<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:25:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E307917" ref_strand="+" ref_description="SGN-E307917 [cLEY-20-L7]">
      <seq>ctcgtgcctgaaatttaaactctgacaaagaagaagatgaaatttagggcgtctcagagaattccttgcttcacttacaatggacgcttcagtcatctacatgcgcagcgtttccatttcactacctttcttcgtaaggtacaagccactgaagctcgagcttcgcttaatcgtggcggcagtagtagtaacagcagctctcagggtaacactcttttgttgcctggtgcaacagtcgcaactatagttatgcttggtcttctccatgctcgacgtctctatgatgatcagaagattgaagacgcaagagagaaaggaattttagaattccagcctgatgtaaaggctactttcatgagattacttcctctacgctccatctctagattctggggtaccttgaccaatgtggaactcccgatgtggctgcgcccttctgtgtataaaggatgggctagagcatttcattcaaacttggaagaagtagcactgcctttggaagaatatgcatctttacgggagttctttgtcagaagattgaaagagggtacccgacctattgatccggatccctgttgtctgattagtccagttgatggaactgttctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2050" stop="6534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2343" g_stop="2547" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2548" i_stop="5242" i_length="2695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5243" g_stop="5331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="294" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5332" i_stop="5483" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5484" g_stop="5534" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="345" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5535" i_stop="5642" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5643" g_stop="5708" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="411" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5777" i_length="69">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5778" g_stop="5838" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="472" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5839" i_stop="5992" i_length="154">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5993" g_stop="6102" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="582" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6207" g_stop="6234" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="610" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E307917" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2343" e_stop="2547"/>
          <exon e_start="5243" e_stop="5331"/>
          <exon e_start="5484" e_stop="5534"/>
          <exon e_start="5643" e_stop="5708"/>
          <exon e_start="5778" e_stop="5838"/>
          <exon e_start="5993" e_stop="6102"/>
          <exon e_start="6207" e_stop="6234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTCAGAAATTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGGGTACAACTCTGTTTTTTACTTCTCTGCTTGAAAAAAATTGTATATGGAACTTCAGTTGAGTTGCATTTTAGTTCAGAATCATTTATACTGTTAATGGTGAGAACATAGTGCAATATATTTTGTTACAACTAATAATACTTCTCATTCGGAATATCTAAGTTCTCATTCTATAGGTAAATTTCTGGCTGATTTATTAAGTTGTATCTGGTGGAACAGTGAAGGTGCGTCCAAGCTTGCTTAGATACCACCACCAACAACAAATGATGTGTGATGTCATACGTGGGATATGAGGAGGGTAGAGTGTACACAAACAATAGTGAGGTTTTTTCCAATTGACTCAGACTCAAAGAGCTATAAAGGTAGTAGCAACAAGTAGAAACATCAAGAAGATAATAATATAATCAAGGCTTAAGGAACAACATGTACTAATAGAAATGTGAAAATAATGAAAAAGAAAAATAATACTAATACATAGAGAAGGAAAAGAAATCTGTCCGATTATCTACTAACCTCTACCCTAATTTTCAACCTCCTTGCCTTCCTATCGAGGGGAATATCTTCGGTGAGCTAAAGTTGTGTCGCATCATGCTTAATTACCTCACAACAATACTTATTTGACCTATCTCTACCCCTCCTCAAGTCCACAACGACCAACCTCTCTTACCTTCTTACAGGGGCATATGCACATCTCGTCTTCAGATGTTCAAACCATCTCAACCTCACTTTTTGTATCTTGTTCTCCGAGGTCATTTGCACCTTGACCCGAATATCTTCATTTCTAATCATTGTCTTTCTATATATACTCACACATCCTCCTCAACATTCTCATCTCTGTCACTCTCATCTCTGGACATGAGAATTTATGATCAGCCAATACTCCATCATATATAACATAGTCGGTCTAACCACTACCCTATAGAACTTACCTTTATGTGTAGGTAGTACATTCTTATCTCACCAAACACCAGATGTGAGCCTCTATTTAATCTACCTCACCCCAATACAATGTGTGACACCTTGTCAATCTCCATATTACCTTACACTACAAGTATTAAGTTTTTGGTCCTGTTCAACTTGAAACCTTTTGACCCAAGGTTTGTCACCAAACCTCAAGGCTTACTGTTCATGAGGATGGCAAGATAGATAAATTGGTAAGACCAAAAATTAAGATAAGATGGTTGAGATGGAGGAGCACTATGAGATTCTATGTTATACCATAGTATCTACCAAAGTGAAAAGCAAAATTTTAGAGAACAGTTGTATGATCAACAATGTTAAAGAGGATACACATTATTTGTTTTTATTAGAACTTTTACTTATATGAAGAAAAGATGGCTTGGACAATAAGTGCTTGTTTAAGAATGAACAACAAGAGACTTGGGCGTGGGCGTGTGGCCTAGTGATCAATAAAGTGGTTGATAATCCTAAGGTCTATGGTTCAAAACTCAATGGAGACAAAAAACACTAGGAGTCTTCCTATTTGTCCTAACCTTGGTGGATAGAGTTAATCGATACCTGTTGCTGGTGAGAGGTGCCAGGTATCACGTGGAATCAGTCAAGGTGTGCAAAAGTTGGCCCGACAACACGGTCATAAAAAAAAAGAACGAGCAGCAGGTGTGATAGACTAATTGTTCCATACTTGTGCTCTTGATTTTAAACTTATACTACTAAGAATTGTTGTGTGTCAACTAGTAGAATTATGTTTATCATTTGAGTACGCTTCTTGGTCAAAGTTAACATTCAAAGTTGGAAACTAGATTCTAATGGAAGGTCAATACTCCTAAAATACTCAGGTGAATATTCTATTTGGATTCAGGAGAAATTTTACCAACGTGAAGTGTTGTGTTAAATAAACTCAATGGATTGGAATGAAGTTGATATAAAATATTGTCTTGTGGCTTAACCATATTGGTATATGAATTAGCACATAAATAAAACAGAGCACAACGACTGATGTGGCAAATTCCAAACTAACTCTAGTGAAAGTGGAATTGATAGCTGGAGTGAGCTGCACCTTCTTTGCTTTTCCTTTCTTCTTTTTGTAGTTTTTTGTTTATTAATGGGCTTATATATAAAGCTTGTGTCTTGTGAAAATAGGTCTTAGGACTAACTCACACCCCAAAAGCTAGCTCAAAGGGACGAGGATTGCCAAGCCTTATAAGGAGTTCATCCATCTCATTAACCATCGATGTGGACTTTTGTCATTCTTTAACATCTCACCTCACGCCCAGTGCTTGATTTTTGTCATTCTTTAACACCCATTCTCACGCTCAGTGCTAGCATCTGGTGCGTGGACAATTTTGATTTTGGGGATCTGAACATTGGGTGAGAAGGGCCCTGCTCTGATGCCATGTGAAAATAGGTCTTAGGCCTAACTCACACCGCAAAAGCTAGCTCAAAGGGAGGAGAATTGCCGAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCGATGTGGGACTATTGTCATTCTTTAACATGTCTGATGGTGATTTTCGTGATTATATTTTACATGTCCAAAACAGCTATTGTTAACTGCTGAAAATTCAGTTTGGTTCTTGGTTCCTTGCATTTTTAGAACTATGTATAATACTCAATATTACTTGATAGTGCTTAATCGTGTTACTTATTCACCTGCTACAATATTATCATTTGGCACAGCAGCTGAAATTTGACGGCTCTGGTTTATGCAGGTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAGGTATTTTTCTAACTCATAAACCTAGTGAAATAGGTGAACTATATTGGGGCTCTCTTTCGGTTTCTGTGAAATCAGATGACATTGAAAAAGATGAAATCAGATTAAGATATGTTCTCTCCCATGGAGCGGTCCTAACTCTCTTTGAGTCGCAGATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAGGTAAGAATTCACTTCTTTCCTATGCTATTGATCTTTTAGCTTACCACATTATTCTATGTAGTTTTCCATGTTGAACTTACTGGAAATAATTTGCCTTCTCAATTGTAGGCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTGGTAAGTCTCTATCAATTTTAAATAACAGAAGATTCAGCAAAAACTTGACTCCATGCTCTGTTCGTCCAGGAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAAGTAAACAGTCTTTCTAGTTTCTACTTCGTGATGCTTTGAGTGTTCTTCTTACATCTTGATGCTTTAGATATTTGTAGTTCTTCTGTGACACAGTGCAAATAAAACTAAACTTTTGGCGATGCCAATATTTATAAAACTCGGTTTTTGAATCCAGACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTGGTAACTGGTAACCAGCTCCTAGTTATCTGCTGATTCTCTTGATGTTTCAAAATATTGCAGATTATCAAATTTGCTGATCTTTCTGAGTTGGTATGTGGTTGTAGATTAGTCCAGTTGATGGAACTGTTCTAC</genome_strand>
        <mrna_strand>CTCGTGCCTGAAATTTAAACTCTGACAAAGAAGAAGATGAAATTTAGGGCGTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAG........................................................................................................................................................ATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAG............................................................................................................GCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTG.....................................................................GAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAA..........................................................................................................................................................ACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTG........................................................................................................ATTAGTCCAGTTGATGGAACTGTTCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746997" ref_strand="+" ref_description="SGN-E746997 [GI|29465779]">
      <seq>ggcacgaggcctcgtgccggaaatttaaaccctgacaaagaagaagatgaaatttagggcttctcagagaattccttgcttcacttacaatggacgcttcagtcatctacatgcgcagcgtttccatttcactacctttcttcgtaaggtacaagccactgaagctcgagcttcgcttaatcgtggcggcagtagtagtaacagcagctctcagggtaacactcttttgttgcctggtgcaacagtcgcaactatagttatgcttggtcttctccatgctcgacgtctctatgatgatcagaagattgaagacgcaagagagaaaggaattttagaattccagcctgatgtaaaggctactttcatgagattacttcctctacgctccatctctagattctggggtaccttgaccaatgtggaactcccgatgtggctgcgcccttctgtgtataaaggatgggctagagcatttcattcaaacttggaagaagtagcactgcctttggaagaatatgcatctttacgggagttctttgtcagaagattgaaagagggtacccgacctattgatccggatccctgttgtctgattagtccagttgatggaactgttctacaattcggagagttgaaagaagttggggctatgattgagcaagtcaaaggattttcttattctgtttcttcgcttcttggtgccagctccctccttcccatgaatgtggttgatgacaacacaaatcaagatggtgggcaagaaggttctatggatgatacgaatcagaagtcctggtggagagtttcattggcttctcctaaagttcgagatcctgcaccagcacgcccaatgaaaggtctcttttactgtgtgatttacttgagtcctggagattatcatcgcatacactcaccagctgattggaatgttcttggccgtcgacatttctctggtcgtctctttcccatgaatgaacgagctacgaggacaataagaaatttatatgtggagaatgaaagggttgtgcttgaaggtaaatggcaagaaggttttatggcaatggcagccgtaggtgcaacgaatattggttccattgagcttttcattgaaccaaccctgcgaacaaatagaccatggaagaagctgctacatccagaacctcctgaagaacaggtatacgaacctagaggcactggtgttttgctgaagaaaggagatgagctagcagctttcaatatgggttcaacagtggttctagtcttccaagctccgatctcacaaccttctgcagataaaagcacatcagcggaattcagtttttgtattaaaaagagagaccgtgtccgcatgggagaggccctgggcaggtggcatgattcctagttacaatatttgaattacaaaattaagggtggcaagtttgtattatagaaaagccttctagggaaacacttcacagttattactttttaggtagattgagtctgaaatggtcttcattctgttacaatagtatgaggcaacaccattttaagggtcgtatgaatgagaacacaggttttcttttgctcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2050" stop="11995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2353" g_stop="2547" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="215" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2548" i_stop="5242" i_length="2695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5243" g_stop="5331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="304" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5332" i_stop="5483" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5484" g_stop="5534" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="355" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5535" i_stop="5642" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5643" g_stop="5708" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="421" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5777" i_length="69">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5778" g_stop="5838" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="482" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5839" i_stop="5992" i_length="154">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5993" g_stop="6102" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="592" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6207" g_stop="6460" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="846" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="6461" i_stop="7017" i_length="557">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="7018" g_stop="7124" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="953" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="7125" i_stop="7792" i_length="668">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="7793" g_stop="7860" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="954" r_stop="1021" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="7861" i_stop="9183" i_length="1323">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="9184" g_stop="9261" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1022" r_stop="1099" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="10043" g_stop="10165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1100" r_stop="1222" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="11336" g_stop="11690" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="1223" r_stop="1577" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1578" polyA_stop="1610"/>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E746997" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1557</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E746997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2353" e_stop="2547"/>
          <exon e_start="5243" e_stop="5331"/>
          <exon e_start="5484" e_stop="5534"/>
          <exon e_start="5643" e_stop="5708"/>
          <exon e_start="5778" e_stop="5838"/>
          <exon e_start="5993" e_stop="6102"/>
          <exon e_start="6207" e_stop="6460"/>
          <exon e_start="7018" e_stop="7124"/>
          <exon e_start="7793" e_stop="7860"/>
          <exon e_start="9184" e_stop="9261"/>
          <exon e_start="10043" e_stop="10165"/>
          <exon e_start="11336" e_stop="11690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGGGTACAACTCTGTTTTTTACTTCTCTGCTTGAAAAAAATTGTATATGGAACTTCAGTTGAGTTGCATTTTAGTTCAGAATCATTTATACTGTTAATGGTGAGAACATAGTGCAATATATTTTGTTACAACTAATAATACTTCTCATTCGGAATATCTAAGTTCTCATTCTATAGGTAAATTTCTGGCTGATTTATTAAGTTGTATCTGGTGGAACAGTGAAGGTGCGTCCAAGCTTGCTTAGATACCACCACCAACAACAAATGATGTGTGATGTCATACGTGGGATATGAGGAGGGTAGAGTGTACACAAACAATAGTGAGGTTTTTTCCAATTGACTCAGACTCAAAGAGCTATAAAGGTAGTAGCAACAAGTAGAAACATCAAGAAGATAATAATATAATCAAGGCTTAAGGAACAACATGTACTAATAGAAATGTGAAAATAATGAAAAAGAAAAATAATACTAATACATAGAGAAGGAAAAGAAATCTGTCCGATTATCTACTAACCTCTACCCTAATTTTCAACCTCCTTGCCTTCCTATCGAGGGGAATATCTTCGGTGAGCTAAAGTTGTGTCGCATCATGCTTAATTACCTCACAACAATACTTATTTGACCTATCTCTACCCCTCCTCAAGTCCACAACGACCAACCTCTCTTACCTTCTTACAGGGGCATATGCACATCTCGTCTTCAGATGTTCAAACCATCTCAACCTCACTTTTTGTATCTTGTTCTCCGAGGTCATTTGCACCTTGACCCGAATATCTTCATTTCTAATCATTGTCTTTCTATATATACTCACACATCCTCCTCAACATTCTCATCTCTGTCACTCTCATCTCTGGACATGAGAATTTATGATCAGCCAATACTCCATCATATATAACATAGTCGGTCTAACCACTACCCTATAGAACTTACCTTTATGTGTAGGTAGTACATTCTTATCTCACCAAACACCAGATGTGAGCCTCTATTTAATCTACCTCACCCCAATACAATGTGTGACACCTTGTCAATCTCCATATTACCTTACACTACAAGTATTAAGTTTTTGGTCCTGTTCAACTTGAAACCTTTTGACCCAAGGTTTGTCACCAAACCTCAAGGCTTACTGTTCATGAGGATGGCAAGATAGATAAATTGGTAAGACCAAAAATTAAGATAAGATGGTTGAGATGGAGGAGCACTATGAGATTCTATGTTATACCATAGTATCTACCAAAGTGAAAAGCAAAATTTTAGAGAACAGTTGTATGATCAACAATGTTAAAGAGGATACACATTATTTGTTTTTATTAGAACTTTTACTTATATGAAGAAAAGATGGCTTGGACAATAAGTGCTTGTTTAAGAATGAACAACAAGAGACTTGGGCGTGGGCGTGTGGCCTAGTGATCAATAAAGTGGTTGATAATCCTAAGGTCTATGGTTCAAAACTCAATGGAGACAAAAAACACTAGGAGTCTTCCTATTTGTCCTAACCTTGGTGGATAGAGTTAATCGATACCTGTTGCTGGTGAGAGGTGCCAGGTATCACGTGGAATCAGTCAAGGTGTGCAAAAGTTGGCCCGACAACACGGTCATAAAAAAAAAGAACGAGCAGCAGGTGTGATAGACTAATTGTTCCATACTTGTGCTCTTGATTTTAAACTTATACTACTAAGAATTGTTGTGTGTCAACTAGTAGAATTATGTTTATCATTTGAGTACGCTTCTTGGTCAAAGTTAACATTCAAAGTTGGAAACTAGATTCTAATGGAAGGTCAATACTCCTAAAATACTCAGGTGAATATTCTATTTGGATTCAGGAGAAATTTTACCAACGTGAAGTGTTGTGTTAAATAAACTCAATGGATTGGAATGAAGTTGATATAAAATATTGTCTTGTGGCTTAACCATATTGGTATATGAATTAGCACATAAATAAAACAGAGCACAACGACTGATGTGGCAAATTCCAAACTAACTCTAGTGAAAGTGGAATTGATAGCTGGAGTGAGCTGCACCTTCTTTGCTTTTCCTTTCTTCTTTTTGTAGTTTTTTGTTTATTAATGGGCTTATATATAAAGCTTGTGTCTTGTGAAAATAGGTCTTAGGACTAACTCACACCCCAAAAGCTAGCTCAAAGGGACGAGGATTGCCAAGCCTTATAAGGAGTTCATCCATCTCATTAACCATCGATGTGGACTTTTGTCATTCTTTAACATCTCACCTCACGCCCAGTGCTTGATTTTTGTCATTCTTTAACACCCATTCTCACGCTCAGTGCTAGCATCTGGTGCGTGGACAATTTTGATTTTGGGGATCTGAACATTGGGTGAGAAGGGCCCTGCTCTGATGCCATGTGAAAATAGGTCTTAGGCCTAACTCACACCGCAAAAGCTAGCTCAAAGGGAGGAGAATTGCCGAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCGATGTGGGACTATTGTCATTCTTTAACATGTCTGATGGTGATTTTCGTGATTATATTTTACATGTCCAAAACAGCTATTGTTAACTGCTGAAAATTCAGTTTGGTTCTTGGTTCCTTGCATTTTTAGAACTATGTATAATACTCAATATTACTTGATAGTGCTTAATCGTGTTACTTATTCACCTGCTACAATATTATCATTTGGCACAGCAGCTGAAATTTGACGGCTCTGGTTTATGCAGGTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAGGTATTTTTCTAACTCATAAACCTAGTGAAATAGGTGAACTATATTGGGGCTCTCTTTCGGTTTCTGTGAAATCAGATGACATTGAAAAAGATGAAATCAGATTAAGATATGTTCTCTCCCATGGAGCGGTCCTAACTCTCTTTGAGTCGCAGATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAGGTAAGAATTCACTTCTTTCCTATGCTATTGATCTTTTAGCTTACCACATTATTCTATGTAGTTTTCCATGTTGAACTTACTGGAAATAATTTGCCTTCTCAATTGTAGGCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTGGTAAGTCTCTATCAATTTTAAATAACAGAAGATTCAGCAAAAACTTGACTCCATGCTCTGTTCGTCCAGGAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAAGTAAACAGTCTTTCTAGTTTCTACTTCGTGATGCTTTGAGTGTTCTTCTTACATCTTGATGCTTTAGATATTTGTAGTTCTTCTGTGACACAGTGCAAATAAAACTAAACTTTTGGCGATGCCAATATTTATAAAACTCGGTTTTTGAATCCAGACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTGGTAACTGGTAACCAGCTCCTAGTTATCTGCTGATTCTCTTGATGTTTCAAAATATTGCAGATTATCAAATTTGCTGATCTTTCTGAGTTGGTATGTGGTTGTAGATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACGGTAACCACAGGAATGTTAACCGTGTAATATGCTGATATCTACATTGTACTATAACATATAAACGCTTCAAATGTATTATCAAAATGTCTGTTTCCACTTGTTGATGCATAGGCTATTTAGTTGATAAAATAGGCTATTTAGTATCTTTAGCTGCCATGGTACTTGTTGAACTGCTCTGGGATCCTTCTTCCATATTATTTTTTGTCTAAAAACATAACTCTTTCTTGTACTTTTTTAGAACTGTATATTTATATTCTTTAACCATTCTTGGATAACGTACTTATCCAAATATCATAATAATCTTCTAATGGAAATGAGCAGCTATAATACTAGACATATCCAACAAAAGAAAAGTGCATCTATACTACTGCACAAATTATAACCAGTATGTCTAGTTAGCAGGTGCCTAATAATTTGTAGTAGTTAGTCATCAGCTGAACCTTTATTCTTTTCTCCTTTTAGATTTTCTACTTTTTGTTCGCGTTGGATTGTAATTGCTTGATGATAAACGAGAGACTGCTACTTAAATTTTAAAACTGAAAATTAACTTATTGCAGCCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTGGTAAGTCCTTGCATTTGCATCCATAGGTTAAGAGGAGTTCATCCATCATAGTAGGCTTTCATTGTCCATGTTGTTTTCTGTTTACCTATCCCTGATCACTTCACCTAGCCCCCTCTACCCACCCTCCCCAAATGGTCAAATTACAATGATATGCAAAGGCTACACTCAGAAAGGCTCTTTTGGGGAGTATAATATGTTGATACATCAATATTTATGCTTCAACAAATGAGGGGTCAGTGACAAGTATTCTCTCTGTTTTCATGCATCTGCTAACAGTGTTTGATATGATTATGAAAAGGTATTATGTGTCTGACAACTAATATAGAGGACTTTACCATAATAACCATTGTGGTTGTATACAGTCAAGTACTTAACCCGGCTGGAAAATTTATCAAATATTATCAATTTGCAAAACTTAAGGTCTCGTGCGACTGAGTTGCCTGTTACGGAATTTTGTGACTTGTTCTTCTGAATGTCTAATTGGCCAAAATAAATAACTTTCGATCTTTCAAGACACTTCTTTGGGATCATTTTCACTTGGTATCAAAGTACCAGTCCACTTCCAAAGTCACCATCTCCTCCCATTGAAAAAGAAAATCTGATGCATGTAAAGTCTCCTATTCAATTTCCTACCTGCAGTTAATTTATTCGATACATTTGTTTGATAGGTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGGGTAAATTCTGGCTACCTTATGCTAAAATTGCGTTCTATTCCCTGATTGTCCTGATATTTTTTAGATGGTGGCTTCTCTATAAGAGGGTGGGTACACAAAGTAATGGTACTAGTAGTTGTTGTTCTTATTGATTTTTTTTTGATGAAGTAAGTTGTTTCATTACCGGCATCAAGAAGATGCAAAGAGTACAAAAGAAGATATGCTAGCTCCGTTACATGACAGCAGTTAAGACACGGGAGCGAGCCACCAATTCAAAAAATCTAGACAAGGCTTAAAACATGACTGTGTCTGGCCTAGAGTTAAAGAGCTAATAAAATCTAAGAAAGCAGTGTAACTATTCACATAAGACGGGTTGGACCAACAAAATAGACTGAACAAACATTTAGCTTTGAGTGAGTGATTATGAGTTGAAATTCCATCATAATACCGTTGATTCCTTTCTGTCCATAGGCACCAATAATTACATGCTGGAATCATTCTCCAGGTGTTCCTGATGGCTCGATCAATTGTCAAGTGGCCCCAACTCACAACAACTTCACTGATAGTTTGAGGCATCACCCAGTTCAAATTGAATAGGGGAAGGAACATATGCCATATGCTTGCAGCCACCGCACAATGCAAGAAAAGATGATTTACTGATTCTGCACTTTCCTGACACAAATAACACCTGCTGACCAGCTGGAAGTTTCTTCTACAAAGATTGTCCACTGTCAAACAATCATTCTTTAATGCCAACCAGCTGAAGCATATTACCTTTGGTGGTAGCTTTGTTTTCCAGATTAGTTTCCATGGCCATAAATCTGTAATATCATTCTGGGCGTGCAACAATTTATGCCCCTTCTTTATAGTGTATTCCTTTGCCTTAGGACCCCAACAGATGATATCCGTAGCTTGCGGATTCATGTTATAACCTTCCAGTCTACCCATTAATTCAACCAGACTGCCAAGCTCCCAATAATTGAAGTTTCTCATGAAAAGTAGATTCCATTGATTGTCCTCTCTGATCTGCGCAATTGTAGTGTCAGGATCACGTGCTATTAGGAAGAGAGTTTGGCAAAGTTCTTTCAAGATGAAATTCCCAAGCCACCTATCTTTCCAGAATCTCATTCAGGCCATTCCCAACTTTGAAAGAATTTGTTGACCAAAATCTTCCCAATATTTGCGTATATGTTTCCATGCCCCTACCCCGTGTGGAGAATTGCTTGCTTAGTACACCAGTGGTTTAGTTCAGTTGTTCTTATTGTTGTTGTTATTGTTTGCAACAGAAGAAAGTTATGCATAAATGTATCATCTCATGGAATGCTTATTTTAACCATTTATCAGGTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAGGTTAGCTACGATACTTGTGCGGTGGCAATACACTAATTTTGTATAACGAAGTGTGCCAGCTGTCTGGTTGGATACAAGTTTCCATTTTTTCCTCTCTAGACTATGTTCTTAGGAAGACTGACACTGGAGCTTTTTCATTATCAAGCTACTCAATTTGGGTAAACTCAGAAGGGGGGTTATTCCTTAATTAGTTGCACAAAAAATTGTCACCAGTCCTCTAGGCTTTTGCACTGTATGTACAATTGGATAGCTAGTGAAAATGTTATGGTTACCTTGTAGTTTCACAAAAAAAATATTCCTTATGGGTTAGTAATGACCTAAATAATTTGTCTATGCAAGTTGTGACATTTGAGTACATTGCCATGGCTATGACTTTTTTGTAGGCACCATGACTATGGAATTTAAAATGTAAAATAGTAAGGACAATTTCGTGAGCTAATTGTAATGCAGAAATAGAAAGATAAAAAATGGATTTGGATGACCAAAACAACAGGATAGGGATCAGCTTTTGTTTGGTCATGCAGTGTCACCAAGCTTGCCATTAGAAACCCTGGTAGTAACCAGGCTAGCTAAGCCCAACTGACTCATGTTACATGTAACTAATCAACCAAGAGATAATAATGAGTGTGGAAAACTCATAGGAAATCACAATTAGCTCATTGAAGACGAATCCACCAATAGTATGGATGAAGAACATGATAGATACCCATTGCAGATCCCACCACGGCCTTCTGCCTTCATTTGGTTCTAGTTGACTCAGTACTGTTTTCTGATGTTTCAGCTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAGGTATGATCCTTAAGTCTTGACGTTGTTTATGAACAGAAAAATGCATGCAACATTTCAATTTTGTGGCATCTTTGAGTATGCAAACTATCATGATAAAATCAAATTAATGGCAAGTTGATGATGTTTTTTGCATGAGAAAATCCTATTTTTGCAATGAACAGCAAAAATCTGTTCTTTCTTTTATATCATATGGTTTGTACTGCTCGTGAACAGACATGGTGTTGCAAGGATTTGTCGTTTGACTATTAGGCTTGTAATGCAGATAGCACCAAACTAGATTAATGATCTCCTCCTCTCTCTTTTTTCTTTTTTAAAATTAAATTTCCTCCTTTTTAATAAGATTTGTAACTTATATATATTACGTACAACTAGTTGACTGCCATTTCTTCATCTTCAACATTTTCTTGGTTGAGCTATCATGTGCATGCGTAGTTAATTTCAAAAAGTAATATAAACAGGAACAATTGACTGACTAGAAAATGAGGAGAGTTGAACTTCTCTGGAGGACTTGTAGGGTCTTGCTAGCTAGAACAATTGTGGCACTAGCCAAGAAATTCATTTTGAAGGCATAGAAAATAGTGTATATTTATATGTTAATACCTTGTTGTCAAAATAATAGCATGTCAAAATATCTTACTGAGAGGCCTTATATCTTACTGGAAGCAAGTGTCCTTGCAAAAGACAGAATTAGATGGAGAATTATCGCTGCTTCAATATGATGGGCAATCTGGAAAGAGAAATTCCAGATGTTTAGAAGGCATAGAAAATAGGTGCATGACGTTAAACTTAACTGCATTTTGTTGTTATGTCATTGGTGTAATCAATTTTACTCATGTCTCTATAGTTGATGTTTTAGATTCAATATAAAAATAGAGTAATGGAGTCTGGAGTGAATATGCATATAAGGTTTGAGTACAACCCATGTACTTTTGTGATATAATACAAAGTTACCAAGTTAAAAAAAATATATCTTACAATAAGGTTCTCTCGTTTGTTGATCCGATGAGAATTAACAAGCAATAGAGCAATGTGGTGATATTTAGGGATAGATAATTAATTTTCTGCTCTAATGTTCTGCGAGCCGTGATAGTCCCTTTATCCGTTAGCTTTTTCAATCAAGTAATTCTCTATTCAATATAAATACTCAAGTTTGACCTTCTAACTCTGCAGCTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAA</genome_strand>
        <mrna_strand>AAATTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAG........................................................................................................................................................ATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAG............................................................................................................GCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTG.....................................................................GAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAA..........................................................................................................................................................ACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTG........................................................................................................ATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACACCATTTTAAGGGTCGTATGAATGAGAACACAGGTTTTCTTTTGCTCAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E548424" ref_strand="+" ref_description="SGN-E548424 [TUS-61-B5]">
      <seq>tttaaaccctgacaaagaagaagatgaaatttagggcttctcagagaattccttgcttcacttacaatggacgcttcagtcatctacatgcgcagcgtttccatttcactacctttcttcgtaaggtacaagccactgaagctcgagcttcgcttaatcgtggcggcagtagtagtaacagcagctctcagggtaacactcttttgttgcctggtgcaacagtcgcaactatagttatgcttggtcttctccatgctcgacgtctctatgatgatcagaagattgaagacgcaagagagaaaggaattttagaattccagcctgatgtaaaggctactttcatgagattacttcctctacgctccatctctagattctggggtaccttgaccaatgtggaactcccgatgtggctgcgcccttctgtgtataaaggatgggctagagcatttcattcaaacttggaagaagtagcactgcctttggaagaatatgcatctttacgggagttctttgtcagaagattgaaagagggtacccgacctattgatccggatccctgttgtctgattagtccagttgatggaactgttctacaattcggagagttgaaagaagttggggctatgattgagcaagtcaaaggattttcttattctgtttcttcgcttcttggtgccagctcccntccttccatgaaatgtgttgatgacacacaaatcaagatggtggggcagaaggttctatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2056" stop="6690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2356" g_stop="2547" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2548" i_stop="5242" i_length="2695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5243" g_stop="5331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="281" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5332" i_stop="5483" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5484" g_stop="5534" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="332" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5535" i_stop="5642" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5643" g_stop="5708" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="398" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5777" i_length="69">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5778" g_stop="5838" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="459" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5839" i_stop="5992" i_length="154">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5993" g_stop="6102" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="569" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="6207" g_stop="6390" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="752" r_length="183" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E548424" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>753</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2356" e_stop="2547"/>
          <exon e_start="5243" e_stop="5331"/>
          <exon e_start="5484" e_stop="5534"/>
          <exon e_start="5643" e_stop="5708"/>
          <exon e_start="5778" e_stop="5838"/>
          <exon e_start="5993" e_stop="6102"/>
          <exon e_start="6207" e_stop="6390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGGGTACAACTCTGTTTTTTACTTCTCTGCTTGAAAAAAATTGTATATGGAACTTCAGTTGAGTTGCATTTTAGTTCAGAATCATTTATACTGTTAATGGTGAGAACATAGTGCAATATATTTTGTTACAACTAATAATACTTCTCATTCGGAATATCTAAGTTCTCATTCTATAGGTAAATTTCTGGCTGATTTATTAAGTTGTATCTGGTGGAACAGTGAAGGTGCGTCCAAGCTTGCTTAGATACCACCACCAACAACAAATGATGTGTGATGTCATACGTGGGATATGAGGAGGGTAGAGTGTACACAAACAATAGTGAGGTTTTTTCCAATTGACTCAGACTCAAAGAGCTATAAAGGTAGTAGCAACAAGTAGAAACATCAAGAAGATAATAATATAATCAAGGCTTAAGGAACAACATGTACTAATAGAAATGTGAAAATAATGAAAAAGAAAAATAATACTAATACATAGAGAAGGAAAAGAAATCTGTCCGATTATCTACTAACCTCTACCCTAATTTTCAACCTCCTTGCCTTCCTATCGAGGGGAATATCTTCGGTGAGCTAAAGTTGTGTCGCATCATGCTTAATTACCTCACAACAATACTTATTTGACCTATCTCTACCCCTCCTCAAGTCCACAACGACCAACCTCTCTTACCTTCTTACAGGGGCATATGCACATCTCGTCTTCAGATGTTCAAACCATCTCAACCTCACTTTTTGTATCTTGTTCTCCGAGGTCATTTGCACCTTGACCCGAATATCTTCATTTCTAATCATTGTCTTTCTATATATACTCACACATCCTCCTCAACATTCTCATCTCTGTCACTCTCATCTCTGGACATGAGAATTTATGATCAGCCAATACTCCATCATATATAACATAGTCGGTCTAACCACTACCCTATAGAACTTACCTTTATGTGTAGGTAGTACATTCTTATCTCACCAAACACCAGATGTGAGCCTCTATTTAATCTACCTCACCCCAATACAATGTGTGACACCTTGTCAATCTCCATATTACCTTACACTACAAGTATTAAGTTTTTGGTCCTGTTCAACTTGAAACCTTTTGACCCAAGGTTTGTCACCAAACCTCAAGGCTTACTGTTCATGAGGATGGCAAGATAGATAAATTGGTAAGACCAAAAATTAAGATAAGATGGTTGAGATGGAGGAGCACTATGAGATTCTATGTTATACCATAGTATCTACCAAAGTGAAAAGCAAAATTTTAGAGAACAGTTGTATGATCAACAATGTTAAAGAGGATACACATTATTTGTTTTTATTAGAACTTTTACTTATATGAAGAAAAGATGGCTTGGACAATAAGTGCTTGTTTAAGAATGAACAACAAGAGACTTGGGCGTGGGCGTGTGGCCTAGTGATCAATAAAGTGGTTGATAATCCTAAGGTCTATGGTTCAAAACTCAATGGAGACAAAAAACACTAGGAGTCTTCCTATTTGTCCTAACCTTGGTGGATAGAGTTAATCGATACCTGTTGCTGGTGAGAGGTGCCAGGTATCACGTGGAATCAGTCAAGGTGTGCAAAAGTTGGCCCGACAACACGGTCATAAAAAAAAAGAACGAGCAGCAGGTGTGATAGACTAATTGTTCCATACTTGTGCTCTTGATTTTAAACTTATACTACTAAGAATTGTTGTGTGTCAACTAGTAGAATTATGTTTATCATTTGAGTACGCTTCTTGGTCAAAGTTAACATTCAAAGTTGGAAACTAGATTCTAATGGAAGGTCAATACTCCTAAAATACTCAGGTGAATATTCTATTTGGATTCAGGAGAAATTTTACCAACGTGAAGTGTTGTGTTAAATAAACTCAATGGATTGGAATGAAGTTGATATAAAATATTGTCTTGTGGCTTAACCATATTGGTATATGAATTAGCACATAAATAAAACAGAGCACAACGACTGATGTGGCAAATTCCAAACTAACTCTAGTGAAAGTGGAATTGATAGCTGGAGTGAGCTGCACCTTCTTTGCTTTTCCTTTCTTCTTTTTGTAGTTTTTTGTTTATTAATGGGCTTATATATAAAGCTTGTGTCTTGTGAAAATAGGTCTTAGGACTAACTCACACCCCAAAAGCTAGCTCAAAGGGACGAGGATTGCCAAGCCTTATAAGGAGTTCATCCATCTCATTAACCATCGATGTGGACTTTTGTCATTCTTTAACATCTCACCTCACGCCCAGTGCTTGATTTTTGTCATTCTTTAACACCCATTCTCACGCTCAGTGCTAGCATCTGGTGCGTGGACAATTTTGATTTTGGGGATCTGAACATTGGGTGAGAAGGGCCCTGCTCTGATGCCATGTGAAAATAGGTCTTAGGCCTAACTCACACCGCAAAAGCTAGCTCAAAGGGAGGAGAATTGCCGAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCGATGTGGGACTATTGTCATTCTTTAACATGTCTGATGGTGATTTTCGTGATTATATTTTACATGTCCAAAACAGCTATTGTTAACTGCTGAAAATTCAGTTTGGTTCTTGGTTCCTTGCATTTTTAGAACTATGTATAATACTCAATATTACTTGATAGTGCTTAATCGTGTTACTTATTCACCTGCTACAATATTATCATTTGGCACAGCAGCTGAAATTTGACGGCTCTGGTTTATGCAGGTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAGGTATTTTTCTAACTCATAAACCTAGTGAAATAGGTGAACTATATTGGGGCTCTCTTTCGGTTTCTGTGAAATCAGATGACATTGAAAAAGATGAAATCAGATTAAGATATGTTCTCTCCCATGGAGCGGTCCTAACTCTCTTTGAGTCGCAGATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAGGTAAGAATTCACTTCTTTCCTATGCTATTGATCTTTTAGCTTACCACATTATTCTATGTAGTTTTCCATGTTGAACTTACTGGAAATAATTTGCCTTCTCAATTGTAGGCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTGGTAAGTCTCTATCAATTTTAAATAACAGAAGATTCAGCAAAAACTTGACTCCATGCTCTGTTCGTCCAGGAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAAGTAAACAGTCTTTCTAGTTTCTACTTCGTGATGCTTTGAGTGTTCTTCTTACATCTTGATGCTTTAGATATTTGTAGTTCTTCTGTGACACAGTGCAAATAAAACTAAACTTTTGGCGATGCCAATATTTATAAAACTCGGTTTTTGAATCCAGACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTGGTAACTGGTAACCAGCTCCTAGTTATCTGCTGATTCTCTTGATGTTTCAAAATATTGCAGATTATCAAATTTGCTGATCTTTCTGAGTTGGTATGTGGTTGTAGATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATG</genome_strand>
        <mrna_strand>TTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAG........................................................................................................................................................ATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAG............................................................................................................GCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTG.....................................................................GAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAA..........................................................................................................................................................ACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTG........................................................................................................ATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCNTCCTTCCATGAAATGTGTTGATGAC-ACACAAATCAAGATGGTGGGGCAGAAGGTTCTATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E290095" ref_strand="+" ref_description="SGN-E290095 [cLET-5-H11]">
      <seq>ttaaaccctgacaaagaagaagatgaaatttagggcttctcagagaattccttgcttcacttacaatggacgcttcagtcatctacatgcgcagcgtttccatttcactacctttcttcgtaaggtacaagccactgaagctcgagcttcgcttaatcgtggcggcagtagtagtaacagcagctctcagggtaacactcttttgttgcctggtgcaacagtcgcaactatagttatgcttggtcttctccatgctcgacgtctctatgatgatcagaagattgaagacgcaagagagaaaggaattttagaattccagcctgatgtaaaggctactttcatgagattacttcctctacgctccatctctagattctggggtaccttgaccaatgtggaactcccgatgtggctgcgcccttctgtgtataaaggatgggctagagcatttcattcaaacttggaagaagtagcactgcctttggaagaatatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="2057" stop="6332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2357" g_stop="2547" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2548" i_stop="5242" i_length="2695">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5243" g_stop="5331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="280" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5332" i_stop="5483" i_length="152">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5484" g_stop="5534" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="331" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5535" i_stop="5642" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5643" g_stop="5708" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="397" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5709" i_stop="5777" i_length="69">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5778" g_stop="5838" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="458" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5839" i_stop="5992" i_length="154">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.540" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5993" g_stop="6032" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="498" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E290095" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290095" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2357" e_stop="2547"/>
          <exon e_start="5243" e_stop="5331"/>
          <exon e_start="5484" e_stop="5534"/>
          <exon e_start="5643" e_stop="5708"/>
          <exon e_start="5778" e_stop="5838"/>
          <exon e_start="5993" e_stop="6032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGGGTACAACTCTGTTTTTTACTTCTCTGCTTGAAAAAAATTGTATATGGAACTTCAGTTGAGTTGCATTTTAGTTCAGAATCATTTATACTGTTAATGGTGAGAACATAGTGCAATATATTTTGTTACAACTAATAATACTTCTCATTCGGAATATCTAAGTTCTCATTCTATAGGTAAATTTCTGGCTGATTTATTAAGTTGTATCTGGTGGAACAGTGAAGGTGCGTCCAAGCTTGCTTAGATACCACCACCAACAACAAATGATGTGTGATGTCATACGTGGGATATGAGGAGGGTAGAGTGTACACAAACAATAGTGAGGTTTTTTCCAATTGACTCAGACTCAAAGAGCTATAAAGGTAGTAGCAACAAGTAGAAACATCAAGAAGATAATAATATAATCAAGGCTTAAGGAACAACATGTACTAATAGAAATGTGAAAATAATGAAAAAGAAAAATAATACTAATACATAGAGAAGGAAAAGAAATCTGTCCGATTATCTACTAACCTCTACCCTAATTTTCAACCTCCTTGCCTTCCTATCGAGGGGAATATCTTCGGTGAGCTAAAGTTGTGTCGCATCATGCTTAATTACCTCACAACAATACTTATTTGACCTATCTCTACCCCTCCTCAAGTCCACAACGACCAACCTCTCTTACCTTCTTACAGGGGCATATGCACATCTCGTCTTCAGATGTTCAAACCATCTCAACCTCACTTTTTGTATCTTGTTCTCCGAGGTCATTTGCACCTTGACCCGAATATCTTCATTTCTAATCATTGTCTTTCTATATATACTCACACATCCTCCTCAACATTCTCATCTCTGTCACTCTCATCTCTGGACATGAGAATTTATGATCAGCCAATACTCCATCATATATAACATAGTCGGTCTAACCACTACCCTATAGAACTTACCTTTATGTGTAGGTAGTACATTCTTATCTCACCAAACACCAGATGTGAGCCTCTATTTAATCTACCTCACCCCAATACAATGTGTGACACCTTGTCAATCTCCATATTACCTTACACTACAAGTATTAAGTTTTTGGTCCTGTTCAACTTGAAACCTTTTGACCCAAGGTTTGTCACCAAACCTCAAGGCTTACTGTTCATGAGGATGGCAAGATAGATAAATTGGTAAGACCAAAAATTAAGATAAGATGGTTGAGATGGAGGAGCACTATGAGATTCTATGTTATACCATAGTATCTACCAAAGTGAAAAGCAAAATTTTAGAGAACAGTTGTATGATCAACAATGTTAAAGAGGATACACATTATTTGTTTTTATTAGAACTTTTACTTATATGAAGAAAAGATGGCTTGGACAATAAGTGCTTGTTTAAGAATGAACAACAAGAGACTTGGGCGTGGGCGTGTGGCCTAGTGATCAATAAAGTGGTTGATAATCCTAAGGTCTATGGTTCAAAACTCAATGGAGACAAAAAACACTAGGAGTCTTCCTATTTGTCCTAACCTTGGTGGATAGAGTTAATCGATACCTGTTGCTGGTGAGAGGTGCCAGGTATCACGTGGAATCAGTCAAGGTGTGCAAAAGTTGGCCCGACAACACGGTCATAAAAAAAAAGAACGAGCAGCAGGTGTGATAGACTAATTGTTCCATACTTGTGCTCTTGATTTTAAACTTATACTACTAAGAATTGTTGTGTGTCAACTAGTAGAATTATGTTTATCATTTGAGTACGCTTCTTGGTCAAAGTTAACATTCAAAGTTGGAAACTAGATTCTAATGGAAGGTCAATACTCCTAAAATACTCAGGTGAATATTCTATTTGGATTCAGGAGAAATTTTACCAACGTGAAGTGTTGTGTTAAATAAACTCAATGGATTGGAATGAAGTTGATATAAAATATTGTCTTGTGGCTTAACCATATTGGTATATGAATTAGCACATAAATAAAACAGAGCACAACGACTGATGTGGCAAATTCCAAACTAACTCTAGTGAAAGTGGAATTGATAGCTGGAGTGAGCTGCACCTTCTTTGCTTTTCCTTTCTTCTTTTTGTAGTTTTTTGTTTATTAATGGGCTTATATATAAAGCTTGTGTCTTGTGAAAATAGGTCTTAGGACTAACTCACACCCCAAAAGCTAGCTCAAAGGGACGAGGATTGCCAAGCCTTATAAGGAGTTCATCCATCTCATTAACCATCGATGTGGACTTTTGTCATTCTTTAACATCTCACCTCACGCCCAGTGCTTGATTTTTGTCATTCTTTAACACCCATTCTCACGCTCAGTGCTAGCATCTGGTGCGTGGACAATTTTGATTTTGGGGATCTGAACATTGGGTGAGAAGGGCCCTGCTCTGATGCCATGTGAAAATAGGTCTTAGGCCTAACTCACACCGCAAAAGCTAGCTCAAAGGGAGGAGAATTGCCGAAGCCTTATAAGGAGTCCACCCATCTCATTAACCACCGATGTGGGACTATTGTCATTCTTTAACATGTCTGATGGTGATTTTCGTGATTATATTTTACATGTCCAAAACAGCTATTGTTAACTGCTGAAAATTCAGTTTGGTTCTTGGTTCCTTGCATTTTTAGAACTATGTATAATACTCAATATTACTTGATAGTGCTTAATCGTGTTACTTATTCACCTGCTACAATATTATCATTTGGCACAGCAGCTGAAATTTGACGGCTCTGGTTTATGCAGGTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAGGTATTTTTCTAACTCATAAACCTAGTGAAATAGGTGAACTATATTGGGGCTCTCTTTCGGTTTCTGTGAAATCAGATGACATTGAAAAAGATGAAATCAGATTAAGATATGTTCTCTCCCATGGAGCGGTCCTAACTCTCTTTGAGTCGCAGATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAGGTAAGAATTCACTTCTTTCCTATGCTATTGATCTTTTAGCTTACCACATTATTCTATGTAGTTTTCCATGTTGAACTTACTGGAAATAATTTGCCTTCTCAATTGTAGGCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTGGTAAGTCTCTATCAATTTTAAATAACAGAAGATTCAGCAAAAACTTGACTCCATGCTCTGTTCGTCCAGGAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAAGTAAACAGTCTTTCTAGTTTCTACTTCGTGATGCTTTGAGTGTTCTTCTTACATCTTGATGCTTTAGATATTTGTAGTTCTTCTGTGACACAGTGCAAATAAAACTAAACTTTTGGCGATGCCAATATTTATAAAACTCGGTTTTTGAATCCAGACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATC</genome_strand>
        <mrna_strand>TTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAG........................................................................................................................................................ATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAG............................................................................................................GCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTG.....................................................................GAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAA..........................................................................................................................................................ACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543295" ref_strand="+" ref_description="SGN-E543295 [TUS-65-A15]">
      <seq>gttgtctgattagtccagttgatggaactgttctacaattcggagagttgaaagaagttggggctatgattgagcaagtcaaaggattttcttattctgtttcttcgcttcttggtgccagctccctccttcccatgaatgtggttgatgacaacacaaatcaagatggtgggcaagaaggttctatggatgatacgaatcagaagtcctggtggagagtttcattggcttctcctaaagttcgagatcctgcaccagcacgcccaatgaaaggtctcttttactgtgtgatttacttgagtcctggagattatcatcgcatacactcaccagctgattggaatgttcttggccgtcgacatttctctggtcgtctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5897" stop="7426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6095" g_stop="6102" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6207" g_stop="6460" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="262" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6461" i_stop="7017" i_length="557">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7018" g_stop="7124" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="369" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E543295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6095" e_stop="6102"/>
          <exon e_start="6207" e_stop="6460"/>
          <exon e_start="7018" e_stop="7124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCTGGTAACTGGTAACCAGCTCCTAGTTATCTGCTGATTCTCTTGATGTTTCAAAATATTGCAGATTATCAAATTTGCTGATCTTTCTGAGTTGGTATGTGGTTGTAGATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACGGTAACCACAGGAATGTTAACCGTGTAATATGCTGATATCTACATTGTACTATAACATATAAACGCTTCAAATGTATTATCAAAATGTCTGTTTCCACTTGTTGATGCATAGGCTATTTAGTTGATAAAATAGGCTATTTAGTATCTTTAGCTGCCATGGTACTTGTTGAACTGCTCTGGGATCCTTCTTCCATATTATTTTTTGTCTAAAAACATAACTCTTTCTTGTACTTTTTTAGAACTGTATATTTATATTCTTTAACCATTCTTGGATAACGTACTTATCCAAATATCATAATAATCTTCTAATGGAAATGAGCAGCTATAATACTAGACATATCCAACAAAAGAAAAGTGCATCTATACTACTGCACAAATTATAACCAGTATGTCTAGTTAGCAGGTGCCTAATAATTTGTAGTAGTTAGTCATCAGCTGAACCTTTATTCTTTTCTCCTTTTAGATTTTCTACTTTTTGTTCGCGTTGGATTGTAATTGCTTGATGATAAACGAGAGACTGCTACTTAAATTTTAAAACTGAAAATTAACTTATTGCAGCCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG</genome_strand>
        <mrna_strand>GTTGTCTG........................................................................................................ATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303175" ref_strand="+" ref_description="SGN-E303175 [cLEX-5-F4]">
      <seq>ttgtctgattagtccagttgatggaactgttctacaattcggagagttgaaagaagttggggctatgattgagcaagtcaaaggattttcttattctgtttcttcgcttcttggtgccagctccctccttcccatgaatgtggttgatgacaacacaaatcaagatggtgggcaagaaggttctatggatgatacgaatcagaagtcctggtggagagtttcattggcttctcctaaagttcgagatcctgcaccagcacgcccaatgaaaggtctcttttactgtgtgatttacttgagtcctggagattatcatcgcatacactcaccagctgattggaatgttcttggccgtcgacatttctctggtcgtctctttcccatgaatgaacgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5897" stop="8120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6096" g_stop="6102" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104">
            <donor d_prob="0.874" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6207" g_stop="6460" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="261" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6461" i_stop="7017" i_length="557">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7018" g_stop="7124" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="368" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7125" i_stop="7792" i_length="668">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7793" g_stop="7820" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="396" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E303175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6096" e_stop="6102"/>
          <exon e_start="6207" e_stop="6460"/>
          <exon e_start="7018" e_stop="7124"/>
          <exon e_start="7793" e_stop="7820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTGGTAACTGGTAACCAGCTCCTAGTTATCTGCTGATTCTCTTGATGTTTCAAAATATTGCAGATTATCAAATTTGCTGATCTTTCTGAGTTGGTATGTGGTTGTAGATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACGGTAACCACAGGAATGTTAACCGTGTAATATGCTGATATCTACATTGTACTATAACATATAAACGCTTCAAATGTATTATCAAAATGTCTGTTTCCACTTGTTGATGCATAGGCTATTTAGTTGATAAAATAGGCTATTTAGTATCTTTAGCTGCCATGGTACTTGTTGAACTGCTCTGGGATCCTTCTTCCATATTATTTTTTGTCTAAAAACATAACTCTTTCTTGTACTTTTTTAGAACTGTATATTTATATTCTTTAACCATTCTTGGATAACGTACTTATCCAAATATCATAATAATCTTCTAATGGAAATGAGCAGCTATAATACTAGACATATCCAACAAAAGAAAAGTGCATCTATACTACTGCACAAATTATAACCAGTATGTCTAGTTAGCAGGTGCCTAATAATTTGTAGTAGTTAGTCATCAGCTGAACCTTTATTCTTTTCTCCTTTTAGATTTTCTACTTTTTGTTCGCGTTGGATTGTAATTGCTTGATGATAAACGAGAGACTGCTACTTAAATTTTAAAACTGAAAATTAACTTATTGCAGCCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTGGTAAGTCCTTGCATTTGCATCCATAGGTTAAGAGGAGTTCATCCATCATAGTAGGCTTTCATTGTCCATGTTGTTTTCTGTTTACCTATCCCTGATCACTTCACCTAGCCCCCTCTACCCACCCTCCCCAAATGGTCAAATTACAATGATATGCAAAGGCTACACTCAGAAAGGCTCTTTTGGGGAGTATAATATGTTGATACATCAATATTTATGCTTCAACAAATGAGGGGTCAGTGACAAGTATTCTCTCTGTTTTCATGCATCTGCTAACAGTGTTTGATATGATTATGAAAAGGTATTATGTGTCTGACAACTAATATAGAGGACTTTACCATAATAACCATTGTGGTTGTATACAGTCAAGTACTTAACCCGGCTGGAAAATTTATCAAATATTATCAATTTGCAAAACTTAAGGTCTCGTGCGACTGAGTTGCCTGTTACGGAATTTTGTGACTTGTTCTTCTGAATGTCTAATTGGCCAAAATAAATAACTTTCGATCTTTCAAGACACTTCTTTGGGATCATTTTCACTTGGTATCAAAGTACCAGTCCACTTCCAAAGTCACCATCTCCTCCCATTGAAAAAGAAAATCTGATGCATGTAAAGTCTCCTATTCAATTTCCTACCTGCAGTTAATTTATTCGATACATTTGTTTGATAGGTCGTCTCTTTCCCATGAATGAACGAGC</genome_strand>
        <mrna_strand>TTGTCTG........................................................................................................ATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCTTTCCCATGAATGAACGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E543294" ref_strand="+" ref_description="SGN-E543294 [TUS-65-A15](-)">
      <seq>caagatggtgggcaagaaggttctatggatgatacgaatcagaagtcctggtggagagtttcattggcttctcctaaagttcgagatcctgcaccagcacgcccaatgaaaggtctcttttactgtgtgatttacttgagtcctggagattatcatcgcatacactcaccagctgattggaatgttcttggccgtcgacatttctctggtcgtctctttcccatgaatgaacgagctacgaggacaataagaaatttatatgtggagaatgaaagggttgtgcttgaaggtaaatggcaagaaggttttatggcaatggcagccgtaggtgcaacgaatattggttccattgagcttttcattgaaccaaccctgcgaacaaatagaccatggaagaagctgctacatccagaacctcctgaagaacaggtatacgaacctagaggcactggtgttttgctgaagaaaggagatgagctagcagctttcaatatgggttcaacagtggttctagtcttccaagctccgatctcacaaccttctgcagataaaagcacatcagcggaattcagtttttgtattaaaaagagagaccgtgtccgcatgggagaggccctgggcaggtggcatgattcctagttacaatatttgaattacaaaattaagggtggcaagtttgtattatagaaaagccttctagggaaacacttcacagttattactttttaggtagattgagtctgaaatggtcttcattctgttacaatagtatgaggcaactccattttaagggtcgtatgaatgagaactcaggttttcttttgctcagaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6060" stop="11995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6360" g_stop="6460" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6461" i_stop="7017" i_length="557">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7018" g_stop="7124" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="208" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7125" i_stop="7792" i_length="668">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7793" g_stop="7860" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="276" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7861" i_stop="9183" i_length="1323">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9184" g_stop="9261" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="354" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10043" g_stop="10165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="477" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11336" g_stop="11699" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="841" r_length="364" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E543294" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E543294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6360" e_stop="6460"/>
          <exon e_start="7018" e_stop="7124"/>
          <exon e_start="7793" e_stop="7860"/>
          <exon e_start="9184" e_stop="9261"/>
          <exon e_start="10043" e_stop="10165"/>
          <exon e_start="11336" e_stop="11699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACGGTAACCACAGGAATGTTAACCGTGTAATATGCTGATATCTACATTGTACTATAACATATAAACGCTTCAAATGTATTATCAAAATGTCTGTTTCCACTTGTTGATGCATAGGCTATTTAGTTGATAAAATAGGCTATTTAGTATCTTTAGCTGCCATGGTACTTGTTGAACTGCTCTGGGATCCTTCTTCCATATTATTTTTTGTCTAAAAACATAACTCTTTCTTGTACTTTTTTAGAACTGTATATTTATATTCTTTAACCATTCTTGGATAACGTACTTATCCAAATATCATAATAATCTTCTAATGGAAATGAGCAGCTATAATACTAGACATATCCAACAAAAGAAAAGTGCATCTATACTACTGCACAAATTATAACCAGTATGTCTAGTTAGCAGGTGCCTAATAATTTGTAGTAGTTAGTCATCAGCTGAACCTTTATTCTTTTCTCCTTTTAGATTTTCTACTTTTTGTTCGCGTTGGATTGTAATTGCTTGATGATAAACGAGAGACTGCTACTTAAATTTTAAAACTGAAAATTAACTTATTGCAGCCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTGGTAAGTCCTTGCATTTGCATCCATAGGTTAAGAGGAGTTCATCCATCATAGTAGGCTTTCATTGTCCATGTTGTTTTCTGTTTACCTATCCCTGATCACTTCACCTAGCCCCCTCTACCCACCCTCCCCAAATGGTCAAATTACAATGATATGCAAAGGCTACACTCAGAAAGGCTCTTTTGGGGAGTATAATATGTTGATACATCAATATTTATGCTTCAACAAATGAGGGGTCAGTGACAAGTATTCTCTCTGTTTTCATGCATCTGCTAACAGTGTTTGATATGATTATGAAAAGGTATTATGTGTCTGACAACTAATATAGAGGACTTTACCATAATAACCATTGTGGTTGTATACAGTCAAGTACTTAACCCGGCTGGAAAATTTATCAAATATTATCAATTTGCAAAACTTAAGGTCTCGTGCGACTGAGTTGCCTGTTACGGAATTTTGTGACTTGTTCTTCTGAATGTCTAATTGGCCAAAATAAATAACTTTCGATCTTTCAAGACACTTCTTTGGGATCATTTTCACTTGGTATCAAAGTACCAGTCCACTTCCAAAGTCACCATCTCCTCCCATTGAAAAAGAAAATCTGATGCATGTAAAGTCTCCTATTCAATTTCCTACCTGCAGTTAATTTATTCGATACATTTGTTTGATAGGTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGGGTAAATTCTGGCTACCTTATGCTAAAATTGCGTTCTATTCCCTGATTGTCCTGATATTTTTTAGATGGTGGCTTCTCTATAAGAGGGTGGGTACACAAAGTAATGGTACTAGTAGTTGTTGTTCTTATTGATTTTTTTTTGATGAAGTAAGTTGTTTCATTACCGGCATCAAGAAGATGCAAAGAGTACAAAAGAAGATATGCTAGCTCCGTTACATGACAGCAGTTAAGACACGGGAGCGAGCCACCAATTCAAAAAATCTAGACAAGGCTTAAAACATGACTGTGTCTGGCCTAGAGTTAAAGAGCTAATAAAATCTAAGAAAGCAGTGTAACTATTCACATAAGACGGGTTGGACCAACAAAATAGACTGAACAAACATTTAGCTTTGAGTGAGTGATTATGAGTTGAAATTCCATCATAATACCGTTGATTCCTTTCTGTCCATAGGCACCAATAATTACATGCTGGAATCATTCTCCAGGTGTTCCTGATGGCTCGATCAATTGTCAAGTGGCCCCAACTCACAACAACTTCACTGATAGTTTGAGGCATCACCCAGTTCAAATTGAATAGGGGAAGGAACATATGCCATATGCTTGCAGCCACCGCACAATGCAAGAAAAGATGATTTACTGATTCTGCACTTTCCTGACACAAATAACACCTGCTGACCAGCTGGAAGTTTCTTCTACAAAGATTGTCCACTGTCAAACAATCATTCTTTAATGCCAACCAGCTGAAGCATATTACCTTTGGTGGTAGCTTTGTTTTCCAGATTAGTTTCCATGGCCATAAATCTGTAATATCATTCTGGGCGTGCAACAATTTATGCCCCTTCTTTATAGTGTATTCCTTTGCCTTAGGACCCCAACAGATGATATCCGTAGCTTGCGGATTCATGTTATAACCTTCCAGTCTACCCATTAATTCAACCAGACTGCCAAGCTCCCAATAATTGAAGTTTCTCATGAAAAGTAGATTCCATTGATTGTCCTCTCTGATCTGCGCAATTGTAGTGTCAGGATCACGTGCTATTAGGAAGAGAGTTTGGCAAAGTTCTTTCAAGATGAAATTCCCAAGCCACCTATCTTTCCAGAATCTCATTCAGGCCATTCCCAACTTTGAAAGAATTTGTTGACCAAAATCTTCCCAATATTTGCGTATATGTTTCCATGCCCCTACCCCGTGTGGAGAATTGCTTGCTTAGTACACCAGTGGTTTAGTTCAGTTGTTCTTATTGTTGTTGTTATTGTTTGCAACAGAAGAAAGTTATGCATAAATGTATCATCTCATGGAATGCTTATTTTAACCATTTATCAGGTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAGGTTAGCTACGATACTTGTGCGGTGGCAATACACTAATTTTGTATAACGAAGTGTGCCAGCTGTCTGGTTGGATACAAGTTTCCATTTTTTCCTCTCTAGACTATGTTCTTAGGAAGACTGACACTGGAGCTTTTTCATTATCAAGCTACTCAATTTGGGTAAACTCAGAAGGGGGGTTATTCCTTAATTAGTTGCACAAAAAATTGTCACCAGTCCTCTAGGCTTTTGCACTGTATGTACAATTGGATAGCTAGTGAAAATGTTATGGTTACCTTGTAGTTTCACAAAAAAAATATTCCTTATGGGTTAGTAATGACCTAAATAATTTGTCTATGCAAGTTGTGACATTTGAGTACATTGCCATGGCTATGACTTTTTTGTAGGCACCATGACTATGGAATTTAAAATGTAAAATAGTAAGGACAATTTCGTGAGCTAATTGTAATGCAGAAATAGAAAGATAAAAAATGGATTTGGATGACCAAAACAACAGGATAGGGATCAGCTTTTGTTTGGTCATGCAGTGTCACCAAGCTTGCCATTAGAAACCCTGGTAGTAACCAGGCTAGCTAAGCCCAACTGACTCATGTTACATGTAACTAATCAACCAAGAGATAATAATGAGTGTGGAAAACTCATAGGAAATCACAATTAGCTCATTGAAGACGAATCCACCAATAGTATGGATGAAGAACATGATAGATACCCATTGCAGATCCCACCACGGCCTTCTGCCTTCATTTGGTTCTAGTTGACTCAGTACTGTTTTCTGATGTTTCAGCTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAGGTATGATCCTTAAGTCTTGACGTTGTTTATGAACAGAAAAATGCATGCAACATTTCAATTTTGTGGCATCTTTGAGTATGCAAACTATCATGATAAAATCAAATTAATGGCAAGTTGATGATGTTTTTTGCATGAGAAAATCCTATTTTTGCAATGAACAGCAAAAATCTGTTCTTTCTTTTATATCATATGGTTTGTACTGCTCGTGAACAGACATGGTGTTGCAAGGATTTGTCGTTTGACTATTAGGCTTGTAATGCAGATAGCACCAAACTAGATTAATGATCTCCTCCTCTCTCTTTTTTCTTTTTTAAAATTAAATTTCCTCCTTTTTAATAAGATTTGTAACTTATATATATTACGTACAACTAGTTGACTGCCATTTCTTCATCTTCAACATTTTCTTGGTTGAGCTATCATGTGCATGCGTAGTTAATTTCAAAAAGTAATATAAACAGGAACAATTGACTGACTAGAAAATGAGGAGAGTTGAACTTCTCTGGAGGACTTGTAGGGTCTTGCTAGCTAGAACAATTGTGGCACTAGCCAAGAAATTCATTTTGAAGGCATAGAAAATAGTGTATATTTATATGTTAATACCTTGTTGTCAAAATAATAGCATGTCAAAATATCTTACTGAGAGGCCTTATATCTTACTGGAAGCAAGTGTCCTTGCAAAAGACAGAATTAGATGGAGAATTATCGCTGCTTCAATATGATGGGCAATCTGGAAAGAGAAATTCCAGATGTTTAGAAGGCATAGAAAATAGGTGCATGACGTTAAACTTAACTGCATTTTGTTGTTATGTCATTGGTGTAATCAATTTTACTCATGTCTCTATAGTTGATGTTTTAGATTCAATATAAAAATAGAGTAATGGAGTCTGGAGTGAATATGCATATAAGGTTTGAGTACAACCCATGTACTTTTGTGATATAATACAAAGTTACCAAGTTAAAAAAAATATATCTTACAATAAGGTTCTCTCGTTTGTTGATCCGATGAGAATTAACAAGCAATAGAGCAATGTGGTGATATTTAGGGATAGATAATTAATTTTCTGCTCTAATGTTCTGCGAGCCGTGATAGTCCCTTTATCCGTTAGCTTTTTCAATCAAGTAATTCTCTATTCAATATAAATACTCAAGTTTGACCTTCTAACTCTGCAGCTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTA</genome_strand>
        <mrna_strand>CAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E540674" ref_strand="+" ref_description="SGN-E540674 [TUS-61-B5](-)">
      <seq>agatcctgcaccagcacggtaaccacagcccaatgaaaggtctcttttactgtgtgatttacttgagtcctggagattatcatcgcatacactcaccagctgattggaatgttcttggccgtcgacatttctctggtaaatggcaagaaggttttatggcaatggcagccgtaggtgcaacgaatattggttccattgagcttttcattgaaccaaccctgcgaacaaatagaccatggaagaagctgctacatccagaacctcctgaagaacaggtatacgaacctagaggcactggtgttttgctgaagaaaggagatgagctagcagctttcaatatgggttcaacagtggttctagtcttccaagctccgatctcacaaccttctgcagataaaagcacatcagcggaattcagtttttgtattaaaaagagagaccgtgtccgcatgggagaggccctgggcaggtggcatgattcctagttacaatatttgaattacaaaattaagggtggcaagtttgtattatagaaaagccttctagggaaacacttcacagttattactttttaggtagattgagtctgaaatggtcttcattctgttacaatagtatgaggcaactccattttaagggtcgtatgaatgagaactcaggttttcttttgctcagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6143" stop="11995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6443" g_stop="6470" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6471" i_stop="7017" i_length="547">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.569" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7018" g_stop="7124" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="135" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7125" i_stop="9196" i_length="2072">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9197" g_stop="9261" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="200" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10043" g_stop="10165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="323" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11336" g_stop="11701" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="689" r_length="366" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E540674" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6443" e_stop="6470"/>
          <exon e_start="7018" e_stop="7124"/>
          <exon e_start="9197" e_stop="9261"/>
          <exon e_start="10043" e_stop="10165"/>
          <exon e_start="11336" e_stop="11701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCCTGCACCAGCACGGTAACCACAGGAATGTTAACCGTGTAATATGCTGATATCTACATTGTACTATAACATATAAACGCTTCAAATGTATTATCAAAATGTCTGTTTCCACTTGTTGATGCATAGGCTATTTAGTTGATAAAATAGGCTATTTAGTATCTTTAGCTGCCATGGTACTTGTTGAACTGCTCTGGGATCCTTCTTCCATATTATTTTTTGTCTAAAAACATAACTCTTTCTTGTACTTTTTTAGAACTGTATATTTATATTCTTTAACCATTCTTGGATAACGTACTTATCCAAATATCATAATAATCTTCTAATGGAAATGAGCAGCTATAATACTAGACATATCCAACAAAAGAAAAGTGCATCTATACTACTGCACAAATTATAACCAGTATGTCTAGTTAGCAGGTGCCTAATAATTTGTAGTAGTTAGTCATCAGCTGAACCTTTATTCTTTTCTCCTTTTAGATTTTCTACTTTTTGTTCGCGTTGGATTGTAATTGCTTGATGATAAACGAGAGACTGCTACTTAAATTTTAAAACTGAAAATTAACTTATTGCAGCCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTGGTAAGTCCTTGCATTTGCATCCATAGGTTAAGAGGAGTTCATCCATCATAGTAGGCTTTCATTGTCCATGTTGTTTTCTGTTTACCTATCCCTGATCACTTCACCTAGCCCCCTCTACCCACCCTCCCCAAATGGTCAAATTACAATGATATGCAAAGGCTACACTCAGAAAGGCTCTTTTGGGGAGTATAATATGTTGATACATCAATATTTATGCTTCAACAAATGAGGGGTCAGTGACAAGTATTCTCTCTGTTTTCATGCATCTGCTAACAGTGTTTGATATGATTATGAAAAGGTATTATGTGTCTGACAACTAATATAGAGGACTTTACCATAATAACCATTGTGGTTGTATACAGTCAAGTACTTAACCCGGCTGGAAAATTTATCAAATATTATCAATTTGCAAAACTTAAGGTCTCGTGCGACTGAGTTGCCTGTTACGGAATTTTGTGACTTGTTCTTCTGAATGTCTAATTGGCCAAAATAAATAACTTTCGATCTTTCAAGACACTTCTTTGGGATCATTTTCACTTGGTATCAAAGTACCAGTCCACTTCCAAAGTCACCATCTCCTCCCATTGAAAAAGAAAATCTGATGCATGTAAAGTCTCCTATTCAATTTCCTACCTGCAGTTAATTTATTCGATACATTTGTTTGATAGGTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGGGTAAATTCTGGCTACCTTATGCTAAAATTGCGTTCTATTCCCTGATTGTCCTGATATTTTTTAGATGGTGGCTTCTCTATAAGAGGGTGGGTACACAAAGTAATGGTACTAGTAGTTGTTGTTCTTATTGATTTTTTTTTGATGAAGTAAGTTGTTTCATTACCGGCATCAAGAAGATGCAAAGAGTACAAAAGAAGATATGCTAGCTCCGTTACATGACAGCAGTTAAGACACGGGAGCGAGCCACCAATTCAAAAAATCTAGACAAGGCTTAAAACATGACTGTGTCTGGCCTAGAGTTAAAGAGCTAATAAAATCTAAGAAAGCAGTGTAACTATTCACATAAGACGGGTTGGACCAACAAAATAGACTGAACAAACATTTAGCTTTGAGTGAGTGATTATGAGTTGAAATTCCATCATAATACCGTTGATTCCTTTCTGTCCATAGGCACCAATAATTACATGCTGGAATCATTCTCCAGGTGTTCCTGATGGCTCGATCAATTGTCAAGTGGCCCCAACTCACAACAACTTCACTGATAGTTTGAGGCATCACCCAGTTCAAATTGAATAGGGGAAGGAACATATGCCATATGCTTGCAGCCACCGCACAATGCAAGAAAAGATGATTTACTGATTCTGCACTTTCCTGACACAAATAACACCTGCTGACCAGCTGGAAGTTTCTTCTACAAAGATTGTCCACTGTCAAACAATCATTCTTTAATGCCAACCAGCTGAAGCATATTACCTTTGGTGGTAGCTTTGTTTTCCAGATTAGTTTCCATGGCCATAAATCTGTAATATCATTCTGGGCGTGCAACAATTTATGCCCCTTCTTTATAGTGTATTCCTTTGCCTTAGGACCCCAACAGATGATATCCGTAGCTTGCGGATTCATGTTATAACCTTCCAGTCTACCCATTAATTCAACCAGACTGCCAAGCTCCCAATAATTGAAGTTTCTCATGAAAAGTAGATTCCATTGATTGTCCTCTCTGATCTGCGCAATTGTAGTGTCAGGATCACGTGCTATTAGGAAGAGAGTTTGGCAAAGTTCTTTCAAGATGAAATTCCCAAGCCACCTATCTTTCCAGAATCTCATTCAGGCCATTCCCAACTTTGAAAGAATTTGTTGACCAAAATCTTCCCAATATTTGCGTATATGTTTCCATGCCCCTACCCCGTGTGGAGAATTGCTTGCTTAGTACACCAGTGGTTTAGTTCAGTTGTTCTTATTGTTGTTGTTATTGTTTGCAACAGAAGAAAGTTATGCATAAATGTATCATCTCATGGAATGCTTATTTTAACCATTTATCAGGTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAGGTTAGCTACGATACTTGTGCGGTGGCAATACACTAATTTTGTATAACGAAGTGTGCCAGCTGTCTGGTTGGATACAAGTTTCCATTTTTTCCTCTCTAGACTATGTTCTTAGGAAGACTGACACTGGAGCTTTTTCATTATCAAGCTACTCAATTTGGGTAAACTCAGAAGGGGGGTTATTCCTTAATTAGTTGCACAAAAAATTGTCACCAGTCCTCTAGGCTTTTGCACTGTATGTACAATTGGATAGCTAGTGAAAATGTTATGGTTACCTTGTAGTTTCACAAAAAAAATATTCCTTATGGGTTAGTAATGACCTAAATAATTTGTCTATGCAAGTTGTGACATTTGAGTACATTGCCATGGCTATGACTTTTTTGTAGGCACCATGACTATGGAATTTAAAATGTAAAATAGTAAGGACAATTTCGTGAGCTAATTGTAATGCAGAAATAGAAAGATAAAAAATGGATTTGGATGACCAAAACAACAGGATAGGGATCAGCTTTTGTTTGGTCATGCAGTGTCACCAAGCTTGCCATTAGAAACCCTGGTAGTAACCAGGCTAGCTAAGCCCAACTGACTCATGTTACATGTAACTAATCAACCAAGAGATAATAATGAGTGTGGAAAACTCATAGGAAATCACAATTAGCTCATTGAAGACGAATCCACCAATAGTATGGATGAAGAACATGATAGATACCCATTGCAGATCCCACCACGGCCTTCTGCCTTCATTTGGTTCTAGTTGACTCAGTACTGTTTTCTGATGTTTCAGCTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAGGTATGATCCTTAAGTCTTGACGTTGTTTATGAACAGAAAAATGCATGCAACATTTCAATTTTGTGGCATCTTTGAGTATGCAAACTATCATGATAAAATCAAATTAATGGCAAGTTGATGATGTTTTTTGCATGAGAAAATCCTATTTTTGCAATGAACAGCAAAAATCTGTTCTTTCTTTTATATCATATGGTTTGTACTGCTCGTGAACAGACATGGTGTTGCAAGGATTTGTCGTTTGACTATTAGGCTTGTAATGCAGATAGCACCAAACTAGATTAATGATCTCCTCCTCTCTCTTTTTTCTTTTTTAAAATTAAATTTCCTCCTTTTTAATAAGATTTGTAACTTATATATATTACGTACAACTAGTTGACTGCCATTTCTTCATCTTCAACATTTTCTTGGTTGAGCTATCATGTGCATGCGTAGTTAATTTCAAAAAGTAATATAAACAGGAACAATTGACTGACTAGAAAATGAGGAGAGTTGAACTTCTCTGGAGGACTTGTAGGGTCTTGCTAGCTAGAACAATTGTGGCACTAGCCAAGAAATTCATTTTGAAGGCATAGAAAATAGTGTATATTTATATGTTAATACCTTGTTGTCAAAATAATAGCATGTCAAAATATCTTACTGAGAGGCCTTATATCTTACTGGAAGCAAGTGTCCTTGCAAAAGACAGAATTAGATGGAGAATTATCGCTGCTTCAATATGATGGGCAATCTGGAAAGAGAAATTCCAGATGTTTAGAAGGCATAGAAAATAGGTGCATGACGTTAAACTTAACTGCATTTTGTTGTTATGTCATTGGTGTAATCAATTTTACTCATGTCTCTATAGTTGATGTTTTAGATTCAATATAAAAATAGAGTAATGGAGTCTGGAGTGAATATGCATATAAGGTTTGAGTACAACCCATGTACTTTTGTGATATAATACAAAGTTACCAAGTTAAAAAAAATATATCTTACAATAAGGTTCTCTCGTTTGTTGATCCGATGAGAATTAACAAGCAATAGAGCAATGTGGTGATATTTAGGGATAGATAATTAATTTTCTGCTCTAATGTTCTGCGAGCCGTGATAGTCCCTTTATCCGTTAGCTTTTTCAATCAAGTAATTCTCTATTCAATATAAATACTCAAGTTTGACCTTCTAACTCTGCAGCTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGT</genome_strand>
        <mrna_strand>AGATCCTGCACCAGCACGGTAACCACAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343655" ref_strand="+" ref_description="SGN-E343655 [cTOF-20-L14]">
      <seq>atttatatgtggagaatgaaagggtaaatggcaagaaggttttatggcaatggcagccgtaggtgcaacgaatattggttccattgagcttttcattgaaccaaccctgcgaacaaatagaccatggaagaagctgctacatccagaacctcctgaagaacaggtatacgaacctagaggcactggtgttttgctgaagaaaggagatgagctagcagctttcaatatgggttcaacagtggttctagtcttccaagctccgatctcacaaccttctgcagataaaagcacatcagcggaattcagtttttgtattaaaaagagagaccgtgtccgcatgggagaggccctgggcaggtggcatgattcctagttacaatatttgaattacaaaattaagggtggcaagtttgtattatagaaaagccttctagggaaacacttcacagttattactttttaggtagattgagtctgaaatggtcttcattctgttacaatagtatgaggcaactccattttaagggtcgtatgaatgagaactcangttttcttttgctcagaaactatacctagtcaatttgataactttgggatatgatgacacagacatatgcttgcggaacacagccctctcctcctcatggcctcggggagcaagggtaacaatttttttaccaagtgtttgaaagagtttcatttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8875" stop="12132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9197" g_stop="9261" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="88" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10043" g_stop="10165" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="211" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11336" g_stop="11835" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="709" r_length="498" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E343655" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9197" e_stop="9261"/>
          <exon e_start="10043" e_stop="10165"/>
          <exon e_start="11336" e_stop="11835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAGGTTAGCTACGATACTTGTGCGGTGGCAATACACTAATTTTGTATAACGAAGTGTGCCAGCTGTCTGGTTGGATACAAGTTTCCATTTTTTCCTCTCTAGACTATGTTCTTAGGAAGACTGACACTGGAGCTTTTTCATTATCAAGCTACTCAATTTGGGTAAACTCAGAAGGGGGGTTATTCCTTAATTAGTTGCACAAAAAATTGTCACCAGTCCTCTAGGCTTTTGCACTGTATGTACAATTGGATAGCTAGTGAAAATGTTATGGTTACCTTGTAGTTTCACAAAAAAAATATTCCTTATGGGTTAGTAATGACCTAAATAATTTGTCTATGCAAGTTGTGACATTTGAGTACATTGCCATGGCTATGACTTTTTTGTAGGCACCATGACTATGGAATTTAAAATGTAAAATAGTAAGGACAATTTCGTGAGCTAATTGTAATGCAGAAATAGAAAGATAAAAAATGGATTTGGATGACCAAAACAACAGGATAGGGATCAGCTTTTGTTTGGTCATGCAGTGTCACCAAGCTTGCCATTAGAAACCCTGGTAGTAACCAGGCTAGCTAAGCCCAACTGACTCATGTTACATGTAACTAATCAACCAAGAGATAATAATGAGTGTGGAAAACTCATAGGAAATCACAATTAGCTCATTGAAGACGAATCCACCAATAGTATGGATGAAGAACATGATAGATACCCATTGCAGATCCCACCACGGCCTTCTGCCTTCATTTGGTTCTAGTTGACTCAGTACTGTTTTCTGATGTTTCAGCTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAGGTATGATCCTTAAGTCTTGACGTTGTTTATGAACAGAAAAATGCATGCAACATTTCAATTTTGTGGCATCTTTGAGTATGCAAACTATCATGATAAAATCAAATTAATGGCAAGTTGATGATGTTTTTTGCATGAGAAAATCCTATTTTTGCAATGAACAGCAAAAATCTGTTCTTTCTTTTATATCATATGGTTTGTACTGCTCGTGAACAGACATGGTGTTGCAAGGATTTGTCGTTTGACTATTAGGCTTGTAATGCAGATAGCACCAAACTAGATTAATGATCTCCTCCTCTCTCTTTTTTCTTTTTTAAAATTAAATTTCCTCCTTTTTAATAAGATTTGTAACTTATATATATTACGTACAACTAGTTGACTGCCATTTCTTCATCTTCAACATTTTCTTGGTTGAGCTATCATGTGCATGCGTAGTTAATTTCAAAAAGTAATATAAACAGGAACAATTGACTGACTAGAAAATGAGGAGAGTTGAACTTCTCTGGAGGACTTGTAGGGTCTTGCTAGCTAGAACAATTGTGGCACTAGCCAAGAAATTCATTTTGAAGGCATAGAAAATAGTGTATATTTATATGTTAATACCTTGTTGTCAAAATAATAGCATGTCAAAATATCTTACTGAGAGGCCTTATATCTTACTGGAAGCAAGTGTCCTTGCAAAAGACAGAATTAGATGGAGAATTATCGCTGCTTCAATATGATGGGCAATCTGGAAAGAGAAATTCCAGATGTTTAGAAGGCATAGAAAATAGGTGCATGACGTTAAACTTAACTGCATTTTGTTGTTATGTCATTGGTGTAATCAATTTTACTCATGTCTCTATAGTTGATGTTTTAGATTCAATATAAAAATAGAGTAATGGAGTCTGGAGTGAATATGCATATAAGGTTTGAGTACAACCCATGTACTTTTGTGATATAATACAAAGTTACCAAGTTAAAAAAAATATATCTTACAATAAGGTTCTCTCGTTTGTTGATCCGATGAGAATTAACAAGCAATAGAGCAATGTGGTGATATTTAGGGATAGATAATTAATTTTCTGCTCTAATGTTCTGCGAGCCGTGATAGTCCCTTTATCCGTTAGCTTTTTCAATCAAGTAATTCTCTATTCAATATAAATACTCAAGTTTGACCTTCTAACTCTGCAGCTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGGAAACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTGAAAAGAGTTTCATTTAACATCT</genome_strand>
        <mrna_strand>GTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCANGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGG-AACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTG-AAAGAGTTTCATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298533" ref_strand="+" ref_description="SGN-E298533 [cLET-41-D23]">
      <seq>ccgcatgggagaggccctgggcaggtggcatgattcctagttacaatatttgaattacaaaattaagggtggcaagtttgtattatagaaaagccttctagggaaacacttcacagttattactttttaggtagattgagtctgaaatggtcttcattctgttacaatagtatgaggcaactccattttaagggtcgtatgaatgagaactcaggttttcttttgctcagaaactatacctagtcaatttgataactttgggatatgatgacacagacatatgcttgcggaaacacagccctctcctcctcatggcctcggggagcaagggtaacaatttttttaccaagtgtttgaaaagagtttcatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11158" stop="12132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11458" g_stop="11835" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E298533" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298533" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11458" e_stop="11835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGGAAACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTGAAAAGAGTTTCATTTAACATCT</genome_strand>
        <mrna_strand>CCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGGAAACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTGAAAAGAGTTTCATTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E746681" ref_strand="+" ref_description="SGN-E746681 [GI|52355223]">
      <seq>gggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttggtgccaacattttggcagctggcccattcagtggtggatctatgaacccagcacgatcatttgggccagctgtcgttgctggagacttttctcagaactggatttactgggtcggaccactcattggtggaggattggctgggtttatttatggagatgtctttattggatgccacacaccacttccaacctcagaagactatgcttagaacaaagaagaaagaacaagtcttcaacagtgttttctttcagtgtgttttcaaaaatgcaatgttgattttaatttaagctttgtatattctgttacgcaagaagtttgtttccaatgaaatatcatgtttggttcattttgacaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18397" stop="17049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18097" g_stop="18033" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17869" g_stop="17349" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="587" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="606"/>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E746681" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18097" e_stop="18033"/>
          <exon e_start="17869" e_stop="17349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGCCAGCTGTCGTTGCTGGAGACTTTTCTCAGAACTGGATTTACTGGGTCGGACCACTCATTGGTGGAGGATTGGCTGGGTTTATTTATGGAGATGTCTTTATTGGATGCCACACACCACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTC-GTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTACGCAAGAAGTTTGTTTCCAATGAAATATCATGTTTGGTTCATTTTGACAA</genome_strand>
        <mrna_strand>GGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGCCAGCTGTCGTTGCTGGAGACTTTTCTCAGAACTGGATTTACTGGGTCGGACCACTCATTGGTGGAGGATTGGCTGGGTTTATTTATGGAGATGTCTTTATTGGATGCCACACACCACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCAGTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTACGCAAGAAGTTTGTTTCCAATGAAATATCATGTTTGGTTCATTTTGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E302736" ref_strand="+" ref_description="SGN-E302736 [cLEY-1-E9]">
      <seq>cacttccaacctcagaagactatgcttagaacaaagaagaaagaacaagtcttcaacagtgttttctttcgtgtgttttcaaaaatgcaatgttgattttaatttaagctttgtatattctgttacgcaagaagtttgtttccaatgaaatatcatgtttggttcattttgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17823" stop="17049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17523" g_stop="17352" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="173" polyA_stop="191"/>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E302736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>172</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17523" e_stop="17352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCGTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTACGCAAGAAGTTTGTTTCCAATGAAATATCATGTTTGGTTCATTTTGA</genome_strand>
        <mrna_strand>CACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCGTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTACGCAAGAAGTTTGTTTCCAATGAAATATCATGTTTGGTTCATTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304842" ref_strand="+" ref_description="SGN-E304842 [cLEX-10-L22]">
      <seq>ttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttggtgccaacattttggcagctggcccattcagtggtggatctatgaacccagcacgatcatttgggccagctgtcgttgctggagacttttctcagaactggatttactgggtcggaccactcattggtggaggattggctgggtttatttatggagatgtctttattggatgccacacaccacttccaacctcagaagactatgcttagaacaaagaagaaagaacaagtcttcaacagtgttttctttcgtgtgttttcaaaaatgcaatgttgattntaatttaagctttgtatattctgtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18382" stop="17099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18082" g_stop="18033" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17869" g_stop="17399" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="521" r_length="471" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E304842" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18082" e_stop="18033"/>
          <exon e_start="17869" e_stop="17399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGCCAGCTGTCGTTGCTGGAGACTTTTCTCAGAACTGGATTTACTGGGTCGGACCACTCATTGGTGGAGGATTGGCTGGGTTTATTTATGGAGATGTCTTTATTGGATGCCACACACCACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCGTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTA</genome_strand>
        <mrna_strand>TTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGCCAGCTGTCGTTGCTGGAGACTTTTCTCAGAACTGGATTTACTGGGTCGGACCACTCATTGGTGGAGGATTGGCTGGGTTTATTTATGGAGATGTCTTTATTGGATGCCACACACCACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCGTGTGTTTTCAAAAATGCAATGTTGATTNTAATTTAAGCTTTGTATATTCTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311371" ref_strand="+" ref_description="SGN-E311371 [cLEZ-18-D2]">
      <seq>aaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttggtgccaacattttggcagctggcccattcagtggtggatctatgaacccagcacgatcatttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18882" stop="17338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18582" g_stop="18442" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="392" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17638" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="624" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E311371" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18582" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGC</genome_strand>
        <mrna_strand>AAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E291983" ref_strand="+" ref_description="SGN-E291983 [cLET-7-O4]">
      <seq>tgacttcaaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttggtgccaacattttggcagctggcccattcagtggtggatctatgaacccagcacgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18932" stop="17345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18632" g_stop="18442" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17645" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="667" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E291983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18632" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCA</genome_strand>
        <mrna_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303852" ref_strand="+" ref_description="SGN-E303852 [cLEX-4-C7]">
      <seq>tgacttcaaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttggtgccaacattttggcagctggcccattcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18932" stop="17373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18632" g_stop="18442" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="443" r_length="252" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17673" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="640" r_length="197" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E303852" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18632" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACT-AATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAG</genome_strand>
        <mrna_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311373" ref_strand="+" ref_description="SGN-E311373 [cLEZ-18-D6]">
      <seq>aaaaaagattataattgtgaagattgcctttggtagcattggcgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatggcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtaacaatagctgtggctcatgcattcgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgatggagtagttatggagatagtcatcacctttgcacttgtttacactgtttatgccacagcagcatatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttattgttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18881" stop="17403"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18581" g_stop="18442" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="391" r_length="251" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17703" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="558" r_length="167" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E311373" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18581" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGG</genome_strand>
        <mrna_strand>AAAAAAGATTATAATTGTGAAGATTGCCTTTGGTAGCATTGGCGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATGGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAACAATAGCTGTGGCTCATGCATTCGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGATGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTTTACACTGTTTATGCCACAGCAGCATATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308862" ref_strand="+" ref_description="SGN-E308862 [cLEY-23-A2]">
      <seq>tgacttcaaaattgaacttttaattgaagtacattctttagtgggagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccatctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18932" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18632" g_stop="18442" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17709" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="603" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E308862" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308862" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18632" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTAT</genome_strand>
        <mrna_strand>TGACTTCAAAATTGAACTTTTAATTGAAGTACATTCTTTAGTGGGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCATCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303535" ref_strand="+" ref_description="SGN-E303535 [cLEX-2-D8]">
      <seq>caaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccattgcaattggttttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18926" stop="17409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18626" g_stop="18442" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="436" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17709" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="597" r_length="161" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E303535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18626" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTAT</genome_strand>
        <mrna_strand>CAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E303457" ref_strand="+" ref_description="SGN-E303457 [cLEX-2-G9]">
      <seq>cttcaaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtggagctgagggagtagttatggagatagtcatcacctttgcacttgtctacactgtttatgccacagcagcagatcccaaaaagggctcacttggaaccattgcacccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18929" stop="17423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18629" g_stop="18442" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="439" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17723" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="586" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E303457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18629" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATT</genome_strand>
        <mrna_strand>CTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E308958" ref_strand="+" ref_description="SGN-E308958 [cLEY-23-A14]">
      <seq>tgacttcaaaattgaacttttaatttaagtacattctttggggggagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaggtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcactaatggtttggctgttccaactcatggagttgctgctgggatgagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18932" stop="17532"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18632" g_stop="18442" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18033" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="442" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17869" g_stop="17832" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="480" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E308958" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308958" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18632" e_stop="18442"/>
          <exon e_start="18283" e_stop="18033"/>
          <exon e_start="17869" e_stop="17832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTGGTATGTTGTTTCACTATGAACATACTATTGAATTAATTAAATAGACTCTAATGGGCGACCGCGACCGTGTTGTACTAGGCTTATAAGCTGATCAAATTAGGACTATTCTTTTCAGCTACTTATAATCTCCTAACCAAACGGGATCGTTATTGGATTTTTGCAGGCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGG</genome_strand>
        <mrna_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTGGGGGGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG...................................................................................................................................................................GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E304884" ref_strand="+" ref_description="SGN-E304884 [cLEX-10-C20]">
      <seq>tgacttcaaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtagcaatagctgtggctcatgcatttgcattgtttgttggggtttccatggcagctaacatctcaagtggacatttgaatccagctgtcactctgggattggctgttggtggaaacatcaccatcttgactggcttattctactgggttgctcaattacttggctccactgttgcttgcctcctccttaaatatgtcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18932" stop="17743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18632" g_stop="18442" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="191" r_length="191" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18043" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="432" r_length="241" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E304884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18632" e_stop="18442"/>
          <exon e_start="18283" e_stop="18043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCAC</genome_strand>
        <mrna_strand>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAAGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E337428" ref_strand="+" ref_description="SGN-E337428 [cTOE-18-J15]">
      <seq>ttcaaaattgaacttttaatttaagtacattctttagtgagagcccaaaaaaagaaaaaaatggtgaagattgcctttggtagcattggtgactctttaagtgttgggtcattgaaggcttacttagctgagtttattgccactctactctttgtatttgctggtgttggatctgctatagcttttaataagttgacttcaggtgcagctcttgatccagctggtctagtaacaatagctggggctcatgcatttgcattgtttgttggggtttccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="18928" stop="17892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18628" g_stop="18442" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18283" g_stop="18192" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="279" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E337428" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18628" e_stop="18442"/>
          <exon e_start="18283" e_stop="18192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTAGTAAGTCACATTTTCCCAACGTTATACACGTTATTTATTTGTGCATATCTATAAAATGTTATTTTCACGACTTGAACGTGTGACAATTTGATCACATGGAAACGAGACAATCTTTGTCATAATATAGAGTATTAATGTAATTTTTCCTTTTTTTGCAGATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATG</genome_strand>
        <mrna_strand>TTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA..............................................................................................................................................................ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAACAATAGCTGGGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E288476" ref_strand="+" ref_description="SGN-E288476 [cLES-8-K23]">
      <seq>aaaagctgtcacactcgtgactccacatttgagaacgctccacagtgtgcgagatttgtgaaaccagctcctctgcttcttctgctggggaattattcaacattcaacagatgtaaagaattgattttgagttttcttattgatcagtctacccgatttgaactggggaaaaaaggatttgcacaaggagtgaattcaatcgtttttagtggctcttggacggccaacaccatttatatagacagcagagtagtgggcacagctctctttgtatgtgatgctgattacctgtccattccctgccgtgagttgatagtatgagagcaaaaggtatcataaattcaaaattaagtagctgtagatatgggtgtggcgaaagtttggaggtatagttgtggggtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="-" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34036" stop="33032"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33736" g_stop="33332" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="-" ref_id="SGN-E288476" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33736" e_stop="33332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGCTGTCACACTCGTGACTCCACATTTGAGAACGCTCCACAGTGTGCGAGATTTGTGAAACCAGCTCCTCTGCTTCTTCTGCTGGGGAATTATTCAACATTCAACAGATGTAAAGAATTGATTTTGAGTTTTCTTATTGATCAGTCTACCCGATTTGAACTGGGGAAAAAAGGATTTGCACAAGGAGTGAATTCAATCGTTTTTAGTGGCTCTTGGACGGCCAACACCATTTATATAGACAGCAGAGTAGTGGGCACAGCTCTCTTTGTATGTGATGCTGATTACCTGTCCATTCCCTGCCGTGAGTTGATAGTATGAGAGCAAAAGGTATCATAAATTCAAAATTAAGTAGCTGTAGATATGGGTGTGGCGAAAGTTTGGAGGTATAGTTGTGGGGTATTG</genome_strand>
        <mrna_strand>AAAAGCTGTCACACTCGTGACTCCACATTTGAGAACGCTCCACAGTGTGCGAGATTTGTGAAACCAGCTCCTCTGCTTCTTCTGCTGGGGAATTATTCAACATTCAACAGATGTAAAGAATTGATTTTGAGTTTTCTTATTGATCAGTCTACCCGATTTGAACTGGGGAAAAAAGGATTTGCACAAGGAGTGAATTCAATCGTTTTTAGTGGCTCTTGGACGGCCAACACCATTTATATAGACAGCAGAGTAGTGGGCACAGCTCTCTTTGTATGTGATGCTGATTACCTGTCCATTCCCTGCCGTGAGTTGATAGTATGAGAGCAAAAGGTATCATAAATTCAAAATTAAGTAGCTGTAGATATGGGTGTGGCGAAAGTTTGGAGGTATAGTTGTGGGGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549079" ref_strand="+" ref_description="SGN-E549079 [TUS-67-B18]">
      <seq>tagttcagaacaattagcactactagagacttgtgacatggttctctggctttctctttcaattaagattgaatatgttttgttcaatgaaggtagaggtatcatcatcaatatatgtcctctagcttggtcatatgagtcattcaaccccataagaaactgaagtaacttctgattgtgtacaaatttcacaaattctcttgaatttacacactcacaacttggaacaggagttagactatcatattctacccatagttcacgtaatctagagaaatatgttgaaattgaactagtaccttgactcacagtggcaatttctttgtgtagttggaagatacgagatccatcaactttatcatatcgttcagccagatctttccatacagatgcaacatttgtagagtaaacaatacctccaagtaactcttttgaaacacaattcatgatccaagataatacaatcgcattgcatctttcccacaggtttaccagatttggaccatatgcttcctttttacgtgaaccatcaataaatcccaacttatttcgacctataattgcaatctttaatgctcgactccatagtgagtagttatcagctccagtcaattgaattgaactgagcaatacaccagaattgtcaatggtgttcaagaacagaggatgattatggcttagtttttccggcagctcgttatcaactgttgccatggattcgtctgttgcttatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46842" stop="48174"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47142" g_stop="47872" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="731" r_length="731" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E549079" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549079" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47142" e_stop="47872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTCAGAACAATTAGCACTACTAGAGACTTGTGACATGGTTCTTTGGCTTTCTCTTTCAATTAAGATTGAATATGTTTTGTTCAATGAAGGTAGAGGTGTCATCATCAATATATGTCCTCTAGCTTGTTCATATGAGTCATTCAACCCCATAAGAAACTGAAGTAACTTCTGATTGTGTACAAATTTCACAAATTCTCTTGAATTTACACACTCACAACTTGGAACAGGAGTTAGACTATCATATTCTACCCATAGTTCACGTAATCTAGAGAAATATGTTGAAATTGAACTAGTACCTTGACTCACAGTGGCAATTTCTTTGTGTAGTTGGAAGATACGAGATCCATCAACTTTATCATATCTCTCAGCCAGATCTTTCCATACAGATGCAACATTTGTAGAGTAAACAATGCCTCCAAGTAACTCTTCCGAAACACAATTCATGATCCAAGATAATACAATTGCATTGCATCTTTCCCACAGATTCACCAGATTTGGACCATATGCTTCCTTTTGACACGAACCATCGATAAATCCCAACTTATTTCGACCTATAATTGCAATCTTTAATGCTCGACTCCACACTGAATAGTTATCGGCTCCAGTCAATTGAATTGAACTGAGCAATACACCAGAATTGTCAATGGTGTTCAAGAACAGAGGATGATTATGGCTTAGTTTTTCCGGCAGCTCATTATCAACTGTTGCCATGGATTCGTCTGTTGATT</genome_strand>
        <mrna_strand>TAGTTCAGAACAATTAGCACTACTAGAGACTTGTGACATGGTTCTCTGGCTTTCTCTTTCAATTAAGATTGAATATGTTTTGTTCAATGAAGGTAGAGGTATCATCATCAATATATGTCCTCTAGCTTGGTCATATGAGTCATTCAACCCCATAAGAAACTGAAGTAACTTCTGATTGTGTACAAATTTCACAAATTCTCTTGAATTTACACACTCACAACTTGGAACAGGAGTTAGACTATCATATTCTACCCATAGTTCACGTAATCTAGAGAAATATGTTGAAATTGAACTAGTACCTTGACTCACAGTGGCAATTTCTTTGTGTAGTTGGAAGATACGAGATCCATCAACTTTATCATATCGTTCAGCCAGATCTTTCCATACAGATGCAACATTTGTAGAGTAAACAATACCTCCAAGTAACTCTTTTGAAACACAATTCATGATCCAAGATAATACAATCGCATTGCATCTTTCCCACAGGTTTACCAGATTTGGACCATATGCTTCCTTTTTACGTGAACCATCAATAAATCCCAACTTATTTCGACCTATAATTGCAATCTTTAATGCTCGACTCCATAGTGAGTAGTTATCAGCTCCAGTCAATTGAATTGAACTGAGCAATACACCAGAATTGTCAATGGTGTTCAAGAACAGAGGATGATTATGGCTTAGTTTTTCCGGCAGCTCGTTATCAACTGTTGCCATGGATTCGTCTGTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E306021" ref_strand="+" ref_description="SGN-E306021 [cLEY-17-L14]">
      <seq>agttcagaacaattagcactactagagacttgtgacatggttctctggctttctctttcaattaagattgaatatgttttgttcaatgaaggtagaggtatcatcatcaatatatgtcctctagcttggtcatatgagtcattcaaccccataagaaactgaagtaacttctgattgtgtacaaatttcacaaattctcttgaatttacacactcacaacttggaacaggagttagactatcatattctacccatagttcacgtaatctagagaaatatgttgaaattgaactagtaccttgactcacagtggcaatttctttgtgtagttggaagatacgagatccatcaactttatcatatcgttcagccagatctttccatacagatgcaacatttgtagagtaaacaatacctccaagtaactcttttgaaacacaattcatgatccaagataatacaatcgcattgcatctttcccacaggtttaccagatttggaccatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46843" stop="47952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47143" g_stop="47652" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E306021" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47143" e_stop="47652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCAGAACAATTAGCACTACTAGAGACTTGTGACATGGTTCTTTGGCTTTCTCTTTCAATTAAGATTGAATATGTTTTGTTCAATGAAGGTAGAGGTGTCATCATCAATATATGTCCTCTAGCTTGTTCATATGAGTCATTCAACCCCATAAGAAACTGAAGTAACTTCTGATTGTGTACAAATTTCACAAATTCTCTTGAATTTACACACTCACAACTTGGAACAGGAGTTAGACTATCATATTCTACCCATAGTTCACGTAATCTAGAGAAATATGTTGAAATTGAACTAGTACCTTGACTCACAGTGGCAATTTCTTTGTGTAGTTGGAAGATACGAGATCCATCAACTTTATCATATCTCTCAGCCAGATCTTTCCATACAGATGCAACATTTGTAGAGTAAACAATGCCTCCAAGTAACTCTTCCGAAACACAATTCATGATCCAAGATAATACAATTGCATTGCATCTTTCCCACAGATTCACCAGATTTGGACCATATGCT</genome_strand>
        <mrna_strand>AGTTCAGAACAATTAGCACTACTAGAGACTTGTGACATGGTTCTCTGGCTTTCTCTTTCAATTAAGATTGAATATGTTTTGTTCAATGAAGGTAGAGGTATCATCATCAATATATGTCCTCTAGCTTGGTCATATGAGTCATTCAACCCCATAAGAAACTGAAGTAACTTCTGATTGTGTACAAATTTCACAAATTCTCTTGAATTTACACACTCACAACTTGGAACAGGAGTTAGACTATCATATTCTACCCATAGTTCACGTAATCTAGAGAAATATGTTGAAATTGAACTAGTACCTTGACTCACAGTGGCAATTTCTTTGTGTAGTTGGAAGATACGAGATCCATCAACTTTATCATATCGTTCAGCCAGATCTTTCCATACAGATGCAACATTTGTAGAGTAAACAATACCTCCAAGTAACTCTTTTGAAACACAATTCATGATCCAAGATAATACAATCGCATTGCATCTTTCCCACAGGTTTACCAGATTTGGACCATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E212161" ref_strand="+" ref_description="SGN-E212161 [cLEC-75-H2]">
      <seq>ttgtggaagaagagactaagcagaatataccagaaaatattcctttaacagccatgaagcctgataacttgcttgtggaagaagagactaagcagaagtcaccacaaaatattcctttaacagccatgaagcctgataacttgcttgtggaagaagagactaggcagaagtcaccacaaaatattcctttaacaaccatgaaacctgatgacttgcttgttgaagaagagacaaagcagaatccaccacaaaatattcctttaacagacatgaagcctgataacttgcttgcggaagaagagactcagcagaatccaccacaaaattttcctttaacagacatgaagcctgataacttgcttgtggaagaagagactcagcagaatccaccacaaaatatttcttcaacagacatgaagcctgataacttccttgtggaagaagagactcagcagaatccaccacaaaatattcctttagatactttatcttctgataataaattagtaacccaacagaaaaccaataatgcacaacaagctgatccacctaaagatgcaaatcgagatacgccggataagcccatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="60149" stop="61340"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60449" g_stop="61040" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E212161" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212161" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60449" e_stop="61040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGGAAGAAGAGACTAAGCAGAATATACCAGAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAAGCAGAAGTCACCACAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAGGCAGAAGTCACCACAAAATATTCCTTTAACAACCATGAAACCTGATGACTTGCTTGTTGAAGAAGAGACAAAGCAGAATCCACCACAAAATATTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGCGGAAGAAGAGACTCAGCAGAATCCACCACAAAATTTTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTTCTTCAACAGACATGAAGCCTGATAACTTCCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTCCTTTAGATACTTTATCTTCTGATAATAAATTAGTAACCCAACAGAAAACCAATAATGCACAACAAGCTGATCCACCTAAAGATGCAAATCGAGATACGCCGGATAAGCCCATGATGAA</genome_strand>
        <mrna_strand>TTGTGGAAGAAGAGACTAAGCAGAATATACCAGAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAAGCAGAAGTCACCACAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAGGCAGAAGTCACCACAAAATATTCCTTTAACAACCATGAAACCTGATGACTTGCTTGTTGAAGAAGAGACAAAGCAGAATCCACCACAAAATATTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGCGGAAGAAGAGACTCAGCAGAATCCACCACAAAATTTTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTTCTTCAACAGACATGAAGCCTGATAACTTCCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTCCTTTAGATACTTTATCTTCTGATAATAAATTAGTAACCCAACAGAAAACCAATAATGCACAACAAGCTGATCCACCTAAAGATGCAAATCGAGATACGCCGGATAAGCCCATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E728652" ref_strand="+" ref_description="SGN-E728652 [LA18CA10]">
      <seq>aaaagataggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagttctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatgcaagaatgtggccaaccaccaaacgatatagtgcagggacttgctccagacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70194" stop="73601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70494" g_stop="70585" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="140" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="432" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73301" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="726" r_length="294" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E728652" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70494" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTTGCTCCAGACTTT</genome_strand>
        <mrna_strand>AAAAGA-TAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGTTCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGGACTTGCTCCAGACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E336078" ref_strand="+" ref_description="SGN-E336078 [cTOE-12-C2]">
      <seq>aaagattaggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcagaaagagagtcttgatgcctagtgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70195" stop="71288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70495" g_stop="70585" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="140" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="70988" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="186" r_length="46" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E336078" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70495" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="70988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAG</genome_strand>
        <mrna_strand>AAAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGC-AGAAAGAGAG-TCTTG-ATGCCTAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347997" ref_strand="+" ref_description="SGN-E347997 [cTOF-31-E9]">
      <seq>aagattaggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagatctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70196" stop="73548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70496" g_stop="70585" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="139" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="431" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73248" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="672" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E347997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70496" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGC</genome_strand>
        <mrna_strand>AAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E293501" ref_strand="+" ref_description="SGN-E293501 [cLET-15-D12]">
      <seq>aagattaggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggacccgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaagacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70196" stop="73393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70496" g_stop="70585" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="139" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="431" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73093" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="517" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E293501" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70496" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAG</genome_strand>
        <mrna_strand>AAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACCCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E344741" ref_strand="+" ref_description="SGN-E344741 [cTOF-21-B15]">
      <seq>agattaggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagatctaaacannagttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70197" stop="73543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70497" g_stop="70585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="138" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="430" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73243" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="666" r_length="236" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E344741" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344741" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70497" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAA</genome_strand>
        <mrna_strand>AGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACANNAGTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E278536" ref_strand="-" ref_description="SGN-E278536 [cLEL-2-D24](-)">
      <seq>gcacgagaaagattaggttttggcaattgaggagacgcggagcttagaggcatgcatggctacggaccactctgatgacccagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaatgactcgcatgtctcggaagctcttgataagcttatagagcagacaagagaggctggttaaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70193" stop="71430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70499" g_stop="70585" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="98" r_length="87" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="147" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71130" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="338" r_length="191" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E278536" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278536" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="70499" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGAT</genome_strand>
        <mrna_strand>ATTAGGTTTTGGCAATTGAGGAGACGCGGAGCTTAGAGGCATGCATGGCTACGGACCACTCTGATGACCCAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAATGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTATAGAGCAGACAAGAGAGGCTGGTTAAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E709314" ref_strand="+" ref_description="SGN-E709314 [FA51BF01]">
      <seq>cggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagttctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatgcaagaatgtggccaaccaccaaacgatatagtgcaggaacttgctccagactttgatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70203" stop="73609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70502" g_stop="70585" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="133" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="425" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73309" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="727" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E709314" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E709314" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70502" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTTGCTCCAGACTTTGATATATC</genome_strand>
        <mrna_strand>CGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGTTCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTTGCTCCAGACTTTGATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343822" ref_strand="+" ref_description="SGN-E343822 [cTOF-12-C10]">
      <seq>aggttttggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagatctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70202" stop="73547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70502" g_stop="70585" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="133" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="425" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73247" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="426" r_stop="665" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E343822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70502" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATG</genome_strand>
        <mrna_strand>AGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E295206" ref_strand="+" ref_description="SGN-E295206 [cLET-20-H18]">
      <seq>ttttttcaatagaggagacgcggagcttgggggcatccatggctacggaccactctgatgatttanaccaacttcttgacagtgctttggacgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggacccgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcacgacatggagtctattgttgagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70205" stop="73392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70505" g_stop="70585" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.505" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="130" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="422" r_length="292" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73092" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="507" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E295206" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70505" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAA</genome_strand>
        <mrna_strand>TTTTTTCAATAGAGGAGACGCGGAGCTTGGGGGCATCCATGGCTACGGACCACTCTGATGATTTANACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGACGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACCCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTTGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E373929" ref_strand="+" ref_description="SGN-E373929 [TUS-33-C23]">
      <seq>ggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagatctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatgcaagaatgtggccaaccaccaaacgatatagtgcaggaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70209" stop="73589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70509" g_stop="70585" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="126" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="418" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73289" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="700" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E373929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70509" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTT</genome_strand>
        <mrna_strand>GGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E300617" ref_strand="+" ref_description="SGN-E300617 [cLET-45-F1]">
      <seq>ggcaatagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70209" stop="71537"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70509" g_stop="70585" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="77" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="126" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="418" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E300617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70509" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG</genome_strand>
        <mrna_strand>GGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298378" ref_strand="+" ref_description="SGN-E298378 [cLET-41-P17]">
      <seq>gcaatataggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcggtacaggcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70210" stop="73462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70510" g_stop="70585" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="125" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="417" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73162" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="572" r_length="155" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E298378" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70510" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCA</genome_strand>
        <mrna_strand>GCAATATAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGGTACAGGCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E282166" ref_strand="+" ref_description="SGN-E282166 [cLES-4-B24]">
      <seq>tagaggagacgcggagcttagaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70214" stop="73372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70514" g_stop="70585" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="121" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="413" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73072" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="478" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E282166" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70514" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACC</genome_strand>
        <mrna_strand>TAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E698759" ref_strand="+" ref_description="SGN-E698759 [FA07CA07]">
      <seq>agaggcatccatggctacggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagcatgaacttatcagagttctaaacaaagtttatgaaactgagcccagcaacttcaacaaaattgttgagcttatgcaaaaaatgcaagaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70233" stop="73557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70533" g_stop="70585" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="102" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="394" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73257" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="644" r_length="250" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E698759" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70533" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTG</genome_strand>
        <mrna_strand>AGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGCATGAACTTATCAGAGTTCTAAACAAAGTTTATGAAACTGAGCCCAGCAACTTCAACAAAATTGTTGAGCTTATGCAAAAAATGCAAGAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E251080" ref_strand="+" ref_description="SGN-E251080 [cLEG-17-I16]">
      <seq>ggaccactctgatgatttagaccaacttcttgacagtgctttggatgattttcagagcctcaatctcactactgcttctcaaagaaatggggatggagagggcaagaaagagagttcttgtatgcctagtgaggttcaagggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70251" stop="73415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70551" g_stop="70585" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.505" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70789" g_stop="70837" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="84" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.902" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70940" g_stop="71231" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="376" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="73008" g_stop="73115" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="484" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E251080" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251080" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70551" e_stop="70585"/>
          <exon e_start="70789" e_stop="70837"/>
          <exon e_start="70940" e_stop="71231"/>
          <exon e_start="73008" e_stop="73115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACCACTCTGATGATTTAGACCAACTTCTTGACAGTAAGTAGCAAACACCCTTTTACCCATTTCGACCAATTTATTTCTATTAACCTGTTTCTTGCCTATATAGTCAGTTGCTTTGGAGTGAATACAGTGTTTGATATTAATGTTTTTTTTCACACCGAAAGCAACAGTTATGAGGTAAGTGTTTGATTTTGAGGAGAAGATTGAATTGATTTTGATTGGAAATTCATTATTTTTAGGTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAGGTTTTTTCTGCTTTCTCTTGTGGCATGTAAATCTTTACTTATGTTTTAGCTAATGGGGTTGAATTTTGAGCTGTGATTGAAAAGGGTTGATTTTGATTGTAGAAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGAC</genome_strand>
        <mrna_strand>GGACCACTCTGATGATTTAGACCAACTTCTTGACA...........................................................................................................................................................................................................GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG......................................................................................................AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E275331" ref_strand="+" ref_description="SGN-E275331 [cLEN-9-P12]">
      <seq>gggcttgggatgtcgttacccaatttgaaagctaagaataaagggaagcaaaaggctgccaaggaggtgaaggactcgcatgtctcggaagctcttgataagcttagagagcagacaagagaggctgttaaaggattggaatcagtggcagggccaagacccagtgtggagaactttggaagtgatccaatgatggaggattgggtcaaacagtttgaggagctggctggttctcaggacatggagtctattgtagagaccatgatgcagcagcttctttcaaaggaaattcttcatgaacctatgagagaaattggagaaagatatccaaaatggttggaagacaataaagccaagttaagcggtgaagaatatgatcgttacaggcagcagtatgaacttatcagagatctaaacaaagtttatgaaactgagccaagcaacttcaacaaaattgttgagcttatgcagaaaatgcaagaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLe0123G17-KIiuU/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C06SLe0123G17.1" temp_strand="+" temp_description="C06SLe0123G17.1  AC211082.1 htgs_phase:1 submitted_to_sgn_as:C06SLe0123G17 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="70695" stop="73555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70995" g_stop="71231" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73008" g_stop="73255" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="485" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLe0123G17.1" gen_strand="+" ref_id="SGN-E275331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLe0123G17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70995" e_stop="71231"/>
          <exon e_start="73008" e_stop="73255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAGGTATATTTCTTATGCTTTTTTAATGTTTAAGTTTGTTGCTTTTTTCTCTTTAGTTCTTTCTAATGAATAGTGGCCCATTTTGTGGGTTTATACTGGTGTATGTTTTGTATGGAACGGTGAATATTGAAACTGCAAAATATCCATCTCTTGTGAAGCTTCATAGTTGAGTGTGAAGTCCCTTTCAGAAAATTTGTATAATGATCGAGACATTTGGTTCTCCTACATATGGATGTTCGGGAAAGGGAGGGTGATGAGGAAAGAGGATGTTAATATATTGATATAGTTAAGAGAAAGCATTTTGCTTCATTATGAACATAATTAATATTTTCAGCTGACTAAATGATTGCTTCTATGCATGGGAAACTTTTGGTGATGAATTGATGTAAGATCTCAAGGCTTTTCAATGATTTTAAACATTCTGCAGATTGTGGAAGTTGTTGTAGTCTTGTTTTTAGTTGGCTTGTTAAGTATGTTTGGACCAACATATACTGTATAAATCAGTTCGAATCGCATATGTTGATCTGTCCTAATCAAAAATAAAATAAAATTGCATATGTAGATCAGTGGACTAAGGAAGCTGAATGAAACTTCTTGTTCCAAAGAATGAATTTCATTAAATTGTTTGGTTTTGTTGACTGAATCCTCCAAAGTAGAGAACTGCCACACTTCTAAAGACCCTTTGGAGGAACCTATCCAGGACGTGCCCCTTTCAAAGCCTATTACATTCTTAGGTCCTGTTTCCTCTACTTTGGGATTTCTCTGCTTAGGATTTTGGATATCATTATTGATTTATATGCTACTTTACTTTTCAATATCTAGCTGTTTGAATAGCTTGTTTTTCCTGGTAAGGAAATTGTTCTGGTTATGAAGGTTCAGCTTTGGCTAGATCTCTGTTTCATCTTCTTGATTCCTCCTACTTAATAACGCAAATGAAGTACAGTTATGGATCATATAAGAATAACGTAGGACTGTTAAGAGCAAAGCGCTGAGACAGCTTTCTCATTGGCTGGAGTGGGGGACAACATTGGAATGTTAATTACAACAGTCTTTTAAAAATAGAGGTGGACAATATTGAACATGATGAAACATTTGAATGCGTTGAATGAGAAATTAGAAAGACTCAATAGTTTTGTACTAATTGAATGGGAGGCTAGAAAGAGTTTGGTTGCTGTGCACTTTTGGATTAAGGTGTTATATGGTTTGGAATCTGCACTATTGGCTTGGCATAGGTTTCTTTGTCTATCAGAGCCATGAAAGGTGTTCACAGCTTGGATTTGCTTTGAAGTTTTGGTTACCTATAGTATGAAAGCTTCCAGTTGCCTTATTCTCTTTTTCTTTTCTGTTAATAAGTCAAATTGCCTCTCTATCTCCACGAGGTAGTGGTAAGGTCTGCGTACGCTATACCTGCTCAAACCCTACTTAGTGGGATTGCACTGGGTTTGTTGTTGTTAATAAGCCAAAATCATTCTATCAATTGCACCACCATTGTACCTCAGATAACACAACACGACTATTTTACTAAGCCTTTTAAAAGTCCATTGTACTATCTAAAACATAAAGAGATACCTTATGTACACCAAAAAGTACAAAAGAAATTTAGTAGCGAATAGCTCCTAAAATGTTCAATTCCTTTGTTTTCTGTTCATTTTCTGCGATCATCCAGAATGTCCATGTAGGGACTAAGCATTCTCTCTAGTGCATTTATTATTCTTATATGTTTCTTCTTCTAACTTGTTTGGAATGGATTTGTAACTATTTTGATTGACTAATTGCTAGGACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATG</genome_strand>
        <mrna_strand>GGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>43</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2343" PGL_stop="11835"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2343" e_stop="2547"/>
            <exon e_start="5243" e_stop="5331"/>
            <exon e_start="5484" e_stop="5534"/>
            <exon e_start="5643" e_stop="5708"/>
            <exon e_start="5778" e_stop="5838"/>
            <exon e_start="5993" e_stop="6102"/>
            <exon e_start="6207" e_stop="6460"/>
            <exon e_start="7018" e_stop="7124"/>
            <exon e_start="7793" e_stop="7860"/>
            <exon e_start="9184" e_stop="9261"/>
            <exon e_start="10043" e_stop="10165"/>
            <exon e_start="11336" e_stop="11835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.540" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.569" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2343" e_stop="2547" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.993">
            <gDNA_intron_boundary i_start="2548" i_stop="5242" i_length="2695"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5243" e_stop="5331" e_length="89"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5332" i_stop="5483" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5484" e_stop="5534" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="5535" i_stop="5642" i_length="108"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5643" e_stop="5708" e_length="66"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.795">
            <gDNA_intron_boundary i_start="5709" i_stop="5777" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5778" e_stop="5838" e_length="61"/>
          </exon>
          <intron i_serial="5" don_prob="0.969" acc_prob="0.540">
            <gDNA_intron_boundary i_start="5839" i_stop="5992" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5993" e_stop="6102" e_length="110"/>
          </exon>
          <intron i_serial="6" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="6103" i_stop="6206" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="6207" e_stop="6460" e_length="254"/>
          </exon>
          <intron i_serial="7" don_prob="0.925" acc_prob="0.569">
            <gDNA_intron_boundary i_start="6461" i_stop="7017" i_length="557"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="7018" e_stop="7124" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.986" acc_prob="0.981">
            <gDNA_intron_boundary i_start="7125" i_stop="7792" i_length="668"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="7793" e_stop="7860" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.903" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7861" i_stop="9183" i_length="1323"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="9184" e_stop="9261" e_length="78"/>
          </exon>
          <intron i_serial="10" don_prob="0.799" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="10043" e_stop="10165" e_length="123"/>
          </exon>
          <intron i_serial="11" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170"/>
          </intron>
          <exon e_serial="12" e_score="0.986">
            <gDNA_exon_boundary e_start="11336" e_stop="11835" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2343" stop="2547"/>
              <exon start="5243" stop="5331"/>
              <exon start="5484" stop="5534"/>
              <exon start="5643" stop="5708"/>
              <exon start="5778" stop="5838"/>
              <exon start="5993" stop="6102"/>
              <exon start="6207" stop="6234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2353" stop="2547"/>
              <exon start="5243" stop="5331"/>
              <exon start="5484" stop="5534"/>
              <exon start="5643" stop="5708"/>
              <exon start="5778" stop="5838"/>
              <exon start="5993" stop="6102"/>
              <exon start="6207" stop="6460"/>
              <exon start="7018" stop="7124"/>
              <exon start="7793" stop="7860"/>
              <exon start="9184" stop="9261"/>
              <exon start="10043" stop="10165"/>
              <exon start="11336" stop="11690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2356" stop="2547"/>
              <exon start="5243" stop="5331"/>
              <exon start="5484" stop="5534"/>
              <exon start="5643" stop="5708"/>
              <exon start="5778" stop="5838"/>
              <exon start="5993" stop="6102"/>
              <exon start="6207" stop="6390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2357" stop="2547"/>
              <exon start="5243" stop="5331"/>
              <exon start="5484" stop="5534"/>
              <exon start="5643" stop="5708"/>
              <exon start="5778" stop="5838"/>
              <exon start="5993" stop="6032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290095" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6095" stop="6102"/>
              <exon start="6207" stop="6460"/>
              <exon start="7018" stop="7124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6096" stop="6102"/>
              <exon start="6207" stop="6460"/>
              <exon start="7018" stop="7124"/>
              <exon start="7793" stop="7820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6360" stop="6460"/>
              <exon start="7018" stop="7124"/>
              <exon start="7793" stop="7860"/>
              <exon start="9184" stop="9261"/>
              <exon start="10043" stop="10165"/>
              <exon start="11336" stop="11699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E543294" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9197" stop="9261"/>
              <exon start="10043" stop="10165"/>
              <exon start="11336" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11458" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTCAGAAATTTAAACCCTGACAAAGAAGAAGATGAAATTTAGGGCTTCTCAGAGAATTCCTTGCTTCACTTACAATGGACGCTTCAGTCATCTACATGCGCAGCGTTTCCATTTCACTACCTTTCTTCGTAAGGTACAAGCCACTGAAGCTCGAGCTTCGCTTAATCGTGGCGGCAGTAGTAGTAACAGCAGCTCTCAGG : GTAACACTCTTTTGTTGCCTGGTGCAACAGTCGCAACTATAGTTATGCTTGGTCTTCTCCATGCTCGACGTCTCTATGATGATCAGAAG : ATTGAAGACGCAAGAGAGAAAGGAATTTTAGAATTCCAGCCTGATGTAAAG : GCTACTTTCATGAGATTACTTCCTCTACGCTCCATCTCTAGATTCTGGGGTACCTTGACCAATGTG : GAACTCCCGATGTGGCTGCGCCCTTCTGTGTATAAAGGATGGGCTAGAGCATTTCATTCAA : ACTTGGAAGAAGTAGCACTGCCTTTGGAAGAATATGCATCTTTACGGGAGTTCTTTGTCAGAAGATTGAAAGAGGGTACCCGACCTATTGATCCGGATCCCTGTTGTCTG : ATTAGTCCAGTTGATGGAACTGTTCTACAATTCGGAGAGTTGAAAGAAGTTGGGGCTATGATTGAGCAAGTCAAAGGATTTTCTTATTCTGTTTCTTCGCTTCTTGGTGCCAGCTCCCTCCTTCCCATGAATGTGGTTGATGACAACACAAATCAAGATGGTGGGCAAGAAGGTTCTATGGATGATACGAATCAGAAGTCCTGGTGGAGAGTTTCATTGGCTTCTCCTAAAGTTCGAGATCCTGCACCAGCACG : CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG : GTCGTCTCTTTCCCATGAATGAACGAGCTACGAGGACAATAAGAAATTTATATGTGGAGAATGAAAGG : GTTGTGCTTGAAGGTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG : CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG : CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGGAAACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTGAAAAGAGTTTCATTTAACATCT</gDNA_template>
            <first_frame> Q  N  S  E  I  *  T  L  T  K  K  K  M  K  F  R  A  S  Q  R  I  P  C  F  T  Y  N  G  R  F  S  H  L  H  A  Q  R  F  H  F  T  T  F  L  R  K  V  Q  A  T  E  A  R  A  S  L  N  R  G  G  S  S  S  N  S  S  S  Q   : G  N  T  L  L  L  P  G  A  T  V  A  T  I  V  M  L  G  L  L  H  A  R  R  L  Y  D  D  Q  K  :  I  E  D  A  R  E  K  G  I  L  E  F  Q  P  D  V  K  :  A  T  F  M  R  L  L  P  L  R  S  I  S  R  F  W  G  T  L  T  N  V  :  E  L  P  M  W  L  R  P  S  V  Y  K  G  W  A  R  A  F  H  S   : N  L  E  E  V  A  L  P  L  E  E  Y  A  S  L  R  E  F  F  V  R  R  L  K  E  G  T  R  P  I  D  P  D  P  C  C  L  :  I  S  P  V  D  G  T  V  L  Q  F  G  E  L  K  E  V  G  A  M  I  E  Q  V  K  G  F  S  Y  S  V  S  S  L  L  G  A  S  S  L  L  P  M  N  V  V  D  D  N  T  N  Q  D  G  G  Q  E  G  S  M  D  D  T  N  Q  K  S  W  W  R  V  S  L  A  S  P  K  V  R  D  P  A  P  A  R :   P  M  K  G  L  F  Y  C  V  I  Y  L  S  P  G  D  Y  H  R  I  H  S  P  A  D  W  N  V  L  G  R  R  H  F  S   : G  R  L  F  P  M  N  E  R  A  T  R  T  I  R  N  L  Y  V  E  N  E  R  :  V  V  L  E  G  K  W  Q  E  G  F  M  A  M  A  A  V  G  A  T  N  I  G  S  I  E  :  L  F  I  E  P  T  L  R  T  N  R  P  W  K  K  L  L  H  P  E  P  P  E  E  Q  V  Y  E  P  R  G  T  G  V  L  L  K  K  G  D  E  :  L  A  A  F  N  M  G  S  T  V  V  L  V  F  Q  A  P  I  S  Q  P  S  A  D  K  S  T  S  A  E  F  S  F  C  I  K  K  R  D  R  V  R  M  G  E  A  L  G  R  W  H  D  S  *  L  Q  Y  L  N  Y  K  I  K  G  G  K  F  V  L  *  K  S  L  L  G  K  H  F  T  V  I  T  F  *  V  D  *  V  *  N  G  L  H  S  V  T  I  V  *  G  N  S  I  L  R  V  V  *  M  R  T  Q  V  F  F  C  S  E  T  I  P  S  Q  F  D  N  F  G  I  *  *  H  R  H  M  L  A  E  T  Q  P  S  P  P  H  G  L  G  E  Q  G  *  Q  F  F  Y  Q  V  F  E  K  S  F  I  *  H   </first_frame>
            <second_frame>  K  I  Q  K  F  K  P  *  Q  R  R  R  *  N  L  G  L  L  R  E  F  L  A  S  L  T  M  D  A  S  V  I  Y  M  R  S  V  S  I  S  L  P  F  F  V  R  Y  K  P  L  K  L  E  L  R  L  I  V  A  A  V  V  V  T  A  A  L  R  :  V  T  L  F  C  C  L  V  Q  Q  S  Q  L  *  L  C  L  V  F  S  M  L  D  V  S  M  M  I  R  R :   L  K  T  Q  E  R  K  E  F  *  N  S  S  L  M  *  R :   L  L  S  *  D  Y  F  L  Y  A  P  S  L  D  S  G  V  P  *  P  M  W :   N  S  R  C  G  C  A  L  L  C  I  K  D  G  L  E  H  F  I  Q  :  T  W  K  K  *  H  C  L  W  K  N  M  H  L  Y  G  S  S  L  S  E  D  *  K  R  V  P  D  L  L  I  R  I  P  V  V  * :   L  V  Q  L  M  E  L  F  Y  N  S  E  S  *  K  K  L  G  L  *  L  S  K  S  K  D  F  L  I  L  F  L  R  F  L  V  P  A  P  S  F  P  *  M  W  L  M  T  T  Q  I  K  M  V  G  K  K  V  L  W  M  I  R  I  R  S  P  G  G  E  F  H  W  L  L  L  K  F  E  I  L  H  Q  H   : A  Q  *  K  V  S  F  T  V  *  F  T  *  V  L  E  I  I  I  A  Y  T  H  Q  L  I  G  M  F  L  A  V  D  I  S  L  :  V  V  S  F  P  *  M  N  E  L  R  G  Q  *  E  I  Y  M  W  R  M  K  G :   L  C  L  K  V  N  G  K  K  V  L  W  Q  W  Q  P  *  V  Q  R  I  L  V  P  L  S :   F  S  L  N  Q  P  C  E  Q  I  D  H  G  R  S  C  Y  I  Q  N  L  L  K  N  R  Y  T  N  L  E  A  L  V  F  C  *  R  K  E  M  S :   *  Q  L  S  I  W  V  Q  Q  W  F  *  S  S  K  L  R  S  H  N  L  L  Q  I  K  A  H  Q  R  N  S  V  F  V  L  K  R  E  T  V  S  A  W  E  R  P  W  A  G  G  M  I  P  S  Y  N  I  *  I  T  K  L  R  V  A  S  L  Y  Y  R  K  A  F  *  G  N  T  S  Q  L  L  L  F  R  *  I  E  S  E  M  V  F  I  L  L  Q  *  Y  E  A  T  P  F  *  G  S  Y  E  *  E  L  R  F  S  F  A  Q  K  L  Y  L  V  N  L  I  T  L  G  Y  D  D  T  D  I  C  L  R  K  H  S  P  L  L  L  M  A  S  G  S  K  G  N  N  F  F  T  K  C  L  K  R  V  S  F  N  I  </second_frame>
            <third_frame>   K  F  R  N  L  N  P  D  K  E  E  D  E  I  *  G  F  S  E  N  S  L  L  H  L  Q  W  T  L  Q  S  S  T  C  A  A  F  P  F  H  Y  L  S  S  *  G  T  S  H  *  S  S  S  F  A  *  S  W  R  Q  *  *  *  Q  Q  L  S  G :   *  H  S  F  V  A  W  C  N  S  R  N  Y  S  Y  A  W  S  S  P  C  S  T  S  L  *  *  S  E   : D  *  R  R  K  R  E  R  N  F  R  I  P  A  *  C  K   : G  Y  F  H  E  I  T  S  S  T  L  H  L  *  I  L  G  Y  L  D  Q  C   : G  T  P  D  V  A  A  P  F  C  V  *  R  M  G  *  S  I  S  F  K :   L  G  R  S  S  T  A  F  G  R  I  C  I  F  T  G  V  L  C  Q  K  I  E  R  G  Y  P  T  Y  *  S  G  S  L  L  S   : D  *  S  S  *  W  N  C  S  T  I  R  R  V  E  R  S  W  G  Y  D  *  A  S  Q  R  I  F  L  F  C  F  F  A  S  W  C  Q  L  P  P  S  H  E  C  G  *  *  Q  H  K  S  R  W  W  A  R  R  F  Y  G  *  Y  E  S  E  V  L  V  E  S  F  I  G  F  S  *  S  S  R  S  C  T  S  T  :  P  N  E  R  S  L  L  L  C  D  L  L  E  S  W  R  L  S  S  H  T  L  T  S  *  L  E  C  S  W  P  S  T  F  L  W :   S  S  L  S  H  E  *  T  S  Y  E  D  N  K  K  F  I  C  G  E  *  K   : G  C  A  *  R  *  M  A  R  R  F  Y  G  N  G  S  R  R  C  N  E  Y  W  F  H  *   : A  F  H  *  T  N  P  A  N  K  *  T  M  E  E  A  A  T  S  R  T  S  *  R  T  G  I  R  T  *  R  H  W  C  F  A  E  E  R  R  *   : A  S  S  F  Q  Y  G  F  N  S  G  S  S  L  P  S  S  D  L  T  T  F  C  R  *  K  H  I  S  G  I  Q  F  L  Y  *  K  E  R  P  C  P  H  G  R  G  P  G  Q  V  A  *  F  L  V  T  I  F  E  L  Q  N  *  G  W  Q  V  C  I  I  E  K  P  S  R  E  T  L  H  S  Y  Y  F  L  G  R  L  S  L  K  W  S  S  F  C  Y  N  S  M  R  Q  L  H  F  K  G  R  M  N  E  N  S  G  F  L  L  L  R  N  Y  T  *  S  I  *  *  L  W  D  M  M  T  Q  T  Y  A  C  G  N  T  A  L  S  S  S  W  P  R  G  A  R  V  T  I  F  L  P  S  V  *  K  E  F  H  L  T  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2361" stop="2547"/>
                    <exon start="5243" stop="5331"/>
                    <exon start="5484" stop="5534"/>
                    <exon start="5643" stop="5708"/>
                    <exon start="5778" stop="5838"/>
                    <exon start="5993" stop="6102"/>
                    <exon start="6207" stop="6460"/>
                    <exon start="7018" stop="7124"/>
                    <exon start="7793" stop="7860"/>
                    <exon start="9184" stop="9261"/>
                    <exon start="10043" stop="10165"/>
                    <exon start="11336" stop="11497"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1353</number_coding_nucleotides>
                  <number_encoded_amino_acids>451</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TLTKKKMKFRASQRIPCFTYNGRFSHLHAQRFHFTTFLRKVQATEARASLNRGGSSSNSSSQGNTLLLPGATVATIVMLGLLHARRLYDDQKIEDAREKGILEFQPDVKATFMRLLPLRSISRFWGTLTNVELPMWLRPSVYKGWARAFHSNLEEVALPLEEYASLREFFVRRLKEGTRPIDPDPCCLISPVDGTVLQFGELKEVGAMIEQVKGFSYSVSSLLGASSLLPMNVVDDNTNQDGGQEGSMDDTNQKSWWRVSLASPKVRDPAPARPMKGLFYCVIYLSPGDYHRIHSPADWNVLGRRHFSGRLFPMNERATRTIRNLYVENERVVLEGKWQEGFMAMAAVGATNIGSIELFIEPTLRTNRPWKKLLHPEPPEEQVYEPRGTGVLLKKGDELAAFNMGSTVVLVFQAPISQPSADKSTSAEFSFCIKKRDRVRMGEALGRWHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6443" e_stop="6470"/>
            <exon e_start="7018" e_stop="7124"/>
            <exon e_start="9197" e_stop="9261"/>
            <exon e_start="10043" e_stop="10165"/>
            <exon e_start="11336" e_stop="11835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.569" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.986" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6443" e_stop="6470" e_length="28"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.569">
            <gDNA_intron_boundary i_start="6471" i_stop="7017" i_length="547"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7018" e_stop="7124" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.830">
            <gDNA_intron_boundary i_start="7125" i_stop="9196" i_length="2072"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9197" e_stop="9261" e_length="65"/>
          </exon>
          <intron i_serial="3" don_prob="0.799" acc_prob="0.995">
            <gDNA_intron_boundary i_start="9262" i_stop="10042" i_length="781"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10043" e_stop="10165" e_length="123"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="0.986">
            <gDNA_intron_boundary i_start="10166" i_stop="11335" i_length="1170"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="11336" e_stop="11835" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6443" stop="6470"/>
              <exon start="7018" stop="7124"/>
              <exon start="9197" stop="9261"/>
              <exon start="10043" stop="10165"/>
              <exon start="11336" stop="11701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9197" stop="9261"/>
              <exon start="10043" stop="10165"/>
              <exon start="11336" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11458" stop="11835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298533" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGATCCTGCACCAGCACGGTAACCACAG : CCCAATGAAAGGTCTCTTTTACTGTGTGATTTACTTGAGTCCTGGAGATTATCATCGCATACACTCACCAGCTGATTGGAATGTTCTTGGCCGTCGACATTTCTCTG : GTAAATGGCAAGAAGGTTTTATGGCAATGGCAGCCGTAGGTGCAACGAATATTGGTTCCATTGAG : CTTTTCATTGAACCAACCCTGCGAACAAATAGACCATGGAAGAAGCTGCTACATCCAGAACCTCCTGAAGAACAGGTATACGAACCTAGAGGCACTGGTGTTTTGCTGAAGAAAGGAGATGAG : CTAGCAGCTTTCAATATGGGTTCAACAGTGGTTCTAGTCTTCCAAGCTCCGATCTCACAACCTTCTGCAGATAAAAGCACATCAGCGGAATTCAGTTTTTGTATTAAAAAGAGAGACCGTGTCCGCATGGGAGAGGCCCTGGGCAGGTGGCATGATTCCTAGTTACAATATTTGAATTACAAAATTAAGGGTGGCAAGTTTGTATTATAGAAAAGCCTTCTAGGGAAACACTTCACAGTTATTACTTTTTAGGTAGATTGAGTCTGAAATGGTCTTCATTCTGTTACAATAGTATGAGGCAACTCCATTTTAAGGGTCGTATGAATGAGAACTCAGGTTTTCTTTTGCTCAGAAACTATACCTAGTCAATTTGATAACTTTGGGATATGATGACACAGACATATGCTTGCGGAAACACAGCCCTCTCCTCCTCATGGCCTCGGGGAGCAAGGGTAACAATTTTTTTACCAAGTGTTTGAAAAGAGTTTCATTTAACATCT</gDNA_template>
            <first_frame> R  S  C  T  S  T  V  T  T   : A  Q  *  K  V  S  F  T  V  *  F  T  *  V  L  E  I  I  I  A  Y  T  H  Q  L  I  G  M  F  L  A  V  D  I  S  L  :  V  N  G  K  K  V  L  W  Q  W  Q  P  *  V  Q  R  I  L  V  P  L  S :   F  S  L  N  Q  P  C  E  Q  I  D  H  G  R  S  C  Y  I  Q  N  L  L  K  N  R  Y  T  N  L  E  A  L  V  F  C  *  R  K  E  M  S :   *  Q  L  S  I  W  V  Q  Q  W  F  *  S  S  K  L  R  S  H  N  L  L  Q  I  K  A  H  Q  R  N  S  V  F  V  L  K  R  E  T  V  S  A  W  E  R  P  W  A  G  G  M  I  P  S  Y  N  I  *  I  T  K  L  R  V  A  S  L  Y  Y  R  K  A  F  *  G  N  T  S  Q  L  L  L  F  R  *  I  E  S  E  M  V  F  I  L  L  Q  *  Y  E  A  T  P  F  *  G  S  Y  E  *  E  L  R  F  S  F  A  Q  K  L  Y  L  V  N  L  I  T  L  G  Y  D  D  T  D  I  C  L  R  K  H  S  P  L  L  L  M  A  S  G  S  K  G  N  N  F  F  T  K  C  L  K  R  V  S  F  N  I  </first_frame>
            <second_frame>  D  P  A  P  A  R  *  P  Q  :  P  N  E  R  S  L  L  L  C  D  L  L  E  S  W  R  L  S  S  H  T  L  T  S  *  L  E  C  S  W  P  S  T  F  L  W :   *  M  A  R  R  F  Y  G  N  G  S  R  R  C  N  E  Y  W  F  H  *   : A  F  H  *  T  N  P  A  N  K  *  T  M  E  E  A  A  T  S  R  T  S  *  R  T  G  I  R  T  *  R  H  W  C  F  A  E  E  R  R  *   : A  S  S  F  Q  Y  G  F  N  S  G  S  S  L  P  S  S  D  L  T  T  F  C  R  *  K  H  I  S  G  I  Q  F  L  Y  *  K  E  R  P  C  P  H  G  R  G  P  G  Q  V  A  *  F  L  V  T  I  F  E  L  Q  N  *  G  W  Q  V  C  I  I  E  K  P  S  R  E  T  L  H  S  Y  Y  F  L  G  R  L  S  L  K  W  S  S  F  C  Y  N  S  M  R  Q  L  H  F  K  G  R  M  N  E  N  S  G  F  L  L  L  R  N  Y  T  *  S  I  *  *  L  W  D  M  M  T  Q  T  Y  A  C  G  N  T  A  L  S  S  S  W  P  R  G  A  R  V  T  I  F  L  P  S  V  *  K  E  F  H  L  T  S </second_frame>
            <third_frame>   I  L  H  Q  H  G  N  H  S :   P  M  K  G  L  F  Y  C  V  I  Y  L  S  P  G  D  Y  H  R  I  H  S  P  A  D  W  N  V  L  G  R  R  H  F  S   : G  K  W  Q  E  G  F  M  A  M  A  A  V  G  A  T  N  I  G  S  I  E  :  L  F  I  E  P  T  L  R  T  N  R  P  W  K  K  L  L  H  P  E  P  P  E  E  Q  V  Y  E  P  R  G  T  G  V  L  L  K  K  G  D  E  :  L  A  A  F  N  M  G  S  T  V  V  L  V  F  Q  A  P  I  S  Q  P  S  A  D  K  S  T  S  A  E  F  S  F  C  I  K  K  R  D  R  V  R  M  G  E  A  L  G  R  W  H  D  S  *  L  Q  Y  L  N  Y  K  I  K  G  G  K  F  V  L  *  K  S  L  L  G  K  H  F  T  V  I  T  F  *  V  D  *  V  *  N  G  L  H  S  V  T  I  V  *  G  N  S  I  L  R  V  V  *  M  R  T  Q  V  F  F  C  S  E  T  I  P  S  Q  F  D  N  F  G  I  *  *  H  R  H  M  L  A  E  T  Q  P  S  P  P  H  G  L  G  E  Q  G  *  Q  F  F  Y  Q  V  F  E  K  S  F  I  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6445" stop="6470"/>
                    <exon start="7018" stop="7124"/>
                    <exon start="9197" stop="9261"/>
                    <exon start="10043" stop="10165"/>
                    <exon start="11336" stop="11497"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILHQHGNHSPMKGLFYCVIYLSPGDYHRIHSPADWNVLGRRHFSGKWQEGFMAMAAVGATNIGSIELFIEPTLRTNRPWKKLLHPEPPEEQVYEPRGTGVLLKKGDELAAFNMGSTVVLVFQAPISQPSADKSTSAEFSFCIKKRDRVRMGEALGRWHDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18632" PGL_stop="17349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18632" e_stop="18442"/>
            <exon e_start="18283" e_stop="18033"/>
            <exon e_start="17869" e_stop="17349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="18632" e_stop="18442" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="18441" i_stop="18284" i_length="158"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18283" e_stop="18033" e_length="251"/>
          </exon>
          <intron i_serial="2" don_prob="0.956" acc_prob="0.997">
            <gDNA_intron_boundary i_start="18032" i_stop="17870" i_length="163"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="17869" e_stop="17349" e_length="521"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18632" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18632" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18632" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308862" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18632" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308958" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18632" stop="18442"/>
              <exon start="18283" stop="18043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304884" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18629" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18628" stop="18442"/>
              <exon start="18283" stop="18192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337428" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18626" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18582" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18581" stop="18442"/>
              <exon start="18283" stop="18033"/>
              <exon start="17869" stop="17703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18097" stop="18033"/>
              <exon start="17869" stop="17349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18082" stop="18033"/>
              <exon start="17869" stop="17399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17523" stop="17352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302736" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGACTTCAAAATTGAACTTTTAATTTAAGTACATTCTTTAGTGAGAGCCCAAAAAAAGAAAAAAATGGTGAAGATTGCCTTTGGTAGCATTGGTGACTCTTTAAGTGTTGGGTCATTGAAGGCTTACTTAGCTGAGTTTATTGCCACTCTACTCTTTGTATTTGCTGGTGTTGGATCTGCTATAGCTTTTA : ATAAGTTGACTTCAGGTGCAGCTCTTGATCCAGCTGGTCTAGTAGCAATAGCTGTGGCTCATGCATTTGCATTGTTTGTTGGGGTTTCCATGGCAGCTAACATCTCAGGTGGACATTTGAATCCAGCTGTCACTCTGGGATTGGCTGTTGGTGGAAACATCACCATCTTGACTGGCTTATTCTACTGGGTTGCTCAATTACTTGGCTCCACTGTTGCTTGCCTCCTCCTTAAATATGTCACTAATGGTTTG : GCTGTTCCAACTCATGGAGTTGCTGCTGGGATGAGTGGAGCTGAGGGAGTAGTTATGGAGATAGTCATCACCTTTGCACTTGTCTACACTGTTTATGCCACAGCAGCAGATCCCAAAAAGGGCTCACTTGGAACCATTGCACCCATTGCAATTGGTTTTATTGTTGGTGCCAACATTTTGGCAGCTGGCCCATTCAGTGGTGGATCTATGAACCCAGCACGATCATTTGGGCCAGCTGTCGTTGCTGGAGACTTTTCTCAGAACTGGATTTACTGGGTCGGACCACTCATTGGTGGAGGATTGGCTGGGTTTATTTATGGAGATGTCTTTATTGGATGCCACACACCACTTCCAACCTCAGAAGACTATGCTTAGAACAAAGAAGAAAGAACAAGTCTTCAACAGTGTTTTCTTTCGTGTGTTTTCAAAAATGCAATGTTGATTTTAATTTAAGCTTTGTATATTCTGTTACGCAAGAAGTTTGTTTCCAATGAAATATCATGTTTGGTTCATTTTGACAA</gDNA_template>
            <first_frame> *  L  Q  N  *  T  F  N  L  S  T  F  F  S  E  S  P  K  K  E  K  N  G  E  D  C  L  W  *  H  W  *  L  F  K  C  W  V  I  E  G  L  L  S  *  V  Y  C  H  S  T  L  C  I  C  W  C  W  I  C  Y  S  F  * :   *  V  D  F  R  C  S  S  *  S  S  W  S  S  S  N  S  C  G  S  C  I  C  I  V  C  W  G  F  H  G  S  *  H  L  R  W  T  F  E  S  S  C  H  S  G  I  G  C  W  W  K  H  H  H  L  D  W  L  I  L  L  G  C  S  I  T  W  L  H  C  C  L  P  P  P  *  I  C  H  *  W  F   : G  C  S  N  S  W  S  C  C  W  D  E  W  S  *  G  S  S  Y  G  D  S  H  H  L  C  T  C  L  H  C  L  C  H  S  S  R  S  Q  K  G  L  T  W  N  H  C  T  H  C  N  W  F  Y  C  W  C  Q  H  F  G  S  W  P  I  Q  W  W  I  Y  E  P  S  T  I  I  W  A  S  C  R  C  W  R  L  F  S  E  L  D  L  L  G  R  T  T  H  W  W  R  I  G  W  V  Y  L  W  R  C  L  Y  W  M  P  H  T  T  S  N  L  R  R  L  C  L  E  Q  R  R  K  N  K  S  S  T  V  F  S  F  V  C  F  Q  K  C  N  V  D  F  N  L  S  F  V  Y  S  V  T  Q  E  V  C  F  Q  *  N  I  M  F  G  S  F  *  Q </first_frame>
            <second_frame>  D  F  K  I  E  L  L  I  *  V  H  S  L  V  R  A  Q  K  K  K  K  M  V  K  I  A  F  G  S  I  G  D  S  L  S  V  G  S  L  K  A  Y  L  A  E  F  I  A  T  L  L  F  V  F  A  G  V  G  S  A  I  A  F   : N  K  L  T  S  G  A  A  L  D  P  A  G  L  V  A  I  A  V  A  H  A  F  A  L  F  V  G  V  S  M  A  A  N  I  S  G  G  H  L  N  P  A  V  T  L  G  L  A  V  G  G  N  I  T  I  L  T  G  L  F  Y  W  V  A  Q  L  L  G  S  T  V  A  C  L  L  L  K  Y  V  T  N  G  L  :  A  V  P  T  H  G  V  A  A  G  M  S  G  A  E  G  V  V  M  E  I  V  I  T  F  A  L  V  Y  T  V  Y  A  T  A  A  D  P  K  K  G  S  L  G  T  I  A  P  I  A  I  G  F  I  V  G  A  N  I  L  A  A  G  P  F  S  G  G  S  M  N  P  A  R  S  F  G  P  A  V  V  A  G  D  F  S  Q  N  W  I  Y  W  V  G  P  L  I  G  G  G  L  A  G  F  I  Y  G  D  V  F  I  G  C  H  T  P  L  P  T  S  E  D  Y  A  *  N  K  E  E  R  T  S  L  Q  Q  C  F  L  S  C  V  F  K  N  A  M  L  I  L  I  *  A  L  Y  I  L  L  R  K  K  F  V  S  N  E  I  S  C  L  V  H  F  D   </second_frame>
            <third_frame>   T  S  K  L  N  F  *  F  K  Y  I  L  *  *  E  P  K  K  R  K  K  W  *  R  L  P  L  V  A  L  V  T  L  *  V  L  G  H  *  R  L  T  *  L  S  L  L  P  L  Y  S  L  Y  L  L  V  L  D  L  L  *  L  L  :  I  S  *  L  Q  V  Q  L  L  I  Q  L  V  *  *  Q  *  L  W  L  M  H  L  H  C  L  L  G  F  P  W  Q  L  T  S  Q  V  D  I  *  I  Q  L  S  L  W  D  W  L  L  V  E  T  S  P  S  *  L  A  Y  S  T  G  L  L  N  Y  L  A  P  L  L  L  A  S  S  L  N  M  S  L  M  V  W :   L  F  Q  L  M  E  L  L  L  G  *  V  E  L  R  E  *  L  W  R  *  S  S  P  L  H  L  S  T  L  F  M  P  Q  Q  Q  I  P  K  R  A  H  L  E  P  L  H  P  L  Q  L  V  L  L  L  V  P  T  F  W  Q  L  A  H  S  V  V  D  L  *  T  Q  H  D  H  L  G  Q  L  S  L  L  E  T  F  L  R  T  G  F  T  G  S  D  H  S  L  V  E  D  W  L  G  L  F  M  E  M  S  L  L  D  A  T  H  H  F  Q  P  Q  K  T  M  L  R  T  K  K  K  E  Q  V  F  N  S  V  F  F  R  V  F  S  K  M  Q  C  *  F  *  F  K  L  C  I  F  C  Y  A  R  S  L  F  P  M  K  Y  H  V  W  F  I  L  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18604" stop="18442"/>
                    <exon start="18283" stop="18033"/>
                    <exon start="17869" stop="17495"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VHSLVRAQKKKKMVKIAFGSIGDSLSVGSLKAYLAEFIATLLFVFAGVGSAIAFNKLTSGAALDPAGLVAIAVAHAFALFVGVSMAANISGGHLNPAVTLGLAVGGNITILTGLFYWVAQLLGSTVACLLLKYVTNGLAVPTHGVAAGMSGAEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWVGPLIGGGLAGFIYGDVFIGCHTPLPTSEDYA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33736" PGL_stop="33332"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33736" e_stop="33332"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33736" e_stop="33332" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33736" stop="33332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288476" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAGCTGTCACACTCGTGACTCCACATTTGAGAACGCTCCACAGTGTGCGAGATTTGTGAAACCAGCTCCTCTGCTTCTTCTGCTGGGGAATTATTCAACATTCAACAGATGTAAAGAATTGATTTTGAGTTTTCTTATTGATCAGTCTACCCGATTTGAACTGGGGAAAAAAGGATTTGCACAAGGAGTGAATTCAATCGTTTTTAGTGGCTCTTGGACGGCCAACACCATTTATATAGACAGCAGAGTAGTGGGCACAGCTCTCTTTGTATGTGATGCTGATTACCTGTCCATTCCCTGCCGTGAGTTGATAGTATGAGAGCAAAAGGTATCATAAATTCAAAATTAAGTAGCTGTAGATATGGGTGTGGCGAAAGTTTGGAGGTATAGTTGTGGGGTATTG</gDNA_template>
            <first_frame> K  S  C  H  T  R  D  S  T  F  E  N  A  P  Q  C  A  R  F  V  K  P  A  P  L  L  L  L  L  G  N  Y  S  T  F  N  R  C  K  E  L  I  L  S  F  L  I  D  Q  S  T  R  F  E  L  G  K  K  G  F  A  Q  G  V  N  S  I  V  F  S  G  S  W  T  A  N  T  I  Y  I  D  S  R  V  V  G  T  A  L  F  V  C  D  A  D  Y  L  S  I  P  C  R  E  L  I  V  *  E  Q  K  V  S  *  I  Q  N  *  V  A  V  D  M  G  V  A  K  V  W  R  Y  S  C  G  V  L </first_frame>
            <second_frame>  K  A  V  T  L  V  T  P  H  L  R  T  L  H  S  V  R  D  L  *  N  Q  L  L  C  F  F  C  W  G  I  I  Q  H  S  T  D  V  K  N  *  F  *  V  F  L  L  I  S  L  P  D  L  N  W  G  K  K  D  L  H  K  E  *  I  Q  S  F  L  V  A  L  G  R  P  T  P  F  I  *  T  A  E  *  W  A  Q  L  S  L  Y  V  M  L  I  T  C  P  F  P  A  V  S  *  *  Y  E  S  K  R  Y  H  K  F  K  I  K  *  L  *  I  W  V  W  R  K  F  G  G  I  V  V  G  Y   </second_frame>
            <third_frame>   K  L  S  H  S  *  L  H  I  *  E  R  S  T  V  C  E  I  C  E  T  S  S  S  A  S  S  A  G  E  L  F  N  I  Q  Q  M  *  R  I  D  F  E  F  S  Y  *  S  V  Y  P  I  *  T  G  E  K  R  I  C  T  R  S  E  F  N  R  F  *  W  L  L  D  G  Q  H  H  L  Y  R  Q  Q  S  S  G  H  S  S  L  C  M  *  C  *  L  P  V  H  S  L  P  *  V  D  S  M  R  A  K  G  I  I  N  S  K  L  S  S  C  R  Y  G  C  G  E  S  L  E  V  *  L  W  G  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33736" stop="33416"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSCHTRDSTFENAPQCARFVKPAPLLLLLGNYSTFNRCKELILSFLIDQSTRFELGKKGFAQGVNSIVFSGSWTANTIYIDSRVVGTALFVCDADYLSIPCRELIV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="47142" PGL_stop="47872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47142" e_stop="47872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="47142" e_stop="47872" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47142" stop="47872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549079" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47143" stop="47652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306021" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTTCAGAACAATTAGCACTACTAGAGACTTGTGACATGGTTCTTTGGCTTTCTCTTTCAATTAAGATTGAATATGTTTTGTTCAATGAAGGTAGAGGTGTCATCATCAATATATGTCCTCTAGCTTGTTCATATGAGTCATTCAACCCCATAAGAAACTGAAGTAACTTCTGATTGTGTACAAATTTCACAAATTCTCTTGAATTTACACACTCACAACTTGGAACAGGAGTTAGACTATCATATTCTACCCATAGTTCACGTAATCTAGAGAAATATGTTGAAATTGAACTAGTACCTTGACTCACAGTGGCAATTTCTTTGTGTAGTTGGAAGATACGAGATCCATCAACTTTATCATATCTCTCAGCCAGATCTTTCCATACAGATGCAACATTTGTAGAGTAAACAATGCCTCCAAGTAACTCTTCCGAAACACAATTCATGATCCAAGATAATACAATTGCATTGCATCTTTCCCACAGATTCACCAGATTTGGACCATATGCTTCCTTTTGACACGAACCATCGATAAATCCCAACTTATTTCGACCTATAATTGCAATCTTTAATGCTCGACTCCACACTGAATAGTTATCGGCTCCAGTCAATTGAATTGAACTGAGCAATACACCAGAATTGTCAATGGTGTTCAAGAACAGAGGATGATTATGGCTTAGTTTTTCCGGCAGCTCATTATCAACTGTTGCCATGGATTCGTCTGTTGATT</gDNA_template>
            <first_frame> *  F  R  T  I  S  T  T  R  D  L  *  H  G  S  L  A  F  S  F  N  *  D  *  I  C  F  V  Q  *  R  *  R  C  H  H  Q  Y  M  S  S  S  L  F  I  *  V  I  Q  P  H  K  K  L  K  *  L  L  I  V  Y  K  F  H  K  F  S  *  I  Y  T  L  T  T  W  N  R  S  *  T  I  I  F  Y  P  *  F  T  *  S  R  E  I  C  *  N  *  T  S  T  L  T  H  S  G  N  F  F  V  *  L  E  D  T  R  S  I  N  F  I  I  S  L  S  Q  I  F  P  Y  R  C  N  I  C  R  V  N  N  A  S  K  *  L  F  R  N  T  I  H  D  P  R  *  Y  N  C  I  A  S  F  P  Q  I  H  Q  I  W  T  I  C  F  L  L  T  R  T  I  D  K  S  Q  L  I  S  T  Y  N  C  N  L  *  C  S  T  P  H  *  I  V  I  G  S  S  Q  L  N  *  T  E  Q  Y  T  R  I  V  N  G  V  Q  E  Q  R  M  I  M  A  *  F  F  R  Q  L  I  I  N  C  C  H  G  F  V  C  *   </first_frame>
            <second_frame>  S  S  E  Q  L  A  L  L  E  T  C  D  M  V  L  W  L  S  L  S  I  K  I  E  Y  V  L  F  N  E  G  R  G  V  I  I  N  I  C  P  L  A  C  S  Y  E  S  F  N  P  I  R  N  *  S  N  F  *  L  C  T  N  F  T  N  S  L  E  F  T  H  S  Q  L  G  T  G  V  R  L  S  Y  S  T  H  S  S  R  N  L  E  K  Y  V  E  I  E  L  V  P  *  L  T  V  A  I  S  L  C  S  W  K  I  R  D  P  S  T  L  S  Y  L  S  A  R  S  F  H  T  D  A  T  F  V  E  *  T  M  P  P  S  N  S  S  E  T  Q  F  M  I  Q  D  N  T  I  A  L  H  L  S  H  R  F  T  R  F  G  P  Y  A  S  F  *  H  E  P  S  I  N  P  N  L  F  R  P  I  I  A  I  F  N  A  R  L  H  T  E  *  L  S  A  P  V  N  *  I  E  L  S  N  T  P  E  L  S  M  V  F  K  N  R  G  *  L  W  L  S  F  S  G  S  S  L  S  T  V  A  M  D  S  S  V  D  </second_frame>
            <third_frame>   V  Q  N  N  *  H  Y  *  R  L  V  T  W  F  F  G  F  L  F  Q  L  R  L  N  M  F  C  S  M  K  V  E  V  S  S  S  I  Y  V  L  *  L  V  H  M  S  H  S  T  P  *  E  T  E  V  T  S  D  C  V  Q  I  S  Q  I  L  L  N  L  H  T  H  N  L  E  Q  E  L  D  Y  H  I  L  P  I  V  H  V  I  *  R  N  M  L  K  L  N  *  Y  L  D  S  Q  W  Q  F  L  C  V  V  G  R  Y  E  I  H  Q  L  Y  H  I  S  Q  P  D  L  S  I  Q  M  Q  H  L  *  S  K  Q  C  L  Q  V  T  L  P  K  H  N  S  *  S  K  I  I  Q  L  H  C  I  F  P  T  D  S  P  D  L  D  H  M  L  P  F  D  T  N  H  R  *  I  P  T  Y  F  D  L  *  L  Q  S  L  M  L  D  S  T  L  N  S  Y  R  L  Q  S  I  E  L  N  *  A  I  H  Q  N  C  Q  W  C  S  R  T  E  D  D  Y  G  L  V  F  P  A  A  H  Y  Q  L  L  P  W  I  R  L  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLe0123G17.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="60449" PGL_stop="61040"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60449" e_stop="61040"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60449" e_stop="61040" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60449" stop="61040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212161" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTGGAAGAAGAGACTAAGCAGAATATACCAGAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAAGCAGAAGTCACCACAAAATATTCCTTTAACAGCCATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTAGGCAGAAGTCACCACAAAATATTCCTTTAACAACCATGAAACCTGATGACTTGCTTGTTGAAGAAGAGACAAAGCAGAATCCACCACAAAATATTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGCGGAAGAAGAGACTCAGCAGAATCCACCACAAAATTTTCCTTTAACAGACATGAAGCCTGATAACTTGCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTTCTTCAACAGACATGAAGCCTGATAACTTCCTTGTGGAAGAAGAGACTCAGCAGAATCCACCACAAAATATTCCTTTAGATACTTTATCTTCTGATAATAAATTAGTAACCCAACAGAAAACCAATAATGCACAACAAGCTGATCCACCTAAAGATGCAAATCGAGATACGCCGGATAAGCCCATGATGAA</gDNA_template>
            <first_frame> L  W  K  K  R  L  S  R  I  Y  Q  K  I  F  L  *  Q  P  *  S  L  I  T  C  L  W  K  K  R  L  S  R  S  H  H  K  I  F  L  *  Q  P  *  S  L  I  T  C  L  W  K  K  R  L  G  R  S  H  H  K  I  F  L  *  Q  P  *  N  L  M  T  C  L  L  K  K  R  Q  S  R  I  H  H  K  I  F  L  *  Q  T  *  S  L  I  T  C  L  R  K  K  R  L  S  R  I  H  H  K  I  F  L  *  Q  T  *  S  L  I  T  C  L  W  K  K  R  L  S  R  I  H  H  K  I  F  L  Q  Q  T  *  S  L  I  T  S  L  W  K  K  R  L  S  R  I  H  H  K  I  F  L  *  I  L  Y  L  L  I  I  N  *  *  P  N  R  K  P  I  M  H  N  K  L  I  H  L  K  M  Q  I  E  I  R  R  I  S  P  *  *  </first_frame>
            <second_frame>  C  G  R  R  D  *  A  E  Y  T  R  K  Y  S  F  N  S  H  E  A  *  *  L  A  C  G  R  R  D  *  A  E  V  T  T  K  Y  S  F  N  S  H  E  A  *  *  L  A  C  G  R  R  D  *  A  E  V  T  T  K  Y  S  F  N  N  H  E  T  *  *  L  A  C  *  R  R  D  K  A  E  S  T  T  K  Y  S  F  N  R  H  E  A  *  *  L  A  C  G  R  R  D  S  A  E  S  T  T  K  F  S  F  N  R  H  E  A  *  *  L  A  C  G  R  R  D  S  A  E  S  T  T  K  Y  F  F  N  R  H  E  A  *  *  L  P  C  G  R  R  D  S  A  E  S  T  T  K  Y  S  F  R  Y  F  I  F  *  *  *  I  S  N  P  T  E  N  Q  *  C  T  T  S  *  S  T  *  R  C  K  S  R  Y  A  G  *  A  H  D  E </second_frame>
            <third_frame>   V  E  E  E  T  K  Q  N  I  P  E  N  I  P  L  T  A  M  K  P  D  N  L  L  V  E  E  E  T  K  Q  K  S  P  Q  N  I  P  L  T  A  M  K  P  D  N  L  L  V  E  E  E  T  R  Q  K  S  P  Q  N  I  P  L  T  T  M  K  P  D  D  L  L  V  E  E  E  T  K  Q  N  P  P  Q  N  I  P  L  T  D  M  K  P  D  N  L  L  A  E  E  E  T  Q  Q  N  P  P  Q  N  F  P  L  T  D  M  K  P  D  N  L  L  V  E  E  E  T  Q  Q  N  P  P  Q  N  I  S  S  T  D  M  K  P  D  N  F  L  V  E  E  E  T  Q  Q  N  P  P  Q  N  I  P  L  D  T  L  S  S  D  N  K  L  V  T  Q  Q  K  T  N  N  A  Q  Q  A  D  P  P  K  D  A  N  R  D  T  P  D  K  P  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60451" stop="61038"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>588</number_coding_nucleotides>
                  <number_encoded_amino_acids>196</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEEETKQNIPENIPLTAMKPDNLLVEEETKQKSPQNIPLTAMKPDNLLVEEETRQKSPQNIPLTTMKPDDLLVEEETKQNPPQNIPLTDMKPDNLLAEEETQQNPPQNFPLTDMKPDNLLVEEETQQNPPQNISSTDMKPDNFLVEEETQQNPPQNIPLDTLSSDNKLVTQQKTNNAQQADPPKDANRDTPDKPMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="70494" PGL_stop="73309"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70494" e_stop="70585"/>
            <exon e_start="70789" e_stop="70837"/>
            <exon e_start="70940" e_stop="71231"/>
            <exon e_start="73008" e_stop="73309"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.505" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.902" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70494" e_stop="70585" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.505">
            <gDNA_intron_boundary i_start="70586" i_stop="70788" i_length="203"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70789" e_stop="70837" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.902">
            <gDNA_intron_boundary i_start="70838" i_stop="70939" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70940" e_stop="71231" e_length="292"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71232" i_stop="73007" i_length="1776"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="73008" e_stop="73309" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70494" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70495" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="70988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70496" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70496" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70497" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344741" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70499" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278536" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70502" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709314" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70502" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70505" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70509" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70509" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70510" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70514" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70533" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70551" stop="70585"/>
              <exon start="70789" stop="70837"/>
              <exon start="70940" stop="71231"/>
              <exon start="73008" stop="73115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251080" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70995" stop="71231"/>
              <exon start="73008" stop="73255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGATTAGGTTTTGGCAATAGAGGAGACGCGGAGCTTAGAGGCATCCATGGCTACGGACCACTCTGATGATTTAGACCAACTTCTTGACA : GTGCTTTGGATGATTTTCAGAGCCTCAATCTCACTACTGCTTCTCAAAG : AAATGGGGATGGAGAGGGCAAGAAAGAGAGTTCTTGTATGCCTAGTGAGGTTCAAGGGCTTGGGATGTCGTTACCCAATTTGAAAGCTAAGAATAAAGGGAAGCAAAAGGCTGCCAAGGAGGTGAAGGACTCGCATGTCTCGGAAGCTCTTGATAAGCTTAGAGAGCAGACAAGAGAGGCTGTTAAAGGATTGGAATCAGTGGCAGGGCCAAGACCCAGTGTGGAGAACTTTGGAAGTGATCCAATGATGGAGGATTGGGTCAAACAGTTTGAGGAGCTGGCTGGTTCTCAG : GACATGGAGTCTATTGTAGAGACCATGATGCAGCAGCTTCTTTCAAAGGAAATTCTTCATGAACCTATGAGAGAAATTGGAGAAAGATATCCAAAATGGTTGGAAGACAATAAAGCCAAGTTAAGCGGTGAAGAATATGATCGTTACAGGCAGCAGTATGAACTTATCAGAGATCTAAACAAAGTTTATGAAACTGAGCCAAGCAACTTCAACAAAATTGTTGAGCTTATGCAGAAAATGCAAGAATGTGGCCAACCACCAAACGATATAGTGCAGGAACTTGCTCCAGACTTTGATATATC</gDNA_template>
            <first_frame> K  R  L  G  F  G  N  R  G  D  A  E  L  R  G  I  H  G  Y  G  P  L  *  *  F  R  P  T  S  *  Q :   C  F  G  *  F  S  E  P  Q  S  H  Y  C  F  S  K  :  K  W  G  W  R  G  Q  E  R  E  F  L  Y  A  *  *  G  S  R  A  W  D  V  V  T  Q  F  E  S  *  E  *  R  E  A  K  G  C  Q  G  G  E  G  L  A  C  L  G  S  S  *  *  A  *  R  A  D  K  R  G  C  *  R  I  G  I  S  G  R  A  K  T  Q  C  G  E  L  W  K  *  S  N  D  G  G  L  G  Q  T  V  *  G  A  G  W  F  S   : G  H  G  V  Y  C  R  D  H  D  A  A  A  S  F  K  G  N  S  S  *  T  Y  E  R  N  W  R  K  I  S  K  M  V  G  R  Q  *  S  Q  V  K  R  *  R  I  *  S  L  Q  A  A  V  *  T  Y  Q  R  S  K  Q  S  L  *  N  *  A  K  Q  L  Q  Q  N  C  *  A  Y  A  E  N  A  R  M  W  P  T  T  K  R  Y  S  A  G  T  C  S  R  L  *  Y  I </first_frame>
            <second_frame>  K  D  *  V  L  A  I  E  E  T  R  S  L  E  A  S  M  A  T  D  H  S  D  D  L  D  Q  L  L  D   : S  A  L  D  D  F  Q  S  L  N  L  T  T  A  S  Q  R :   N  G  D  G  E  G  K  K  E  S  S  C  M  P  S  E  V  Q  G  L  G  M  S  L  P  N  L  K  A  K  N  K  G  K  Q  K  A  A  K  E  V  K  D  S  H  V  S  E  A  L  D  K  L  R  E  Q  T  R  E  A  V  K  G  L  E  S  V  A  G  P  R  P  S  V  E  N  F  G  S  D  P  M  M  E  D  W  V  K  Q  F  E  E  L  A  G  S  Q  :  D  M  E  S  I  V  E  T  M  M  Q  Q  L  L  S  K  E  I  L  H  E  P  M  R  E  I  G  E  R  Y  P  K  W  L  E  D  N  K  A  K  L  S  G  E  E  Y  D  R  Y  R  Q  Q  Y  E  L  I  R  D  L  N  K  V  Y  E  T  E  P  S  N  F  N  K  I  V  E  L  M  Q  K  M  Q  E  C  G  Q  P  P  N  D  I  V  Q  E  L  A  P  D  F  D  I   </second_frame>
            <third_frame>   K  I  R  F  W  Q  *  R  R  R  G  A  *  R  H  P  W  L  R  T  T  L  M  I  *  T  N  F  L  T  :  V  L  W  M  I  F  R  A  S  I  S  L  L  L  L  K   : E  M  G  M  E  R  A  R  K  R  V  L  V  C  L  V  R  F  K  G  L  G  C  R  Y  P  I  *  K  L  R  I  K  G  S  K  R  L  P  R  R  *  R  T  R  M  S  R  K  L  L  I  S  L  E  S  R  Q  E  R  L  L  K  D  W  N  Q  W  Q  G  Q  D  P  V  W  R  T  L  E  V  I  Q  *  W  R  I  G  S  N  S  L  R  S  W  L  V  L  R :   T  W  S  L  L  *  R  P  *  C  S  S  F  F  Q  R  K  F  F  M  N  L  *  E  K  L  E  K  D  I  Q  N  G  W  K  T  I  K  P  S  *  A  V  K  N  M  I  V  T  G  S  S  M  N  L  S  E  I  *  T  K  F  M  K  L  S  Q  A  T  S  T  K  L  L  S  L  C  R  K  C  K  N  V  A  N  H  Q  T  I  *  C  R  N  L  L  Q  T  L  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLe0123G17.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70504" stop="70585"/>
                    <exon start="70789" stop="70837"/>
                    <exon start="70940" stop="71231"/>
                    <exon start="73008" stop="73307"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLAIEETRSLEASMATDHSDDLDQLLDSALDDFQSLNLTTASQRNGDGEGKKESSCMPSEVQGLGMSLPNLKAKNKGKQKAAKEVKDSHVSEALDKLREQTREAVKGLESVAGPRPSVENFGSDPMMEDWVKQFEELAGSQDMESIVETMMQQLLSKEILHEPMREIGERYPKWLEDNKAKLSGEEYDRYRQQYELIRDLNKVYETEPSNFNKIVELMQKMQECGQPPNDIVQELAPDFDI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 76 chains have been computed
$ 
$ memory statistics:
$ 92376 bytes spliced alignments in total
$ 43 spliced alignments have been stored
$ 2148 bytes was the average size of a spliced alignment
$ 12328 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2054 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 77 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:26:44
-->
