  V  A  W  R  I  L  R  L  Y  Q  V  L  F  F  L  N  R  *  I  L  S  V  W  G  D  Y  M  Y  T  I  R  T  V  L  V  F  V  F  C  Y  S  S  V  I  *  L  Y  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58577" stop="59260"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPILQPLLLFPGSVAMDIDNLRAEQPPATLPAKPNFQPLKAHEISDGHVQFRKVTVPQHRYTPLKKVWMEIYNPIFEQMKIDIRMNLKKRRVELKTRTDTPDISNLQKCADFVHAFMLGFDVCDAVALLRLDELYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFLNIKIARDSLCSLIMGSPAGKVYSKLRAVTARAEML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="58521" e_stop="58524"/>
            <exon e_start="58592" e_stop="59489"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.541" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58521" e_stop="58524" e_length="4"/>
          </exon>
          <intron i_serial="1" don_prob="0.541" acc_prob="0.781">
            <gDNA_intron_boundary i_start="58525" i_stop="58591" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="58592" e_stop="59489" e_length="898"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58521" stop="58524"/>
              <exon start="58592" stop="59353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58594" stop="59489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58596" stop="59206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58601" stop="59435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712307" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58611" stop="59400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58611" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58617" stop="58988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58622" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58623" stop="59156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58631" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58632" stop="59421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589182" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58633" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58682" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58703" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58822" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58875" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58881" stop="59055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58924" stop="59437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58941" stop="59388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59019" stop="59409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564721" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAT : CCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTATGTGGCTTGGAGAATCCTGAGACTATACCAAGTTCTGTTTTTTCTCAATAGATGAATACTTTCAGTATGGGGTGATTATATGTATACGATACGAACCGTGTTAGTATTTGTTTTTTGTTATAGCAGTGTTATCTAATTATACATGC</gDNA_template>
            <first_frame> P   : S  P  P  S  L  P  W  F  C  S  H  G  Y  *  Q  S  E  G  *  A  T  A  G  N  L  T  G  E  T  Q  L  S  T  S  K  G  P  R  N  L  R  R  P  C  P  V  S  Q  S  Y  S  P  T  A  S  V  H  S  T  E  E  S  M  D  G  N  L  Q  S  N  L  R  A  D  E  D  *  H  P  N  E  S  Q  E  A  S  G  *  A  E  N  P  N  R  Y  S  R  H  Q  Q  P  T  K  V  R  *  F  C  S  C  F  H  A  R  V  *  C  L  *  C  C  C  F  A  P  F  G  *  V  I  C  G  F  L  R  D  Q  G  C  E  D  T  K  R  *  A  F  V  *  G  Y  W  *  I  V  W  E  R  R  K  D  E  I  C  Y  R  E  C  D  E  D  *  D  S  N  C  R  *  Q  N  T  Y  I  G  I  V  F  E  H  *  D  C  *  R  F  T  L  *  S  H  Y  G  V  S  C  W  *  G  L  L  Q  A  Q  S  C  Y  C  S  G  R  D  A  L  I  L  I  Y  R  M  F  *  L  S  N  F  D  F  V  *  N  Y  W  F  I  *  V  L  Y  *  Y  V  C  G  L  E  N  P  E  T  I  P  S  S  V  F  S  Q  *  M  N  T  F  S  M  G  *  L  Y  V  Y  D  T  N  R  V  S  I  C  F  L  L  *  Q  C  Y  L  I  I  H   </first_frame>
            <second_frame>  H  :  P  L  L  L  F  P  G  S  V  A  M  D  I  D  N  L  R  A  E  Q  P  P  A  T  L  P  A  K  P  N  F  Q  P  L  K  A  H  E  I  S  D  G  H  V  Q  F  R  K  V  T  V  P  Q  H  R  Y  T  P  L  K  K  V  W  M  E  I  Y  N  P  I  F  E  Q  M  K  I  D  I  R  M  N  L  K  K  R  R  V  E  L  K  T  R  T  D  T  P  D  I  S  N  L  Q  K  C  A  D  F  V  H  A  F  M  L  G  F  D  V  C  D  A  V  A  L  L  R  L  D  E  L  Y  V  D  S  F  E  I  K  D  V  K  T  L  R  G  E  H  L  S  R  A  I  G  R  L  S  G  K  G  G  K  T  K  F  A  I  E  N  A  T  K  T  R  I  V  I  A  D  S  K  I  H  I  L  G  S  F  L  N  I  K  I  A  R  D  S  L  C  S  L  I  M  G  S  P  A  G  K  V  Y  S  K  L  R  A  V  T  A  R  A  E  M  L  *  F  *  F  I  G  C  F  N  Y  Q  I  L  I  L  F  E  I  I  G  S  Y  K  Y  C  T  D  M  Y  V  A  W  R  I  L  R  L  Y  Q  V  L  F  F  L  N  R  *  I  L  S  V  W  G  D  Y  M  Y  T  I  R  T  V  L  V  F  V  F  C  Y  S  S  V  I  *  L  Y  M  </second_frame>
            <third_frame>   I :   P  S  F  S  S  L  V  L  *  P  W  I  L  T  I  *  G  L  S  N  R  R  Q  P  Y  R  R  N  P  T  F  N  L  *  R  P  T  K  S  Q  T  A  M  S  S  F  A  K  L  Q  S  H  S  I  G  T  L  H  *  R  K  Y  G  W  K  S  T  I  Q  S  S  S  R  *  R  L  T  S  E  *  I  S  R  S  V  G  L  S  *  K  P  E  P  I  L  P  T  S  A  T  Y  K  S  A  L  I  L  F  M  L  S  C  *  G  L  M  S  V  M  L  L  L  C  S  V  W  M  S  Y  M  W  I  P  S  R  S  R  M  *  R  H  *  E  V  S  I  C  L  G  L  L  V  D  C  L  G  K  E  E  R  R  N  L  L  *  R  M  R  R  R  L  G  *  *  L  Q  I  A  K  Y  I  Y  W  D  R  F  *  T  L  R  L  L  E  I  H  F  V  V  S  L  W  G  L  L  L  V  R  F  T  P  S  S  E  L  L  L  L  G  P  R  C  F  N  F  D  L  *  D  V  L  I  I  K  F  *  F  C  L  K  L  L  V  H  I  S  I  V  L  I  C  M  W  L  G  E  S  *  D  Y  T  K  F  C  F  F  S  I  D  E  Y  F  Q  Y  G  V  I  I  C  I  R  Y  E  P  C  *  Y  L  F  F  V  I  A  V  L  S  N  Y  T  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58522" stop="58524"/>
                    <exon start="58592" stop="59260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPLLLFPGSVAMDIDNLRAEQPPATLPAKPNFQPLKAHEISDGHVQFRKVTVPQHRYTPLKKVWMEIYNPIFEQMKIDIRMNLKKRRVELKTRTDTPDISNLQKCADFVHAFMLGFDVCDAVALLRLDELYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFLNIKIARDSLCSLIMGSPAGKVYSKLRAVTARAEML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="58580" e_stop="59344"/>
            <exon e_start="59670" e_stop="59690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.160" e_score="0.999"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="58580" e_stop="59344" e_length="765"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.160">
            <gDNA_intron_boundary i_start="59345" i_stop="59669" i_length="325"/>
          </intron>
          <exon e_serial="2" e_score="0.429">
            <gDNA_exon_boundary e_start="59670" e_stop="59690" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58580" stop="59336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340088" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58583" stop="59324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58587" stop="59013"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58596" stop="59206"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58611" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58617" stop="58988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E454135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59191"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E449902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="59007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405440" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58620" stop="58951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58622" stop="59301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58623" stop="59156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324444" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58631" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58633" stop="59249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342659" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58703" stop="59235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58822" stop="59097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565098" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58869" stop="59344"/>
              <exon start="59670" stop="59690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58881" stop="59055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244038" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTATTCTCCAGCCCCTCCTTCTCTTCCCTGGTTCTGTAGCCATGGATATTGACAATCTGAGGGCTGAGCAACCGCCGGCAACCTTACCGGCGAAACCCAACTTTCAACCTCTAAAGGCCCACGAAATCTCAGACGGCCATGTCCAGTTTCGCAAAGTTACAGTCCCACAGCATCGGTACACTCCACTGAAGAAAGTATGGATGGAAATCTACAATCCAATCTTCGAGCAGATGAAGATTGACATCCGAATGAATCTCAAGAAGCGTCGGGTTGAGCTGAAAACCCGAACCGATACTCCCGACATCAGCAACCTACAAAAGTGCGCTGATTTTGTTCATGCTTTCATGCTAGGGTTTGATGTCTGTGATGCTGTTGCTTTGCTCCGTTTGGATGAGTTATATGTGGATTCCTTCGAGATCAAGGATGTGAAGACACTAAGAGGTGAGCATTTGTCTAGGGCTATTGGTAGATTGTCTGGGAAAGGAGGAAAGACGAAATTTGCTATAGAGAATGCGACGAAGACTAGGATAGTAATTGCAGATAGCAAAATACATATATTGGGATCGTTTTTGAACATTAAGATTGCTAGAGATTCACTTTGTAGTCTCATTATGGGGTCTCCTGCTGGTAAGGTTTACTCCAAGCTCAGAGCTGTTACTGCTCGGGCCGAGATGCTTTAATTTTGATTTATAGGATGTTTTAATTATCAAATTTTGATTTTGTTTGAAATTATTGGTTCATATAAGTATTGTACTGATATGTAT : TACACATAATATTCACACACT</gDNA_template>
            <first_frame> P  I  L  Q  P  L  L  L  F  P  G  S  V  A  M  D  I  D  N  L  R  A  E  Q  P  P  A  T  L  P  A  K  P  N  F  Q  P  L  K  A  H  E  I  S  D  G  H  V  Q  F  R  K  V  T  V  P  Q  H  R  Y  T  P  L  K  K  V  W  M  E  I  Y  N  P  I  F  E  Q  M  K  I  D  I  R  M  N  L  K  K  R  R  V  E  L  K  T  R  T  D  T  P  D  I  S  N  L  Q  K  C  A  D  F  V  H  A  F  M  L  G  F  D  V  C  D  A  V  A  L  L  R  L  D  E  L  Y  V  D  S  F  E  I  K  D  V  K  T  L  R  G  E  H  L  S  R  A  I  G  R  L  S  G  K  G  G  K  T  K  F  A  I  E  N  A  T  K  T  R  I  V  I  A  D  S  K  I  H  I  L  G  S  F  L  N  I  K  I  A  R  D  S  L  C  S  L  I  M  G  S  P  A  G  K  V  Y  S  K  L  R  A  V  T  A  R  A  E  M  L  *  F  *  F  I  G  C  F  N  Y  Q  I  L  I  L  F  E  I  I  G  S  Y  K  Y  C  T  D  M  Y  :  Y  T  *  Y  S  H  T </first_frame>
            <second_frame>  L  F  S  S  P  S  F  S  S  L  V  L  *  P  W  I  L  T  I  *  G  L  S  N  R  R  Q  P  Y  R  R  N  P  T  F  N  L  *  R  P  T  K  S  Q  T  A  M  S  S  F  A  K  L  Q  S  H  S  I  G  T  L  H  *  R  K  Y  G  W  K  S  T  I  Q  S  S  S  R  *  R  L  T  S  E  *  I  S  R  S  V  G  L  S  *  K  P  E  P  I  L  P  T  S  A  T  Y  K  S  A  L  I  L  F  M  L  S  C  *  G  L  M  S  V  M  L  L  L  C  S  V  W  M  S  Y  M  W  I  P  S  R  S  R  M  *  R  H  *  E  V  S  I  C  L  G  L  L  V  D  C  L  G  K  E  E  R  R  N  L  L  *  R  M  R  R  R  L  G  *  *  L  Q  I  A  K  Y  I  Y  W  D  R  F  *  T  L  R  L  L  E  I  H  F  V  V  S  L  W  G  L  L  L  V  R  F  T  P  S  S  E  L  L  L  L  G  P  R  C  F  N  F  D  L  *  D  V  L  I  I  K  F  *  F  C  L  K  L  L  V  H  I  S  I  V  L  I  C  I :   T  H  N  I  H  T   </second_frame>
            <third_frame>   Y  S  P  A  P  P  S  L  P  W  F  C  S  H  G  Y  *  Q  S  E  G  *  A  T  A  G  N  L  T  G  E  T  Q  L  S  T  S  K  G  P  R  N  L  R  R  P  C  P  V  S  Q  S  Y  S  P  T  A  S  V  H  S  T  E  E  S  M  D  G  N  L  Q  S  N  L  R  A  D  E  D  *  H  P  N  E  S  Q  E  A  S  G  *  A  E  N  P  N  R  Y  S  R  H  Q  Q  P  T  K  V  R  *  F  C  S  C  F  H  A  R  V  *  C  L  *  C  C  C  F  A  P  F  G  *  V  I  C  G  F  L  R  D  Q  G  C  E  D  T  K  R  *  A  F  V  *  G  Y  W  *  I  V  W  E  R  R  K  D  E  I  C  Y  R  E  C  D  E  D  *  D  S  N  C  R  *  Q  N  T  Y  I  G  I  V  F  E  H  *  D  C  *  R  F  T  L  *  S  H  Y  G  V  S  C  W  *  G  L  L  Q  A  Q  S  C  Y  C  S  G  R  D  A  L  I  L  I  Y  R  M  F  *  L  S  N  F  D  F  V  *  N  Y  W  F  I  *  V  L  Y  *  Y  V   : L  H  I  I  F  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58580" stop="59260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>678</number_coding_nucleotides>
                  <number_encoded_amino_acids>226</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PILQPLLLFPGSVAMDIDNLRAEQPPATLPAKPNFQPLKAHEISDGHVQFRKVTVPQHRYTPLKKVWMEIYNPIFEQMKIDIRMNLKKRRVELKTRTDTPDISNLQKCADFVHAFMLGFDVCDAVALLRLDELYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKFAIENATKTRIVIADSKIHILGSFLNIKIARDSLCSLIMGSPAGKVYSKLRAVTARAEML*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="59424" PGL_stop="58617"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59424" e_stop="58617"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="59424" e_stop="58617" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59424" stop="58721"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595116" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59405" stop="58617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59394" stop="58657"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602664" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAATCACCCCATACTGAAAGTATTCATCTATTGAGAAAAAACAGAACTTGGTATAGTCTCAGGATTCTCCAAGCCACATACATATCAGTACAATACTTATATGAACCAATAATTTCAAACAAAATCAAAATTTGATAATTAAAACATCCTATAAATCAAAATTAAAGCATCTCGGCCCGAGCAGTAACAGCTCTGAGCTTGGAGTAAACCTTACCAGCAGGAGACCCCATAATGAGACTACAAAGTGAATCTCTAGCAATCTTAATGTTCAAAAACGATCCCAATATATGTATTTTGCTATCTGCAATTACTATCCTAGTCTTCGTCGCATTCTCTATAGCAAATTTCGTCTTTCCTCCTTTCCCAGACAATCTACCAATAGCCCTAGACAAATGCTCACCTCTTAGTGTCTTCACATCCTTGATCTCGAAGGAATCCACATATAACTCATCCAAACGGAGCAAAGCAACAGCATCACAGACATCAAACCCTAGCATGAAAGCATGAACAAAATCAGCGCACTTTTGTAGGTTGCTGATGTCGGGAGTATCGGTTCGGGTTTTCAGCTCAACCCGACGCTTCTTGAGATTCATTCGGATGTCAATCTTCATCTGCTCGAAGATTGGATTGTAGATTTCCATCCATACTTTCTTCAGTGGAGTGTACCGATGCTGTGGGACTGTAACTTTGCGAAACTGGACATGGCCGTCTGAGATTTCGTGGGCCTTTAGAGGTTGAAAGTTGGGTTTCGCCGGTAAGGTTGCCGGCGGTTGCTCAGCCCTCAGATTGTCAATATCCATGGCTA</gDNA_template>
            <first_frame> I  *  S  P  H  T  E  S  I  H  L  L  R  K  N  R  T  W  Y  S  L  R  I  L  Q  A  T  Y  I  S  V  Q  Y  L  Y  E  P  I  I  S  N  K  I  K  I  *  *  L  K  H  P  I  N  Q  N  *  S  I  S  A  R  A  V  T  A  L  S  L  E  *  T  L  P  A  G  D  P  I  M  R  L  Q  S  E  S  L  A  I  L  M  F  K  N  D  P  N  I  C  I  L  L  S  A  I  T  I  L  V  F  V  A  F  S  I  A  N  F  V  F  P  P  F  P  D  N  L  P  I  A  L  D  K  C  S  P  L  S  V  F  T  S  L  I  S  K  E  S  T  Y  N  S  S  K  R  S  K  A  T  A  S  Q  T  S  N  P  S  M  K  A  *  T  K  S  A  H  F  C  R  L  L  M  S  G  V  S  V  R  V  F  S  S  T  R  R  F  L  R  F  I  R  M  S  I  F  I  C  S  K  I  G  L  *  I  S  I  H  T  F  F  S  G  V  Y  R  C  C  G  T  V  T  L  R  N  W  T  W  P  S  E  I  S  W  A  F  R  G  *  K  L  G  F  A  G  K  V  A  G  G  C  S  A  L  R  L  S  I  S  M  A  </first_frame>
            <second_frame>  Y  N  H  P  I  L  K  V  F  I  Y  *  E  K  T  E  L  G  I  V  S  G  F  S  K  P  H  T  Y  Q  Y  N  T  Y  M  N  Q  *  F  Q  T  K  S  K  F  D  N  *  N  I  L  *  I  K  I  K  A  S  R  P  E  Q  *  Q  L  *  A  W  S  K  P  Y  Q  Q  E  T  P  *  *  D  Y  K  V  N  L  *  Q  S  *  C  S  K  T  I  P  I  Y  V  F  C  Y  L  Q  L  L  S  *  S  S  S  H  S  L  *  Q  I  S  S  F  L  L  S  Q  T  I  Y  Q  *  P  *  T  N  A  H  L  L  V  S  S  H  P  *  S  R  R  N  P  H  I  T  H  P  N  G  A  K  Q  Q  H  H  R  H  Q  T  L  A  *  K  H  E  Q  N  Q  R  T  F  V  G  C  *  C  R  E  Y  R  F  G  F  S  A  Q  P  D  A  S  *  D  S  F  G  C  Q  S  S  S  A  R  R  L  D  C  R  F  P  S  I  L  S  S  V  E  C  T  D  A  V  G  L  *  L  C  E  T  G  H  G  R  L  R  F  R  G  P  L  E  V  E  S  W  V  S  P  V  R  L  P  A  V  A  Q  P  S  D  C  Q  Y  P  W  L </second_frame>
            <third_frame>   I  I  T  P  Y  *  K  Y  S  S  I  E  K  K  Q  N  L  V  *  S  Q  D  S  P  S  H  I  H  I  S  T  I  L  I  *  T  N  N  F  K  Q  N  Q  N  L  I  I  K  T  S  Y  K  S  K  L  K  H  L  G  P  S  S  N  S  S  E  L  G  V  N  L  T  S  R  R  P  H  N  E  T  T  K  *  I  S  S  N  L  N  V  Q  K  R  S  Q  Y  M  Y  F  A  I  C  N  Y  Y  P  S  L  R  R  I  L  Y  S  K  F  R  L  S  S  F  P  R  Q  S  T  N  S  P  R  Q  M  L  T  S  *  C  L  H  I  L  D  L  E  G  I  H  I  *  L  I  Q  T  E  Q  S  N  S  I  T  D  I  K  P  *  H  E  S  M  N  K  I  S  A  L  L  *  V  A  D  V  G  S  I  G  S  G  F  Q  L  N  P  T  L  L  E  I  H  S  D  V  N  L  H  L  L  E  D  W  I  V  D  F  H  P  Y  F  L  Q  W  S  V  P  M  L  W  D  C  N  F  A  K  L  D  M  A  V  *  D  F  V  G  L  *  R  L  K  V  G  F  R  R  *  G  C  R  R  L  L  S  P  Q  I  V  N  I  H  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59214" stop="58915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLPAGDPIMRLQSESLAILMFKNDPNICILLSAITILVFVAFSIANFVFPPFPDNLPIALDKCSPLSVFTSLISKESTYNSSKRSKATASQTSNPSMKA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="63084" PGL_stop="65439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63084" e_stop="63312"/>
            <exon e_start="65113" e_stop="65439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.845" acc_prob="0.984" e_score="0.904"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="63084" e_stop="63312" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="0.845" acc_prob="0.984">
            <gDNA_intron_boundary i_start="63313" i_stop="65112" i_length="1800"/>
          </intron>
          <exon e_serial="2" e_score="0.957">
            <gDNA_exon_boundary e_start="65113" e_stop="65439" e_length="327"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63084" stop="63312"/>
              <exon start="65113" stop="65439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470992" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTCTTCACTTTGTACTTTGCACTAAACACTCCTTCTTCTTCTCCATTAACACAGATCCAAATCTCTTACTACTTCAGCTCAAGCTAAACGGGTCGGGTCTTGTTCAGCGCAAAATGTGGTTACTGCAACTCGATGAATTTGATTTGATGTTCATCTTTACTGTTAATTTCATCTCAGAACCTCACTATTACTCCTAATACTTGAAGTGCTTTCTCGATTTTATAG : GACGACCACAATACTGGCAGCATAGTGGCTTTCAATCCATTGAAGGTATCCTCATGAGAATGTACTGCACCAATCAACTGCTACATTCTCTTTTTGTTGTAGCAACTCTTCTTTCGCTGTGCCGCGGTGATCTAAACTTAGACAGACAAGCCCTTCTTGACTTTGCTGCAGCAGTCCCACATGGCTGGAAGATCAACTGGGATCCCGCCACTCCTATCTGCTCATCTTGGGTAGGCGTTACTTGTAGTAATGATGAAGCCCATGTGGCGGAAGTACGACTTCCAGGAGTTGGACTCATTGGTTCACTTCCAAAAAATACTTTTGAGA</gDNA_template>
            <first_frame> L  T  L  H  F  V  L  C  T  K  H  S  F  F  F  S  I  N  T  D  P  N  L  L  L  L  Q  L  K  L  N  G  S  G  L  V  Q  R  K  M  W  L  L  Q  L  D  E  F  D  L  M  F  I  F  T  V  N  F  I  S  E  P  H  Y  Y  S  *  Y  L  K  C  F  L  D  F  I   : G  R  P  Q  Y  W  Q  H  S  G  F  Q  S  I  E  G  I  L  M  R  M  Y  C  T  N  Q  L  L  H  S  L  F  V  V  A  T  L  L  S  L  C  R  G  D  L  N  L  D  R  Q  A  L  L  D  F  A  A  A  V  P  H  G  W  K  I  N  W  D  P  A  T  P  I  C  S  S  W  V  G  V  T  C  S  N  D  E  A  H  V  A  E  V  R  L  P  G  V  G  L  I  G  S  L  P  K  N  T  F  E  </first_frame>
            <second_frame>  S  L  F  T  L  Y  F  A  L  N  T  P  S  S  S  P  L  T  Q  I  Q  I  S  Y  Y  F  S  S  S  *  T  G  R  V  L  F  S  A  K  C  G  Y  C  N  S  M  N  L  I  *  C  S  S  L  L  L  I  S  S  Q  N  L  T  I  T  P  N  T  *  S  A  F  S  I  L  *  :  D  D  H  N  T  G  S  I  V  A  F  N  P  L  K  V  S  S  *  E  C  T  A  P  I  N  C  Y  I  L  F  L  L  *  Q  L  F  F  R  C  A  A  V  I  *  T  *  T  D  K  P  F  L  T  L  L  Q  Q  S  H  M  A  G  R  S  T  G  I  P  P  L  L  S  A  H  L  G  *  A  L  L  V  V  M  M  K  P  M  W  R  K  Y  D  F  Q  E  L  D  S  L  V  H  F  Q  K  I  L  L  R </second_frame>
            <third_frame>   H  S  S  L  C  T  L  H  *  T  L  L  L  L  L  H  *  H  R  S  K  S  L  T  T  S  A  Q  A  K  R  V  G  S  C  S  A  Q  N  V  V  T  A  T  R  *  I  *  F  D  V  H  L  Y  C  *  F  H  L  R  T  S  L  L  L  L  I  L  E  V  L  S  R  F  Y  R :   T  T  T  I  L  A  A  *  W  L  S  I  H  *  R  Y  P  H  E  N  V  L  H  Q  S  T  A  T  F  S  F  C  C  S  N  S  S  F  A  V  P  R  *  S  K  L  R  Q  T  S  P  S  *  L  C  C  S  S  P  T  W  L  E  D  Q  L  G  S  R  H  S  Y  L  L  I  L  G  R  R  Y  L  *  *  *  *  S  P  C  G  G  S  T  T  S  R  S  W  T  H  W  F  T  S  K  K  Y  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63285" stop="63312"/>
                    <exon start="65113" stop="65438"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLKCFLDFIGRPQYWQHSGFQSIEGILMRMYCTNQLLHSLFVVATLLSLCRGDLNLDRQALLDFAAAVPHGWKINWDPATPICSSWVGVTCSNDEAHVAEVRLPGVGLIGSLPKNTFE</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63084" stop="63284"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTLHFVLCTKHSFFFSINTDPNLLLLQLKLNGSGLVQRKMWLLQLDEFDLMFIFTVNFISEPHYYS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="67132" PGL_stop="67963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67132" e_stop="67963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="67132" e_stop="67963" e_length="832"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67132" stop="67771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67390" stop="67963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67394" stop="67963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67450" stop="67936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E607456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCCACATCCATTCAATGGGTGGTCCAAAATTTACTCATGGAAATATAAAGTCCTCAAACGTCCTACTCAAGCAAGATATGGAAGCTTGCATCTCAGATTTTGGTTTAGCCCCTATAATGAACTTCCCTGCAGCCCCATCCCGATATCCAGGGTACCGGGCTCCTGAGGTGATAGAAAGCCGAAAGCATAGTCATAAATCAGATGTCTACAGCTTCGGTGTGTTACTACTCGAGATGCTTACTGGTAAGCAGCCAATGCAATCACCGGGGCGTGATGACATGGTTGACCTTCCTAGGTGGGTCCAATCAGTTGTCAGGGAGGAATGGACATCAGAGGTTTTTGACGTCGATTTGATGAGATTTCAAAACATTGAAGAAGAGATGGTACAAATGCTGCAAATTGCTATGGCATGTGTTGTAAAGGTCCCAGACATGCGACCCAACATGGAGGAAGTTGTTAGAATGATTGAAGACGTCAGGCAATCTAACTCCGAAAACAGGCATTCTTCAGAAAGAGAATAGATCCTATGATTCAAATGTGCATATCCCTTGATTCCTTGGATTTCTGACTTACAATTTGCAAGTGCAGAGAAGTTCATTCGATTTCGATTACCCAGTGCAACAACATACATGTTTTCTTTCCCTAAATTTTCTGATTCAATCCTATTGACAAGTGTATCTAGTGAAAGTGTGGATTTGTTTTCCTTAGGAGGTATAGTAGACAAGTTAATCATCTTCCTTTTTCTTTTCGTTTAAGAACTCTAGTCATTTGTTGTAAGATTCAATCTGCACTGCACTTATTAACATCTCATTTATGCAACATGTCGAAGCA</gDNA_template>
            <first_frame> A  H  I  H  S  M  G  G  P  K  F  T  H  G  N  I  K  S  S  N  V  L  L  K  Q  D  M  E  A  C  I  S  D  F  G  L  A  P  I  M  N  F  P  A  A  P  S  R  Y  P  G  Y  R  A  P  E  V  I  E  S  R  K  H  S  H  K  S  D  V  Y  S  F  G  V  L  L  L  E  M  L  T  G  K  Q  P  M  Q  S  P  G  R  D  D  M  V  D  L  P  R  W  V  Q  S  V  V  R  E  E  W  T  S  E  V  F  D  V  D  L  M  R  F  Q  N  I  E  E  E  M  V  Q  M  L  Q  I  A  M  A  C  V  V  K  V  P  D  M  R  P  N  M  E  E  V  V  R  M  I  E  D  V  R  Q  S  N  S  E  N  R  H  S  S  E  R  E  *  I  L  *  F  K  C  A  Y  P  L  I  P  W  I  S  D  L  Q  F  A  S  A  E  K  F  I  R  F  R  L  P  S  A  T  T  Y  M  F  S  F  P  K  F  S  D  S  I  L  L  T  S  V  S  S  E  S  V  D  L  F  S  L  G  G  I  V  D  K  L  I  I  F  L  F  L  F  V  *  E  L  *  S  F  V  V  R  F  N  L  H  C  T  Y  *  H  L  I  Y  A  T  C  R  S  </first_frame>
            <second_frame>  P  T  S  I  Q  W  V  V  Q  N  L  L  M  E  I  *  S  P  Q  T  S  Y  S  S  K  I  W  K  L  A  S  Q  I  L  V  *  P  L  *  *  T  S  L  Q  P  H  P  D  I  Q  G  T  G  L  L  R  *  *  K  A  E  S  I  V  I  N  Q  M  S  T  A  S  V  C  Y  Y  S  R  C  L  L  V  S  S  Q  C  N  H  R  G  V  M  T  W  L  T  F  L  G  G  S  N  Q  L  S  G  R  N  G  H  Q  R  F  L  T  S  I  *  *  D  F  K  T  L  K  K  R  W  Y  K  C  C  K  L  L  W  H  V  L  *  R  S  Q  T  C  D  P  T  W  R  K  L  L  E  *  L  K  T  S  G  N  L  T  P  K  T  G  I  L  Q  K  E  N  R  S  Y  D  S  N  V  H  I  P  *  F  L  G  F  L  T  Y  N  L  Q  V  Q  R  S  S  F  D  F  D  Y  P  V  Q  Q  H  T  C  F  L  S  L  N  F  L  I  Q  S  Y  *  Q  V  Y  L  V  K  V  W  I  C  F  P  *  E  V  *  *  T  S  *  S  S  S  F  F  F  S  F  K  N  S  S  H  L  L  *  D  S  I  C  T  A  L  I  N  I  S  F  M  Q  H  V  E  A </second_frame>
            <third_frame>   P  H  P  F  N  G  W  S  K  I  Y  S  W  K  Y  K  V  L  K  R  P  T  Q  A  R  Y  G  S  L  H  L  R  F  W  F  S  P  Y  N  E  L  P  C  S  P  I  P  I  S  R  V  P  G  S  *  G  D  R  K  P  K  A  *  S  *  I  R  C  L  Q  L  R  C  V  T  T  R  D  A  Y  W  *  A  A  N  A  I  T  G  A  *  *  H  G  *  P  S  *  V  G  P  I  S  C  Q  G  G  M  D  I  R  G  F  *  R  R  F  D  E  I  S  K  H  *  R  R  D  G  T  N  A  A  N  C  Y  G  M  C  C  K  G  P  R  H  A  T  Q  H  G  G  S  C  *  N  D  *  R  R  Q  A  I  *  L  R  K  Q  A  F  F  R  K  R  I  D  P  M  I  Q  M  C  I  S  L  D  S  L  D  F  *  L  T  I  C  K  C  R  E  V  H  S  I  S  I  T  Q  C  N  N  I  H  V  F  F  P  *  I  F  *  F  N  P  I  D  K  C  I  *  *  K  C  G  F  V  F  L  R  R  Y  S  R  Q  V  N  H  L  P  F  S  F  R  L  R  T  L  V  I  C  C  K  I  Q  S  A  L  H  L  L  T  S  H  L  C  N  M  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67132" stop="67653"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHIHSMGGPKFTHGNIKSSNVLLKQDMEACISDFGLAPIMNFPAAPSRYPGYRAPEVIESRKHSHKSDVYSFGVLLLEMLTGKQPMQSPGRDDMVDLPRWVQSVVREEWTSEVFDVDLMRFQNIEEEMVQMLQIAMACVVKVPDMRPNMEEVVRMIEDVRQSNSENRHSSERE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67663" stop="67887"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKCAYPLIPWISDLQFASAEKFIRFRLPSATTYMFSFPKFSDSILLTSVSSESVDLFSLGGIVDKLIIFLFLFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="68507" PGL_stop="73005"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68507" e_stop="68586"/>
            <exon e_start="68701" e_stop="68780"/>
            <exon e_start="68993" e_stop="69093"/>
            <exon e_start="69981" e_stop="70108"/>
            <exon e_start="70981" e_stop="71085"/>
            <exon e_start="72524" e_stop="73005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.196" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.898" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68507" e_stop="68586" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.196" acc_prob="0.846">
            <gDNA_intron_boundary i_start="68587" i_stop="68700" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68701" e_stop="68780" e_length="80"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68993" e_stop="69093" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69981" e_stop="70108" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70981" e_stop="71085" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72524" e_stop="73005" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68507" stop="68586"/>
              <exon start="68701" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72609"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68507" stop="68586"/>
              <exon start="68701" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68508" stop="68586"/>
              <exon start="68701" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68523" stop="68586"/>
              <exon start="68701" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68534" stop="68586"/>
              <exon start="68701" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68707" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68708" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68716" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68720" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68721" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68752" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68774" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69057" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600314" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70028" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70087" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70984" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72559" stop="73005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGATTCTTTGCATTTATTTTGAGATTTATAAATGTTATCAATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA : GATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG : GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG : GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG : GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG : GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</gDNA_template>
            <first_frame> Q  I  L  C  I  Y  F  E  I  Y  K  C  Y  Q  Y  L  F  S  Y  K  M  E  *  I  F  *  K :   I  G  S  K  P  N  P  S  S  A  I  F  H  S  I  N  C  L  P  H  L  P  L  L  N  S   : G  L  G  L  E  G  I  R  T  E  L  W  R  R  S  A  Y  *  R  S  L  R  I  C  R  R  I  L  P  P  H  A  A  L  :  V  Q  W  L  R  I  C  S  I  G  K  Q  Q  S  W  G  L  Q  I  A  L  M  Q  E  V  Y  F  W  S  Q  S  I  S  P  L  I  I  L  S  S  L  Q  R :   W  H  L  E  L  R  F  S  I  L  T  S  I  A  M  E  V  Y  V  W  I  S  L  K  S  N  G  V  R  L  *  P  Y  L  R :   S  C  C  P  F  A  L  Y  *  Q  I  Q  T  Q  T  T  H  L  Y  Q  K  L  L  I  C  T  R  L  T  G  P  N  T  R  P  L  L  V  A  G  L  K  N  M  R  W  D  N  G  I  V  L  G  C  V  *  D  T  F  N  F  N  Y  F  I  L  L  S  L  L  D  A  I  S  S  L  C  F  G  *  K  N  K  M  L  V  R  K  S  V  *  V  D  S  D  H  V  K  V  V  K  T  E  I  F  Q  Y  V  N  I  Y  L  L  N  F  S  E  G  R  T  *  N  V  I  L  F  L  L  L  P  D  V  S  C  M  G  A  I  F  *  V  A  K  I  P  V  I  K  Q  Q  L  F  L  F  M  R  P  F  S  C  </first_frame>
            <second_frame>  R  F  F  A  F  I  L  R  F  I  N  V  I  N  I  Y  S  A  I  K  W  S  R  Y  F  K   : R  L  A  Q  N  L  I  Q  A  L  Q  F  S  I  Q  L  I  V  F  H  I  F  L  F  L  I  Q  :  D  L  D  *  K  V  Y  G  L  N  Y  G  V  E  A  H  I  E  G  A  *  G  F  A  E  G  S  S  H  L  M  Q  R  W :   S  S  G  *  G  Y  V  P  L  A  S  N  N  H  G  A  Y  R  *  P  L  C  R  R  C  I  F  G  L  N  P  F  P  P  *  L  S  F  Q  A  S  K   : G  G  I  *  N  *  G  F  P  S  *  H  Q  *  Q  W  K  Y  M  F  G  Y  P  *  R  A  M  E  S  G  F  D  H  I  *   : G  P  V  V  H  L  L  F  I  D  R  S  K  P  R  R  P  T  C  T  R  N  C  S  Y  V  Q  D  *  Q  G  Q  I  R  D  H  C  S  *  L  D  S  K  I  C  D  G  I  T  A  L  S  S  G  V  S  K  T  L  S  I  S  I  T  S  F  C  F  H  S  *  M  Q  Y  L  H  C  A  L  D  E  R  T  K  C  W  *  G  N  Q  F  K  *  T  P  I  M  S  K  L  S  R  P  R  S  F  N  M  *  I  S  I  C  *  I  L  V  R  G  E  P  E  M  *  F  Y  F  Y  S  F  L  T  F  L  V  W  V  L  S  F  E  W  R  K  F  Q  *  L  N  S  N  F  F  S  L  *  D  H  F  P  V </second_frame>
            <third_frame>   D  S  L  H  L  F  *  D  L  *  M  L  S  I  F  I  Q  L  *  N  G  V  D  I  L  K  :  D  W  L  K  T  *  S  K  L  C  N  F  P  F  N  *  L  S  S  T  S  S  S  S  *  F  R :   T  W  I  R  R  Y  T  D  *  I  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  T  D  S  P  Y  A  G  G  V  F  L  V  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  A  K  Y  E  T  T  A  R  S  W  T  Q  K  Y  A  M  G  *  R  H  C  P  R  V  C  L  R  H  F  Q  F  Q  L  L  H  F  A  F  T  P  R  C  N  I  F  I  V  L  W  M  K  E  Q  N  V  G  K  E  I  S  L  S  R  L  R  S  C  Q  S  C  Q  D  R  D  L  S  I  C  E  Y  L  F  V  E  F  *  *  G  E  N  L  K  C  N  F  I  F  T  P  S  *  R  F  L  Y  G  C  Y  L  L  S  G  E  N  S  S  D  *  T  A  T  F  S  L  Y  E  T  I  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69021" stop="69093"/>
                    <exon start="69981" stop="70108"/>
                    <exon start="70981" stop="71085"/>
                    <exon start="72524" stop="72667"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72668" stop="72871"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCPRVCLRHFQFQLLHFAFTPRCNIFIVLWMKEQNVGKEISLSRLRSCQSCQDRDLSICEYLFVEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68596" e_stop="68780"/>
            <exon e_start="68993" e_stop="69093"/>
            <exon e_start="69981" e_stop="70108"/>
            <exon e_start="70981" e_stop="71085"/>
            <exon e_start="72524" e_stop="73005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.987" e_score="0.968"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="68596" e_stop="68780" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68993" e_stop="69093" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69981" e_stop="70108" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70981" e_stop="71085" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72524" e_stop="73005" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68596" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68596" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E708850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68642" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68707" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68708" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68716" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68720" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68721" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68752" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68774" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69057" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600314" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70028" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70087" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70984" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72559" stop="73005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATATCTCATTCTTTTTCTTCTTTTTTTTTTTGTTGAAATGGACTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG : GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG : GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG : GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG : GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</gDNA_template>
            <first_frame> *  I  S  H  S  F  S  S  F  F  F  C  *  N  G  L  K  M  S  V  Y  K  C  *  Q  S  E  Y  C  F  L  F  L  T  *  D  W  L  K  T  *  S  K  L  C  N  F  P  F  N  *  L  S  S  T  S  S  S  S  *  F  R :   T  W  I  R  R  Y  T  D  *  I  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  T  D  S  P  Y  A  G  G  V  F  L  V  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  A  K  Y  E  T  T  A  R  S  W  T  Q  K  Y  A  M  G  *  R  H  C  P  R  V  C  L  R  H  F  Q  F  Q  L  L  H  F  A  F  T  P  R  C  N  I  F  I  V  L  W  M  K  E  Q  N  V  G  K  E  I  S  L  S  R  L  R  S  C  Q  S  C  Q  D  R  D  L  S  I  C  E  Y  L  F  V  E  F  *  *  G  E  N  L  K  C  N  F  I  F  T  P  S  *  R  F  L  Y  G  C  Y  L  L  S  G  E  N  S  S  D  *  T  A  T  F  S  L  Y  E  T  I  F  L   </first_frame>
            <second_frame>  K  Y  L  I  L  F  L  L  F  F  F  V  E  M  D  *  K  *  V  C  I  N  A  N  R  V  N  I  V  F  Y  F  L  H  R  I  G  S  K  P  N  P  S  S  A  I  F  H  S  I  N  C  L  P  H  L  P  L  L  N  S   : G  L  G  L  E  G  I  R  T  E  L  W  R  R  S  A  Y  *  R  S  L  R  I  C  R  R  I  L  P  P  H  A  A  L  :  V  Q  W  L  R  I  C  S  I  G  K  Q  Q  S  W  G  L  Q  I  A  L  M  Q  E  V  Y  F  W  S  Q  S  I  S  P  L  I  I  L  S  S  L  Q  R :   W  H  L  E  L  R  F  S  I  L  T  S  I  A  M  E  V  Y  V  W  I  S  L  K  S  N  G  V  R  L  *  P  Y  L  R :   S  C  C  P  F  A  L  Y  *  Q  I  Q  T  Q  T  T  H  L  Y  Q  K  L  L  I  C  T  R  L  T  G  P  N  T  R  P  L  L  V  A  G  L  K  N  M  R  W  D  N  G  I  V  L  G  C  V  *  D  T  F  N  F  N  Y  F  I  L  L  S  L  L  D  A  I  S  S  L  C  F  G  *  K  N  K  M  L  V  R  K  S  V  *  V  D  S  D  H  V  K  V  V  K  T  E  I  F  Q  Y  V  N  I  Y  L  L  N  F  S  E  G  R  T  *  N  V  I  L  F  L  L  L  P  D  V  S  C  M  G  A  I  F  *  V  A  K  I  P  V  I  K  Q  Q  L  F  L  F  M  R  P  F  S  C  </second_frame>
            <third_frame>   N  I  S  F  F  F  F  F  F  F  L  L  K  W  T  K  N  E  C  V  *  M  L  T  E  *  I  L  F  S  I  S  Y  I  G  L  A  Q  N  L  I  Q  A  L  Q  F  S  I  Q  L  I  V  F  H  I  F  L  F  L  I  Q  :  D  L  D  *  K  V  Y  G  L  N  Y  G  V  E  A  H  I  E  G  A  *  G  F  A  E  G  S  S  H  L  M  Q  R  W :   S  S  G  *  G  Y  V  P  L  A  S  N  N  H  G  A  Y  R  *  P  L  C  R  R  C  I  F  G  L  N  P  F  P  P  *  L  S  F  Q  A  S  K   : G  G  I  *  N  *  G  F  P  S  *  H  Q  *  Q  W  K  Y  M  F  G  Y  P  *  R  A  M  E  S  G  F  D  H  I  *   : G  P  V  V  H  L  L  F  I  D  R  S  K  P  R  R  P  T  C  T  R  N  C  S  Y  V  Q  D  *  Q  G  Q  I  R  D  H  C  S  *  L  D  S  K  I  C  D  G  I  T  A  L  S  S  G  V  S  K  T  L  S  I  S  I  T  S  F  C  F  H  S  *  M  Q  Y  L  H  C  A  L  D  E  R  T  K  C  W  *  G  N  Q  F  K  *  T  P  I  M  S  K  L  S  R  P  R  S  F  N  M  *  I  S  I  C  *  I  L  V  R  G  E  P  E  M  *  F  Y  F  Y  S  F  L  T  F  L  V  W  V  L  S  F  E  W  R  K  F  Q  *  L  N  S  N  F  F  S  L  *  D  H  F  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69021" stop="69093"/>
                    <exon start="69981" stop="70108"/>
                    <exon start="70981" stop="71085"/>
                    <exon start="72524" stop="72667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72668" stop="72871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCPRVCLRHFQFQLLHFAFTPRCNIFIVLWMKEQNVGKEISLSRLRSCQSCQDRDLSICEYLFVEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68547" e_stop="68586"/>
            <exon e_start="68699" e_stop="68780"/>
            <exon e_start="68993" e_stop="69093"/>
            <exon e_start="69981" e_stop="70108"/>
            <exon e_start="70981" e_stop="71085"/>
            <exon e_start="72524" e_stop="73005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.196" acc_prob="0.000" e_score="0.925"/>
          <exon-intron don_prob="0.898" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="68547" e_stop="68586" e_length="40"/>
          </exon>
          <intron i_serial="1" don_prob="0.196" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68587" i_stop="68698" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68699" e_stop="68780" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.898" acc_prob="0.987">
            <gDNA_intron_boundary i_start="68781" i_stop="68992" i_length="212"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68993" e_stop="69093" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69981" e_stop="70108" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70981" e_stop="71085" e_length="105"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="72524" e_stop="73005" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68547" stop="68586"/>
              <exon start="68699" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68707" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68708" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341663" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68709" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278911" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68710" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68716" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286298" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68720" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68721" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72562"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68725" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68752" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68774" stop="68780"/>
              <exon start="68993" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612327" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69057" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600314" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70028" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70087" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70984" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72559" stop="73005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATATTTATTCAGCTATAAAATGGAGTAGATATTTTAAAA : AGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG : GACTTGGATTAGAAGGTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG : GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG : GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG : GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</gDNA_template>
            <first_frame> N  I  Y  S  A  I  K  W  S  R  Y  F  K   : K  D  W  L  K  T  *  S  K  L  C  N  F  P  F  N  *  L  S  S  T  S  S  S  S  *  F  R :   T  W  I  R  R  Y  T  D  *  I  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  T  D  S  P  Y  A  G  G  V  F  L  V  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  A  K  Y  E  T  T  A  R  S  W  T  Q  K  Y  A  M  G  *  R  H  C  P  R  V  C  L  R  H  F  Q  F  Q  L  L  H  F  A  F  T  P  R  C  N  I  F  I  V  L  W  M  K  E  Q  N  V  G  K  E  I  S  L  S  R  L  R  S  C  Q  S  C  Q  D  R  D  L  S  I  C  E  Y  L  F  V  E  F  *  *  G  E  N  L  K  C  N  F  I  F  T  P  S  *  R  F  L  Y  G  C  Y  L  L  S  G  E  N  S  S  D  *  T  A  T  F  S  L  Y  E  T  I  F  L   </first_frame>
            <second_frame>  I  F  I  Q  L  *  N  G  V  D  I  L  K  :  R  I  G  S  K  P  N  P  S  S  A  I  F  H  S  I  N  C  L  P  H  L  P  L  L  N  S   : G  L  G  L  E  G  I  R  T  E  L  W  R  R  S  A  Y  *  R  S  L  R  I  C  R  R  I  L  P  P  H  A  A  L  :  V  Q  W  L  R  I  C  S  I  G  K  Q  Q  S  W  G  L  Q  I  A  L  M  Q  E  V  Y  F  W  S  Q  S  I  S  P  L  I  I  L  S  S  L  Q  R :   W  H  L  E  L  R  F  S  I  L  T  S  I  A  M  E  V  Y  V  W  I  S  L  K  S  N  G  V  R  L  *  P  Y  L  R :   S  C  C  P  F  A  L  Y  *  Q  I  Q  T  Q  T  T  H  L  Y  Q  K  L  L  I  C  T  R  L  T  G  P  N  T  R  P  L  L  V  A  G  L  K  N  M  R  W  D  N  G  I  V  L  G  C  V  *  D  T  F  N  F  N  Y  F  I  L  L  S  L  L  D  A  I  S  S  L  C  F  G  *  K  N  K  M  L  V  R  K  S  V  *  V  D  S  D  H  V  K  V  V  K  T  E  I  F  Q  Y  V  N  I  Y  L  L  N  F  S  E  G  R  T  *  N  V  I  L  F  L  L  L  P  D  V  S  C  M  G  A  I  F  *  V  A  K  I  P  V  I  K  Q  Q  L  F  L  F  M  R  P  F  S  C  </second_frame>
            <third_frame>   Y  L  F  S  Y  K  M  E  *  I  F  *  K :   G  L  A  Q  N  L  I  Q  A  L  Q  F  S  I  Q  L  I  V  F  H  I  F  L  F  L  I  Q  :  D  L  D  *  K  V  Y  G  L  N  Y  G  V  E  A  H  I  E  G  A  *  G  F  A  E  G  S  S  H  L  M  Q  R  W :   S  S  G  *  G  Y  V  P  L  A  S  N  N  H  G  A  Y  R  *  P  L  C  R  R  C  I  F  G  L  N  P  F  P  P  *  L  S  F  Q  A  S  K   : G  G  I  *  N  *  G  F  P  S  *  H  Q  *  Q  W  K  Y  M  F  G  Y  P  *  R  A  M  E  S  G  F  D  H  I  *   : G  P  V  V  H  L  L  F  I  D  R  S  K  P  R  R  P  T  C  T  R  N  C  S  Y  V  Q  D  *  Q  G  Q  I  R  D  H  C  S  *  L  D  S  K  I  C  D  G  I  T  A  L  S  S  G  V  S  K  T  L  S  I  S  I  T  S  F  C  F  H  S  *  M  Q  Y  L  H  C  A  L  D  E  R  T  K  C  W  *  G  N  Q  F  K  *  T  P  I  M  S  K  L  S  R  P  R  S  F  N  M  *  I  S  I  C  *  I  L  V  R  G  E  P  E  M  *  F  Y  F  Y  S  F  L  T  F  L  V  W  V  L  S  F  E  W  R  K  F  Q  *  L  N  S  N  F  F  S  L  *  D  H  F  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69021" stop="69093"/>
                    <exon start="69981" stop="70108"/>
                    <exon start="70981" stop="71085"/>
                    <exon start="72524" stop="72667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72668" stop="72871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCPRVCLRHFQFQLLHFAFTPRCNIFIVLWMKEQNVGKEISLSRLRSCQSCQDRDLSICEYLFVEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="68641" e_stop="68780"/>
            <exon e_start="69008" e_stop="69093"/>
            <exon e_start="69981" e_stop="70108"/>
            <exon e_start="70981" e_stop="71085"/>
            <exon e_start="72524" e_stop="73005"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.898" acc_prob="0.000" e_score="0.879"/>
          <exon-intron don_prob="0.981" acc_prob="0.997" e_score="0.977"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="0.992"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.879">
            <gDNA_exon_boundary e_start="68641" e_stop="68780" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.898" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68781" i_stop="69007" i_length="227"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="69008" e_stop="69093" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.997">
            <gDNA_intron_boundary i_start="69094" i_stop="69980" i_length="887"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="69981" e_stop="70108" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="70109" i_stop="70980" i_length="872"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="70981" e_stop="71085" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71086" i_stop="72523" i_length="1438"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72524" e_stop="73005" e_length="482"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68641" stop="68780"/>
              <exon start="69008" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72880"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68641" stop="68780"/>
              <exon start="69008" stop="69093"/>
              <exon start="69981" stop="70093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68713" stop="68780"/>
              <exon start="69008" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69057" stop="69093"/>
              <exon start="69981" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E600314" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431280" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70002" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70028" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72986"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70087" stop="70108"/>
              <exon start="70981" stop="71085"/>
              <exon start="72524" stop="72908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573266" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70984" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71000" stop="71085"/>
              <exon start="72524" stop="72996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72559" stop="73005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72577" stop="72970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAAAAATGAGTGTGTATAAATGCTAACAGAGTGAATATTGTTTTCTATTTCTTACATAGGATTGGCTCAAAACCTAATCCAAGCTCTGCAATTTTCCATTCAATTAATTGTCTTCCACATCTTCCTCTTCTTAATTCAG : GTATACGGACTGAATTATGGCGTCGAAGCGCATATTGAAGGAGCTTAAGGATTTGCAGAAGGATCCTCCCACCTCATGCAGCGCTG : GTCCAGTGGCTGAGGATATGTTCCATTGGCAAGCAACAATCATGGGGCCTACAGATAGCCCTTATGCAGGAGGTGTATTTTTGGTCTCAATCCATTTCCCCCCTGATTATCCTTTCAAGCCTCCAAAG : GTGGCATTTAGAACTAAGGTTTTCCATCCTAACATCAATAGCAATGGAAGTATATGTTTGGATATCCTTAAAGAGCAATGGAGTCCGGCTTTGACCATATCTAAG : GTCCTGTTGTCCATTTGCTCTTTATTGACAGATCCAAACCCAGACGACCCACTTGTACCAGAAATTGCTCATATGTACAAGACTGACAGGGCCAAATACGAGACCACTGCTCGTAGCTGGACTCAAAAATATGCGATGGGATAACGGCATTGTCCTCGGGTGTGTCTAAGACACTTTCAATTTCAATTACTTCATTTTGCTTTCACTCCTAGATGCAATATCTTCATTGTGCTTTGGATGAAAGAACAAAATGTTGGTAAGGAAATCAGTTTAAGTAGACTCCGATCATGTCAAAGTTGTCAAGACCGAGATCTTTCAATATGTGAATATCTATTTGTTGAATTTTAGTGAGGGGAGAACCTGAAATGTAATTTTATTTTTACTCCTTCCTGACGTTTCTTGTATGGGTGCTATCTTTTGAGTGGCGAAAATTCCAGTGATTAAACAGCAACTTTTTCTCTTTATGAGACCATTTTCCTGTG</gDNA_template>
            <first_frame> L  K  M  S  V  Y  K  C  *  Q  S  E  Y  C  F  L  F  L  T  *  D  W  L  K  T  *  S  K  L  C  N  F  P  F  N  *  L  S  S  T  S  S  S  S  *  F  R :   Y  T  D  *  I  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  A  E  D  M  F  H  W  Q  A  T  I  M  G  P  T  D  S  P  Y  A  G  G  V  F  L  V  S  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  R  A  K  Y  E  T  T  A  R  S  W  T  Q  K  Y  A  M  G  *  R  H  C  P  R  V  C  L  R  H  F  Q  F  Q  L  L  H  F  A  F  T  P  R  C  N  I  F  I  V  L  W  M  K  E  Q  N  V  G  K  E  I  S  L  S  R  L  R  S  C  Q  S  C  Q  D  R  D  L  S  I  C  E  Y  L  F  V  E  F  *  *  G  E  N  L  K  C  N  F  I  F  T  P  S  *  R  F  L  Y  G  C  Y  L  L  S  G  E  N  S  S  D  *  T  A  T  F  S  L  Y  E  T  I  F  L   </first_frame>
            <second_frame>  *  K  *  V  C  I  N  A  N  R  V  N  I  V  F  Y  F  L  H  R  I  G  S  K  P  N  P  S  S  A  I  F  H  S  I  N  C  L  P  H  L  P  L  L  N  S   : G  I  R  T  E  L  W  R  R  S  A  Y  *  R  S  L  R  I  C  R  R  I  L  P  P  H  A  A  L  :  V  Q  W  L  R  I  C  S  I  G  K  Q  Q  S  W  G  L  Q  I  A  L  M  Q  E  V  Y  F  W  S  Q  S  I  S  P  L  I  I  L  S  S  L  Q  R :   W  H  L  E  L  R  F  S  I  L  T  S  I  A  M  E  V  Y  V  W  I  S  L  K  S  N  G  V  R  L  *  P  Y  L  R :   S  C  C  P  F  A  L  Y  *  Q  I  Q  T  Q  T  T  H  L  Y  Q  K  L  L  I  C  T  R  L  T  G  P  N  T  R  P  L  L  V  A  G  L  K  N  M  R  W  D  N  G  I  V  L  G  C  V  *  D  T  F  N  F  N  Y  F  I  L  L  S  L  L  D  A  I  S  S  L  C  F  G  *  K  N  K  M  L  V  R  K  S  V  *  V  D  S  D  H  V  K  V  V  K  T  E  I  F  Q  Y  V  N  I  Y  L  L  N  F  S  E  G  R  T  *  N  V  I  L  F  L  L  L  P  D  V  S  C  M  G  A  I  F  *  V  A  K  I  P  V  I  K  Q  Q  L  F  L  F  M  R  P  F  S  C  </second_frame>
            <third_frame>   K  N  E  C  V  *  M  L  T  E  *  I  L  F  S  I  S  Y  I  G  L  A  Q  N  L  I  Q  A  L  Q  F  S  I  Q  L  I  V  F  H  I  F  L  F  L  I  Q  :  V  Y  G  L  N  Y  G  V  E  A  H  I  E  G  A  *  G  F  A  E  G  S  S  H  L  M  Q  R  W :   S  S  G  *  G  Y  V  P  L  A  S  N  N  H  G  A  Y  R  *  P  L  C  R  R  C  I  F  G  L  N  P  F  P  P  *  L  S  F  Q  A  S  K   : G  G  I  *  N  *  G  F  P  S  *  H  Q  *  Q  W  K  Y  M  F  G  Y  P  *  R  A  M  E  S  G  F  D  H  I  *   : G  P  V  V  H  L  L  F  I  D  R  S  K  P  R  R  P  T  C  T  R  N  C  S  Y  V  Q  D  *  Q  G  Q  I  R  D  H  C  S  *  L  D  S  K  I  C  D  G  I  T  A  L  S  S  G  V  S  K  T  L  S  I  S  I  T  S  F  C  F  H  S  *  M  Q  Y  L  H  C  A  L  D  E  R  T  K  C  W  *  G  N  Q  F  K  *  T  P  I  M  S  K  L  S  R  P  R  S  F  N  M  *  I  S  I  C  *  I  L  V  R  G  E  P  E  M  *  F  Y  F  Y  S  F  L  T  F  L  V  W  V  L  S  F  E  W  R  K  F  Q  *  L  N  S  N  F  F  S  L  *  D  H  F  P  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69021" stop="69093"/>
                    <exon start="69981" stop="70108"/>
                    <exon start="70981" stop="71085"/>
                    <exon start="72524" stop="72667"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72668" stop="72871"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHCPRVCLRHFQFQLLHFAFTPRCNIFIVLWMKEQNVGKEISLSRLRSCQSCQDRDLSICEYLFVEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="71517" e_stop="72090"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="71517" e_stop="72090" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71517" stop="72090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCAATCATAAGGAAGGATAGAGTAGAAAAGGAAAGAACAGTAACTAAACATTATCATGACTTGTTTAAACTAAAAACAGTAACTATATGACAACATACCCAGTATAATCAGACTTTACTTCTACCTCAGAGGTAGAGAGGTTGTTTTGACCTACGACGCAAGGAAAAGTAGTCCAGAAAAAAGTAACAGAAGTCAAAAAGATATTTATTAATAAACAAATATCTATGCCCTTCAAAACATGCTTACCTTAAATAACATATTTGTTCTGTCAGATGTCAAGCAGCACCTTAGCAAGTATGATTCCATTTTTAGAATAAAAGAAAGGAAAGTGAGGGGAAGTATCATGTTCATTTCTTTATTAAAGAAAGTCGAGTGTGATATCTTTTGACATTTAGGCTCCTATTATAAAAGTATTTACTATATTATTGTCTGATGTAATGACTAGTCCTTCTGACTTGCTTCTGCTAAATCTTTGGTAGAAATTAGGTGAACTACTTGTGGCAATTTTGTCTCTTTCTGTCTTCCCTTTTCCCTCTAGTTGATGTTGAAGCAGATGATTTATTTTCTAACTTTT</gDNA_template>
            <first_frame> P  I  I  R  K  D  R  V  E  K  E  R  T  V  T  K  H  Y  H  D  L  F  K  L  K  T  V  T  I  *  Q  H  T  Q  Y  N  Q  T  L  L  L  P  Q  R  *  R  G  C  F  D  L  R  R  K  E  K  *  S  R  K  K  *  Q  K  S  K  R  Y  L  L  I  N  K  Y  L  C  P  S  K  H  A  Y  L  K  *  H  I  C  S  V  R  C  Q  A  A  P  *  Q  V  *  F  H  F  *  N  K  R  K  E  S  E  G  K  Y  H  V  H  F  F  I  K  E  S  R  V  *  Y  L  L  T  F  R  L  L  L  *  K  Y  L  L  Y  Y  C  L  M  *  *  L  V  L  L  T  C  F  C  *  I  F  G  R  N  *  V  N  Y  L  W  Q  F  C  L  F  L  S  S  L  F  P  L  V  D  V  E  A  D  D  L  F  S  N  F  </first_frame>
            <second_frame>  Q  S  *  G  R  I  E  *  K  R  K  E  Q  *  L  N  I  I  M  T  C  L  N  *  K  Q  *  L  Y  D  N  I  P  S  I  I  R  L  Y  F  Y  L  R  G  R  E  V  V  L  T  Y  D  A  R  K  S  S  P  E  K  S  N  R  S  Q  K  D  I  Y  *  *  T  N  I  Y  A  L  Q  N  M  L  T  L  N  N  I  F  V  L  S  D  V  K  Q  H  L  S  K  Y  D  S  I  F  R  I  K  E  R  K  V  R  G  S  I  M  F  I  S  L  L  K  K  V  E  C  D  I  F  *  H  L  G  S  Y  Y  K  S  I  Y  Y  I  I  V  *  C  N  D  *  S  F  *  L  A  S  A  K  S  L  V  E  I  R  *  T  T  C  G  N  F  V  S  F  C  L  P  F  S  L  *  L  M  L  K  Q  M  I  Y  F  L  T  F </second_frame>
            <third_frame>   N  H  K  E  G  *  S  R  K  G  K  N  S  N  *  T  L  S  *  L  V  *  T  K  N  S  N  Y  M  T  T  Y  P  V  *  S  D  F  T  S  T  S  E  V  E  R  L  F  *  P  T  T  Q  G  K  V  V  Q  K  K  V  T  E  V  K  K  I  F  I  N  K  Q  I  S  M  P  F  K  T  C  L  P  *  I  T  Y  L  F  C  Q  M  S  S  S  T  L  A  S  M  I  P  F  L  E  *  K  K  G  K  *  G  E  V  S  C  S  F  L  Y  *  R  K  S  S  V  I  S  F  D  I  *  A  P  I  I  K  V  F  T  I  L  L  S  D  V  M  T  S  P  S  D  L  L  L  L  N  L  W  *  K  L  G  E  L  L  V  A  I  L  S  L  S  V  F  P  F  P  S  S  *  C  *  S  R  *  F  I  F  *  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="75092" PGL_stop="76668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75092" e_stop="76668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="75092" e_stop="76668" e_length="1577"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75092" stop="75605"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75161" stop="75454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75226" stop="75948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75242" stop="75644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75244" stop="75735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266325" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75248" stop="76654"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75284" stop="75946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75407" stop="75745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75408" stop="76080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75408" stop="75869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75781" stop="76524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75820" stop="76508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75820" stop="76483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75914" stop="76556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75931" stop="76525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75945" stop="76668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434456" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAATCGGATCCAAATTGGGGCCCCAACCTGTTTTGTCTGCGTGGTATATGTGGCCTTTCAGAGCTGTACATTATTGTCCCATGCACTATATATCTTGAGCGGAGTGTTAAACCCCTGCCTTCTCTGTTTATACTTCCTCTCTTTTCTTCCCTATTTTTGGCTTTATACCTCTAATTATATTGTTCTAATTATATGGTAGAAAGATCTACTTCCCGCCAAAAACAACAAAGAAAGTAATCTCTTTTTCTTTGTTCACTCATCAACTTGTTTCTCAAATCATTTGTATCACTGCAACTTTTTCCACACTTAAAAACTTTTTATACAATAATATTGGTCACTATTCACTCACTTCAACCAGTTCTTGATTGTTTTAGTACTCCTTTTTGAGCTTATGATGATTTTTTTTTGTGCTCTTTGAAAAAAATATCTTTTAAATCGAACTGTAACTTTAAGTTTTTGGTATACCATGACGGAAAATTCAGTTCCGGTGATTAAATTCACTCAACACATAGTAACTACAAACAAGCATGTTTTTTCTGAGCATAACGAAAAATCCAATTCAGAGTTACAAAGAGTTGTGAGGATTATACTTACAGATGCCGATGCTACAGATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTATGATTGAGGTGTGTTTTTGTGATTCTGAAAAAAATAATTTATTATTTTTACGTTGGAAATATAAAGTCAAAATTCTATTGAAAATATAAATTTTATTTGTAAAGAAAAAAA</gDNA_template>
            <first_frame> G  I  G  S  K  L  G  P  Q  P  V  L  S  A  W  Y  M  W  P  F  R  A  V  H  Y  C  P  M  H  Y  I  S  *  A  E  C  *  T  P  A  F  S  V  Y  T  S  S  L  F  F  P  I  F  G  F  I  P  L  I  I  L  F  *  L  Y  G  R  K  I  Y  F  P  P  K  T  T  K  K  V  I  S  F  S  L  F  T  H  Q  L  V  S  Q  I  I  C  I  T  A  T  F  S  T  L  K  N  F  L  Y  N  N  I  G  H  Y  S  L  T  S  T  S  S  *  L  F  *  Y  S  F  L  S  L  *  *  F  F  F  V  L  F  E  K  N  I  F  *  I  E  L  *  L  *  V  F  G  I  P  *  R  K  I  Q  F  R  *  L  N  S  L  N  T  *  *  L  Q  T  S  M  F  F  L  S  I  T  K  N  P  I  Q  S  Y  K  E  L  *  G  L  Y  L  Q  M  P  M  L  Q  I  L  P  M  M  K  A  G  I  L  Y  G  E  *  R  G  T  *  R  R  S  T  L  C  R  Q  P  N  R  S  A  T  E  N  E  D  R  C  L  R  I  L  T  S  L  V  G  K  S  L  E  A  F  V  K  D  R  G  V  V  G  L  Q  R  F  G  T  R  P  G  E  N  G  C  G  W  V  L  M  T  P  Q  K  K  Q  L  S  F  T  I  K  L  Q  L  S  S  K  V  L  T  P  L  P  I  F  R  Y  Q  Q  R  R  R  *  R  *  R  L  R  K  P  K  P  S  L  L  P  T  V  E  I  K  A  K  T  M  S  L  C  H  P  P  Q  F  S  V  T  M  I  L  R  R  L  T  I  *  G  S  A  K  W  M  L  L  V  S  T  L  I  H  F  S  G  C  R  I  L  L  *  R  R  N  T  T  A  M  N  S  A  N  L  T  L  T  I  L  P  L  K  L  D  S  V  R  G  A  I  S  S  I  F  A  N  G  F  T  G  *  L  T  S  D  V  A  F  L  A  G  I  Y  I  *  *  L  A  V  S  I  H  T  K  T  L  *  E  I  F  V  F  I  F  L  L  I  V  G  E  Y  C  N  M  K  N  F  V  W  *  N  *  I  N  *  R  *  R  *  G  E  *  R  G  M  C  V  F  Y  D  *  G  V  F  L  *  F  *  K  K  *  F  I  I  F  T  L  E  I  *  S  Q  N  S  I  E  N  I  N  F  I  C  K  E  K   </first_frame>
            <second_frame>  E  S  D  P  N  W  G  P  N  L  F  C  L  R  G  I  C  G  L  S  E  L  Y  I  I  V  P  C  T  I  Y  L  E  R  S  V  K  P  L  P  S  L  F  I  L  P  L  F  S  S  L  F  L  A  L  Y  L  *  L  Y  C  S  N  Y  M  V  E  R  S  T  S  R  Q  K  Q  Q  R  K  *  S  L  F  L  C  S  L  I  N  L  F  L  K  S  F  V  S  L  Q  L  F  P  H  L  K  T  F  Y  T  I  I  L  V  T  I  H  S  L  Q  P  V  L  D  C  F  S  T  P  F  *  A  Y  D  D  F  F  L  C  S  L  K  K  I  S  F  K  S  N  C  N  F  K  F  L  V  Y  H  D  G  K  F  S  S  G  D  *  I  H  S  T  H  S  N  Y  K  Q  A  C  F  F  *  A  *  R  K  I  Q  F  R  V  T  K  S  C  E  D  Y  T  Y  R  C  R  C  Y  R  F  F  R  *  *  R  P  E  Y  C  T  E  S  E  E  A  R  D  G  D  Q  P  Y  A  V  N  Q  I  D  R  R  Q  K  T  K  I  G  V  S  G  F  *  R  H  S  S  E  K  V  *  R  R  S  S  K  T  V  G  S  L  G  C  R  D  S  G  P  D  P  G  K  T  G  V  V  G  Y  L  *  H  P  R  R  S  S  C  R  L  R  *  S  C  S  *  A  Q  R  S  *  R  R  Y  Q  F  S  G  I  N  N  G  G  G  N  G  D  G  Y  G  N  R  N  R  V  C  C  R  R  W  R  *  K  R  K  R  C  R  F  V  T  H  L  S  S  L  *  Q  *  F  C  A  V  *  Q  S  R  V  L  R  S  G  C  F  W  F  R  R  *  F  T  F  P  A  A  G  F  C  Y  D  G  E  I  L  R  R  *  I  R  R  I  *  L  *  R  F  C  P  *  S  S  I  V  Y  E  G  L  F  R  P  F  L  Q  M  G  S  L  V  S  *  L  V  T  W  H  F  W  R  E  Y  I  Y  S  D  *  Q  S  L  F  I  R  R  L  C  E  R  F  L  F  L  F  F  C  *  L  W  V  N  I  V  I  *  K  I  L  Y  G  E  I  E  L  I  N  D  E  D  K  E  S  E  G  G  C  V  Y  F  M  I  E  V  C  F  C  D  S  E  K  N  N  L  L  F  L  R  W  K  Y  K  V  K  I  L  L  K  I  *  I  L  F  V  K  K  K  </second_frame>
            <third_frame>   N  R  I  Q  I  G  A  P  T  C  F  V  C  V  V  Y  V  A  F  Q  S  C  T  L  L  S  H  A  L  Y  I  L  S  G  V  L  N  P  C  L  L  C  L  Y  F  L  S  F  L  P  Y  F  W  L  Y  T  S  N  Y  I  V  L  I  I  W  *  K  D  L  L  P  A  K  N  N  K  E  S  N  L  F  F  F  V  H  S  S  T  C  F  S  N  H  L  Y  H  C  N  F  F  H  T  *  K  L  F  I  Q  *  Y  W  S  L  F  T  H  F  N  Q  F  L  I  V  L  V  L  L  F  E  L  M  M  I  F  F  C  A  L  *  K  K  Y  L  L  N  R  T  V  T  L  S  F  W  Y  T  M  T  E  N  S  V  P  V  I  K  F  T  Q  H  I  V  T  T  N  K  H  V  F  S  E  H  N  E  K  S  N  S  E  L  Q  R  V  V  R  I  I  L  T  D  A  D  A  T  D  S  S  D  D  E  G  R  N  T  V  R  R  V  K  R  H  V  T  E  I  N  L  M  P  S  T  K  S  I  G  D  R  K  R  R  S  V  S  P  D  S  D  V  T  R  R  K  K  F  R  G  V  R  Q  R  P  W  G  R  W  A  A  E  I  R  D  P  T  R  G  K  R  V  W  L  G  T  Y  D  T  P  E  E  A  A  V  V  Y  D  K  A  A  V  K  L  K  G  P  D  A  V  T  N  F  P  V  S  T  T  A  E  V  T  V  T  V  T  E  T  E  T  E  S  V  A  D  G  G  D  K  S  E  N  D  V  A  L  S  P  T  S  V  L  C  D  N  D  F  A  P  F  D  N  L  G  F  C  E  V  D  A  F  G  F  D  V  D  S  L  F  R  L  P  D  F  A  M  T  E  K  Y  Y  G  D  E  F  G  E  F  D  F  D  D  F  A  L  E  A  R  *  C  T  R  G  Y  F  V  H  F  C  K  W  V  H  W  L  V  D  *  *  R  G  I  F  G  G  N  I  Y  I  V  I  S  S  L  Y  S  Y  E  D  F  V  R  D  F  C  F  Y  F  S  V  N  C  G  *  I  L  *  Y  E  K  F  C  M  V  K  L  N  *  L  T  M  K  I  R  R  V  K  G  D  V  C  I  L  *  L  R  C  V  F  V  I  L  K  K  I  I  Y  Y  F  Y  V  G  N  I  K  S  K  F  Y  *  K  Y  K  F  Y  L  *  R  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75511" stop="76305"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKYLLNRTVTLSFWYTMTENSVPVIKFTQHIVTTNKHVFSEHNEKSNSELQRVVRIILTDADATDSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDNLGFCEVDAFGFDVDSLFRLPDFAMTEKYYGDEFGEFDFDDFALEAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75094" stop="75291"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRIQIGAPTCFVCVVYVAFQSCTLLSHALYILSGVLNPCLLCLYFLSFLPYFWLYTSNYIVLIIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="75295" e_stop="75325"/>
            <exon e_start="75704" e_stop="76668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="75295" e_stop="75325" e_length="31"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75326" i_stop="75703" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="75704" e_stop="76668" e_length="965"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75295" stop="75325"/>
              <exon start="75704" stop="76520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75781" stop="76524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75820" stop="76508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75820" stop="76483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75914" stop="76556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350284" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75931" stop="76525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75945" stop="76668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E434456" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTACTTCCCGCCAAAAACAACAAAGAAA : ATTCTTCCGATGATGAAGGCCGGAATACTGTACGGAGAGTGAAGAGGCACGTGACGGAGATCAACCTTATGCCGTCAACCAAATCGATCGGCGACAGAAAACGAAGATCGGTGTCTCCGGATTCTGACGTCACTCGTCGGAAAAAGTTTAGAGGCGTTCGTCAAAGACCGTGGGGTCGTTGGGCTGCAGAGATTCGGGACCCGACCCGGGGAAAACGGGTGTGGTTGGGTACTTATGACACCCCAGAAGAAGCAGCTGTCGTTTACGATAAAGCTGCAGTTAAGCTCAAAGGTCCTGACGCCGTTACCAATTTTCCGGTATCAACAACGGCGGAGGTAACGGTGACGGTTACGGAAACCGAAACCGAGTCTGTTGCCGACGGTGGAGATAAAAGCGAAAACGATGTCGCTTTGTCACCCACCTCAGTTCTCTGTGACAATGATTTTGCGCCGTTTGACAATCTAGGGTTCTGCGAAGTGGATGCTTTTGGTTTCGACGTTGATTCACTTTTCCGGCTGCCGGATTTTGCTATGACGGAGAAATACTACGGCGATGAATTCGGCGAATTTGACTTTGACGATTTTGCCCTTGAAGCTCGATAGTGTACGAGGGGCTATTTCGTCCATTTTTGCAAATGGGTTCACTGGTTAGTTGACTAGTGACGTGGCATTTTTGGCGGGAATATATATATAGTGATTAGCAGTCTCTATTCATACGAAGACTTTGTGAGAGATTTTTGTTTTTATTTTTCTGTTAATTGTGGGTGAATATTGTAATATGAAAAATTTTGTATGGTGAAATTGAATTAATTAACGATGAAGATAAGGAGAGTGAAGGGGGATGTGTGTATTTTATGATTGAGGTGTGTTTTTGTGATTCTGAAAAAAATAATTTATTATTTTTACGTTGGAAATATAAAGTCAAAATTCTATTGAAAATATAAATTTTATTTGTAAAGAAAAAAA</gDNA_template>
            <first_frame> D  L  L  P  A  K  N  N  K  E   : N  S  S  D  D  E  G  R  N  T  V  R  R  V  K  R  H  V  T  E  I  N  L  M  P  S  T  K  S  I  G  D  R  K  R  R  S  V  S  P  D  S  D  V  T  R  R  K  K  F  R  G  V  R  Q  R  P  W  G  R  W  A  A  E  I  R  D  P  T  R  G  K  R  V  W  L  G  T  Y  D  T  P  E  E  A  A  V  V  Y  D  K  A  A  V  K  L  K  G  P  D  A  V  T  N  F  P  V  S  T  T  A  E  V  T  V  T  V  T  E  T  E  T  E  S  V  A  D  G  G  D  K  S  E  N  D  V  A  L  S  P  T  S  V  L  C  D  N  D  F  A  P  F  D  N  L  G  F  C  E  V  D  A  F  G  F  D  V  D  S  L  F  R  L  P  D  F  A  M  T  E  K  Y  Y  G  D  E  F  G  E  F  D  F  D  D  F  A  L  E  A  R  *  C  T  R  G  Y  F  V  H  F  C  K  W  V  H  W  L  V  D  *  *  R  G  I  F  G  G  N  I  Y  I  V  I  S  S  L  Y  S  Y  E  D  F  V  R  D  F  C  F  Y  F  S  V  N  C  G  *  I  L  *  Y  E  K  F  C  M  V  K  L  N  *  L  T  M  K  I  R  R  V  K  G  D  V  C  I  L  *  L  R  C  V  F  V  I  L  K  K  I  I  Y  Y  F  Y  V  G  N  I  K  S  K  F  Y  *  K  Y  K  F  Y  L  *  R  K  K </first_frame>
            <second_frame>  I  Y  F  P  P  K  T  T  K  K  :  I  L  P  M  M  K  A  G  I  L  Y  G  E  *  R  G  T  *  R  R  S  T  L  C  R  Q  P  N  R  S  A  T  E  N  E  D  R  C  L  R  I  L  T  S  L  V  G  K  S  L  E  A  F  V  K  D  R  G  V  V  G  L  Q  R  F  G  T  R  P  G  E  N  G  C  G  W  V  L  M  T  P  Q  K  K  Q  L  S  F  T  I  K  L  Q  L  S  S  K  V  L  T  P  L  P  I  F  R  Y  Q  Q  R  R  R  *  R  *  R  L  R  K  P  K  P  S  L  L  P  T  V  E  I  K  A  K  T  M  S  L  C  H  P  P  Q  F  S  V  T  M  I  L  R  R  L  T  I  *  G  S  A  K  W  M  L  L  V  S  T  L  I  H  F  S  G  C  R  I  L  L  *  R  R  N  T  T  A  M  N  S  A  N  L  T  L  T  I  L  P  L  K  L  D  S  V  R  G  A  I  S  S  I  F  A  N  G  F  T  G  *  L  T  S  D  V  A  F  L  A  G  I  Y  I  *  *  L  A  V  S  I  H  T  K  T  L  *  E  I  F  V  F  I  F  L  L  I  V  G  E  Y  C  N  M  K  N  F  V  W  *  N  *  I  N  *  R  *  R  *  G  E  *  R  G  M  C  V  F  Y  D  *  G  V  F  L  *  F  *  K  K  *  F  I  I  F  T  L  E  I  *  S  Q  N  S  I  E  N  I  N  F  I  C  K  E  K   </second_frame>
            <third_frame>   S  T  S  R  Q  K  Q  Q  R  K :   F  F  R  *  *  R  P  E  Y  C  T  E  S  E  E  A  R  D  G  D  Q  P  Y  A  V  N  Q  I  D  R  R  Q  K  T  K  I  G  V  S  G  F  *  R  H  S  S  E  K  V  *  R  R  S  S  K  T  V  G  S  L  G  C  R  D  S  G  P  D  P  G  K  T  G  V  V  G  Y  L  *  H  P  R  R  S  S  C  R  L  R  *  S  C  S  *  A  Q  R  S  *  R  R  Y  Q  F  S  G  I  N  N  G  G  G  N  G  D  G  Y  G  N  R  N  R  V  C  C  R  R  W  R  *  K  R  K  R  C  R  F  V  T  H  L  S  S  L  *  Q  *  F  C  A  V  *  Q  S  R  V  L  R  S  G  C  F  W  F  R  R  *  F  T  F  P  A  A  G  F  C  Y  D  G  E  I  L  R  R  *  I  R  R  I  *  L  *  R  F  C  P  *  S  S  I  V  Y  E  G  L  F  R  P  F  L  Q  M  G  S  L  V  S  *  L  V  T  W  H  F  W  R  E  Y  I  Y  S  D  *  Q  S  L  F  I  R  R  L  C  E  R  F  L  F  L  F  F  C  *  L  W  V  N  I  V  I  *  K  I  L  Y  G  E  I  E  L  I  N  D  E  D  K  E  S  E  G  G  C  V  Y  F  M  I  E  V  C  F  C  D  S  E  K  N  N  L  L  F  L  R  W  K  Y  K  V  K  I  L  L  K  I  *  I  L  F  V  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75295" stop="75325"/>
                    <exon start="75704" stop="76305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>630</number_coding_nucleotides>
                  <number_encoded_amino_acids>210</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLLPAKNNKENSSDDEGRNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVLCDNDFAPFDNLGFCEVDAFGFDVDSLFRLPDFAMTEKYYGDEFGEFDFDDFALEAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="76523" PGL_stop="75863"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76523" e_stop="75863"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="76523" e_stop="75863" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76523" stop="75863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATCGTTAATTAATTCAATTTCACCATACAAAATTTTTCATATTACAATATTCACCCACAATTAACAGAAAAATAAAAACAAAAATCTCTCACAAAGTCTTCGTATGAATAGAGACTGCTAATCACTATATATATATTCCCGCCAAAAATGCCACGTCACTAGTCAACTAACCAGTGAACCCATTTGCAAAAATGGACGAAATAGCCCCTCGTACACTATCGAGCTTCAAGGGCAAAATCGTCAAAGTCAAATTCGCCGAATTCATCGCCGTAGTATTTCTCCGTCATAGCAAAATCCGGCAGCCGGAAAAGTGAATCAACGTCGAAACCAAAAGCATCCACTTCGCAGAACCCTAGATTGTCAAACGGCGCAAAATCATTGTCACAGAGAACTGAGGTGGGTGACAAAGCGACATCGTTTTCGCTTTTATCTCCACCGTCGGCAACAGACTCGGTTTCGGTTTCCGTAACCGTCACCGTTACCTCCGCCGTTGTTGATACCGGAAAATTGGTAACGGCGTCAGGACCTTTGAGCTTAACTGCAGCTTTATCGTAAACGACAGCTGCTTCTTCTGGGGTGTCATAAGTACCCAACCACACCCGTTTTCCCCGGGTCGGGTCCCGAATCTCTGCAGCCCAACGACCCCACGGTCTTTGAC</gDNA_template>
            <first_frame> F  I  V  N  *  F  N  F  T  I  Q  N  F  S  Y  Y  N  I  H  P  Q  L  T  E  K  *  K  Q  K  S  L  T  K  S  S  Y  E  *  R  L  L  I  T  I  Y  I  F  P  P  K  M  P  R  H  *  S  T  N  Q  *  T  H  L  Q  K  W  T  K  *  P  L  V  H  Y  R  A  S  R  A  K  S  S  K  S  N  S  P  N  S  S  P  *  Y  F  S  V  I  A  K  S  G  S  R  K  S  E  S  T  S  K  P  K  A  S  T  S  Q  N  P  R  L  S  N  G  A  K  S  L  S  Q  R  T  E  V  G  D  K  A  T  S  F  S  L  L  S  P  P  S  A  T  D  S  V  S  V  S  V  T  V  T  V  T  S  A  V  V  D  T  G  K  L  V  T  A  S  G  P  L  S  L  T  A  A  L  S  *  T  T  A  A  S  S  G  V  S  *  V  P  N  H  T  R  F  P  R  V  G  S  R  I  S  A  A  Q  R  P  H  G  L  *  </first_frame>
            <second_frame>  S  S  L  I  N  S  I  S  P  Y  K  I  F  H  I  T  I  F  T  H  N  *  Q  K  N  K  N  K  N  L  S  Q  S  L  R  M  N  R  D  C  *  S  L  Y  I  Y  S  R  Q  K  C  H  V  T  S  Q  L  T  S  E  P  I  C  K  N  G  R  N  S  P  S  Y  T  I  E  L  Q  G  Q  N  R  Q  S  Q  I  R  R  I  H  R  R  S  I  S  P  S  *  Q  N  P  A  A  G  K  V  N  Q  R  R  N  Q  K  H  P  L  R  R  T  L  D  C  Q  T  A  Q  N  H  C  H  R  E  L  R  W  V  T  K  R  H  R  F  R  F  Y  L  H  R  R  Q  Q  T  R  F  R  F  P  *  P  S  P  L  P  P  P  L  L  I  P  E  N  W  *  R  R  Q  D  L  *  A  *  L  Q  L  Y  R  K  R  Q  L  L  L  L  G  C  H  K  Y  P  T  T  P  V  F  P  G  S  G  P  E  S  L  Q  P  N  D  P  T  V  F  D </second_frame>
            <third_frame>   H  R  *  L  I  Q  F  H  H  T  K  F  F  I  L  Q  Y  S  P  T  I  N  R  K  I  K  T  K  I  S  H  K  V  F  V  *  I  E  T  A  N  H  Y  I  Y  I  P  A  K  N  A  T  S  L  V  N  *  P  V  N  P  F  A  K  M  D  E  I  A  P  R  T  L  S  S  F  K  G  K  I  V  K  V  K  F  A  E  F  I  A  V  V  F  L  R  H  S  K  I  R  Q  P  E  K  *  I  N  V  E  T  K  S  I  H  F  A  E  P  *  I  V  K  R  R  K  I  I  V  T  E  N  *  G  G  *  Q  S  D  I  V  F  A  F  I  S  T  V  G  N  R  L  G  F  G  F  R  N  R  H  R  Y  L  R  R  C  *  Y  R  K  I  G  N  G  V  R  T  F  E  L  N  C  S  F  I  V  N  D  S  C  F  F  W  G  V  I  S  T  Q  P  H  P  F  S  P  G  R  V  P  N  L  C  S  P  T  T  P  R  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76247" stop="75966"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFSVIAKSGSRKSESTSKPKASTSQNPRLSNGAKSLSQRTEVGDKATSFSLLSPPSATDSVSVSVTVTVTSAVVDTGKLVTASGPLSLTAALS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="84880" PGL_stop="88933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84880" e_stop="85119"/>
            <exon e_start="85253" e_stop="85341"/>
            <exon e_start="85972" e_stop="86135"/>
            <exon e_start="87176" e_stop="87295"/>
            <exon e_start="87629" e_stop="87745"/>
            <exon e_start="87940" e_stop="88083"/>
            <exon e_start="88531" e_stop="88933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.996"/>
          <exon-intron don_prob="0.989" acc_prob="0.927" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.946" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="84880" e_stop="85119" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="85120" i_stop="85252" i_length="133"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="85253" e_stop="85341" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.927">
            <gDNA_intron_boundary i_start="85342" i_stop="85971" i_length="630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85972" e_stop="86135" e_length="164"/>
          </exon>
          <intron i_serial="3" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86136" i_stop="87175" i_length="1040"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87176" e_stop="87295" e_length="120"/>
          </exon>
          <intron i_serial="4" don_prob="0.946" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87629" e_stop="87745" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87940" e_stop="88083" e_length="144"/>
          </exon>
          <intron i_serial="6" don_prob="0.924" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88084" i_stop="88530" i_length="447"/>
          </intron>
          <exon e_serial="7" e_score="0.998">
            <gDNA_exon_boundary e_start="88531" e_stop="88933" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84880" stop="85119"/>
              <exon start="85253" stop="85341"/>
              <exon start="85972" stop="86130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84891" stop="85119"/>
              <exon start="85253" stop="85341"/>
              <exon start="85972" stop="86135"/>
              <exon start="87176" stop="87279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84897" stop="85119"/>
              <exon start="85253" stop="85341"/>
              <exon start="85972" stop="86135"/>
              <exon start="87176" stop="87278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86015" stop="86135"/>
              <exon start="87176" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87190" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88083"/>
              <exon start="88531" stop="88840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87190" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87198" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88083"/>
              <exon start="88531" stop="88933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATTCAAAGCTTTCTCCTCCTCCTCCTTTCTTTATAAACCAAAAAAAAAAAAAAGTTTTCTCTTTTGCTTGTCTCTTCACTCGTTTGATTTCTTCCCTTTCCTGTTGCTGTCCAAAAAATTGTTTACAGACCCTTTTGCTGAACTCAAGTTCATGTCTAATCTGTATAATCACAACTTGAATTTCTCACCTGCAAGAGCTGTCTCTCCTCATATAAGAACCAACCAAGATGTTGATAG : TCAGTACTTGACAGAGCTGTTAGCAGAAAGGCAGAAGCTTGGACCCTTTACACAAGTTCTTCCAATCTGCAGCCGACTCTTGAATCAAG : AAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAG : CAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT : TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA : GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTG : GATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACAGGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGTAGTTGTTTGTTGTTGAAGTAGAATGATTAATTTGATTTATTTGTTCTTGACAGCTAAGTTAACAAGGGTGATTTCCTTTCCTTTTTGGGATTT</gDNA_template>
            <first_frame> L  I  Q  S  F  L  L  L  L  L  S  L  *  T  K  K  K  K  K  F  S  L  L  L  V  S  S  L  V  *  F  L  P  F  P  V  A  V  Q  K  I  V  Y  R  P  F  C  *  T  Q  V  H  V  *  S  V  *  S  Q  L  E  F  L  T  C  K  S  C  L  S  S  Y  K  N  Q  P  R  C  *  *  :  S  V  L  D  R  A  V  S  R  K  A  E  A  W  T  L  Y  T  S  S  S  N  L  Q  P  T  L  E  S  R :   N  T  *  T  F  W  N  D  S  Q  S  S  T  Q  *  L  *  Q  T  T  T  W  K  P  *  S  C  G  F  N  *  H  D  A  T  C  W  R  K  R  F  R  W  L  E  W  E  W  M  E  R  L  S  R   : A  K  I  R  W  T  T  G  K  A  H  R  L  A  S  F  T  R  E  S  K  F  I  C  C  E  A  G  V  A  L  G  Y  T  C  G  Q  I  S  E   : F  Q  L  C  W  T  A  F  R  S  S  R  *  F  S  E  A  S  G  S  I  Y  W  M  S  G  I  Y  Q  R  K  G  F  N  K  R  C  *  K   : R  G  E  S  E  R  S  S  R  L  *  A  P  Q  *  A  T  A  C  S  T  *  G  R  L  T  H  Q  Y  S  G  C  T  N  E  T  S  *  P  N  Y  *  R  V  A  Q  T  C   : G  *  V  A  G  L  I  *  K  A  T  A  *  R  A  C  F  A  E  Q  Q  F  *  R  R  E  P  P  T  K  G  *  S  I  S  F  *  F  K  R  D  E  T  R  K  N  W  L  V  M  S  A  M  V  C  T  A  A  S  H  L  Q  T  G  G  C  *  S  A  P  K  Y  S  A  L  L  W  T  S  R  C  E  N  S  M  *  Q  R  K  H  S  R  S  K  K  T  S  K  L  I  L  L  T  V  V  V  C  C  *  S  R  M  I  N  L  I  Y  L  F  L  T  A  K  L  T  R  V  I  S  F  P  F  W  D   </first_frame>
            <second_frame>  *  F  K  A  F  S  S  S  S  F  L  Y  K  P  K  K  K  K  S  F  L  F  C  L  S  L  H  S  F  D  F  F  P  F  L  L  L  S  K  K  L  F  T  D  P  F  A  E  L  K  F  M  S  N  L  Y  N  H  N  L  N  F  S  P  A  R  A  V  S  P  H  I  R  T  N  Q  D  V  D  S :   Q  Y  L  T  E  L  L  A  E  R  Q  K  L  G  P  F  T  Q  V  L  P  I  C  S  R  L  L  N  Q   : E  I  L  R  L  S  G  M  I  P  N  Q  V  L  S  D  Y  D  R  L  Q  R  G  S  P  S  P  V  G  S  I  D  M  M  Q  H  V  G  G  K  G  L  G  G  W  N  G  N  G  W  N  A  F  Q  E  :  Q  R  L  G  G  P  Q  G  R  P  I  D  W  Q  A  S  P  G  S  P  S  S  F  V  V  K  R  V  L  R  L  D  I  P  V  D  R  Y  P  N  :  F  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  S  T  G  C  R  V  F  I  R  G  K  G  S  I  K  D  A  E  K  :  E  E  S  L  R  G  L  P  G  Y  E  H  L  N  E  P  L  H  V  L  L  E  A  D  L  P  I  N  I  V  D  V  R  M  K  Q  A  S  Q  I  I  E  E  L  L  R  P  V  :  D  E  S  Q  D  L  Y  K  R  Q  Q  L  R  E  L  A  L  L  N  N  N  F  R  E  E  S  P  Q  P  R  G  S  L  S  P  F  S  S  S  G  M  K  R  A  K  T  G  W  *  *  V  L  W  Y  A  Q  L  L  R  I  S  R  Q  E  D  A  N  L  H  L  N  T  A  R  F  C  G  L  H  V  V  K  I  V  C  D  K  G  N  I  A  D  Q  R  K  P  Q  N  *  F  C  *  L  *  L  F  V  V  E  V  E  *  L  I  *  F  I  C  S  *  Q  L  S  *  Q  G  *  F  P  F  L  F  G  I  </second_frame>
            <third_frame>   D  S  K  L  S  P  P  P  P  F  F  I  N  Q  K  K  K  K  V  F  S  F  A  C  L  F  T  R  L  I  S  S  L  S  C  C  C  P  K  N  C  L  Q  T  L  L  L  N  S  S  S  C  L  I  C  I  I  T  T  *  I  S  H  L  Q  E  L  S  L  L  I  *  E  P  T  K  M  L  I   : V  S  T  *  Q  S  C  *  Q  K  G  R  S  L  D  P  L  H  K  F  F  Q  S  A  A  D  S  *  I  K  :  K  Y  L  D  F  L  E  *  F  P  I  K  Y  S  V  T  M  T  D  Y  N  V  E  A  L  V  L  W  V  Q  L  T  *  C  N  M  L  E  E  K  V  *  V  V  G  M  G  M  D  G  T  P  F  K  S :   K  D  *  V  D  H  R  E  G  P  S  T  G  K  L  H  Q  G  V  Q  V  H  L  L  *  S  G  C  C  A  W  I  Y  L  W  T  D  I  R  I :   S  T  L  L  D  G  F  *  V  L  E  V  I  L  *  S  E  W  K  H  L  L  D  V  G  Y  L  S  E  E  R  V  Q  *  K  M  L  K  K :   R  R  V  *  E  V  F  Q  V  M  S  T  S  M  S  H  C  M  F  Y  L  R  Q  T  Y  P  S  I  *  W  M  Y  E  *  N  K  L  A  K  L  L  K  S  C  S  D  L  W :   M  S  R  R  T  Y  I  K  G  N  S  L  E  S  L  L  C  *  T  T  I  L  E  K  R  A  P  N  Q  G  V  V  Y  L  L  L  V  Q  A  G  *  N  A  Q  K  L  V  G  D  E  C  Y  G  M  H  S  C  F  A  S  P  D  R  R  M  L  I  C  T  *  I  Q  R  A  F  V  D  F  T  L  *  K  *  Y  V  T  K  E  T  *  Q  I  K  E  N  L  K  T  D  F  V  D  C  S  C  L  L  L  K  *  N  D  *  F  D  L  F  V  L  D  S  *  V  N  K  G  D  F  L  S  F  L  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84884" stop="85119"/>
                    <exon start="85253" stop="85341"/>
                    <exon start="85972" stop="86135"/>
                    <exon start="87176" stop="87295"/>
                    <exon start="87629" stop="87745"/>
                    <exon start="87940" stop="88083"/>
                    <exon start="88531" stop="88677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FKAFSSSSFLYKPKKKKSFLFCLSLHSFDFFPFLLLSKKLFTDPFAELKFMSNLYNHNLNFSPARAVSPHIRTNQDVDSQYLTELLAERQKLGPFTQVLPICSRLLNQEILRLSGMIPNQVLSDYDRLQRGSPSPVGSIDMMQHVGGKGLGGWNGNGWNAFQEQRLGGPQGRPIDWQASPGSPSSFVVKRVLRLDIPVDRYPNFNFVGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDAEKEESLRGLPGYEHLNEPLHVLLEADLPINIVDVRMKQASQIIEELLRPVDESQDLYKRQQLRELALLNNNFREESPQPRGSLSPFSSSGMKRAKTGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85685" e_stop="86135"/>
            <exon e_start="87176" e_stop="87295"/>
            <exon e_start="87629" e_stop="87745"/>
            <exon e_start="87940" e_stop="88083"/>
            <exon e_start="88531" e_stop="88933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.965" acc_prob="0.993" e_score="0.988"/>
          <exon-intron don_prob="0.946" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="85685" e_stop="86135" e_length="451"/>
          </exon>
          <intron i_serial="1" don_prob="0.965" acc_prob="0.993">
            <gDNA_intron_boundary i_start="86136" i_stop="87175" i_length="1040"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87176" e_stop="87295" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.000">
            <gDNA_intron_boundary i_start="87296" i_stop="87628" i_length="333"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87629" e_stop="87745" e_length="117"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="87746" i_stop="87939" i_length="194"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="87940" e_stop="88083" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.924" acc_prob="0.994">
            <gDNA_intron_boundary i_start="88084" i_stop="88530" i_length="447"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="88531" e_stop="88933" e_length="403"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85685" stop="86089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86015" stop="86135"/>
              <exon start="87176" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87190" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88083"/>
              <exon start="88531" stop="88840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87190" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87198" stop="87295"/>
              <exon start="87629" stop="87745"/>
              <exon start="87940" stop="88083"/>
              <exon start="88531" stop="88933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368922" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAGGTTAGCATGTCGGTTGCGAAGTGTGTATTCTGTTCCACATAAACTTTAGTCGAATGGTGTTTTCAAAGAGGCAGATTACAGATTGGTTTGTGACCTAATTATTCTTTGAACAAATGTTTGTAGAAGATGAACACTTTTATAGCAAGTTGTAAGAGGTTATCTTATTTTCCTTGTGTCGGCACATATGCCGATGAAACGGTTTAATTTGATGTACGCTATTCTTAATAGCTTTAATTATTCTCCGAATGGAAATTCTGAATTTTAGTTTCAATTCTTTGACAGAAATACTTAGACTTTCTGGAATGATTCCCAATCAAGTACTCAGTGACTATGACAGACTACAACGTGGAAGCCCTAGTCCTGTGGGTTCAATTGACATGATGCAACATGTTGGAGGAAAAGGTTTAGGTGGTTGGAATGGGAATGGATGGAACGCCTTTCAAGAG : CAAAGATTAGGTGGACCACAGGGAAGGCCCATCGACTGGCAAGCTTCACCAGGGAGTCCAAGTTCATTTGTTGTGAAGCGGGTGTTGCGCTTGGATATACCTGTGGACAGATATCCGAAT : TTCAACTTTGTTGGACGGCTTTTAGGTCCTCGAGGTAATTCTCTGAAGCGAGTGGAAGCATCTACTGGATGTCGGGTATTTATCAGAGGAAAGGGTTCAATAAAAGATGCTGAAAAA : GAGGAGAGTCTGAGAGGTCTTCCAGGTTATGAGCACCTCAATGAGCCACTGCATGTTCTACTTGAGGCAGACTTACCCATCAATATAGTGGATGTACGAATGAAACAAGCTAGCCAAATTATTGAAGAGTTGCTCAGACCTGTG : GATGAGTCGCAGGACTTATATAAAAGGCAACAGCTTAGAGAGCTTGCTTTGCTGAACAACAATTTTAGAGAAGAGAGCCCCCAACCAAGGGGTAGTCTATCTCCTTTTAGTTCAAGCGGGATGAAACGCGCAAAAACTGGTTGGTGATGAGTGCTATGGTATGCACAGCTGCTTCGCATCTCCAGACAGGAGGATGCTAATCTGCACCTAAATACAGCGCGCTTTTGTGGACTTCACGTTGTGAAAATAGTATGTGACAAAGGAAACATAGCAGATCAAAGAAAACCTCAAAACTGATTTTGTTGACTGTAGTTGTTTGTTGTTGAAGTAGAATGATTAATTTGATTTATTTGTTCTTGACAGCTAAGTTAACAAGGGTGATTTCCTTTCCTTTTTGGGATTT</gDNA_template>
            <first_frame> L  R  L  A  C  R  L  R  S  V  Y  S  V  P  H  K  L  *  S  N  G  V  F  K  E  A  D  Y  R  L  V  C  D  L  I  I  L  *  T  N  V  C  R  R  *  T  L  L  *  Q  V  V  R  G  Y  L  I  F  L  V  S  A  H  M  P  M  K  R  F  N  L  M  Y  A  I  L  N  S  F  N  Y  S  P  N  G  N  S  E  F  *  F  Q  F  F  D  R  N  T  *  T  F  W  N  D  S  Q  S  S  T  Q  *  L  *  Q  T  T  T  W  K  P  *  S  C  G  F  N  *  H  D  A  T  C  W  R  K  R  F  R  W  L  E  W  E  W  M  E  R  L  S  R   : A  K  I  R  W  T  T  G  K  A  H  R  L  A  S  F  T  R  E  S  K  F  I  C  C  E  A  G  V  A  L  G  Y  T  C  G  Q  I  S  E   : F  Q  L  C  W  T  A  F  R  S  S  R  *  F  S  E  A  S  G  S  I  Y  W  M  S  G  I  Y  Q  R  K  G  F  N  K  R  C  *  K   : R  G  E  S  E  R  S  S  R  L  *  A  P  Q  *  A  T  A  C  S  T  *  G  R  L  T  H  Q  Y  S  G  C  T  N  E  T  S  *  P  N  Y  *  R  V  A  Q  T  C   : G  *  V  A  G  L  I  *  K  A  T  A  *  R  A  C  F  A  E  Q  Q  F  *  R  R  E  P  P  T  K  G  *  S  I  S  F  *  F  K  R  D  E  T  R  K  N  W  L  V  M  S  A  M  V  C  T  A  A  S  H  L  Q  T  G  G  C  *  S  A  P  K  Y  S  A  L  L  W  T  S  R  C  E  N  S  M  *  Q  R  K  H  S  R  S  K  K  T  S  K  L  I  L  L  T  V  V  V  C  C  *  S  R  M  I  N  L  I  Y  L  F  L  T  A  K  L  T  R  V  I  S  F  P  F  W  D   </first_frame>
            <second_frame>  *  G  *  H  V  G  C  E  V  C  I  L  F  H  I  N  F  S  R  M  V  F  S  K  R  Q  I  T  D  W  F  V  T  *  L  F  F  E  Q  M  F  V  E  D  E  H  F  Y  S  K  L  *  E  V  I  L  F  S  L  C  R  H  I  C  R  *  N  G  L  I  *  C  T  L  F  L  I  A  L  I  I  L  R  M  E  I  L  N  F  S  F  N  S  L  T  E  I  L  R  L  S  G  M  I  P  N  Q  V  L  S  D  Y  D  R  L  Q  R  G  S  P  S  P  V  G  S  I  D  M  M  Q  H  V  G  G  K  G  L  G  G  W  N  G  N  G  W  N  A  F  Q  E  :  Q  R  L  G  G  P  Q  G  R  P  I  D  W  Q  A  S  P  G  S  P  S  S  F  V  V  K  R  V  L  R  L  D  I  P  V  D  R  Y  P  N  :  F  N  F  V  G  R  L  L  G  P  R  G  N  S  L  K  R  V  E  A  S  T  G  C  R  V  F  I  R  G  K  G  S  I  K  D  A  E  K  :  E  E  S  L  R  G  L  P  G  Y  E  H  L  N  E  P  L  H  V  L  L  E  A  D  L  P  I  N  I  V  D  V  R  M  K  Q  A  S  Q  I  I  E  E  L  L  R  P  V  :  D  E  S  Q  D  L  Y  K  R  Q  Q  L  R  E  L  A  L  L  N  N  N  F  R  E  E  S  P  Q  P  R  G  S  L  S  P  F  S  S  S  G  M  K  R  A  K  T  G  W  *  *  V  L  W  Y  A  Q  L  L  R  I  S  R  Q  E  D  A  N  L  H  L  N  T  A  R  F  C  G  L  H  V  V  K  I  V  C  D  K  G  N  I  A  D  Q  R  K  P  Q  N  *  F  C  *  L  *  L  F  V  V  E  V  E  *  L  I  *  F  I  C  S  *  Q  L  S  *  Q  G  *  F  P  F  L  F  G  I  </second_frame>
            <third_frame>   K  V  S  M  S  V  A  K  C  V  F  C  S  T  *  T  L  V  E  W  C  F  Q  R  G  R  L  Q  I  G  L  *  P  N  Y  S  L  N  K  C  L  *  K  M  N  T  F  I  A  S  C  K  R  L  S  Y  F  P  C  V  G  T  Y  A  D  E  T  V  *  F  D  V  R  Y  S  *  *  L  *  L  F  S  E  W  K  F  *  I  L  V  S  I  L  *  Q  K  Y  L  D  F  L  E  *  F  P  I  K  Y  S  V  T  M  T  D  Y  N  V  E  A  L  V  L  W  V  Q  L  T  *  C  N  M  L  E  E  K  V  *  V  V  G  M  G  M  D  G  T  P  F  K  S :   K  D  *  V  D  H  R  E  G  P  S  T  G  K  L  H  Q  G  V  Q  V  H  L  L  *  S  G  C  C  A  W  I  Y  L  W  T  D  I  R  I :   S  T  L  L  D  G  F  *  V  L  E  V  I  L  *  S  E  W  K  H  L  L  D  V  G  Y  L  S  E  E  R  V  Q  *  K  M  L  K  K :   R  R  V  *  E  V  F  Q  V  M  S  T  S  M  S  H  C  M  F  Y  L  R  Q  T  Y  P  S  I  *  W  M  Y  E  *  N  K  L  A  K  L  L  K  S  C  S  D  L  W :   M  S  R  R  T  Y  I  K  G  N  S  L  E  S  L  L  C  *  T  T  I  L  E  K  R  A  P  N  Q  G  V  V  Y  L  L  L  V  Q  A  G  *  N  A  Q  K  L  V  G  D  E  C  Y  G  M  H  S  C  F  A  S  P  D  R  R  M  L  I  C  T  *  I  Q  R  A  F  V  D  F  T  L  *  K  *  Y  V  T  K  E  T  *  Q  I  K  E  N  L  K  T  D  F  V  D  C  S  C  L  L  L  K  *  N  D  *  F  D  L  F  V  L  D  S  *  V  N  K  G  D  F  L  S  F  L  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85899" stop="86135"/>
                    <exon start="87176" stop="87295"/>
                    <exon start="87629" stop="87745"/>
                    <exon start="87940" stop="88083"/>
                    <exon start="88531" stop="88677"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTLFLIALIILRMEILNFSFNSLTEILRLSGMIPNQVLSDYDRLQRGSPSPVGSIDMMQHVGGKGLGGWNGNGWNAFQEQRLGGPQGRPIDWQASPGSPSSFVVKRVLRLDIPVDRYPNFNFVGRLLGPRGNSLKRVEASTGCRVFIRGKGSIKDAEKEESLRGLPGYEHLNEPLHVLLEADLPINIVDVRMKQASQIIEELLRPVDESQDLYKRQQLRELALLNNNFREESPQPRGSLSPFSSSGMKRAKTGW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="93876" PGL_stop="96249"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93876" e_stop="94111"/>
            <exon e_start="95872" e_stop="96249"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93876" e_stop="94111" e_length="236"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94112" i_stop="95871" i_length="1760"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="95872" e_stop="96249" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93876" stop="94111"/>
              <exon start="95872" stop="96249"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93882" stop="94111"/>
              <exon start="95872" stop="96192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93890" stop="94111"/>
              <exon start="95872" stop="96098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93895" stop="94111"/>
              <exon start="95872" stop="96178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93895" stop="94111"/>
              <exon start="95872" stop="96098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420672" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93895" stop="94111"/>
              <exon start="95872" stop="96098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93900" stop="94111"/>
              <exon start="95872" stop="96112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93900" stop="94111"/>
              <exon start="95872" stop="96105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93901" stop="94111"/>
              <exon start="95872" stop="96104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E613081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93905" stop="94111"/>
              <exon start="95872" stop="96190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93906" stop="94111"/>
              <exon start="95872" stop="96105"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619151" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93906" stop="94111"/>
              <exon start="95872" stop="96085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E483603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93921" stop="94111"/>
              <exon start="95872" stop="96112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93926" stop="94111"/>
              <exon start="95872" stop="96098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93927" stop="94111"/>
              <exon start="95872" stop="96128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93986" stop="94111"/>
              <exon start="95872" stop="96179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTCTCTATCTCGAACCCTAGCTTGTTCATCGATCGGAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTC : GTACGTGCAGCATTTCCTGGAGAAGGAGAAGTTAGAACACAGATACTAAGTTCTGTTCGTCATTTGTCCGGTGACCAACGTATAAATGAAGTTCTGTTTGTCACTTGTCTGGGGAGGACTGCTATTTCTATTTCTGTTTGAATAGGAAATAAGTCATGCTTTGGAACTGCTACCATCATTTTGAGGAATTTTACTTTTATGGTTAATTAAATGCAACTAGTTGTTTTATGGTCTGTTGAAACTTTTGTGCATCCTGAATCTTGTGCTGAATTGGAGTCTGCAAAATAGTTCATCATACACACCATTTATTTGCTATTTCATCAATTGTCGCGTTCACTCTGAAATAAAATATGGTGAATATAGCATAATTAATTATTC</gDNA_template>
            <first_frame> F  F  S  I  S  N  P  S  L  F  I  D  R  R  N  H  R  *  V  S  A  K  M  G  K  Q  P  V  K  L  K  A  V  V  Y  A  L  S  P  F  Q  Q  K  I  M  P  G  L  W  K  D  L  P  G  K  I  H  H  K  V  S  E  N  W  I  S  A  T  L  L  L  G  P  L  I  G  T  Y  S :   Y  V  Q  H  F  L  E  K  E  K  L  E  H  R  Y  *  V  L  F  V  I  C  P  V  T  N  V  *  M  K  F  C  L  S  L  V  W  G  G  L  L  F  L  F  L  F  E  *  E  I  S  H  A  L  E  L  L  P  S  F  *  G  I  L  L  L  W  L  I  K  C  N  *  L  F  Y  G  L  L  K  L  L  C  I  L  N  L  V  L  N  W  S  L  Q  N  S  S  S  Y  T  P  F  I  C  Y  F  I  N  C  R  V  H  S  E  I  K  Y  G  E  Y  S  I  I  N  Y   </first_frame>
            <second_frame>  S  S  L  S  R  T  L  A  C  S  S  I  G  E  I  T  V  K  F  Q  L  R  W  G  N  N  Q  L  S  *  K  Q  L  F  T  L  Y  R  H  S  N  R  R  L  C  Q  V  Y  G  R  T  F  L  V  K  S  I  T  K  S  L  K  I  G  S  A  L  L  S  C  S  V  L  S  L  A  H  T   : R  T  C  S  I  S  W  R  R  R  S  *  N  T  D  T  K  F  C  S  S  F  V  R  *  P  T  Y  K  *  S  S  V  C  H  L  S  G  E  D  C  Y  F  Y  F  C  L  N  R  K  *  V  M  L  W  N  C  Y  H  H  F  E  E  F  Y  F  Y  G  *  L  N  A  T  S  C  F  M  V  C  *  N  F  C  A  S  *  I  L  C  *  I  G  V  C  K  I  V  H  H  T  H  H  L  F  A  I  S  S  I  V  A  F  T  L  K  *  N  M  V  N  I  A  *  L  I  I  </second_frame>
            <third_frame>   L  L  Y  L  E  P  *  L  V  H  R  S  E  K  S  P  L  S  F  S  *  D  G  E  T  T  S  *  A  E  S  S  C  L  R  F  I  A  I  P  T  E  D  Y  A  R  S  M  E  G  P  S  W  *  N  P  S  Q  S  L  *  K  L  D  Q  R  Y  S  L  A  R  S  S  H  W  H  I  L  :  V  R  A  A  F  P  G  E  G  E  V  R  T  Q  I  L  S  S  V  R  H  L  S  G  D  Q  R  I  N  E  V  L  F  V  T  C  L  G  R  T  A  I  S  I  S  V  *  I  G  N  K  S  C  F  G  T  A  T  I  I  L  R  N  F  T  F  M  V  N  *  M  Q  L  V  V  L  W  S  V  E  T  F  V  H  P  E  S  C  A  E  L  E  S  A  K  *  F  I  I  H  T  I  Y  L  L  F  H  Q  L  S  R  S  L  *  N  K  I  W  *  I  *  H  N  *  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93930" stop="94111"/>
                    <exon start="95872" stop="95920"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSAKMGKQPVKLKAVVYALSPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLIGTYSYVQHFLEKEKLEHRY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="93914" e_stop="94648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93914" e_stop="94648" e_length="735"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93914" stop="94648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAATCACCGTTAAGTTTCAGCTAAGATGGGGAAACAACCAGTTAAGCTGAAAGCAGTTGTTTACGCTTTATCGCCATTCCAACAGAAGATTATGCCAGGTCTATGGAAGGACCTTCCTGGTAAAATCCATCACAAAGTCTCTGAAAATTGGATCAGCGCTACTCTCTTGCTCGGTCCTCTCATTGGCACATACTCGTAAGTAGTTCCATCAAGTAAATTCAATCTCAATCCCTAACTTTGTTGAGATCGGCTGTGTTAATTAATCATCTATACTTGGAAGCATTTCGTGATATTGTACCTGTAAATATTTGTCATTTCTGTCTTCTTTGCTTCGTCGTTTTCACAGTTCTTCTCTCAGGCTCTGATTCCCGCATCCAAAGTACTTGTTAACAAATTGGTTCCACTTTTGATTGCATAGATTTAAGCTCTCCCGTATAATTTCGTTGTTTTTAATTGGAATAGAATGAAGTTGCTTATATATCCAATATATGACAGCTTATTCGATTCTTACCAAATCAATCAATTAATTAACTATGAATCAATTCAAAATTATGTATTCCAATTTAGTGAGCGCCTAGATGAAGCACACTCCTGTTAATTTTGTATCAAAGGATACCTCACAGTTATGACTATTAGGACGTTTTCATTGACCTATGTCATACCTCTGAATTTGAAGCTGTGTGTGCTTTGAGACGGCTCAAATTGACGGGTCCATTTCATACTTGTTTTTGG</gDNA_template>
            <first_frame> E  K  S  P  L  S  F  S  *  D  G  E  T  T  S  *  A  E  S  S  C  L  R  F  I  A  I  P  T  E  D  Y  A  R  S  M  E  G  P  S  W  *  N  P  S  Q  S  L  *  K  L  D  Q  R  Y  S  L  A  R  S  S  H  W  H  I  L  V  S  S  S  I  K  *  I  Q  S  Q  S  L  T  L  L  R  S  A  V  L  I  N  H  L  Y  L  E  A  F  R  D  I  V  P  V  N  I  C  H  F  C  L  L  C  F  V  V  F  T  V  L  L  S  G  S  D  S  R  I  Q  S  T  C  *  Q  I  G  S  T  F  D  C  I  D  L  S  S  P  V  *  F  R  C  F  *  L  E  *  N  E  V  A  Y  I  S  N  I  *  Q  L  I  R  F  L  P  N  Q  S  I  N  *  L  *  I  N  S  K  L  C  I  P  I  *  *  A  P  R  *  S  T  L  L  L  I  L  Y  Q  R  I  P  H  S  Y  D  Y  *  D  V  F  I  D  L  C  H  T  S  E  F  E  A  V  C  A  L  R  R  L  K  L  T  G  P  F  H  T  C  F  W </first_frame>
            <second_frame>  R  N  H  R  *  V  S  A  K  M  G  K  Q  P  V  K  L  K  A  V  V  Y  A  L  S  P  F  Q  Q  K  I  M  P  G  L  W  K  D  L  P  G  K  I  H  H  K  V  S  E  N  W  I  S  A  T  L  L  L  G  P  L  I  G  T  Y  S  *  V  V  P  S  S  K  F  N  L  N  P  *  L  C  *  D  R  L  C  *  L  I  I  Y  T  W  K  H  F  V  I  L  Y  L  *  I  F  V  I  S  V  F  F  A  S  S  F  S  Q  F  F  S  Q  A  L  I  P  A  S  K  V  L  V  N  K  L  V  P  L  L  I  A  *  I  *  A  L  P  Y  N  F  V  V  F  N  W  N  R  M  K  L  L  I  Y  P  I  Y  D  S  L  F  D  S  Y  Q  I  N  Q  L  I  N  Y  E  S  I  Q  N  Y  V  F  Q  F  S  E  R  L  D  E  A  H  S  C  *  F  C  I  K  G  Y  L  T  V  M  T  I  R  T  F  S  L  T  Y  V  I  P  L  N  L  K  L  C  V  L  *  D  G  S  N  *  R  V  H  F  I  L  V  F   </second_frame>
            <third_frame>   E  I  T  V  K  F  Q  L  R  W  G  N  N  Q  L  S  *  K  Q  L  F  T  L  Y  R  H  S  N  R  R  L  C  Q  V  Y  G  R  T  F  L  V  K  S  I  T  K  S  L  K  I  G  S  A  L  L  S  C  S  V  L  S  L  A  H  T  R  K  *  F  H  Q  V  N  S  I  S  I  P  N  F  V  E  I  G  C  V  N  *  S  S  I  L  G  S  I  S  *  Y  C  T  C  K  Y  L  S  F  L  S  S  L  L  R  R  F  H  S  S  S  L  R  L  *  F  P  H  P  K  Y  L  L  T  N  W  F  H  F  *  L  H  R  F  K  L  S  R  I  I  S  L  F  L  I  G  I  E  *  S  C  L  Y  I  Q  Y  M  T  A  Y  S  I  L  T  K  S  I  N  *  L  T  M  N  Q  F  K  I  M  Y  S  N  L  V  S  A  *  M  K  H  T  P  V  N  F  V  S  K  D  T  S  Q  L  *  L  L  G  R  F  H  *  P  M  S  Y  L  *  I  *  S  C  V  C  F  E  T  A  Q  I  D  G  S  I  S  Y  L  F  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="99277" PGL_stop="96175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99277" e_stop="99218"/>
            <exon e_start="98218" e_stop="97717"/>
            <exon e_start="97311" e_stop="97230"/>
            <exon e_start="97103" e_stop="96815"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99277" e_stop="99218" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98218" e_stop="97717" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97311" e_stop="97230" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="97103" e_stop="96815" e_length="289"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99277" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99277" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99218"/>
              <exon start="98218" stop="97964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99270" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553782" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99262" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99260" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99252" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99248" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99246" stop="99218"/>
              <exon start="98218" stop="97959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99245" stop="99218"/>
              <exon start="98218" stop="97765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99238" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99237" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99234" stop="99218"/>
              <exon start="98218" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99229" stop="99218"/>
              <exon start="98218" stop="97829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97717"/>
              <exon start="97311" stop="97233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98214" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98213" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98211" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98185" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98184" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98169" stop="97725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98166" stop="97903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429956" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98115" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98113" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98113" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98111" stop="97912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98101" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98072" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98065" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98057" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98047" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98033" stop="97773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98027" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484128" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97987" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97958" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281815" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97955" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97954" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97953" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97951" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355402" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97946" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97920" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97904" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557252" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97875" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97870" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97864" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97864" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97862" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97860" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96815"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429292" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97849" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97766" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97761" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96828"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E601942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97718" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618095" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG : GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG : CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGAATTGATACTTCTTGTGACAGGTGGTATTACATTCTTTAGT</gDNA_template>
            <first_frame> T  I  V  K  P  Q  I  N  C  S  D  A  P  F  E  *  P  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  M  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  C  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  P  K  R  L  C  A  V  P  S  S  S  F  L  D  V  K  R  S  L  S  A  G  S   : G  D  S  P  S  S  A  E  L  I  I  *  D  T  S  Q  R  T  V  F  S  Q  M  V  *  M  Q  S :   F  L  A  T  M  V  D  L  L  H  V  N  L  E  G  P  S  L  H  L  L  S  E  L  K  W  H  N  L  T  N  S  T  F  S  F  L  V  C  *  M  E  L  C  C  L  N  F  C  L  C  M  N  L  I  S  I  Q  L  N  I  F  E  I  I  M  F  C  I  *  N  F  L  Y  G  *  E  L  V  S  F  D  E  L  I  L  L  V  T  G  G  I  T  F  F  S </first_frame>
            <second_frame>  Q  L  L  S  R  R  S  I  A  V  T  P  H  L  N  S  H  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  C  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  A  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  P  R  G  S  A  P  C  Q  V  Q  V  S  W  T  S  K  D  H  C  Q  Q  E  V  :  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  P  R  W  C  E  C  K   : A  S  W  Q  P  W  S  T  C  C  T  S  T  W  K  G  L  P  Y  I  C  L  V  N  *  S  G  I  I  S  Q  I  A  H  L  V  F  *  S  V  E  W  N  F  V  A  *  I  F  V  F  A  *  T  *  L  V  S  N  *  T  F  L  K  L  *  C  S  V  F  E  I  S  C  T  V  K  S  S  *  V  L  M  N  *  Y  F  L  *  Q  V  V  L  H  S  L   </second_frame>
            <third_frame>   N  C  *  A  A  D  Q  L  Q  *  R  P  I  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  K  F  S  R  T  D  Y  L  R  Y  K  S  E  N  R  I  L  P  D  G  V  N  A  K  :  L  L  G  N  H  G  R  L  A  A  R  Q  P  G  R  A  F  L  T  S  A  *  *  I  E  V  A  *  S  H  K  *  H  I  *  F  S  S  L  L  N  G  T  L  L  L  E  F  L  S  L  H  E  P  N  *  Y  P  I  E  H  F  *  N  Y  N  V  L  Y  L  K  F  L  V  R  L  R  A  R  K  F  *  *  I  D  T  S  C  D  R  W  Y  Y  I  L  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99233" stop="99218"/>
                    <exon start="98218" stop="97717"/>
                    <exon start="97311" stop="97230"/>
                    <exon start="97103" stop="97038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLRYKSENRILPDGVNAKLLGNHGRLAARQPGRAFLTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="99277" e_stop="99218"/>
            <exon e_start="98218" e_stop="97717"/>
            <exon e_start="97311" e_stop="97230"/>
            <exon e_start="97103" e_stop="96855"/>
            <exon e_start="96209" e_stop="96175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.543"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99277" e_stop="99218" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98218" e_stop="97717" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97311" e_stop="97230" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97103" e_stop="96855" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="96854" i_stop="96210" i_length="645"/>
          </intron>
          <exon e_serial="5" e_score="0.543">
            <gDNA_exon_boundary e_start="96209" e_stop="96175" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99277" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96951"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99277" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99218"/>
              <exon start="98218" stop="97964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99270" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558491" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714275" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464964" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322694" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99262" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99260" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453970" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E570399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462200" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99255" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99252" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99248" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99246" stop="99218"/>
              <exon start="98218" stop="97959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99245" stop="99218"/>
              <exon start="98218" stop="97765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99238" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99237" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99234" stop="99218"/>
              <exon start="98218" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99229" stop="99218"/>
              <exon start="98218" stop="97829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97717"/>
              <exon start="97311" stop="97233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98214" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98213" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456028" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98211" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98185" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98184" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98169" stop="97725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98166" stop="97903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98144" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429956" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98115" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255466" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98113" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98113" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552901" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98111" stop="97912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98101" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96997"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98072" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="97060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557728" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98065" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98057" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98047" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98033" stop="97773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98027" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484128" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97987" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97958" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281815" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97955" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97954" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97953" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419140" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97946" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97920" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97875" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97870" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96888"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97864" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97864" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97862" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97849" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230818" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97766" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E587078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97718" stop="97717"/>
              <exon start="97311" stop="97230"/>
              <exon start="97103" stop="96869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E618095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97279" stop="97230"/>
              <exon start="97103" stop="96855"/>
              <exon start="96209" stop="96175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG : GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG : CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGA : AGTGAACGCGACAATTGATGAAATAGCAAATAAAT</gDNA_template>
            <first_frame> T  I  V  K  P  Q  I  N  C  S  D  A  P  F  E  *  P  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  M  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  C  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  P  K  R  L  C  A  V  P  S  S  S  F  L  D  V  K  R  S  L  S  A  G  S   : G  D  S  P  S  S  A  E  L  I  I  *  D  T  S  Q  R  T  V  F  S  Q  M  V  *  M  Q  S :   F  L  A  T  M  V  D  L  L  H  V  N  L  E  G  P  S  L  H  L  L  S  E  L  K  W  H  N  L  T  N  S  T  F  S  F  L  V  C  *  M  E  L  C  C  L  N  F  C  L  C  M  N  L  I  S  I  Q  L  N  I  F  E  I  I  M  F  C  I  *  N  F  L  Y  G  *  E  L  V  S  F  D  E :   V  N  A  T  I  D  E  I  A  N  K  </first_frame>
            <second_frame>  Q  L  L  S  R  R  S  I  A  V  T  P  H  L  N  S  H  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  C  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  A  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  P  R  G  S  A  P  C  Q  V  Q  V  S  W  T  S  K  D  H  C  Q  Q  E  V  :  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  P  R  W  C  E  C  K   : A  S  W  Q  P  W  S  T  C  C  T  S  T  W  K  G  L  P  Y  I  C  L  V  N  *  S  G  I  I  S  Q  I  A  H  L  V  F  *  S  V  E  W  N  F  V  A  *  I  F  V  F  A  *  T  *  L  V  S  N  *  T  F  L  K  L  *  C  S  V  F  E  I  S  C  T  V  K  S  S  *  V  L  M   : K  *  T  R  Q  L  M  K  *  Q  I  N </second_frame>
            <third_frame>   N  C  *  A  A  D  Q  L  Q  *  R  P  I  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  K  F  S  R  T  D  Y  L  R  Y  K  S  E  N  R  I  L  P  D  G  V  N  A  K  :  L  L  G  N  H  G  R  L  A  A  R  Q  P  G  R  A  F  L  T  S  A  *  *  I  E  V  A  *  S  H  K  *  H  I  *  F  S  S  L  L  N  G  T  L  L  L  E  F  L  S  L  H  E  P  N  *  Y  P  I  E  H  F  *  N  Y  N  V  L  Y  L  K  F  L  V  R  L  R  A  R  K  F  *  *  :  S  E  R  D  N  *  *  N  S  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99233" stop="99218"/>
                    <exon start="98218" stop="97717"/>
                    <exon start="97311" stop="97230"/>
                    <exon start="97103" stop="97038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLRYKSENRILPDGVNAKLLGNHGRLAARQPGRAFLTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="99272" e_stop="99218"/>
            <exon e_start="98218" e_stop="97717"/>
            <exon e_start="97311" e_stop="97236"/>
            <exon e_start="97103" e_stop="97097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.571"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99272" e_stop="99218" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98218" e_stop="97717" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.987">
            <gDNA_intron_boundary i_start="97716" i_stop="97312" i_length="405"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97311" e_stop="97236" e_length="76"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97235" i_stop="97104" i_length="132"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="97103" e_stop="97097" e_length="7"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99218"/>
              <exon start="98218" stop="97964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311386" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
              <exon start="97103" stop="97097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99259" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E571693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99257" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99252" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99246" stop="99218"/>
              <exon start="98218" stop="97959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99245" stop="99218"/>
              <exon start="98218" stop="97765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99237" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99234" stop="99218"/>
              <exon start="98218" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99229" stop="99218"/>
              <exon start="98218" stop="97829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
              <exon start="97311" stop="97265"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98214" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98185" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98184" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98169" stop="97725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98166" stop="97903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98111" stop="97912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98033" stop="97773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567825" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG : GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAAT : CTTCTTG</gDNA_template>
            <first_frame> C  *  A  A  D  Q  L  Q  *  R  P  I  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  K  F  S  R  T  D  Y  L  R  Y  K  S  E  N  R  I  L  P  D  G  V  N  :  L  L  </first_frame>
            <second_frame>  V  K  P  Q  I  N  C  S  D  A  P  F  E  *  P  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  M  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  C  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  P  K  R  L  C  A  V  P  S  S  S  F  L  D  V  K  R  S  L  S  A  G  S   : G  D  S  P  S  S  A  E  L  I  I  *  D  T  S  Q  R  T  V  F  S  Q  M  V  *  I :   F  L </second_frame>
            <third_frame>   L  S  R  R  S  I  A  V  T  P  H  L  N  S  H  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  C  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  A  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  P  R  G  S  A  P  C  Q  V  Q  V  S  W  T  S  K  D  H  C  Q  Q  E  V  :  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  P  R  W  C  E   : S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99233" stop="99218"/>
                    <exon start="98218" stop="97717"/>
                    <exon start="97311" stop="97236"/>
                    <exon start="97103" stop="97098"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLRYKSENRILPDGVNLL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="99272" e_stop="99218"/>
            <exon e_start="98218" e_stop="97717"/>
            <exon e_start="97315" e_stop="97230"/>
            <exon e_start="97103" e_stop="96855"/>
            <exon e_start="96209" e_stop="96175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.960"/>
          <exon-intron don_prob="0.000" acc_prob="0.943" e_score="0.900"/>
          <exon-only e_score="0.543"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="99272" e_stop="99218" e_length="55"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="99217" i_stop="98219" i_length="999"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="98218" e_stop="97717" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="97716" i_stop="97316" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="0.960">
            <gDNA_exon_boundary e_start="97315" e_stop="97230" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97229" i_stop="97104" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="0.900">
            <gDNA_exon_boundary e_start="97103" e_stop="96855" e_length="249"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.943">
            <gDNA_intron_boundary i_start="96854" i_stop="96210" i_length="645"/>
          </intron>
          <exon e_serial="5" e_score="0.543">
            <gDNA_exon_boundary e_start="96209" e_stop="96175" e_length="35"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99272" stop="99218"/>
              <exon start="98218" stop="97964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280248" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99269" stop="99218"/>
              <exon start="98218" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99265" stop="99218"/>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E464963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99264" stop="99218"/>
              <exon start="98218" stop="97836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321160" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99263" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99261" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99258" stop="99218"/>
              <exon start="98218" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99256" stop="99218"/>
              <exon start="98218" stop="97929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99254" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99253" stop="99218"/>
              <exon start="98218" stop="97822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99252" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E557205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99251" stop="99218"/>
              <exon start="98218" stop="97796"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99250" stop="99218"/>
              <exon start="98218" stop="97869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99249" stop="99218"/>
              <exon start="98218" stop="98063"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99246" stop="99218"/>
              <exon start="98218" stop="97959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E474266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99245" stop="99218"/>
              <exon start="98218" stop="97765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99243" stop="99218"/>
              <exon start="98218" stop="97785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99239" stop="99218"/>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99237" stop="99218"/>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479803" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99235" stop="99218"/>
              <exon start="98218" stop="97717"/>
              <exon start="97315" stop="97240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612176" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99234" stop="99218"/>
              <exon start="98218" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336895" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99229" stop="99218"/>
              <exon start="98218" stop="97829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97784"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372946" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309340" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284939" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98218" stop="97967"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98217" stop="97832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98215" stop="97902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E404909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98214" stop="97835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248510" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98185" stop="97909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98184" stop="97886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572815" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262089" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98183" stop="97862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98182" stop="97891"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98169" stop="97725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98166" stop="97903"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98111" stop="97912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98033" stop="97773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97279" stop="97230"/>
              <exon start="97103" stop="96855"/>
              <exon start="96209" stop="96175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTAAGCCGCAGATCAATTGCAGTGACGCCCCATTTGAATAGCCATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGATGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGCGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCCCAAGAGGCTCTGCGCCGTGCCAAGTTCAAGTTTCCTGGACGTCAAAAGATCATTGTCAGCAGGAAGTG : TCAGGGGATTCACCAAGTTCAGCCGAACTGATTATCTGAGATACAAGTCAGAGAACCGTATTCTCCCAGATGGTGTGAATGCAAAG : CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGTGAATTGAAGTGGCATAATCTCACAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTGCTTGAATTTTTGTCTTTGCATGAACCTAATTAGTATCCAATTGAACATTTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTACGGTTAAGAGCTCGTAAGTTTTGATGA : AGTGAACGCGACAATTGATGAAATAGCAAATAAAT</gDNA_template>
            <first_frame> C  *  A  A  D  Q  L  Q  *  R  P  I  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  C :   Q  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  P  R  W  C  E  C  K   : A  S  W  Q  P  W  S  T  C  C  T  S  T  W  K  G  L  P  Y  I  C  L  V  N  *  S  G  I  I  S  Q  I  A  H  L  V  F  *  S  V  E  W  N  F  V  A  *  I  F  V  F  A  *  T  *  L  V  S  N  *  T  F  L  K  L  *  C  S  V  F  E  I  S  C  T  V  K  S  S  *  V  L  M   : K  *  T  R  Q  L  M  K  *  Q  I  N </first_frame>
            <second_frame>  V  K  P  Q  I  N  C  S  D  A  P  F  E  *  P  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  M  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  C  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  P  K  R  L  C  A  V  P  S  S  S  F  L  D  V  K  R  S  L  S  A  G  S   : V  R  G  F  T  K  F  S  R  T  D  Y  L  R  Y  K  S  E  N  R  I  L  P  D  G  V  N  A  K  :  L  L  G  N  H  G  R  L  A  A  R  Q  P  G  R  A  F  L  T  S  A  *  *  I  E  V  A  *  S  H  K  *  H  I  *  F  S  S  L  L  N  G  T  L  L  L  E  F  L  S  L  H  E  P  N  *  Y  P  I  E  H  F  *  N  Y  N  V  L  Y  L  K  F  L  V  R  L  R  A  R  K  F  *  *  :  S  E  R  D  N  *  *  N  S  K  *   </second_frame>
            <third_frame>   L  S  R  R  S  I  A  V  T  P  H  L  N  S  H  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  C  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  A  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  P  R  G  S  A  P  C  Q  V  Q  V  S  W  T  S  K  D  H  C  Q  Q  E  V  :  S  G  D  S  P  S  S  A  E  L  I  I  *  D  T  S  Q  R  T  V  F  S  Q  M  V  *  M  Q  S :   F  L  A  T  M  V  D  L  L  H  V  N  L  E  G  P  S  L  H  L  L  S  E  L  K  W  H  N  L  T  N  S  T  F  S  F  L  V  C  *  M  E  L  C  C  L  N  F  C  L  C  M  N  L  I  S  I  Q  L  N  I  F  E  I  I  M  F  C  I  *  N  F  L  Y  G  *  E  L  V  S  F  D  E :   V  N  A  T  I  D  E  I  A  N  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="99233" stop="99218"/>
                    <exon start="98218" stop="97717"/>
                    <exon start="97315" stop="97285"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKCQGIHQVQPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="97832" PGL_stop="98217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97832" e_stop="98217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="97832" e_stop="98217" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97832" stop="98217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACCAATTGCAACACGAGCACAAACACCCTGGGGCTTACCAAAAGCTCCCCTCATACCAGTTTGGAGTCTATCAGCTCCAGCACACGACAACATCTTGTTAATTCGCAAAACATGGAATGGATGAACCCTGACCCTTAGGTGAAAAGCATCTTTCCCGGCAGACTTGGTCATGTACTTGTTGCAAGCAATACGGGCAGCTTCAAGTGCCTCACTTGAGACATTCTCCTTCTCCCAACTGACCAAATGCACACAGAAAGGGAACTCATCAACTCCCTTTTTCTTCATGCCCACATCATAAATCCTGATCTTTGGATCAGGGACACCACGGCAAAACCTTGATTTTGGGTAAGGCTTGTTCTTAATCTGACGATAACATCTTGCAGGT</gDNA_template>
            <first_frame> D  Q  L  Q  H  E  H  K  H  P  G  A  Y  Q  K  L  P  S  Y  Q  F  G  V  Y  Q  L  Q  H  T  T  T  S  C  *  F  A  K  H  G  M  D  E  P  *  P  L  G  E  K  H  L  S  R  Q  T  W  S  C  T  C  C  K  Q  Y  G  Q  L  Q  V  P  H  L  R  H  S  P  S  P  N  *  P  N  A  H  R  K  G  T  H  Q  L  P  F  S  S  C  P  H  H  K  S  *  S  L  D  Q  G  H  H  G  K  T  L  I  L  G  K  A  C  S  *  S  D  D  N  I  L  Q   </first_frame>
            <second_frame>  T  N  C  N  T  S  T  N  T  L  G  L  T  K  S  S  P  H  T  S  L  E  S  I  S  S  S  T  R  Q  H  L  V  N  S  Q  N  M  E  W  M  N  P  D  P  *  V  K  S  I  F  P  G  R  L  G  H  V  L  V  A  S  N  T  G  S  F  K  C  L  T  *  D  I  L  L  L  P  T  D  Q  M  H  T  E  R  E  L  I  N  S  L  F  L  H  A  H  I  I  N  P  D  L  W  I  R  D  T  T  A  K  P  *  F  W  V  R  L  V  L  N  L  T  I  T  S  C  R  </second_frame>
            <third_frame>   P  I  A  T  R  A  Q  T  P  W  G  L  P  K  A  P  L  I  P  V  W  S  L  S  A  P  A  H  D  N  I  L  L  I  R  K  T  W  N  G  *  T  L  T  L  R  *  K  A  S  F  P  A  D  L  V  M  Y  L  L  Q  A  I  R  A  A  S  S  A  S  L  E  T  F  S  F  S  Q  L  T  K  C  T  Q  K  G  N  S  S  T  P  F  F  F  M  P  T  S  *  I  L  I  F  G  S  G  T  P  R  Q  N  L  D  F  G  *  G  L  F  L  I  *  R  *  H  L  A  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="104882" PGL_stop="104182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104882" e_stop="104182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="104882" e_stop="104182" e_length="701"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104882" stop="104182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578389" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAAACATATATCTTATTGCTATACACTTATAATTATGCAATATACATACATTTTAATTCGGTTCAATTATATGCAAAGCAAATTTTATAATAATATTGCAGCGAAATAGGCAGCGAATTATACAATTGTAGTTAAATAGGATAACGAATTATACAATTGCAGCGAAATAGGCCAGCGAATTATACAATTTAGGTCAGCGAATTATACAATTTTATGTTTGCTATGGAGCGCAATTATGCAAACTTTGTTATAGCATACAAATATGAATTTTTTGTTTGTTATATGTGAAAGTTGCCCATTAATTAAAGAGTCAATAAAATAGCGGTCTAATCAAGTCCTAAGCAGCCCAAGGTTTGACCCGTCAACCCAAAAATGAATAATATTATGGGAAAAGGGTATGATATACCCCTCAACTTTGTCATTTGAAACTGATATACCCCTCGTTATGAAAGTGGCTCATATATACCCTTACCGTTATACAAATGGTTCACATATACCTCTGCCGTTACAAAATGAGCTCATATATACCCTTCATTTAACGAAAGTGAAAAAATTACTTTTAAATTTATAATTTTACTTTAATTTTAAAAAAAAATATATTTAGGGGCATATATGATTCTTTTTTCAAAGTTCAAGGTATATTTCAAATTTTTTTAATACATAAATTATTTTTTTGACTTATTTATTATAATTATTTGA</gDNA_template>
            <first_frame> E  K  H  I  S  Y  C  Y  T  L  I  I  M  Q  Y  T  Y  I  L  I  R  F  N  Y  M  Q  S  K  F  Y  N  N  I  A  A  K  *  A  A  N  Y  T  I  V  V  K  *  D  N  E  L  Y  N  C  S  E  I  G  Q  R  I  I  Q  F  R  S  A  N  Y  T  I  L  C  L  L  W  S  A  I  M  Q  T  L  L  *  H  T  N  M  N  F  L  F  V  I  C  E  S  C  P  L  I  K  E  S  I  K  *  R  S  N  Q  V  L  S  S  P  R  F  D  P  S  T  Q  K  *  I  I  L  W  E  K  G  M  I  Y  P  S  T  L  S  F  E  T  D  I  P  L  V  M  K  V  A  H  I  Y  P  Y  R  Y  T  N  G  S  H  I  P  L  P  L  Q  N  E  L  I  Y  T  L  H  L  T  K  V  K  K  L  L  L  N  L  *  F  Y  F  N  F  K  K  K  Y  I  *  G  H  I  *  F  F  F  Q  S  S  R  Y  I  S  N  F  F  N  T  *  I  I  F  L  T  Y  L  L  *  L  F   </first_frame>
            <second_frame>  K  N  I  Y  L  I  A  I  H  L  *  L  C  N  I  H  T  F  *  F  G  S  I  I  C  K  A  N  F  I  I  I  L  Q  R  N  R  Q  R  I  I  Q  L  *  L  N  R  I  T  N  Y  T  I  A  A  K  *  A  S  E  L  Y  N  L  G  Q  R  I  I  Q  F  Y  V  C  Y  G  A  Q  L  C  K  L  C  Y  S  I  Q  I  *  I  F  C  L  L  Y  V  K  V  A  H  *  L  K  S  Q  *  N  S  G  L  I  K  S  *  A  A  Q  G  L  T  R  Q  P  K  N  E  *  Y  Y  G  K  R  V  *  Y  T  P  Q  L  C  H  L  K  L  I  Y  P  S  L  *  K  W  L  I  Y  T  L  T  V  I  Q  M  V  H  I  Y  L  C  R  Y  K  M  S  S  Y  I  P  F  I  *  R  K  *  K  N  Y  F  *  I  Y  N  F  T  L  I  L  K  K  N  I  F  R  G  I  Y  D  S  F  F  K  V  Q  G  I  F  Q  I  F  L  I  H  K  L  F  F  *  L  I  Y  Y  N  Y  L  </second_frame>
            <third_frame>   K  T  Y  I  L  L  L  Y  T  Y  N  Y  A  I  Y  I  H  F  N  S  V  Q  L  Y  A  K  Q  I  L  *  *  Y  C  S  E  I  G  S  E  L  Y  N  C  S  *  I  G  *  R  I  I  Q  L  Q  R  N  R  P  A  N  Y  T  I  *  V  S  E  L  Y  N  F  M  F  A  M  E  R  N  Y  A  N  F  V  I  A  Y  K  Y  E  F  F  V  C  Y  M  *  K  L  P  I  N  *  R  V  N  K  I  A  V  *  S  S  P  K  Q  P  K  V  *  P  V  N  P  K  M  N  N  I  M  G  K  G  Y  D  I  P  L  N  F  V  I  *  N  *  Y  T  P  R  Y  E  S  G  S  Y  I  P  L  P  L  Y  K  W  F  T  Y  T  S  A  V  T  K  *  A  H  I  Y  P  S  F  N  E  S  E  K  I  T  F  K  F  I  I  L  L  *  F  *  K  K  I  Y  L  G  A  Y  M  I  L  F  S  K  F  K  V  Y  F  K  F  F  *  Y  I  N  Y  F  F  D  L  F  I  I  I  I  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104504" stop="104310"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IILWEKGMIYPSTLSFETDIPLVMKVAHIYPYRYTNGSHIPLPLQNELIYTLHLTKVKKLLLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="104826" PGL_stop="105182"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104826" e_stop="105012"/>
            <exon e_start="105045" e_stop="105182"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.884"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="104826" e_stop="105012" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="105013" i_stop="105044" i_length="32"/>
          </intron>
          <exon e_serial="2" e_score="0.884">
            <gDNA_exon_boundary e_start="105045" e_stop="105182" e_length="138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104826" stop="105012"/>
              <exon start="105045" stop="105182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E393076" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104826" stop="104978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392727" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAATGTATGTATATTGCATAATTATAAGTGTATAGCAATAAGATATATGTTTTTCTCTCGCTTTATACGAAAATAGAAACACAATATATACACTTCTGTTATATAAAGCTAGAGAAAATTGTATTTCACTGCAATTGTATAATTCACAATTGTATAATTCGTTGACCTTTTTCTTTGCAATATTT : GAAGTAAAATGTTTGTAAATTGTATAATTAAGTGTATAACACGAAGATATATGTTTTTGCATGTGTATATACAATTTTGTCTCGCTTTATACAAAACAGAAACAAAATTTATACACTTCTGTGTATAAAGCAAGAGGG</gDNA_template>
            <first_frame> *  N  V  C  I  L  H  N  Y  K  C  I  A  I  R  Y  M  F  F  S  R  F  I  R  K  *  K  H  N  I  Y  T  S  V  I  *  S  *  R  K  L  Y  F  T  A  I  V  *  F  T  I  V  *  F  V  D  L  F  L  C  N  I   : *  S  K  M  F  V  N  C  I  I  K  C  I  T  R  R  Y  M  F  L  H  V  Y  I  Q  F  C  L  A  L  Y  K  T  E  T  K  F  I  H  F  C  V  *  S  K  R  </first_frame>
            <second_frame>  K  M  Y  V  Y  C  I  I  I  S  V  *  Q  *  D  I  C  F  S  L  A  L  Y  E  N  R  N  T  I  Y  T  L  L  L  Y  K  A  R  E  N  C  I  S  L  Q  L  Y  N  S  Q  L  Y  N  S  L  T  F  F  F  A  I  F  :  E  V  K  C  L  *  I  V  *  L  S  V  *  H  E  D  I  C  F  C  M  C  I  Y  N  F  V  S  L  Y  T  K  Q  K  Q  N  L  Y  T  S  V  Y  K  A  R  G </second_frame>
            <third_frame>   K  C  M  Y  I  A  *  L  *  V  Y  S  N  K  I  Y  V  F  L  S  L  Y  T  K  I  E  T  Q  Y  I  H  F  C  Y  I  K  L  E  K  I  V  F  H  C  N  C  I  I  H  N  C  I  I  R  *  P  F  S  L  Q  Y  L :   K  *  N  V  C  K  L  Y  N  *  V  Y  N  T  K  I  Y  V  F  A  C  V  Y  T  I  L  S  R  F  I  Q  N  R  N  K  I  Y  T  L  L  C  I  K  Q  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0014B21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="105531" PGL_stop="110692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="105531" e_stop="106099"/>
            <exon e_start="107653" e_stop="107883"/>
            <exon e_start="109348" e_stop="109506"/>
            <exon e_start="109597" e_stop="109749"/>
            <exon e_start="109959" e_stop="110042"/>
            <exon e_start="110257" e_stop="110692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105531" e_stop="106099" e_length="569"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107653" e_stop="107883" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109348" e_stop="109506" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109597" e_stop="109749" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.680">
            <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109959" e_stop="110042" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="110257" e_stop="110692" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105531" stop="106099"/>
              <exon start="107653" stop="107838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105550" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="105979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105571" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105572" stop="106062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105586" stop="106099"/>
              <exon start="107653" stop="107669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="106098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="106099"/>
              <exon start="107653" stop="107758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105596" stop="106099"/>
              <exon start="107653" stop="107883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="105984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105598" stop="106099"/>
              <exon start="107653" stop="107707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105600" stop="106099"/>
              <exon start="107653" stop="107875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105603" stop="106099"/>
              <exon start="107653" stop="107831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105604" stop="106099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105630" stop="106030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105652" stop="106099"/>
              <exon start="107653" stop="107829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105670" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105772" stop="106099"/>
              <exon start="107653" stop="107801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105977" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727313" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107698" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109428" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109428" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110032" stop="110042"/>
              <exon start="110257" stop="110692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110294" stop="110543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110357" stop="110687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATCAAGCTTTCTTCTTTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC : GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG : GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG : ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG : GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG : ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTCATTCG</gDNA_template>
            <first_frame> A  Y  Q  A  F  F  F  R  T  P  F  S  P  S  P  L  C  V  S  T  A  V  I  F  I  H  F  Q  Q  W  Q  Q  P  W  F  S  I  Q  N  P  H  R  S  Y  L  Q  L  D  P  T  Y  R  H  T  T  F  L  P  K  T  A  K  T  T  S  T  L  A  *  N  L  Y  N  G  S  W  S  S  S  R  S  K  R  N  T  *  R  T  N  *  R  I  S  A  V  N  I  Y  G  H  R  K  R  *  N  G  S  S  R  C  R  *  *  L  A  S  S  W  R  *  L  T  R  I  T  P  *  L  V  Q  R  R  D  L  I  T  T  *  G  Y  S  A  R  L  I  G  S  Y  L  S  L  R  L  L  W  L  Y  I  V  T  R  M  L  *  L  M  F  C  L  L  R  L  T  R  V  F  R  C  *  A  N  Q  R  S  L  M  L  P  T  T :   I  L  E  D  V  T  F  K  S  R  K  F  V  R  L  L  S  Y  L  *  L  I  M  S  C  T  S  R  L  V  *  T  L  P  V  V  S  C  F  M  V  H  Q  V  L  G  K  L  C  L  Q  R  L  L  L  I  T  L  L  L  P  S  *  G  W  L  A  Q  N  L  F  R  S  T  W  V  R :   V  H  E  W  F  V  M  C  S  V  L  P  K  K  M  L  L  P  L  Y  L  L  M  R  *  M  Q  L  P  L  R  G  L  M  L  K  L  E  L  I  G  R  S  S  V  S  *  W  S  C  L  I  R :   W  T  D  L  T  R  Q  *  M  *  K  L  S  W  Q  L  T  E  L  I  L  W  T  L  H  F  C  V  L  E  G  L  I  G  R  L  N  F  L  C  L  I  G  V  K  R  G  L  F  F  R :   S  V  L  L  R  *  T  *  V  T  R  L  T  W  K  I  M  F  L  A  L  I  K  L  V  L  L  R :   L  Q  L  Y  V  R  K  Q  V  C  M  Q  C  E  R  I  D  M  S  Y  S  P  R  T  L  K  R  V  T  G  P  M  *  R  S  R  T  L  T  S  S  S  I  S  D  L  *  K  *  M  S  *  Y  F  *  R  L  T  L  Y  T  Q  Y  E  N  S  F  *  Y  V  F  N  G  T  A  G  L  S  N  V  C  W  F  V  P  F  *  I  P  L  F  V  R  S  E  S  A  A  *  A  V  *  L  S  I  *  A  A  *  V  S  H  S  K  G  C  V  C  R  L  S  V  I  L  M  P  H  S  V  G  W  L  I  S  Y  I  S  F  A  V  V  H  F  H  S </first_frame>
            <second_frame>  L  I  K  L  S  S  F  A  R  H  S  H  L  L  L  C  V  Y  Q  L  P  *  F  L  S  T  S  N  N  G  S  S  H  G  S  R  S  K  T  L  T  G  A  T  C  N  S  T  R  L  I  V  T  R  R  S  F  R  K  R  R  R  R  P  L  R  S  P  E  I  S  T  T  A  A  G  V  H  R  D  P  R  G  I  R  E  G  R  T  E  E  S  P  P  *  T  F  T  G  T  G  R  G  K  T  D  P  V  G  A  V  S  N  W  P  V  H  G  D  D  *  P  E  *  R  H  S  W  F  N  D  G  I  *  L  L  R  E  D  T  Q  H  D  *  S  G  A  T  *  A  F  G  F  C  G  F  T  S  S  L  E  C  S  S  *  C  F  A  S  *  G  *  L  E  Y  F  A  A  K  P  I  R  E  A  *  C  Y  L  Q   : R  Y  W  R  M  *  H  S  K  A  G  N  S  *  G  C  *  V  T  F  D  S  S  *  V  V  Q  A  D  W  Y  R  P  S  P  W  C  L  A  L  W  S  T  R  Y  W  E  N  Y  A  C  K  G  C  C  S  S  H  Y  C  C  L  H  K  G  G  W  L  R  I  C  S  E  V  L  G  *   : G  S  T  N  G  S  *  C  V  P  S  C  Q  R  K  C  S  C  H  Y  I  Y  *  *  G  R  C  N  C  H  C  E  V  *  C  S  N  W  S  *  *  G  G  P  A  Y  L  D  G  V  A  *  S   : D  G  R  I  *  P  D  S  E  C  E  S  Y  H  G  N  *  Q  S  *  Y  F  G  P  C  T  S  A  S  W  K  A  *  S  E  D  *  I  S  F  A  *  *  A  S  K  E  A  C  F  S   : G  L  Y  C  *  D  E  P  R  *  R  G  *  L  G  R  L  C  F  S  P  *  *  N  *  C  C  *   : D  C  S  Y  M  S  G  S  R  Y  A  C  S  A  K  E  S  I  C  H  T  P  Q  G  L  *  K  G  L  Q  D  Q  C  E  E  A  G  H  *  L  R  V  L  *  V  I  C  K  S  R  *  A  N  I  F  R  G  *  P  C  T  L  N  M  K  I  L  F  N  M  F  L  M  V  L  L  V  C  Q  T  S  A  G  L  Y  R  S  R  F  H  Y  L  F  V  Q  K  V  Q  R  E  Q  S  N  Y  P  F  K  L  L  K  Y  R  I  R  R  G  V  S  V  D  S  Q  S  F  *  C  R  I  L  W  D  G  *  S  H  I  *  A  L  Q  *  Y  I  F  I   </second_frame>
            <third_frame>   L  S  S  F  L  L  S  H  A  I  L  T  F  S  F  V  C  I  N  C  R  N  F  Y  P  L  P  T  M  A  A  A  M  V  L  D  P  K  P  S  P  E  L  P  A  T  R  P  D  L  S  S  H  D  V  P  S  E  N  G  E  D  D  L  Y  A  R  L  K  S  L  Q  R  Q  L  E  F  I  E  I  Q  E  E  Y  V  K  D  E  L  K  N  L  R  R  E  H  L  R  A  Q  E  E  V  K  R  I  Q  S  V  P  L  V  I  G  Q  F  M  E  M  I  D  Q  N  N  A  I  V  G  S  T  T  G  S  N  Y  Y  V  R  I  L  S  T  I  N  R  E  L  L  K  P  S  A  S  V  A  L  H  R  H  S  N  A  L  V  D  V  L  P  P  E  A  D  S  S  I  S  L  L  S  Q  S  E  K  P  D  V  T  Y  N  :  D  I  G  G  C  D  I  Q  K  Q  E  I  R  E  A  V  E  L  P  L  T  H  H  E  L  Y  K  Q  I  G  I  D  P  P  R  G  V  L  L  Y  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  H  H  T  T  A  A  F  I  R  V  V  G  S  E  F  V  Q  K  Y  L  G  E  :  G  P  R  M  V  R  D  V  F  R  L  A  K  E  N  A  P  A  I  I  F  I  D  E  V  D  A  I  A  T  A  R  F  D  A  Q  T  G  A  D  R  E  V  Q  R  I  L  M  E  L  L  N  Q  :  M  D  G  F  D  Q  T  V  N  V  K  V  I  M  A  T  N  R  A  D  T  L  D  P  A  L  L  R  P  G  R  L  D  R  K  I  E  F  P  L  P  D  R  R  Q  K  R  L  V  F  Q  :  V  C  T  A  K  M  N  L  G  D  E  V  D  L  E  D  Y  V  S  R  P  D  K  I  S  A  A  E  :  I  A  A  I  C  Q  E  A  G  M  H  A  V  R  K  N  R  Y  V  I  L  P  K  D  F  E  K  G  Y  R  T  N  V  K  K  P  D  T  D  F  E  F  Y  K  *  S  V  K  V  D  E  L  I  F  L  E  V  D  L  V  H  S  I  *  K  F  F  L  I  C  F  *  W  Y  C  W  F  V  K  R  L  L  V  C  T  V  L  D  S  I  I  C  S  F  R  K  C  S  V  S  S  L  I  I  H  L  S  C  L  S  I  A  F  E  G  V  C  L  *  T  L  S  H  F  N  A  A  F  C  G  M  A  N  L  I  Y  K  L  C  S  S  T  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105533" stop="106099"/>
                    <exon start="107653" stop="107883"/>
                    <exon start="109348" stop="109506"/>
                    <exon start="109597" stop="109749"/>
                    <exon start="109959" stop="110042"/>
                    <exon start="110257" stop="110391"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSFLLSHAILTFSFVCINCRNFYPLPTMAAAMVLDPKPSPELPATRPDLSSHDVPSENGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110430" stop="110630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCTLNMKILFNMFLMVLLVCQTSAGLYRSRFHYLFVQKVQREQSNYPFKLLKYRIRRGVSVDSQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="105531" e_stop="106099"/>
            <exon e_start="107653" e_stop="107883"/>
            <exon e_start="109348" e_stop="109506"/>
            <exon e_start="109597" e_stop="109749"/>
            <exon e_start="109959" e_stop="110687"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.680" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105531" e_stop="106099" e_length="569"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107653" e_stop="107883" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109348" e_stop="109506" e_length="159"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109597" e_stop="109749" e_length="153"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.680">
            <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="109959" e_stop="110687" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105531" stop="106099"/>
              <exon start="107653" stop="107838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105550" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="105979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105565" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105571" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105572" stop="106062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105584" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109607"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105586" stop="106099"/>
              <exon start="107653" stop="107669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="106098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="106099"/>
              <exon start="107653" stop="107758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105596" stop="106099"/>
              <exon start="107653" stop="107883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="105984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105598" stop="106099"/>
              <exon start="107653" stop="107707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105600" stop="106099"/>
              <exon start="107653" stop="107875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105603" stop="106099"/>
              <exon start="107653" stop="107831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105604" stop="106099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105630" stop="106030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105652" stop="106099"/>
              <exon start="107653" stop="107829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105670" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105772" stop="106099"/>
              <exon start="107653" stop="107801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105828" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109695"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109712" stop="109749"/>
              <exon start="109959" stop="110636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109712" stop="109749"/>
              <exon start="109959" stop="110580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110294" stop="110543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110357" stop="110687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATCAAGCTTTCTTCTTTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC : GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG : GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG : ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG : GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAGGTTTGTCTCTTTATACTTCATCTATTTTTTCGACTGATAACAGGATTCTTCACTATTGATTCAAAATGTTGATGTCTACTGTTACAACTAAGAGTAGTTCTTTATTTTGCTTCATCTGCTTTGGTCCTTCTATTTTTAAAATGTGAATGATCTTTATAATTGAAGAGTCAATTTGACCAACACGACTGTGATGCACATGTTGCAATGTCTACAGATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTC</gDNA_template>
            <first_frame> A  Y  Q  A  F  F  F  R  T  P  F  S  P  S  P  L  C  V  S  T  A  V  I  F  I  H  F  Q  Q  W  Q  Q  P  W  F  S  I  Q  N  P  H  R  S  Y  L  Q  L  D  P  T  Y  R  H  T  T  F  L  P  K  T  A  K  T  T  S  T  L  A  *  N  L  Y  N  G  S  W  S  S  S  R  S  K  R  N  T  *  R  T  N  *  R  I  S  A  V  N  I  Y  G  H  R  K  R  *  N  G  S  S  R  C  R  *  *  L  A  S  S  W  R  *  L  T  R  I  T  P  *  L  V  Q  R  R  D  L  I  T  T  *  G  Y  S  A  R  L  I  G  S  Y  L  S  L  R  L  L  W  L  Y  I  V  T  R  M  L  *  L  M  F  C  L  L  R  L  T  R  V  F  R  C  *  A  N  Q  R  S  L  M  L  P  T  T :   I  L  E  D  V  T  F  K  S  R  K  F  V  R  L  L  S  Y  L  *  L  I  M  S  C  T  S  R  L  V  *  T  L  P  V  V  S  C  F  M  V  H  Q  V  L  G  K  L  C  L  Q  R  L  L  L  I  T  L  L  L  P  S  *  G  W  L  A  Q  N  L  F  R  S  T  W  V  R :   V  H  E  W  F  V  M  C  S  V  L  P  K  K  M  L  L  P  L  Y  L  L  M  R  *  M  Q  L  P  L  R  G  L  M  L  K  L  E  L  I  G  R  S  S  V  S  *  W  S  C  L  I  R :   W  T  D  L  T  R  Q  *  M  *  K  L  S  W  Q  L  T  E  L  I  L  W  T  L  H  F  C  V  L  E  G  L  I  G  R  L  N  F  L  C  L  I  G  V  K  R  G  L  F  F  R :   S  V  L  L  R  *  T  *  V  T  R  L  T  W  K  I  M  F  L  A  L  I  K  L  V  L  L  R  F  V  S  L  Y  F  I  Y  F  F  D  *  *  Q  D  S  S  L  L  I  Q  N  V  D  V  Y  C  Y  N  *  E  *  F  F  I  L  L  H  L  L  W  S  F  Y  F  *  N  V  N  D  L  Y  N  *  R  V  N  L  T  N  T  T  V  M  H  M  L  Q  C  L  Q  I  A  A  I  C  Q  E  A  G  M  H  A  V  R  K  N  R  Y  V  I  L  P  K  D  F  E  K  G  Y  R  T  N  V  K  K  P  D  T  D  F  E  F  Y  K  *  S  V  K  V  D  E  L  I  F  L  E  V  D  L  V  H  S  I  *  K  F  F  L  I  C  F  *  W  Y  C  W  F  V  K  R  L  L  V  C  T  V  L  D  S  I  I  C  S  F  R  K  C  S  V  S  S  L  I  I  H  L  S  C  L  S  I  A  F  E  G  V  C  L  *  T  L  S  H  F  N  A  A  F  C  G  M  A  N  L  I  Y  K  L  C  S  S  T  F   </first_frame>
            <second_frame>  L  I  K  L  S  S  F  A  R  H  S  H  L  L  L  C  V  Y  Q  L  P  *  F  L  S  T  S  N  N  G  S  S  H  G  S  R  S  K  T  L  T  G  A  T  C  N  S  T  R  L  I  V  T  R  R  S  F  R  K  R  R  R  R  P  L  R  S  P  E  I  S  T  T  A  A  G  V  H  R  D  P  R  G  I  R  E  G  R  T  E  E  S  P  P  *  T  F  T  G  T  G  R  G  K  T  D  P  V  G  A  V  S  N  W  P  V  H  G  D  D  *  P  E  *  R  H  S  W  F  N  D  G  I  *  L  L  R  E  D  T  Q  H  D  *  S  G  A  T  *  A  F  G  F  C  G  F  T  S  S  L  E  C  S  S  *  C  F  A  S  *  G  *  L  E  Y  F  A  A  K  P  I  R  E  A  *  C  Y  L  Q   : R  Y  W  R  M  *  H  S  K  A  G  N  S  *  G  C  *  V  T  F  D  S  S  *  V  V  Q  A  D  W  Y  R  P  S  P  W  C  L  A  L  W  S  T  R  Y  W  E  N  Y  A  C  K  G  C  C  S  S  H  Y  C  C  L  H  K  G  G  W  L  R  I  C  S  E  V  L  G  *   : G  S  T  N  G  S  *  C  V  P  S  C  Q  R  K  C  S  C  H  Y  I  Y  *  *  G  R  C  N  C  H  C  E  V  *  C  S  N  W  S  *  *  G  G  P  A  Y  L  D  G  V  A  *  S   : D  G  R  I  *  P  D  S  E  C  E  S  Y  H  G  N  *  Q  S  *  Y  F  G  P  C  T  S  A  S  W  K  A  *  S  E  D  *  I  S  F  A  *  *  A  S  K  E  A  C  F  S   : G  L  Y  C  *  D  E  P  R  *  R  G  *  L  G  R  L  C  F  S  P  *  *  N  *  C  C  *  G  L  S  L  Y  T  S  S  I  F  S  T  D  N  R  I  L  H  Y  *  F  K  M  L  M  S  T  V  T  T  K  S  S  S  L  F  C  F  I  C  F  G  P  S  I  F  K  M  *  M  I  F  I  I  E  E  S  I  *  P  T  R  L  *  C  T  C  C  N  V  Y  R  L  Q  L  Y  V  R  K  Q  V  C  M  Q  C  E  R  I  D  M  S  Y  S  P  R  T  L  K  R  V  T  G  P  M  *  R  S  R  T  L  T  S  S  S  I  S  D  L  *  K  *  M  S  *  Y  F  *  R  L  T  L  Y  T  Q  Y  E  N  S  F  *  Y  V  F  N  G  T  A  G  L  S  N  V  C  W  F  V  P  F  *  I  P  L  F  V  R  S  E  S  A  A  *  A  V  *  L  S  I  *  A  A  *  V  S  H  S  K  G  C  V  C  R  L  S  V  I  L  M  P  H  S  V  G  W  L  I  S  Y  I  S  F  A  V  V  H  F  </second_frame>
            <third_frame>   L  S  S  F  L  L  S  H  A  I  L  T  F  S  F  V  C  I  N  C  R  N  F  Y  P  L  P  T  M  A  A  A  M  V  L  D  P  K  P  S  P  E  L  P  A  T  R  P  D  L  S  S  H  D  V  P  S  E  N  G  E  D  D  L  Y  A  R  L  K  S  L  Q  R  Q  L  E  F  I  E  I  Q  E  E  Y  V  K  D  E  L  K  N  L  R  R  E  H  L  R  A  Q  E  E  V  K  R  I  Q  S  V  P  L  V  I  G  Q  F  M  E  M  I  D  Q  N  N  A  I  V  G  S  T  T  G  S  N  Y  Y  V  R  I  L  S  T  I  N  R  E  L  L  K  P  S  A  S  V  A  L  H  R  H  S  N  A  L  V  D  V  L  P  P  E  A  D  S  S  I  S  L  L  S  Q  S  E  K  P  D  V  T  Y  N  :  D  I  G  G  C  D  I  Q  K  Q  E  I  R  E  A  V  E  L  P  L  T  H  H  E  L  Y  K  Q  I  G  I  D  P  P  R  G  V  L  L  Y  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  H  H  T  T  A  A  F  I  R  V  V  G  S  E  F  V  Q  K  Y  L  G  E  :  G  P  R  M  V  R  D  V  F  R  L  A  K  E  N  A  P  A  I  I  F  I  D  E  V  D  A  I  A  T  A  R  F  D  A  Q  T  G  A  D  R  E  V  Q  R  I  L  M  E  L  L  N  Q  :  M  D  G  F  D  Q  T  V  N  V  K  V  I  M  A  T  N  R  A  D  T  L  D  P  A  L  L  R  P  G  R  L  D  R  K  I  E  F  P  L  P  D  R  R  Q  K  R  L  V  F  Q  :  V  C  T  A  K  M  N  L  G  D  E  V  D  L  E  D  Y  V  S  R  P  D  K  I  S  A  A  E  V  C  L  F  I  L  H  L  F  F  R  L  I  T  G  F  F  T  I  D  S  K  C  *  C  L  L  L  Q  L  R  V  V  L  Y  F  A  S  S  A  L  V  L  L  F  L  K  C  E  *  S  L  *  L  K  S  Q  F  D  Q  H  D  C  D  A  H  V  A  M  S  T  D  C  S  Y  M  S  G  S  R  Y  A  C  S  A  K  E  S  I  C  H  T  P  Q  G  L  *  K  G  L  Q  D  Q  C  E  E  A  G  H  *  L  R  V  L  *  V  I  C  K  S  R  *  A  N  I  F  R  G  *  P  C  T  L  N  M  K  I  L  F  N  M  F  L  M  V  L  L  V  C  Q  T  S  A  G  L  Y  R  S  R  F  H  Y  L  F  V  Q  K  V  Q  R  E  Q  S  N  Y  P  F  K  L  L  K  Y  R  I  R  R  G  V  S  V  D  S  Q  S  F  *  C  R  I  L  W  D  G  *  S  H  I  *  A  L  Q  *  Y  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105533" stop="106099"/>
                    <exon start="107653" stop="107883"/>
                    <exon start="109348" stop="109506"/>
                    <exon start="109597" stop="109749"/>
                    <exon start="109959" stop="110114"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1263</number_coding_nucleotides>
                  <number_encoded_amino_acids>421</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSFLLSHAILTFSFVCINCRNFYPLPTMAAAMVLDPKPSPELPATRPDLSSHDVPSENGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEVCLFILHLFFRLITGFFTIDSKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110430" stop="110630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCTLNMKILFNMFLMVLLVCQTSAGLYRSRFHYLFVQKVQREQSNYPFKLLKYRIRRGVSVDSQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="105531" e_stop="106099"/>
            <exon e_start="107653" e_stop="107883"/>
            <exon e_start="109348" e_stop="109380"/>
            <exon e_start="109716" e_stop="109749"/>
            <exon e_start="109959" e_stop="110042"/>
            <exon e_start="110257" e_stop="110692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="105531" e_stop="106099" e_length="569"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.995">
            <gDNA_intron_boundary i_start="106100" i_stop="107652" i_length="1553"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107653" e_stop="107883" e_length="231"/>
          </exon>
          <intron i_serial="2" don_prob="0.842" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109348" e_stop="109380" e_length="33"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="109381" i_stop="109715" i_length="335"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109716" e_stop="109749" e_length="34"/>
          </exon>
          <intron i_serial="4" don_prob="0.936" acc_prob="0.680">
            <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="109959" e_stop="110042" e_length="84"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="110257" e_stop="110692" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105531" stop="106099"/>
              <exon start="107653" stop="107838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105550" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E469770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105555" stop="105979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105571" stop="106099"/>
              <exon start="107653" stop="107726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450713" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105572" stop="106062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105586" stop="106099"/>
              <exon start="107653" stop="107669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105592" stop="106098"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105593" stop="106099"/>
              <exon start="107653" stop="107758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105596" stop="106099"/>
              <exon start="107653" stop="107883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E456549" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="106099"/>
              <exon start="107653" stop="107733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E567890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105597" stop="105984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105598" stop="106099"/>
              <exon start="107653" stop="107707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586044" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105599" stop="106099"/>
              <exon start="107653" stop="107727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105600" stop="106099"/>
              <exon start="107653" stop="107875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105603" stop="106099"/>
              <exon start="107653" stop="107831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105604" stop="106099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E438233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105630" stop="106030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E480574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105652" stop="106099"/>
              <exon start="107653" stop="107829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105669" stop="106099"/>
              <exon start="107653" stop="107883"/>
              <exon start="109348" stop="109380"/>
              <exon start="109716" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707061" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105670" stop="106099"/>
              <exon start="107653" stop="107830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="105772" stop="106099"/>
              <exon start="107653" stop="107801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110032" stop="110042"/>
              <exon start="110257" stop="110692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110294" stop="110543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110357" stop="110687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTATCAAGCTTTCTTCTTTCGCACGCCATTCTCACCTTCTCCTTTGTGTGTATCAACTGCCGTAATTTTTATCCACTTCCAACAATGGCAGCAGCCATGGTTCTCGATCCAAAACCCTCACCGGAGCTACCTGCAACTCGACCCGACTTATCGTCACACGACGTTCCTTCCGAAAACGGCGAAGACGACCTCTACGCTCGCCTGAAATCTCTACAACGGCAGCTGGAGTTCATCGAGATCCAAGAGGAATACGTGAAGGACGAACTGAAGAATCTCCGCCGTGAACATTTACGGGCACAGGAAGAGGTAAAACGGATCCAGTCGGTGCCGTTAGTAATTGGCCAGTTCATGGAGATGATTGACCAGAATAACGCCATAGTTGGTTCAACGACGGGATCTAATTACTACGTGAGGATACTCAGCACGATTAATCGGGAGCTACTTAAGCCTTCGGCTTCTGTGGCTTTACATCGTCACTCGAATGCTCTAGTTGATGTTTTGCCTCCTGAGGCTGACTCGAGTATTTCGCTGCTAAGCCAATCAGAGAAGCCTGATGTTACCTACAAC : GATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG : GGTCCACGAATGGTTCGTGATGTGTTCCGTCTT : GCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG : GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG : ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTCATTCG</gDNA_template>
            <first_frame> A  Y  Q  A  F  F  F  R  T  P  F  S  P  S  P  L  C  V  S  T  A  V  I  F  I  H  F  Q  Q  W  Q  Q  P  W  F  S  I  Q  N  P  H  R  S  Y  L  Q  L  D  P  T  Y  R  H  T  T  F  L  P  K  T  A  K  T  T  S  T  L  A  *  N  L  Y  N  G  S  W  S  S  S  R  S  K  R  N  T  *  R  T  N  *  R  I  S  A  V  N  I  Y  G  H  R  K  R  *  N  G  S  S  R  C  R  *  *  L  A  S  S  W  R  *  L  T  R  I  T  P  *  L  V  Q  R  R  D  L  I  T  T  *  G  Y  S  A  R  L  I  G  S  Y  L  S  L  R  L  L  W  L  Y  I  V  T  R  M  L  *  L  M  F  C  L  L  R  L  T  R  V  F  R  C  *  A  N  Q  R  S  L  M  L  P  T  T :   I  L  E  D  V  T  F  K  S  R  K  F  V  R  L  L  S  Y  L  *  L  I  M  S  C  T  S  R  L  V  *  T  L  P  V  V  S  C  F  M  V  H  Q  V  L  G  K  L  C  L  Q  R  L  L  L  I  T  L  L  L  P  S  *  G  W  L  A  Q  N  L  F  R  S  T  W  V  R :   V  H  E  W  F  V  M  C  S  V  L :   P  D  R  R  Q  K  R  L  V  F  Q  :  V  C  T  A  K  M  N  L  G  D  E  V  D  L  E  D  Y  V  S  R  P  D  K  I  S  A  A  E  :  I  A  A  I  C  Q  E  A  G  M  H  A  V  R  K  N  R  Y  V  I  L  P  K  D  F  E  K  G  Y  R  T  N  V  K  K  P  D  T  D  F  E  F  Y  K  *  S  V  K  V  D  E  L  I  F  L  E  V  D  L  V  H  S  I  *  K  F  F  L  I  C  F  *  W  Y  C  W  F  V  K  R  L  L  V  C  T  V  L  D  S  I  I  C  S  F  R  K  C  S  V  S  S  L  I  I  H  L  S  C  L  S  I  A  F  E  G  V  C  L  *  T  L  S  H  F  N  A  A  F  C  G  M  A  N  L  I  Y  K  L  C  S  S  T  F  S  F  </first_frame>
            <second_frame>  L  I  K  L  S  S  F  A  R  H  S  H  L  L  L  C  V  Y  Q  L  P  *  F  L  S  T  S  N  N  G  S  S  H  G  S  R  S  K  T  L  T  G  A  T  C  N  S  T  R  L  I  V  T  R  R  S  F  R  K  R  R  R  R  P  L  R  S  P  E  I  S  T  T  A  A  G  V  H  R  D  P  R  G  I  R  E  G  R  T  E  E  S  P  P  *  T  F  T  G  T  G  R  G  K  T  D  P  V  G  A  V  S  N  W  P  V  H  G  D  D  *  P  E  *  R  H  S  W  F  N  D  G  I  *  L  L  R  E  D  T  Q  H  D  *  S  G  A  T  *  A  F  G  F  C  G  F  T  S  S  L  E  C  S  S  *  C  F  A  S  *  G  *  L  E  Y  F  A  A  K  P  I  R  E  A  *  C  Y  L  Q   : R  Y  W  R  M  *  H  S  K  A  G  N  S  *  G  C  *  V  T  F  D  S  S  *  V  V  Q  A  D  W  Y  R  P  S  P  W  C  L  A  L  W  S  T  R  Y  W  E  N  Y  A  C  K  G  C  C  S  S  H  Y  C  C  L  H  K  G  G  W  L  R  I  C  S  E  V  L  G  *   : G  S  T  N  G  S  *  C  V  P  S   : C  L  I  G  V  K  R  G  L  F  F  R :   S  V  L  L  R  *  T  *  V  T  R  L  T  W  K  I  M  F  L  A  L  I  K  L  V  L  L  R :   L  Q  L  Y  V  R  K  Q  V  C  M  Q  C  E  R  I  D  M  S  Y  S  P  R  T  L  K  R  V  T  G  P  M  *  R  S  R  T  L  T  S  S  S  I  S  D  L  *  K  *  M  S  *  Y  F  *  R  L  T  L  Y  T  Q  Y  E  N  S  F  *  Y  V  F  N  G  T  A  G  L  S  N  V  C  W  F  V  P  F  *  I  P  L  F  V  R  S  E  S  A  A  *  A  V  *  L  S  I  *  A  A  *  V  S  H  S  K  G  C  V  C  R  L  S  V  I  L  M  P  H  S  V  G  W  L  I  S  Y  I  S  F  A  V  V  H  F  H  S </second_frame>
            <third_frame>   L  S  S  F  L  L  S  H  A  I  L  T  F  S  F  V  C  I  N  C  R  N  F  Y  P  L  P  T  M  A  A  A  M  V  L  D  P  K  P  S  P  E  L  P  A  T  R  P  D  L  S  S  H  D  V  P  S  E  N  G  E  D  D  L  Y  A  R  L  K  S  L  Q  R  Q  L  E  F  I  E  I  Q  E  E  Y  V  K  D  E  L  K  N  L  R  R  E  H  L  R  A  Q  E  E  V  K  R  I  Q  S  V  P  L  V  I  G  Q  F  M  E  M  I  D  Q  N  N  A  I  V  G  S  T  T  G  S  N  Y  Y  V  R  I  L  S  T  I  N  R  E  L  L  K  P  S  A  S  V  A  L  H  R  H  S  N  A  L  V  D  V  L  P  P  E  A  D  S  S  I  S  L  L  S  Q  S  E  K  P  D  V  T  Y  N  :  D  I  G  G  C  D  I  Q  K  Q  E  I  R  E  A  V  E  L  P  L  T  H  H  E  L  Y  K  Q  I  G  I  D  P  P  R  G  V  L  L  Y  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  H  H  T  T  A  A  F  I  R  V  V  G  S  E  F  V  Q  K  Y  L  G  E  :  G  P  R  M  V  R  D  V  F  R  L  :  A  *  *  A  S  K  E  A  C  F  S   : G  L  Y  C  *  D  E  P  R  *  R  G  *  L  G  R  L  C  F  S  P  *  *  N  *  C  C  *   : D  C  S  Y  M  S  G  S  R  Y  A  C  S  A  K  E  S  I  C  H  T  P  Q  G  L  *  K  G  L  Q  D  Q  C  E  E  A  G  H  *  L  R  V  L  *  V  I  C  K  S  R  *  A  N  I  F  R  G  *  P  C  T  L  N  M  K  I  L  F  N  M  F  L  M  V  L  L  V  C  Q  T  S  A  G  L  Y  R  S  R  F  H  Y  L  F  V  Q  K  V  Q  R  E  Q  S  N  Y  P  F  K  L  L  K  Y  R  I  R  R  G  V  S  V  D  S  Q  S  F  *  C  R  I  L  W  D  G  *  S  H  I  *  A  L  Q  *  Y  I  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="105533" stop="106099"/>
                    <exon start="107653" stop="107883"/>
                    <exon start="109348" stop="109380"/>
                    <exon start="109716" stop="109721"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSSFLLSHAILTFSFVCINCRNFYPLPTMAAAMVLDPKPSPELPATRPDLSSHDVPSENGEDDLYARLKSLQRQLEFIEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110430" stop="110630"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCTLNMKILFNMFLMVLLVCQTSAGLYRSRFHYLFVQKVQREQSNYPFKLLKYRIRRGVSVDSQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="107651" e_stop="107883"/>
            <exon e_start="109348" e_stop="109506"/>
            <exon e_start="109597" e_stop="109749"/>
            <exon e_start="109959" e_stop="110042"/>
            <exon e_start="110257" e_stop="110692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.842" acc_prob="1.000" e_score="0.991"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.936" acc_prob="0.680" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.961" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="107651" e_stop="107883" e_length="233"/>
          </exon>
          <intron i_serial="1" don_prob="0.842" acc_prob="1.000">
            <gDNA_intron_boundary i_start="107884" i_stop="109347" i_length="1464"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109348" e_stop="109506" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="109507" i_stop="109596" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="109597" e_stop="109749" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.936" acc_prob="0.680">
            <gDNA_intron_boundary i_start="109750" i_stop="109958" i_length="209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="109959" e_stop="110042" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.961">
            <gDNA_intron_boundary i_start="110043" i_stop="110256" i_length="214"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="110257" e_stop="110692" e_length="436"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107651" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107698" stop="107883"/>
              <exon start="109348" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110588"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109428" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109428" stop="109506"/>
              <exon start="109597" stop="109749"/>
              <exon start="109959" stop="110042"/>
              <exon start="110257" stop="110494"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109961" stop="110042"/>
              <exon start="110257" stop="110677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734128" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110032" stop="110042"/>
              <exon start="110257" stop="110692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110294" stop="110543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110357" stop="110687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227252" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGATATTGGAGGATGTGACATTCAAAAGCAGGAAATTCGTGAGGCTGTTGAGTTACCTTTGACTCATCATGAGTTGTACAAGCAGATTGGTATAGACCCTCCCCGTGGTGTCTTGCTTTATGGTCCACCAGGTACTGGGAAAACTATGCTTGCAAAGGCTGTTGCTCATCACACTACTGCTGCCTTCATAAGGGTGGTTGGCTCAGAATTTGTTCAGAAGTACTTGGGTGAG : GGTCCACGAATGGTTCGTGATGTGTTCCGTCTTGCCAAAGAAAATGCTCCTGCCATTATATTTATTGATGAGGTAGATGCAATTGCCACTGCGAGGTTTGATGCTCAAACTGGAGCTGATAGGGAGGTCCAGCGTATCTTGATGGAGTTGCTTAATCAG : ATGGACGGATTTGACCAGACAGTGAATGTGAAAGTTATCATGGCAACTAACAGAGCTGATACTTTGGACCCTGCACTTCTGCGTCCTGGAAGGCTTGATCGGAAGATTGAATTTCCTTTGCCTGATAGGCGTCAAAAGAGGCTTGTTTTTCAG : GTCTGTACTGCTAAGATGAACCTAGGTGACGAGGTTGACTTGGAAGATTATGTTTCTCGCCCTGATAAAATTAGTGCTGCTGAG : ATTGCAGCTATATGTCAGGAAGCAGGTATGCATGCAGTGCGAAAGAATCGATATGTCATACTCCCCAAGGACTTTGAAAAGGGTTACAGGACCAATGTGAAGAAGCCGGACACTGACTTCGAGTTCTATAAGTGATCTGTAAAAGTAGATGAGCTAATATTTTTAGAGGTTGACCTTGTACACTCAATATGAAAATTCTTTTTAATATGTTTTTAATGGTACTGCTGGTTTGTCAAACGTCTGCTGGTTTGTACCGTTCTAGATTCCATTATTTGTTCGTTCAGAAAGTGCAGCGTGAGCAGTCTAATTATCCATTTAAGCTGCTTAAGTATCGCATTCGAAGGGGTGTGTCTGTAGACTCTCAGTCATTTTAATGCCGCATTCTGTGGGATGGCTAATCTCATATATAAGCTTTGCAGTAGTACATTTTCATTCG</gDNA_template>
            <first_frame> R  I  L  E  D  V  T  F  K  S  R  K  F  V  R  L  L  S  Y  L  *  L  I  M  S  C  T  S  R  L  V  *  T  L  P  V  V  S  C  F  M  V  H  Q  V  L  G  K  L  C  L  Q  R  L  L  L  I  T  L  L  L  P  S  *  G  W  L  A  Q  N  L  F  R  S  T  W  V  R :   V  H  E  W  F  V  M  C  S  V  L  P  K  K  M  L  L  P  L  Y  L  L  M  R  *  M  Q  L  P  L  R  G  L  M  L  K  L  E  L  I  G  R  S  S  V  S  *  W  S  C  L  I  R :   W  T  D  L  T  R  Q  *  M  *  K  L  S  W  Q  L  T  E  L  I  L  W  T  L  H  F  C  V  L  E  G  L  I  G  R  L  N  F  L  C  L  I  G  V  K  R  G  L  F  F  R :   S  V  L  L  R  *  T  *  V  T  R  L  T  W  K  I  M  F  L  A  L  I  K  L  V  L  L  R :   L  Q  L  Y  V  R  K  Q  V  C  M  Q  C  E  R  I  D  M  S  Y  S  P  R  T  L  K  R  V  T  G  P  M  *  R  S  R  T  L  T  S  S  S  I  S  D  L  *  K  *  M  S  *  Y  F  *  R  L  T  L  Y  T  Q  Y  E  N  S  F  *  Y  V  F  N  G  T  A  G  L  S  N  V  C  W  F  V  P  F  *  I  P  L  F  V  R  S  E  S  A  A  *  A  V  *  L  S  I  *  A  A  *  V  S  H  S  K  G  C  V  C  R  L  S  V  I  L  M  P  H  S  V  G  W  L  I  S  Y  I  S  F  A  V  V  H  F  H  S </first_frame>
            <second_frame>  G  Y  W  R  M  *  H  S  K  A  G  N  S  *  G  C  *  V  T  F  D  S  S  *  V  V  Q  A  D  W  Y  R  P  S  P  W  C  L  A  L  W  S  T  R  Y  W  E  N  Y  A  C  K  G  C  C  S  S  H  Y  C  C  L  H  K  G  G  W  L  R  I  C  S  E  V  L  G  *   : G  S  T  N  G  S  *  C  V  P  S  C  Q  R  K  C  S  C  H  Y  I  Y  *  *  G  R  C  N  C  H  C  E  V  *  C  S  N  W  S  *  *  G  G  P  A  Y  L  D  G  V  A  *  S   : D  G  R  I  *  P  D  S  E  C  E  S  Y  H  G  N  *  Q  S  *  Y  F  G  P  C  T  S  A  S  W  K  A  *  S  E  D  *  I  S  F  A  *  *  A  S  K  E  A  C  F  S   : G  L  Y  C  *  D  E  P  R  *  R  G  *  L  G  R  L  C  F  S  P  *  *  N  *  C  C  *   : D  C  S  Y  M  S  G  S  R  Y  A  C  S  A  K  E  S  I  C  H  T  P  Q  G  L  *  K  G  L  Q  D  Q  C  E  E  A  G  H  *  L  R  V  L  *  V  I  C  K  S  R  *  A  N  I  F  R  G  *  P  C  T  L  N  M  K  I  L  F  N  M  F  L  M  V  L  L  V  C  Q  T  S  A  G  L  Y  R  S  R  F  H  Y  L  F  V  Q  K  V  Q  R  E  Q  S  N  Y  P  F  K  L  L  K  Y  R  I  R  R  G  V  S  V  D  S  Q  S  F  *  C  R  I  L  W  D  G  *  S  H  I  *  A  L  Q  *  Y  I  F  I   </second_frame>
            <third_frame>   D  I  G  G  C  D  I  Q  K  Q  E  I  R  E  A  V  E  L  P  L  T  H  H  E  L  Y  K  Q  I  G  I  D  P  P  R  G  V  L  L  Y  G  P  P  G  T  G  K  T  M  L  A  K  A  V  A  H  H  T  T  A  A  F  I  R  V  V  G  S  E  F  V  Q  K  Y  L  G  E  :  G  P  R  M  V  R  D  V  F  R  L  A  K  E  N  A  P  A  I  I  F  I  D  E  V  D  A  I  A  T  A  R  F  D  A  Q  T  G  A  D  R  E  V  Q  R  I  L  M  E  L  L  N  Q  :  M  D  G  F  D  Q  T  V  N  V  K  V  I  M  A  T  N  R  A  D  T  L  D  P  A  L  L  R  P  G  R  L  D  R  K  I  E  F  P  L  P  D  R  R  Q  K  R  L  V  F  Q  :  V  C  T  A  K  M  N  L  G  D  E  V  D  L  E  D  Y  V  S  R  P  D  K  I  S  A  A  E  :  I  A  A  I  C  Q  E  A  G  M  H  A  V  R  K  N  R  Y  V  I  L  P  K  D  F  E  K  G  Y  R  T  N  V  K  K  P  D  T  D  F  E  F  Y  K  *  S  V  K  V  D  E  L  I  F  L  E  V  D  L  V  H  S  I  *  K  F  F  L  I  C  F  *  W  Y  C  W  F  V  K  R  L  L  V  C  T  V  L  D  S  I  I  C  S  F  R  K  C  S  V  S  S  L  I  I  H  L  S  C  L  S  I  A  F  E  G  V  C  L  *  T  L  S  H  F  N  A  A  F  C  G  M  A  N  L  I  Y  K  L  C  S  S  T  F  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107653" stop="107883"/>
                    <exon start="109348" stop="109506"/>
                    <exon start="109597" stop="109749"/>
                    <exon start="109959" stop="110042"/>
                    <exon start="110257" stop="110391"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKKPDTDFEFYK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110430" stop="110630"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCTLNMKILFNMFLMVLLVCQTSAGLYRSRFHYLFVQKVQREQSNYPFKLLKYRIRRGVSVDSQSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="113873" PGL_stop="111447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113873" e_stop="113811"/>
            <exon e_start="112881" e_stop="112380"/>
            <exon e_start="111968" e_stop="111887"/>
            <exon e_start="111788" e_stop="111447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113873" e_stop="113811" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112881" e_stop="112380" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111968" e_stop="111887" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="111788" e_stop="111447" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113873" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113870" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719122" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113867" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327785" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113865" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E692972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113862" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113859" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706180" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113859" stop="113811"/>
              <exon start="112881" stop="112633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390782" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343839" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259905" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113855" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113855" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113854" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261904" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113854" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113850" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113849" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113846" stop="113811"/>
              <exon start="112881" stop="112507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113842" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111925"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113842" stop="113811"/>
              <exon start="112881" stop="112539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113840" stop="113811"/>
              <exon start="112881" stop="112402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113840" stop="113811"/>
              <exon start="112881" stop="112418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113837" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113837" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320953" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113837" stop="113811"/>
              <exon start="112881" stop="112452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113836" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113836" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113834" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113834" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312214" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113834" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113834" stop="113811"/>
              <exon start="112881" stop="112417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321169" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112875" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712576" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112859" stop="112498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112849" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112839" stop="112380"/>
              <exon start="111968" stop="111887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112839" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112812" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112811" stop="112380"/>
              <exon start="111968" stop="111920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209178" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112807" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112772" stop="112380"/>
              <exon start="111968" stop="111928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718108" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112733" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E696812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112720" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112713" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354322" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112713" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112713" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112680" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112644" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112642" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112640" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111481"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112640" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112640" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112640" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112626" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390544" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112581" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232112" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112540" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112529" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112512" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112512" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112512" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112511" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352586" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112508" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350551" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112456" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112451" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232104" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112431" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111761" stop="111573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111722" stop="111447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111722" stop="111447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGACAATTGTTAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG : GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG : CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTATAACTGGAAACA</gDNA_template>
            <first_frame> *  T  I  V  K  P  Q  I  N  C  S  D  A  P  I  E  *  L  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  T  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  *  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  L  K  R  L  S  A  V  P  N  S  S  F  L  D  V  K  R  S  L  *  A  E  S   : G  D  S  P  S  S  A  E  L  I  I  *  N  T  S  Q  R  T  V  F  Y  Q  M  V  *  M  Q  S :   F  L  A  T  M  V  D  L  L  H  V  N  L  E  G  P  S  L  H  L  L  R  K  L  K  C  H  N  L  L  R  N  S  T  F  S  F  L  V  C  *  M  E  L  C  Y  L  N  F  C  L  C  M  N  L  I  S  I  Q  L  N  N  F  E  I  I  M  F  C  I  *  N  F  L  Y  D  *  E  L  V  C  F  D  E  L  I  H  S  D  R  L  *  *  H  S  L  V  P  P  A  T  N  Y  F  R  V  F  G  *  Y  N  W  K   </first_frame>
            <second_frame>  R  Q  L  L  S  R  R  S  I  A  V  T  P  Q  L  N  S  Y  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  R  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  E  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  S  R  G  S  P  P  C  Q  I  Q  V  S  W  T  S  K  D  H  C  E  Q  K  V  :  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  T  R  W  C  E  C  K   : A  S  W  Q  P  W  S  T  C  C  T  S  T  W  K  G  L  P  Y  I  C  L  G  N  *  S  V  I  I  F  S  E  I  A  H  L  V  F  *  S  V  E  W  N  F  V  T  *  I  S  V  F  A  *  T  *  S  V  S  N  *  T  I  L  K  L  *  C  S  V  F  E  I  S  C  M  I  K  S  S  Y  V  L  M  N  *  Y  I  V  T  G  C  N  N  I  L  *  Y  P  L  Q  L  I  I  S  E  Y  L  A  S  I  T  G  N  </second_frame>
            <third_frame>   D  N  C  *  A  A  D  Q  L  Q  *  R  P  N  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  K  F  S  R  T  D  Y  L  K  Y  K  S  E  N  R  I  L  P  D  G  V  N  A  K  :  L  L  G  N  H  G  R  L  A  A  R  Q  P  G  R  A  F  L  T  S  A  *  E  I  E  V  S  *  S  S  Q  K  *  H  I  *  F  S  S  L  L  N  G  T  L  L  L  E  F  L  S  L  H  E  L  D  Q  Y  P  I  E  Q  F  *  N  Y  N  V  L  Y  L  K  F  L  V  *  L  R  A  R  M  F  *  *  I  D  T  *  *  Q  V  V  I  T  F  F  S  T  P  C  N  *  L  F  P  S  I  W  L  V  *  L  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113826" stop="113811"/>
                    <exon start="112881" stop="112380"/>
                    <exon start="111968" stop="111887"/>
                    <exon start="111788" stop="111723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRILPDGVNAKLLGNHGRLAARQPGRAFLTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="113862" e_stop="113811"/>
            <exon e_start="112881" e_stop="112380"/>
            <exon e_start="111968" e_stop="111957"/>
            <exon e_start="111788" e_stop="111782"/>
            <exon e_start="111617" e_stop="111501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.000" e_score="0.571"/>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113862" e_stop="113811" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112881" e_stop="112380" e_length="502"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111968" e_stop="111957" e_length="12"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111956" i_stop="111789" i_length="168"/>
          </intron>
          <exon e_serial="4" e_score="0.571">
            <gDNA_exon_boundary e_start="111788" e_stop="111782" e_length="7"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.000">
            <gDNA_intron_boundary i_start="111781" i_stop="111618" i_length="164"/>
          </intron>
          <exon e_serial="5" e_score="0.940">
            <gDNA_exon_boundary e_start="111617" e_stop="111501" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113862" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113859" stop="113811"/>
              <exon start="112881" stop="112633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113857" stop="113811"/>
              <exon start="112881" stop="112527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306592" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
              <exon start="111968" stop="111957"/>
              <exon start="111788" stop="111782"/>
              <exon start="111617" stop="111501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254135" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113856" stop="113811"/>
              <exon start="112881" stop="112598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113854" stop="113811"/>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113846" stop="113811"/>
              <exon start="112881" stop="112507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113842" stop="113811"/>
              <exon start="112881" stop="112539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113840" stop="113811"/>
              <exon start="112881" stop="112402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113840" stop="113811"/>
              <exon start="112881" stop="112418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113837" stop="113811"/>
              <exon start="112881" stop="112452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113834" stop="113811"/>
              <exon start="112881" stop="112417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339715" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112859" stop="112498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112849" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112839" stop="112380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242750" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGGGTCAGGGTTCATCCATTCCATGTTTTGAGAATTAACAAGATGTTGTCGTGTGCTGGAGCTGATAGACTCCAAACTGGTATGAGGGGAGCTTTTGGTAAGCCCCAGGGTGTTTGTGCTCGTGTTGCAATTGGTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG : GGGATTCACCAA : CTTCTTG : TATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTT</gDNA_template>
            <first_frame> *  A  A  D  Q  L  Q  *  R  P  N  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  V  R  V  H  P  F  H  V  L  R  I  N  K  M  L  S  C  A  G  A  D  R  L  Q  T  G  M  R  G  A  F  G  K  P  Q  G  V  C  A  R  V  A  I  G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  N :   F  L  :  Y  P  I  E  Q  F  *  N  Y  N  V  L  Y  L  K  F  L  V  *  L  R  A  R  M  F  *  *  I  D  T  *  *  Q  V  V  I  T  F  F </first_frame>
            <second_frame>  K  P  Q  I  N  C  S  D  A  P  I  E  *  L  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  T  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G  S  G  F  I  H  S  M  F  *  E  L  T  R  C  C  R  V  L  E  L  I  D  S  K  L  V  *  G  E  L  L  V  S  P  R  V  F  V  L  V  L  Q  L  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  L  K  R  L  S  A  V  P  N  S  S  F  L  D  V  K  R  S  L  *  A  E  S   : G  D  S  P   : T  S  C :   I  Q  L  N  N  F  E  I  I  M  F  C  I  *  N  F  L  Y  D  *  E  L  V  C  F  D  E  L  I  H  S  D  R  L  *  *  H  S   </second_frame>
            <third_frame>   S  R  R  S  I  A  V  T  P  Q  L  N  S  Y  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  R  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K  G  Q  G  S  S  I  P  C  F  E  N  *  Q  D  V  V  V  C  W  S  *  *  T  P  N  W  Y  E  G  S  F  W  *  A  P  G  C  L  C  S  C  C  N  W  S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  S  R  G  S  P  P  C  Q  I  Q  V  S  W  T  S  K  D  H  C  E  Q  K  V  :  G  I  H  Q  :  L  L   : V  S  N  *  T  I  L  K  L  *  C  S  V  F  E  I  S  C  M  I  K  S  S  Y  V  L  M  N  *  Y  I  V  T  G  C  N  N  I  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113826" stop="113811"/>
                    <exon start="112881" stop="112380"/>
                    <exon start="111968" stop="111957"/>
                    <exon start="111788" stop="111782"/>
                    <exon start="111617" stop="111597"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTNFLYPIEQF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="113859" e_stop="113811"/>
            <exon e_start="112881" e_stop="112628"/>
            <exon e_start="112497" e_stop="112380"/>
            <exon e_start="111968" e_stop="111887"/>
            <exon e_start="111788" e_stop="111447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.905"/>
          <exon-intron don_prob="0.429" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="113859" e_stop="113811" e_length="49"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="113810" i_stop="112882" i_length="929"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112881" e_stop="112628" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.429" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112627" i_stop="112498" i_length="130"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="112497" e_stop="112380" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.971">
            <gDNA_intron_boundary i_start="112379" i_stop="111969" i_length="411"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111968" e_stop="111887" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="111886" i_stop="111789" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="111788" e_stop="111447" e_length="342"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113859" stop="113811"/>
              <exon start="112881" stop="112633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280829" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113852" stop="113811"/>
              <exon start="112881" stop="112714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280752" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112881" stop="112628"/>
              <exon start="112497" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112456" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112451" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232104" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112431" stop="112380"/>
              <exon start="111968" stop="111887"/>
              <exon start="111788" stop="111593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111761" stop="111573"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220137" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111722" stop="111447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111722" stop="111447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356351" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGCAGATCAATTGCAGTGACGCCCCAATTGAATAGCTATGGGGAGAA : GACCTGCAAGATGTTATCGTCAGATTAAGAACAAGCCTTACCCAAAATCAAGGTTTTGCCGTGGTGTCCCTGATCCAAAGATCAGGATTTATGACGTGGGCATGAAGAAAAAGGGAGTTGATGAGTTCCCTTTCTGTGTGCATTTGGTCAGTTGGGAGAAGGAGAATGTCTCAAGTGAGGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGACCAAGTCTGCCGGGAAAGATGCTTTTCACCTAAGG : GTCAGGTTCTTCTATCTGTTCGCTGCAAAGATGGAAACAGTAACCATGCTCAAGAGGCTCTCCGCCGTGCCAAATTCAAGTTTCCTGGACGTCAAAAGATCATTGTGAGCAGAAAGTG : GGGATTCACCAAGTTCAGCCGAACTGATTATCTGAAATACAAGTCAGAGAACCGTATTCTACCAGATGGTGTGAATGCAAAG : CTTCTTGGCAACCATGGTCGACTTGCTGCACGTCAACCTGGAAGGGCCTTCCTTACATCTGCTTAGGAAATTGAAGTGTCATAATCTTCTCAGAAATAGCACATTTAGTTTTCTAGTCTGTTGAATGGAACTTTGTTACTTGAATTTCTGTCTTTGCATGAACTTGATCAGTATCCAATTGAACAATTTTGAAATTATAATGTTCTGTATTTGAAATTTCTTGTATGATTAAGAGCTCGTATGTTTTGATGAATTGATACATAGTGACAGGTTGTAATAACATTCTTTAGTACCCCCTGCAACTAATTATTTCCGAGTATTTGGCTAGTATAACTGGAAACA</gDNA_template>
            <first_frame> A  A  D  Q  L  Q  *  R  P  N  *  I  A  M  G  R   : R  P  A  R  C  Y  R  Q  I  K  N  K  P  Y  P  K  S  R  F  C  R  G  V  P  D  P  K  I  R  I  Y  D  V  G  M  K  K  K  G  V  D  E  F  P  F  C  V  H  L  V  S  W  E  K  E  N  V  S  S  E  A  L  E  A  A  R  I  A  C  N  K  Y  M  T  K  S  A  G  K  D  A  F  H  L  R  :  V  R  F  F  Y  L  F  A  A  K  M  E  T  V  T  M  L  K  R  L  S  A  V  P  N  S  S  F  L  D  V  K  R  S  L  *  A  E  S   : G  D  S  P  S  S  A  E  L  I  I  *  N  T  S  Q  R  T  V  F  Y  Q  M  V  *  M  Q  S :   F  L  A  T  M  V  D  L  L  H  V  N  L  E  G  P  S  L  H  L  L  R  K  L  K  C  H  N  L  L  R  N  S  T  F  S  F  L  V  C  *  M  E  L  C  Y  L  N  F  C  L  C  M  N  L  I  S  I  Q  L  N  N  F  E  I  I  M  F  C  I  *  N  F  L  Y  D  *  E  L  V  C  F  D  E  L  I  H  S  D  R  L  *  *  H  S  L  V  P  P  A  T  N  Y  F  R  V  F  G  *  Y  N  W  K   </first_frame>
            <second_frame>  P  Q  I  N  C  S  D  A  P  I  E  *  L  W  G  E  :  D  L  Q  D  V  I  V  R  L  R  T  S  L  T  Q  N  Q  G  F  A  V  V  S  L  I  Q  R  S  G  F  M  T  W  A  *  R  K  R  E  L  M  S  S  L  S  V  C  I  W  S  V  G  R  R  R  M  S  Q  V  R  H  L  K  L  P  V  L  L  A  T  S  T  *  P  S  L  P  G  K  M  L  F  T  *  G :   S  G  S  S  I  C  S  L  Q  R  W  K  Q  *  P  C  S  R  G  S  P  P  C  Q  I  Q  V  S  W  T  S  K  D  H  C  E  Q  K  V  :  G  I  H  Q  V  Q  P  N  *  L  S  E  I  Q  V  R  E  P  Y  S  T  R  W  C  E  C  K   : A  S  W  Q  P  W  S  T  C  C  T  S  T  W  K  G  L  P  Y  I  C  L  G  N  *  S  V  I  I  F  S  E  I  A  H  L  V  F  *  S  V  E  W  N  F  V  T  *  I  S  V  F  A  *  T  *  S  V  S  N  *  T  I  L  K  L  *  C  S  V  F  E  I  S  C  M  I  K  S  S  Y  V  L  M  N  *  Y  I  V  T  G  C  N  N  I  L  *  Y  P  L  Q  L  I  I  S  E  Y  L  A  S  I  T  G  N  </second_frame>
            <third_frame>   R  R  S  I  A  V  T  P  Q  L  N  S  Y  G  E  K :   T  C  K  M  L  S  S  D  *  E  Q  A  L  P  K  I  K  V  L  P  W  C  P  *  S  K  D  Q  D  L  *  R  G  H  E  E  K  G  S  *  *  V  P  F  L  C  A  F  G  Q  L  G  E  G  E  C  L  K  *  G  T  *  S  C  P  Y  C  L  Q  Q  V  H  D  Q  V  C  R  E  R  C  F  S  P  K   : G  Q  V  L  L  S  V  R  C  K  D  G  N  S  N  H  A  Q  E  A  L  R  R  A  K  F  K  F  P  G  R  Q  K  I  I  V  S  R  K  W :   G  F  T  K  F  S  R  T  D  Y  L  K  Y  K  S  E  N  R  I  L  P  D  G  V  N  A  K  :  L  L  G  N  H  G  R  L  A  A  R  Q  P  G  R  A  F  L  T  S  A  *  E  I  E  V  S  *  S  S  Q  K  *  H  I  *  F  S  S  L  L  N  G  T  L  L  L  E  F  L  S  L  H  E  L  D  Q  Y  P  I  E  Q  F  *  N  Y  N  V  L  Y  L  K  F  L  V  *  L  R  A  R  M  F  *  *  I  D  T  *  *  Q  V  V  I  T  F  F  S  T  P  C  N  *  L  F  P  S  I  W  L  V  *  L  E  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113826" stop="113811"/>
                    <exon start="112881" stop="112628"/>
                    <exon start="112497" stop="112390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRFFYLFAAKMETVTMLKRLSAVPNSSFLDVKRSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0014B21.1" strand="-"/>
                <serials PGL_serial="23" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112694" stop="112628"/>
                    <exon start="112497" stop="112380"/>
                    <exon start="111968" stop="111887"/>
                    <exon start="111788" stop="111723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCPYCLQQVHDQVCRERCFSPKGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRILPDGVNAKLLGNHGRLAARQPGRAFLTSA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 1262 chains have been computed
$ 
$ memory statistics:
$ 4206488 bytes spliced alignments in total
$ 641 spliced alignments have been stored
$ 6562 bytes was the average size of a spliced alignment
$ 54800 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 2382 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 1441 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 21:01:08
-->
