<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:38:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339269" ref_strand="+" ref_description="SGN-U339269        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: unknown(evalue: 5e-24, score=114)">
      <seq>ttgtcttccttttattaatggctctctcattagaagacttccttgttcgtgcccgagtactaaagctgtaccgacatgctctgagaatctcaaggagagcacctcctcatgctaaagctgatttgaggcagattataagacaagagatggagaataataggaattgcaatgacaagcagagaattcggttcttgattagtgatggaattgaaagagtgaaacgtttagatgagacgcttgatatgcaagggcattgatttaactggaatgggtatatgggatgccttacatcttgcaacatcaaccctggtgtgacctatccgattaatcagaaacgtgctgccaacataagggggtcatgcgctttaaccatctctgcttgggttatactggtatcgcctcagaaggtattggttttttcccacttacctcccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15347" stop="13547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15043" g_stop="14942" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="117" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14941" i_stop="14168" i_length="774">
            <donor d_prob="0.967" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14167" g_stop="13847" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="438" r_length="321" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U339269" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15043" e_stop="14942"/>
          <exon e_start="14167" e_stop="13847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGGCTCTCTCATTAGAAGACTTCCTTGTTCGTGCCCGAGTACTAAAGCTGTACCGACATGCTCTGAGAATCTCAAGGAGAGCACCTCCTCATGCTAAAGGTGAGGCATATACTTGGTTGAGTGAGTCTATTTTCTGTTGTTTAGTTCGTGGTGAATCTACTACTGTACTTTATTAAGTTAAACTAATTGAGATAACAAGGATGTTTGACACATTTTGTTATTTTGTGCTTTCTGCTCTTTGGGTTCTTCCTGTGTGTTAGTTGTTATTGCAATCATATAGTTTGATCAACTCATTTTGCCAATGTGTTAAAAGTTTACACTTTTGGTTGACTGAGCCATTGATCTTGTGTATAAAGTAGAAAAGAGGAAGCCTGCAGTGTCTGCTAAATCTAGCCACTAATAAGTTACTACGGAACTAGAGAGAATTTCATGATGAGAGTCCATCAATGAAACACTGAGATGTAACTATATGTCACTACTTGTGAAATACTACTTGGTAAATGGGCTTCCCGAGAAATTTTTCGTATCCTTTTGTCATTGCAACCCTGGCCTTTGCTGAGCTATATTAAGAACTCAACAGTCAGTTCTTAATATTTCAAAAAAAGAAATGTTAGTACATTATTGCATCTAAAATTTGTATAGGTAACACTTTTGCAGAGATGTTGAAATGAAGAGTGAATCAAAATGTTGTTTCTATCCATATCCGTCATACTTCTCTAATTATCAGCCATAAGAGTATTTTATTTTGTTCTTTATCCCATGAATTTTTTCTGATTCTACTTTCTAATGGTTCTAGGTGTAAGGCTTTTTCTCTTTTCAAATATGTTGTTTATTTAGTGTTCAATGACTTCAATTGGACCTTTCCGTTTGCAGCTGATTTGAGGCAGATTATAAGACAAGAGATGGAGAATAATAGGAATTGCAATGACAAGCAGAGAATTCGGTTCTTGATTAGTGATGGAATTGAAAGAGTGAAACGTTTAGATGAGACGCTTGATATGCAAGGCCATTGATTTAACTGTAATGTGTATATGGTATGCCTTACATCTTGCAACATCAACCCTGTTGTGACCTATCGGATTAATCAGAGACGTGCTGCAAACATAGGTGGTTCATGCGCTTTAGCCATCTCTGCTTGGTTTATACTGTTATCGCCTCAGAAGTTATTGTTTTTTTCCAACTTACCTCCAATTA</genome_strand>
        <mrna_strand>TAATGGCTCTCTCATTAGAAGACTTCCTTGTTCGTGCCCGAGTACTAAAGCTGTACCGACATGCTCTGAGAATCTCAAGGAGAGCACCTCCTCATGCTAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATTTGAGGCAGATTATAAGACAAGAGATGGAGAATAATAGGAATTGCAATGACAAGCAGAGAATTCGGTTCTTGATTAGTGATGGAATTGAAAGAGTGAAACGTTTAGATGAGACGCTTGATATGCAAGGGCATTGATTTAACTGGAATGGGTATATGGGATGCCTTACATCTTGCAACATCAACCCTGGTGTGACCTATCCGATTAATCAGAAACGTGCTGCCAACATAAGGGGGTCATGCGCTTTAACCATCTCTGCTTGGGTTATACTGGTATCGCCTCAGAAGGTATTGGTTTTTTCCCACTTACCTCCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318789" ref_strand="+" ref_description="SGN-U318789        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: AT5G05690.1 | Symbol: None | cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD), identical to Cytochrome P450 90A1 (SP:Q42569) (Arabidopsis thaliana) | chr5:1702689-1706781 REVERSE | Aliases: MJJ3.9, MJJ3_9 (evalue: 0, score=676) genbank/nr: gi|45260636|emb|CAD27417.1| cytochrome P450 [Nicotiana tabacum] (evalue: 0, score=815)">
      <seq>gagagcgttttgcatacaaaaaaaaattaattaacatggataccatcgatctttttctctatctttttctctctgttttcaccttttatctcctccggtgtatggcggcggcccatcttcgcgggcgtaaaactcgactcccgccgggaacccttggcctcccgtttatcggagaaaccctccagttaatttctgcgtacaaaacggaaaatcctgaaccgttcatcgatgaccgtgtttcaaaatacggcagcattttcacgacccatgtttttggtgaaccgacggttttctctgctgacccggaaacgaaccggtttattttgcagaatgaaggtcggctttttgagtcgagttatcccggttcgatacagaatttacttgggagatactctctgttgcttatgagaggaagtctacacaaacgaatgcattcattaactatgagttttgctaattcttccattcttaaagatcatctgttgggcgatatagatcgattggttaggcttaatttggattcatggaccggcagggttttcctcatggacgaggctaagaagataacgtttaatctaacagtgaagcagttgatgagttttgatccatgtgagtggacagagaatctgatgaaagagtatatgcttgttattgaaggtttcttctgcattcctttgcctattttctcatccacctatcgcaaggccattcaagcgagaacgaaagtagcggaggcgttgggattggtagtgagagatcggagaaaagaacgagacggaggagaacgaaagaatgatatgttggaggcattgttcgaaggagacggagttgaaggagtaggattttccgatgaggaaattgttgattttatactggcgttgcttgttgctggctatgaaactacctccaccatcatgacccttgctgtaaaattcctcacggagacaccccgtgctctatcactacttaaggaagagcacgaggagatcaggttaagaaaaggtgaagttaagtctttacaatgggaagattacaagtcaatgcccttcactcaatgcgttgttaatgaaactctgcgaatcgctaacataattagtggagtgttcaggagagccatgactgacataaatatcaaaggttataccattccaaaaggttggaaggtttttgcttctctccgagctgttcatctagaccatgaacatttcaaagatgcgcgtacatttgatccatggaggtggcagagtagtgcaggaccgacaagctcacctaacgtattcacaccatttggtggtggacctcgtcgatgtcctggttacgagcttgctagagtggaactctctgttttccttcaccacttggtgactcgttttagttgggttccggctgaggcagataagttagttttcttcccaacgacaaggatgctgaagcgatatccaattaacgtccaacatcgaagcttgtttgagcagaaagaagaagagaagggttcgtgagattgtagaatgcagagtggagggaggtgtatgaaaggtgttaaataagacaatagtatataggtgttagcatatacttagaaaattaaattatttgtagtgaattgagcagagattaacattcctctgatctgcaaggggaatcaggaagattttattctgagcaattggttattatataatagtaatgcacagtttttaatgtatgttaattagcatgattaaagatttaattgccctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33619" stop="25984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33320" g_stop="32758" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32757" i_stop="32522" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32521" g_stop="32372" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="713" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32371" i_stop="32294" i_length="78">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32293" g_stop="32036" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="971" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32035" i_stop="27689" i_length="4347">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27688" g_stop="27602" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="972" r_stop="1058" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27601" i_stop="27508" i_length="94">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27507" g_stop="27429" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1059" r_stop="1137" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="27428" i_stop="27062" i_length="367">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27061" g_stop="26955" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1244" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="26954" i_stop="26864" i_length="91">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="26863" g_stop="26733" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1245" r_stop="1375" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="26732" i_stop="26655" i_length="78">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="26654" g_stop="26280" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1750" r_length="375" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U318789" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1750</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33320" e_stop="32758"/>
          <exon e_start="32521" e_stop="32372"/>
          <exon e_start="32293" e_stop="32036"/>
          <exon e_start="27688" e_stop="27602"/>
          <exon e_start="27507" e_stop="27429"/>
          <exon e_start="27061" e_stop="26955"/>
          <exon e_start="26863" e_stop="26733"/>
          <exon e_start="26654" e_stop="26280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGCGTTTTGCATACAAAAAAAAATTAATTAACATGGATACCATCGATCTTTTTCTCTATCTTTTTCTCTCTGTTTTCACCTTTTATCTCCTCCGGTGTATGGCGGCGGCCCATCTTCGCGGGCGTAAAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTCATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTTTATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAAGTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAGATCGATTGGTTAGGCTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACGAGGCTAAGAAGGTAATCATTTTATTTAATTATTTTTCAATTCGGATTGTTGAGTTTTGATGGATTAGAGAATAACAACTTTAGTGTAGTTGTGGTGGGGTATGATTACTTTTCCAAAATTAATTAATTAATGGAGACATAGTAGTATTATTATGTACGAGTAATTATTATGATGATAACACATGTGAATGTGGTGTTATCATGACTTTTTTTTTATTTTTAAATTTTTGGTTGTGATGTATGTGCAGATAACGTTTAATCTAACAGTGAAGCAGTTGATGAGTTTTGATCCATGTGAGTGGACAGAGAATCTGATGAAAGAGTATATGCTTGTTATTGAAGGTTTCTTCTGCATTCCTTTGCCTATTTTCTCATCCACCTATCGCAAGGCCATTCAAGTATGTATTATAAATCTAATTCAATTAATTAGCTTTTACTTGTTGGTGGTGAATAATCATTTTGTATGTATTTTTCAGGCGAGAACGAAAGTAGCGGAGGCGTTGGGATTGGTAGTGAGAGATCGGAGAAAAGAACGAGACGGAGGAGAACGAAAGAATGATATGTTGGAGGCATTGTTCGAAGGAGACGGAGTTGAAGGAGTAGGATTTTCCGATGAGGAAATTGTTGATTTTATACTGGCGTTGCTTGTTGCTGGCTATGAAACTACCTCCACCATCATGACCCTTGCTGTAAAATTCCTCACGGAGACACCCCGTGCTCTATCACTACTTAAGGTTCGTTCCATTCTAATTAATTATTTCTACTCTTAAGTTTGCCATTTAATCCTCTTTTTAAATCAAATCACACTACTTATGTACTTTATACGTTGCATCTTTAATTTAAGGGGAGAAAAATAATCACTTTATTAGAATTTAATGATTTTAATTAACTATATGATTGTGATATATATATATATATATTTTTTAAAAAGTATATAAGAGAATGTTACGTAGAGAATATTATTATTAATTAAATGGATGATAGAATTTATGTAGTGGACCCTAAAGTTGGTACCCACATGTTTGACCTGTTAGATGAATTATCTACTTATCTAAATTCTCATCCAAGCAAATAATCGAGTATCTCTACTCATTCCTTCCTTGAGCTTAAAAAATTTCCACAAACTCTAATAGAGAATTACTAGTGTCATTACTATTGACAATTTTGATTAATAGAGTCTTTTAAGTCATCGATACAAATACAAATCAAGTTGTATACTCTTTCGGCTCTTGTCCATTTCTCATTGTCTTCATCTCCATTTTGTTAACTCCTTACTTGGATGGATGGATGGATGGCATATGTCCAATTTTTAATGTTAATGATGTAGATTTGATTAACTAAAGTTAGATCTAAACTATGGGTTAGATATTATAAATATTCCCATGATTGATTTGTTCTCAAAAAAATTCATCTTTAAAGTCCTCTACTCCTCCTCATTGATTTACGTACCACAATACTTTATTTTGCTACACTTGAGTACTCGAGGAACAACATTCTGTAACTTTTTTGTTATTTGTAAACTTACTTTTGAATTCTTTTTTCCTCCTTTTTTTCATCATTGCCCAAAAAAAAAAAAGTACCGGAAGGCTGGTGATTATATCAATTGGGCAACTTGTCGCCGCTGACGGATTCATAAAAAAAAAGGAAAATCTTGTGTGTTAATTTTTTTTTTGGATTATGCTAAATAATAAAAAAAAAGGGTAAAAAATTTAAAATGTTCATTATATTTTTTTAATTTTAAAATAAAATTATTTTTATTTAATTAGGAAGTACTCCATTTGTCGGTATTTATTTGTTGACTTTTCCTTTTATAGTTGTCCGTAATAACGTGTTCATTTTGACAGAGAGACCATTTTTTCATATTATATTCTTAATTAATTAATTTAAAAAAGGTAGAAATTTTTGAAAATATTAAATTTTCAATTCGTAAAATAATAAATCAACTATGTTATTAATTATAAATCTTTTTTAATAAATATATTTATTTAAAAATGAATGAGTAATTAGGGATGGAGAATATTAAAGTTAAAAAAATAAAATAAAAATTTAAAAATAAATTTTTTCTGGTGAAAAGAAGTTCTCCATTTTATTTGGGTTTAGTACGTATGTAATTTGGAAAAAAGAAAAATGTATAGGATTCATAAGATGGGGTTTGTGGCCGACAAAGAAGAGAAATTGGCAATTGGTACTGACGAAAAGGGGTGTTGGGTAGCCCCATGTGTCCTCACTCTTTCTTGTATCAACATCACACGTGCATCCAACTTCACATTCAATCCCAATACCCACTCTACCATTATTTTTAGTTATATACTTTCTCATTTCTAATTCTTATTATTTATTATAAAATATACATCTTTTTCTCAAGTAATCTTCTTTCCTGGTTTGGTAGACTCACGTCAACATGCTCAACTATTAAAAATAAATTATCTCATTAAGTCCTATGAAAAGTGTCTTTTTTTTAAAAAAAAATAATAATAAATAATAGTCACAAATATAAGGTTTGTTTAGTGTGTGATATTTTTTCTAAGTGCTTTTGCGAGCTATCATATATGAGTGAAATTTTATACTTTTTGAGAAATGCTCCCAAAACGGAAAGATTCCACAACATGTATGTATAGAGTGTTTTCCACTATTTTATGTTGAATTAGTTTGAAATACTATTTAGACATTTAGATTACTAAATATAGTAGTAGAAAAATTGTTTGACTGTTGAATGTTCATTTTTCTTTGGAGTATCTTGGGGTACTAAGACTTATTTTTAGTGGTTTTTGACTTTTAACCATTTTTTCAAGTTTTGAAAGGATTTTGAGTTTGCAAAAAGTGCTTAAAAACACTTTTTAATGTTTACAAAGTATAAAAAAAAAACAAAAGTTGAGGATTCCTAATATATAACTATTGGCTTTTGATTGTTAACTTTTTAGGGCACTTAGAAAATGTTAAATCCAAATACCCCTAAAATTAAGATAGATGTTTGAATTGACTTTTTAGAAATAGTATATTTTAACTTAAAATTTAAGAGGGTGTTTGATCTGACTTATTTTTAGTTCTTTTTGGGTTTTTACTTCTGGAAGTGTTTTGGGAATAAAAATAAGTTCAAAATTATAAAGTTGGGAATTGCTTAAAAATATCAAAACAATTAGAAAGATGCTCCCTTCATTAATTACTTGTGGATTTTTTCTTTTTTACTTTATCAATTTTGACAAATAAAAGAATGACAATTTTTTTATCTAGAATTTCTTGAAAATATTAATTTTTTAATTTATTCATTTCATAGATAAAATGACAAATTTACTTATCAATAATGATGTTTTTAATAGTCGTCTGAACTCAAAAATAAAATAAATAAGTAATATTAGGGATAGAAGGTGTACCTGTTTTTCTTTTTCTAAACACCATAAAAATCTTTTTTTTTAAAAAAGAACTATTAATTCAAGAACATTTAAACTAAGCCAAATCCAAACATACTACAAGACATGTGACATTTAGTCAAAAATTAGGCAGTGAAAGTAAAGGGTCTACAATATAGTCAAAGAAGAGCAGAAGCATAGGGTCTATGTTTCTGTCGACTAAAAGGAAAAAAATGAACAAACTCCTGCACGCCTATGTTTGTCTTTTTAAAAAAATTGAGCTAAATTTATTTTTTAGTTTTTTATTTTAAATAATATCTTTCTCTATCAAAATAACTACTAATTCAAACTTTTTATTTTATCTTTCATGAGAATTTCTTATTACCAAACTGATATTGTGATATGTTTTAAATTATAAGCTTCAAAACTCTAATATAATTTGGCATATTCTGAAGTTTGTTTTCTTCTTAATTAGGTTTTGTTTGGTAAAATATGTATGTATGAATTGGCATAGAGTAACTCTCCCATTTATTTTTACTTGTCCCATATACGGAAAATAATTTTTTAAATTTGTCGTTCATATTAGTAAATCATGAGAGATTTATTATTTTTTTTCAATATTACTCTTATCATTGAGTTAACGTCCCCTTTGTTTCAATTTGTTTGTTTTAGCTCATTTTAAAATGAATTTTTTTTTGACGACTCGTTAATTTCAACTTTTCATATGATATGTTTTAGAATTAAACGACATTTTTAGTATATTCTATACATTTTTTTGGTTTAAGAGCTCGATATTTAGATATTTTAATTTGTTTAATTTCATGTCAAGTCAAAACAGAAAACAAACTAAAACAAAAGAGTAAATGAACTACACTATTTGTCAAATATAGATTTTCAAAGAAAAAATTTCTTAAAGAAATGAGGAGTAATAAATAAATGGTTGAAAAAGGGGAAGACTTTAGGAAAATGGTGTGGCTGATCTGTGGATTAGAAGTCAGAAAAAAGTAAAAGGGCTAAATTTCTTAGGAGTGTTGAGAGTTGAGACTATGTCTGCTCTGATTTAATGACATTTATAACTTTTCTTTTCCTACTCCTTCATTCCAATGACTTTGCTTTTTCTTGTTCTATACTATACACATACACCCAACTTCATTTTTTTTAATACGTATTTGTGTAATCCATTGACTGGATGAGGAAAGGGCTTTAATAGTGTTCTAATGAGTTTAAGGATTTAGTTGGCAAAGTGATAAGTATGTGGGTTTAATTGACAAACGGAACCAAGTACAGGGATCTCCCAAGTCATTCCAGTAAAGAGTGTGATTGTTTCTTTGTTGCTTTATGTGATTCTAATTTGGTTTGGTAATTTAGCATTCATTAGCTTACTTGTTTGCATTATCCCCTTTTAACAAATGAAGTGCATGTTTTTATCATAATACCTATATTAGTTGGTGTATAGTCTCAAAAATTGATTTGGGAATGAATAATGGTGATTGTCATCTTTTATATGTTAAACAGGGACACAGAGTGAACGAATGGAAGAGTATAATTTATTCAAACAATCTGGTCTTAGTAAATTTGAGTTGACACAGGATCGATCATGAGATTGGATCATATTGTGTTTATACCGGGAAAAAAATCATTTTAATAGAATCATTAGCCAAGATTTATACATATTAAAGAATCATTAGCCAGGAAGTTAAGCAATTATAATTATAACTCAACGTGTTTTGGCAGGAAGAGCACGAGGAGATCAGGTTAAGAAAAGGTGAAGTTAAGTCTTTACAATGGGAAGATTACAAGTCAATGCCCTTCACTCAATGCGTAAGTGCATTACTTCAACAAACTCAAGCTCAGCTTAAACATTATAATCTATTATGCTCTCATGTCATCAGTTTGTCTATGATTTCACCTTCAGGTTGTTAATGAAACTCTGCGAATCGCTAACATAATTAGTGGAGTGTTCAGGAGAGCCATGACTGACATAAATATCAAAGGTAAGTTGTCATTACCTTAATTGTGGTTTAAGGGAAGATTTCTCTACAAATAAAGAATTTTGCCAAAACTCCTTATAAATGTTGCTAAAGGCTTTTGTGATATGAACTCAATTGTTGCTAAAAGGAAAATGTATTGCCACTAAATGTTGTATTCTTCCTCTCTCGATATGTTTATAACATTGACACTTCCAATATTGAATGCAATACTTCGAACTTACATGTGTGAAGTAAAATCCGTATCAGTTAATAGCATGTTCTAATGTCATTAGTTTGGGGTCATCCAGGCATTTGATTAGTTCTATTACTGTCAACAAGATATGATCGATATTTGTCACTAAAAGAGTTTAAATATATGATTTTTTTTCAGGTTATACCATTCCAAAAGGTTGGAAGGTTTTTGCTTCTCTCCGAGCTGTTCATCTAGACCATGAACATTTCAAAGATGCGCGTACATTTGATCCATGGAGGTGGCAGGTGTTTTAATATTTCCATCTCACTCTATTCCATATAAAATCTGAATACAAGTGTTAACTCGCCATTTATCAAAATGTGTGAAAACATACAGAGTAGTGCAGGACCGACAAGCTCACCTAACGTATTCACACCATTTGGTGGTGGACCTCGTCGATGTCCTGGTTACGAGCTTGCTAGAGTGGAACTCTCTGTTTTCCTTCACCACTTGGTGACTCGTTTTAGGTACGCTATGTAGATTTCATTTTCCACATATGCAATACTATGATTAGTGTAGCACACTTATATTGGTGGTGATTGCAGTTGGGTTCCGGCTGAGGCAGATAAGTTAGTTTTCTTCCCAACGACAAGGATGCTGAAGCGATATCCAATTAACGTCCAACATCGAAGCTTGTTTGAGCAGAAAGAAGAAGAGAAGGGTTCGTGAGATTGTAGAATGCAGAGTGGAGGGAGGTGTATGAAAGGTGTTAAATAAGACAATAGTATATAGGTGTTAGCATATACTTAGAAAATTAAATTATTTGTAGTGAATTGAGCAGAGATTAACATTCCTCTGATCTGCAAGGGGAATCAGGAAGATTTTATTCTGAGCAATTGGTTATTATATAATAGTAATGCACAGTTTTTAATGTATGTTAATTAGCATGATTAAAGATTTAATTGCCCTCAAAATATTTA</genome_strand>
        <mrna_strand>GAGAGCGTTTTGCATACAAAAAAAAATTAATTAACATGGATACCATCGATCTTTTTCTCTATCTTTTTCTCTCTGTTTTCACCTTTTATCTCCTCCGGTGTATGGCGGCGGCCCATCTTCGCGGGCGTAAAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTCATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTTTATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAAGTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAGATCGATTGGTTAGGCTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACGAGGCTAAGAAG............................................................................................................................................................................................................................................ATAACGTTTAATCTAACAGTGAAGCAGTTGATGAGTTTTGATCCATGTGAGTGGACAGAGAATCTGATGAAAGAGTATATGCTTGTTATTGAAGGTTTCTTCTGCATTCCTTTGCCTATTTTCTCATCCACCTATCGCAAGGCCATTCAA..............................................................................GCGAGAACGAAAGTAGCGGAGGCGTTGGGATTGGTAGTGAGAGATCGGAGAAAAGAACGAGACGGAGGAGAACGAAAGAATGATATGTTGGAGGCATTGTTCGAAGGAGACGGAGTTGAAGGAGTAGGATTTTCCGATGAGGAAATTGTTGATTTTATACTGGCGTTGCTTGTTGCTGGCTATGAAACTACCTCCACCATCATGACCCTTGCTGTAAAATTCCTCACGGAGACACCCCGTGCTCTATCACTACTTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCACGAGGAGATCAGGTTAAGAAAAGGTGAAGTTAAGTCTTTACAATGGGAAGATTACAAGTCAATGCCCTTCACTCAATGC..............................................................................................GTTGTTAATGAAACTCTGCGAATCGCTAACATAATTAGTGGAGTGTTCAGGAGAGCCATGACTGACATAAATATCAAAG...............................................................................................................................................................................................................................................................................................................................................................................GTTATACCATTCCAAAAGGTTGGAAGGTTTTTGCTTCTCTCCGAGCTGTTCATCTAGACCATGAACATTTCAAAGATGCGCGTACATTTGATCCATGGAGGTGGCAG...........................................................................................AGTAGTGCAGGACCGACAAGCTCACCTAACGTATTCACACCATTTGGTGGTGGACCTCGTCGATGTCCTGGTTACGAGCTTGCTAGAGTGGAACTCTCTGTTTTCCTTCACCACTTGGTGACTCGTTTTAG..............................................................................TTGGGTTCCGGCTGAGGCAGATAAGTTAGTTTTCTTCCCAACGACAAGGATGCTGAAGCGATATCCAATTAACGTCCAACATCGAAGCTTGTTTGAGCAGAAAGAAGAAGAGAAGGGTTCGTGAGATTGTAGAATGCAGAGTGGAGGGAGGTGTATGAAAGGTGTTAAATAAGACAATAGTATATAGGTGTTAGCATATACTTAGAAAATTAAATTATTTGTAGTGAATTGAGCAGAGATTAACATTCCTCTGATCTGCAAGGGGAATCAGGAAGATTTTATTCTGAGCAATTGGTTATTATATAATAGTAATGCACAGTTTTTAATGTATGTTAATTAGCATGATTAAAGATTTAATTGCCCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336629" ref_strand="+" ref_description="SGN-U336629        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G05690.1 | Symbol: None | cytochrome P450 90A1 (CYP90A1) (CYP90) (CPD), identical to Cytochrome P450 90A1 (SP:Q42569) (Arabidopsis thaliana) | chr5:1702689-1706781 REVERSE | Aliases: MJJ3.9, MJJ3_9 (evalue: 8e-69, score=257) genbank/nr: gi|45260636|emb|CAD27417.1| cytochrome P450 [Nicotiana tabacum] (evalue: 2e-77, score=292)">
      <seq>aaaattaattttcatggataccatcgaactttgtctctatcggggtctatgtgggctcaccttgtatctactgcggcggatgggggcgggccatcttctcgggcgtaaaactctactcccgccgggaacccttggcctcccgtttatcggagaaaccctccagctaatttctgcgtacaaaacggaaaatcctgaaccgctcatcgataaccgggtttcaaaatacggcagcattttcacgacccatgtttttggtgaaccgacggctttctctgctgacccggaaacgaaccggtttattttgcagaatgaaggtcggctttttgagtcgagttatcccgggtcgatacacaatttacttgggagatactctctgttgcttatgagaggaagtctacacaaacgaatgcgttcattaactatgagttttgctaattcttccattcttaaagatcatctgttgggcgatatacatcgattggttaggcttaatttggattcatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33542" stop="32492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33298" g_stop="32792" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U336629" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33298" e_stop="32792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTAATTAACATGGATACCATCGATCTTTTTCTCTATCTTTTTCTCTCTGTTTTCACCTTTTATCTCCTCCGGTGTATGGCGGCGGCCCATCTTCGCGGGCGTAAAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTCATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTTTATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAAGTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAGATCGATTGGTTAGGCTTAATTTGGATTCATGGAC</genome_strand>
        <mrna_strand>AAAATTAATTTTCATGGATACCATCGAACTTTGTCTCTATCGGGGTCTATGTGGGCTCACCTTGTATCTACTGCGGCGGATGGGGGCGGGCCATCTTCTCGGGCGTAAAACTCTACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGCTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGCTCATCGATAACCGGGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGCTTTCTCTGCTGACCCGGAAACGAACCGGTTTATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGGTCGATACACAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAAGTCTACACAAACGAATGCGTTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATACATCGATTGGTTAGGCTTAATTTGGATTCATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346023" ref_strand="+" ref_description="SGN-U346023        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaacacttagaaaatctgaaattgggtactgaaaatcgactctctgaacttcgtgacggaatgacaggacggaccatcacaggcgtgacggaccgtcatagattgttcagtggaaattgactctctgacccttgcgacgacctgcaggacggaccgtcacagtcacgacggcccgtcacaggttgcgcaaatcccaggcagaatcggatttccttacacgttttaagggacgtttttggactattctttccttaattatagatttcgtgggtttatattaataactcaaattcttggggttaaaagaggtaaccctaagttaattagtggggtattattgccatcttttattcttaattatatgttaatttggggtaaaagaaagagggttttgaaacgagaccctgcgatggtccgtcgtgcccatgacggtccgtcgtggggtccgtcgcttctgccagtttttccagaaataaagtctgctgctcaaaacgactaaacgggtcgttacattatttgactctatcactttaattttctagttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46021" stop="37473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45721" g_stop="45333" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45332" i_stop="37921" i_length="7412">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37920" g_stop="37793" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="517" r_length="128" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U346023" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45721" e_stop="45333"/>
          <exon e_start="37920" e_stop="37793"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACGGGCATGACGGACCGTCACGGAGACTTCAGTGAAAATCCACTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAAATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATCGTCATCTTTTATTCTTAATTATATACTAA-TTAGGGTAAAAGAAAGAGGGTTTGAATAAGAAAAATAAGAAAGAACAAAAAGAGACAGAAAAAGAAAGAGAACGAGTAGAAAGAGAGAGAAACGAAGAGGATAGCAAGGATTCTGAGAAGATAGCTTGTTGATTTCAATTCTTTGGTGGAGGTAGGTTATGGTTATTTCATGCTATTCGTAGTAAACTCTTAAATAGTGAATGATATGTGTTAGTAGTATTGTAAACCCTTCTATATGCTTAATTGTATGCTTGCATGAATGATGTGATTATGTAATTATGAATAAATAAGCATGATGAAGCTATTGAATCCCAAATCTTGAATAGAAACCCTAATCTACTTTGATAATGATGATGCCTTGGTATGAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACTCCAGGATAGAATATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATAAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGCTGTTGTAACCAAGGGTTATAGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGATTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTTGTCACACCGGATCTTCAGGGTGAGCTAACGCGTCTAGCTTGGACTAGATCTTCTCCTTCATGTCTTGATGCCTTGAACCTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTATAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATATTGATAGTTATTGAATTGGTTTTTACTAATGAGTTTAAGTCTTCCGCATTATTTTCTGTTGATGTTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCGGCCCGGATTTGGGTCGTGACACCAGATTTTGGGGATAATGATAAGTTTTGAGTTTTAGAAGTTATTAATGAGTTTTAAGTCTTCCGCATTTTATTCTGTTTACTATGCTTGAAAATGTTGGGGTTTAGATTGGTTGGTTCGCTCACATAGTAGGATAAGTGTGGGTGCCACTCGCGACCCGTTTTGGGTCGTGACAGAAAATTAGGATAAAATGTCTAACACAAGTTAGCACCACATAGGATAATAAAAGTAGTGTCGTGATACTTATCTGTTCAAAGACAAATATGTATGGGTGTACATCGGTCGGTTTGATTCGATATTATATATTATCGATTCGATTTATCGGTTTTTGATTTTTAAATATGCTAACCAATAATAAACCAATAAGATACTTTTTATTAGTTTTCGATTTATCAATTTTTGGTTATTATCGATTCGATTTTCGATTTATCCAATAAGAAAATATCCGTAAAATATTATATGACTTCTCACTTCTCTAAATGCATTGATATAGTGAATAAGAAAGATAATAAGAAAATAAATCAATAAGAGAAAACATAGTTCAAAAGTTATAATTATATATCATGACCGCCAAAATATAAAATGAAATTTCTTATGTTAATCAAATTGCAGACCTTTAAAAACTTGCAAAAGCTACAACCTACAATAACAAACTAAAACTAAAATCAAATAGTCCAATAAGACATTTACTAAAACCAAAATAAATGTGAAGTAGATAGAGTACTAATAATTTAATGTAGTTATAATGTCTAGTTATATATTAAATTACTAATATCTATATTTAGGAAGAGTAAAGTTATAAATTATTATTGTCTTATCAGATTATCGGTTTACTTAATAACCCAATAGTAAAGATCGATATCGACCAATAATCCAATAATTTTTTCATAAACCCATTAAAATCCCAATAACTTAATAATATTTTTTCGGTTCGATTTATTGGTCGATTCAATTTTTGCATACACCTACAAATATGTGTCCAAAGTTGGATGACAAGGATAAATATATCAAAAAAATACAACTAAGGCCAGCATTTTCATTTTCTTTTATCTCCATTATTTTGAAGTTTTAAATTTATTTTCTATTTTTTATTTGTATTTAGAAAAAACTGAAAGCATTTAAATGAATTACCCAATTAATCATGTTCTTTAAAAACTTCCCTCACATTAATATATATTTAAGTAAATGAGGTTTTAACCAAACTAAACCATTATATAAAGCCATTCACCAAAATAATATATTTTTCTAAAATTTTACAAAACTAGTATAAACGTATTCCACAGTAACGTTTTAGGATATATTTTATTTTTTAAAATTGATAGCGTCAGATTGATATACGTTACTCACAATAACGTTTTACTCCTTAAACGTTACTCACAGTAACGTTTTAGGAGTAAAACATTACTGAAAATAACGTTTTAAAAGTAAAACGTTACTTATAGTAACGTATATCAACCTAATGCTGTTAGTTTTTAAAAAATAAAATATACCCTAAAACGTTACCGTGAAATACGTTTATACTAGTTTTGTAAAATTTTAGAAAAATGTATTACTTTGATAAATTGTTTTATATAGTGACTTAGTTTGGTTAAAAATAATAATGAACATTTGCTTTTTTCTTCATTTCTTTTTTTTCTTATGATAATAAAGAAGAATATACGGATACCACAAACAACAATGAACTCCTCCTCTTTTCTTTGACAAAAGAGAAGAAAAAAAGTATATCATGATGATTTCGAAGATATTGGTAGGAGAAACATTGTATTGACAAAAAAAAATTGATTTGATATATTAAATTTCTAGGCTTTCGAATTTCTTCAACAAAAGAGAAAAGAAGAAGTACATCATGATCCATTCAAACAAATTGATAGGAGAAATGTTAAAAAAAATGACTGAAAGAACGATTTCTTCATTTCTTCTTTTCTTACGATAATAAAGAAGAATATACGGATATCACAAACAACATTGAACTTCTTCTCTTTTCTTTGACAAAAGAGAAGAAAAAAAGTATATCATGATGATTCCGAAGATATTGATAGGAGAAATGTTGTATTGACGAAAAAATTTGATTTGATATATCAAATTTCTAGGCTTTCAAATTTCTTCAACAAAAGAGAAAAGAAGAAGTACATCATGATCCTTTCAAAGATATTAATAGGAGAAATGTTATATCGAGAAAAAAAATTGATTGGAAGAATGATTAGTGTAACATTGGATAAGATAATTATTTGGAGAAAGAATCCATCTATTTATGTATTTTATATCAAATTAGGAAAAGAATAAATAGATAATATGTTTTGTGATTTGAAAGGAAAGGAAATTAATGTTGATATCATCTTCTTTTTTTTTTTTTGCATTTTTAGATTCAAAAGAAAAGATGATCATATTTGAATCATTTCATCATCAATTATATTAATTTCTTCTCTTAATATCATAACTAATAATATTATTTACTATATTATTTCCTGAAATAACTTTTTAAATTATTTATTTATTTTAAAAAATAAGTTATTTATATTTAATAATAATAGCTAAATTGATACATATTATTTTTTATCAATTATTTTGACATTTGTCTTATATTTTTATTAAAATAACTATTCAAAGATGAAGGTACTCTTGAAAAAAAAGTATGCCTCAATATTTATTTTATTTAACTTTAAAAGACTATAAATTTTTATTAAAAAAATGACCATATTTAAGAACTACCATATGCTATTAGTTTCTTTTACTTAATTTCCTTAATCTCTCCATTAATATTATTTATATTTCCATAAATCACGTTTTTTCCTTTCTGTTTATTTTCTGTCAATTATTTATTCCAGGAAGTAAGTTATTATTATAGCTTAACAAGAATAGCAAAGCAAAATTTACATAATTATTTATTTATATCAATTTTTTTGAATTTTATAAATATATATATATATATATATATATATATATATATATATATATATGACATCATTTTTAGTTTAGCATTTGACATTTATTTATATCAATTATTTTGACATTTTAAATACATTTTTATTAAAATAATTGCACAAAAAAAATTTCATTATTTGTTAATGACATTTTTCCTGTTTTTAACAGATTGAATAACTAAAAACAAAGAATAATTCATATATACATAGTTTCATAGTGAAACATATATATGAGTTAATTTTTGTCTTTTCATTTCCCATCTTTTAATATATTGTTACTTTACTCTACATTAACAAAATTAATTAAGAATCATAAAAATTGAAGGGGGATGAATACATGCATATACATTAAAATCTATAATAAAGAAGACAATTATAATGGGGAGTTAAAAGTTGATTGAGTTGAAAATATTTTTTTCTATATTTTGAAAATAAAACAAGTAAATAATTTTTTCTCTCATATTTTAAGACATGCAAAATTAAATAATGATACTTATAAATATGAAAGATAAGACAATTATGAATATTTTATTAATATAATTATAAGATTGTCATATTTATAAATGTAGAGGTGTGAGTTATAAATAAATATTATAGTTACAAAATTGTTTATTCTATGTTTTTAGATCTTTTTTTTTTATGAAAATCCTAAAAGTTTATGAGATATTCGAGATATCTTTAACAAAAACAATATTGATATTGTTAAGATTTCTCGTGAGTATTCAAAAGTTATAGAATATTCGAGAATTTAATCTTTATAAATATCTAATAATTTATGAGATATTTGAGATCATTCAAAAACAATATTTAATGTTTTTATGATCTCTTCAGGAATATCTAAAAATTTATGGAACATTCAAAATAGCAGAATTACTTCAAAAATATCTTTTTGATATCCTCTGGATATGAAAAACACAAAAATTTCACATTAAAGACATAAAAAATTAATAGTTCATAAAAAAATACATTAAAGATAGAAATAATTAATATATATACAAGAGAGCTCAAATATCATTTTTATATAGAAACTGAATAAATTATGTAACTTAAACACTACATAAAGATGAAAAAGTTAAATGCGAATATTAATGATTTCATATGTCAATATATGGATGAGTTTTGATTTTCAATAAAGAATATGAAAATTTTAGATAATAAATGATTATAATTTTGGCCGTTAGTGCTATTAGCTCCTTTTACTTTCTTTTCTTTATTTCATTATTAATGTCATTTATATTATTTTCTTAATTTACTTTATTTTATTTTCTATTTTTTGTTATTAATTTATACGAATATATATGTGTGTGTGTGTGTGTGTCGCGGCCCAAATCGGGCCGCGACTGGCACCCACACTTACCCTCCTATGTGAGCGAACCAACCAATCCAAACCCCAACATTTTCAAACATAGTAACAGAATATAATGCGGAAGACTTAAACTCATTAATAAAAACCAATTCAATAACTTCTAAAAACTCAACAACTATTATTATCCCCAAAATCTGGAAGTCATCATCACAAGAACATCTACTTCAAATTACTAAAGCTAAGAGTATCTAGAAGCTAAAATACATAAAAAGCTAGTCCATGCCGGAACTTCAAGGCATCAAGACATGAAGAGGAAGATCCAGTCCAAGCTAGAAGCATTAGCTCACCCTGAAATCCGGAGTAATGAAGACTGGCTAGAGTTGCGGTTGAGTTGAAGACGATGGTATGTTTGCTGCACTCCACAAATAATTAAAAAGAAAACATACAAGTAGGGGTCAGTACAAAACACAGGTACTGAGTAGATATCATCGGCCAACTCGAAATAGAAAACAGTATATATCAGATAATATCATAAAATCAACTACAATACTCAACATGCGGCATTTACAATTACCATAACCCTTGGTCATAACACCAAGCTCATCAACGAGGACTCACGCCTCCTCATCATACTCATTTGGGAATTAGGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTCCTCTCGTGTCGGTACGTGACACTCCGCTCCTCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATACTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATTCTATCCTGGTGTTGGAACGTGACACCCGATCCATATTCTATCCTGGTACCGGAACGTGGCACCCGATCCATAATCTATCCTGGTGTCGGAACGTGACACTCTGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCATATTCTATCCTGGTGTCGGAACGTGACACTCCGATCCTCATATACTATCCTGGTACCGGAACGTGGCACCCGATCCCCTAATCTCACTACTTTCGTTCATCAAGCCTTCTTTTATACCAAGGCATCATCATTAACAAAGTAGATTAGGGTTTTTTTTTCAAGATTTAGAATTCAATAGCTTCATCATGCTTATTTTATCACCATTATATAATCACAACATGCAAACACATAATTAAGCATATAGAAGGGTTTACAACACTACCCAATACATATCATTCGCTATTAAGAGTTTACTACGAATAGCATAAAAACCATAACCTACCTCCACTAAAGAATTTTGATCAAGCAAGCAATTTCCCAAAGCTTTGTTTTCTTCTTTCTCTTGATCGTACGTTTCTCCCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAATCCTCTTTCTTTTACCTTAATTAGTATATAATTAAGTATAAAAGATGGTGAATTAACCCATTAATCAATTCAAGGTTATCTCTTTTAACCCTCAAGTAATTGAGTTATTAATATTAACCCACTAAATTTATAATTATAGAAGGAATAGTCCAAAACGTCCCTTAAAACATTTAAAGAAATCCGACCTCGCCTGGGATTACGCAGCCTGTGACGGGTCGTCGTCCCTGCGACGGTCCGTCCTGCTGCTCCGTCACAGAGTTCAGAGACTCAATTCTCTGAAGAGTTTGTGACGGTCTGTCACGCCTGTGACGGTCTGTCCTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTCAGTACCCATTTTTCAGAATTTCTAAGTGTTTTGAAACAAGACCCCTCGACGGTACGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAT</genome_strand>
        <mrna_strand>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGACAGGACGGACCATCACAGGCGTGACGGACCGTCATAGATTGTTCAGTGGAAATTGACTCTCTGACCCTTGCGACGACCTGCAGGACGGACCGTCACAGTCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAGATTTCGTGGGTTTATATTAATAACTCAAATTCTT-GGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATTGCCATCTTTTATTCTTAATTATATGTTAATTTGGGGTAAAAGAAAGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGAAACGAGACCCTGCGATGGTCCGTCGTGCCCATGACGGTCCGTCGTGGGGTCCGTCGCTTCTGCCAGTTTTTCCAGAAATAAAGTCTGCTGCTCAAAACGACTAAACGGGTCGTTACATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45321" stop="44163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45021" g_stop="44804" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44803" i_stop="44754" i_length="50">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44753" g_stop="44463" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="515" r_length="297" r_score="0.887"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45021" e_stop="44804"/>
          <exon e_start="44753" e_stop="44463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGATAATGATGATGCCTTGGTATGAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACTCCAGGATAGAATATATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATC--GGA----GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATAAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGCTGTTGTAACCAAGGGTTATAGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAAT..................................................ATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320158" ref_strand="+" ref_description="SGN-U320158        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | arginine-tRNA-protein transferase 1 / arginyltransferase 1 / arginyl-tRNA-protein transferase 1 (ATE1), identical to SP:Q9ZT48 Arginine-tRNA-protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA--protein transferase 1) {Arabidopsis thaliana} | chr5:1712671-1715700 REVERSE | Aliases: MJJ3.1, MJJ3_1(evalue: 1e-123, score=441) genbank/nr: gi|15239222|ref|NP_196189.1| arginine-tRNA-protein transferase 1 homolog [Arabidopsis thaliana] gi|13123999|sp|Q9ZT48|ATE1_ARATH Arginyl-tRNA--protein transferase 1 (R-transferase 1) (Arginyltransferase 1) (Arginine-tRNA--protein transferase 1) gi|9759095|dbj|BAB09664.1| arginine-tRNA-protein transferase 1 homolog [Arabidopsis thaliana](evalue: 8e-122, score=441)">
      <seq>aaggttgcacctgcgaaaagaaagttatccactgaagggtcagaggatctgttatttaccagcagcatctcgttccagattgcagctactttaagacgacaaagaaaaggtgttgaacatggaaaatcatcacaattgggggctggggaaagggggcaagctgctgatacccccaaagttattgctgcaacactagctacccatctaaactctctagcagaatcattgggattattagttagagcttgcaacggacatataaacttttattcttccgaaagacgagttgataaagatgccatagtcagcagccataatgagttgaagcaattctcatcaggaagctgtaataaacagagcttctcatcaacagtacatgaaaatcatgaactcaaaaagaggaagtttgaggttcgtcttaaaaggtccagttttgatcccgaagaatattccttgtataggaggtaccagattagagtgcacaatgattctcctgatgaagtcgctgagagctcatacaggagatttttggttgatacacccataatatttgttcccccatcgggggaccttactgtccccgcttgtggctttggttctttccatcagcagtatctgattgatggacggttggttgcagttggagtcatagatattctcccaaagtgtttgtcaagtaaatatttattctgggatccagatcttgccttcttatcattaggtaagtattcagcccttcaagaaataaggtgggttacacagaatcaagtacattgccctagtctccagtactattatctgggttactacatccactcctgcaacaaaatgagatacaaagcagcataccggccttctgagctactctgccctttgcgatataagtgggttccatttgatgttgccaagccactgctcgacatgaaatcgtacatggttttatctgattttgccacacaaaatgggcagcctcttcctcctagtaaccttgaaaattatgatgagcaaaatgatcaacaacactttcacggatcaaatgatatttttgtgggtgaggatgaggatgaggaaatggatgaatttaactatgaagattcagatgatgaactgattgctgagagcagtaacatccaactgcccaaagtagaagacagagatgttggtagcattttgattgggttgaaggaagttcgtctgagatacaaagatttgaggcaagcttttggttcccgtgaaaggcggtttatggagactcaactacacaaatacatgagggctgttggtgctgagctttctgaaagaatggtttattcgttgggctaactcttcaatgagtaatacaatttgtagaatttcaatgcaagagttcttgtcctcattgtgaatatcgtgtccttctcgagttgttagggcagctgccagaagttggttgttcaatcgtgtatcccttggtgtgtttgggagattcaaagtagaggaaaattagtacttttaagtgttcagttaagctgcattgtgcatttgtcataacgtagagatttgcagttggtacgtaccgctctgctagtcgacctggtcgaagaaggatcagatttgggtaaaactactcaataaggtactttattggaaatcttttaaggattatatggctgtctttacctcttttccatgcataaatggtagcagaaccgtcttcttctagcgtccttgcaatacaatactaattttattgcaatacggtgtacgtgtaggggtgggcatgattaccataaaggaagagtctttgtacttgtttttctcgagaactagttggaggcacaatgttcttgataaagataaatagtcttttagttagcacaataagtgatccatagtgagacacatcattccttaacatcttttaaatttctaagtatcttatattttaacttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0005H10-HCCXM/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0005H10.1" temp_strand="-" temp_description="C06SLm0005H10.1  AC232863.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0005H10 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95594" stop="88861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95294" g_stop="94411" g_length="884"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="884" r_length="884" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94410" i_stop="90625" i_length="3786">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90624" g_stop="90303" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="885" r_stop="1206" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90302" i_stop="89888" i_length="415">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89887" g_stop="89162" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1207" r_stop="1932" r_length="726" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0005H10.1" gen_strand="-" ref_id="SGN-U320158" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1932</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0005H10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95294" e_stop="94411"/>
          <exon e_start="90624" e_stop="90303"/>
          <exon e_start="89887" e_stop="89162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTGCACCTGCGAAAAGAAAGTTATCCACTGAAGGGTCAGAGGATCTGTTATTTACCAGCAGCATCTCGTTCCAGATTGCAGCTACTTTAAGACGACAAAGAAAAGGTGTTGAACATGGAAAATCATCACAATTGGGGGCTGGGGAAAGGGGGCAAGCTGCTGATACCCCCAAAGTTATTGCTGCAACACTAGCTACCCATCTAAACTCTCTAGCAGAATCATTGGGATTATTAGTTAGAGCTTGCAACGGACATATAAACTTTTATTCTTCCGAAAGACGAGTTGATAAAGATGCCATAGTCAGCAGCCATAATGAGTTGAAGCAATTCTCATCAGGAAGCTGTAATAAACAGAGCTTCTCATCAACAGTACATGAAAATCATGAACTCAAAAAGAGGAAGTTTGAGGTTCGTCTTAAAAGGTCCAGTTTTGATCCCGAAGAATATTCCTTGTATAGGAGGTACCAGATTAGAGTGCACAATGATTCTCCTGATGAAGTCGCTGAGAGCTCATACAGGAGATTTTTGGTTGATACACCCATAATATTTGTTCCCCCATCGGGGGACCTTACTGTCCCCGCTTGTGGCTTTGGTTCTTTCCATCAGCAGTATCTGATTGATGGACGGTTGGTTGCAGTTGGAGTCATAGATATTCTCCCAAAGTGTTTGTCAAGTAAATATTTATTCTGGGATCCAGATCTTGCCTTCTTATCATTAGGTAAGTATTCAGCCCTTCAAGAAATAAGGTGGGTTACACAGAATCAAGTACATTGCCCTAGTCTCCAGTACTATTATCTGGGTTACTACATCCACTCCTGCAACAAAATGAGATACAAAGCAGCATACCGGCCTTCTGAGCTACTCTGCCCTTTGCGATATAAGTAAGTTTCTCTTCTTTGTATAGCTTATGAACAGATACATTGTTAATTTGAGATTAAGGATAATATCCTTTTTTCTTTCAAAACTTTGCTATTCTGCTATCTATGTTTTAGGTAAATTGTGAGTGTTTTTCCTGTTCTAGATTTGTAAGTATTGTTCTTAGAGAAAGAAGGGTGCAGTGTGTTGGTTGCAGCATAAGTTAAATAATTTTTGCCTGCTTCTGTTTAAGCAGAAAATTTGTTCCATTCTTCTTGCTGCTTATGCAAAACTAGCATTTTACTGGTGCCTTGGGCAAGGACATTTTCAATTATCCTCATTTTCTTGAATCGATTTCTATTGTTTATCTCAGGTTAGAAGCAAAGTAAAGGTCTTAAGTTGCTTGAACTTCGGGTGCGGGTGTCCGATACGGGTGTGTATCTAGATGTCAGATCTTTAATGATCTAATTTTTAAGATTCGGCGATATGGATCCATGTATGGATATGGGTGTGGGGATTCACCTAAAAATAATTACAATATCTAAAAATAGAGTTCTAAACCTAAATAATGAGATATTTTGTGGAGAACTTGACGAGAATCCTGGAAGGATATTAAAGGAAAAGGAGTAACATAGAAATTTCTATATAAAAGGTATTCCATTTTCTTCAATTTCATCTTTGCTTTTGTAGCGATGGTAGAAATAATTAAAACTGTCCAGGTTTTCCCTTCAAGTTTGGTAAAAGTACCCTAATTGGTTGACCAAATCGGACAGGGATCCCACACTCACACCCCTGTCGTGTCGACACGGGTGCGACACCAAAAGTGAAGAATCCGAGCAACTTATGGAAAGTTAAAGAATTATGGTAAGGAGCAATTTAGTGAATTATAGATGATTGCTGAAGTTCATGTTAAAGAACAACTTAAGTTATCAAATCTTAAGCACTGTAAATATCTTAACTTCTAGTTCATTGCATTGAAATAGAAAAGGGATACAAAGTCATTAGTTGGATATTAAAGGGATGTGACTGGGGTCAGTAAACACAATCTATTTGGCCAAGTGATTAAAGGAGAGATTTTCCAAGTCTATTTGATGCTGCTGCAATGGATACTCTTAAATCATAATTCTAATATATAGATTATGATTTCACAGCAGAAAAAATTTCAAATTCCTTTTCGGTTTTTGAGTTCTCAACAACAAAAATCTATTTGGGCAAATGGATAAAAGAGAGTTTTTTCAAGTATATTGTGATTTTGAAGTATGCCCTCAGGCTACTATTGGTGTTGCGTAACATAGGTGCGTCTGTTGATGGGACATGTTTATGTACAAATTGCACACATTCACACGCACACAGATTCCCTTGTATAATACCATTTTAATAGGAACATTATTGTCATTAATCAAAAGCGGAGCTATTCACTACTTGTTCAATCAGACCTGTCATTCCCTCTCTCTCTCTCTCTCTCTTATTTCCTTTTCAAGCTGTCATTTCCCCTGCTTTTCCAATGACCGGTATAACCATGAAATTTCAAGCATACAAGCTCTGATATACCTTACCAATCCTATTGAGGCACCAAAAGCCCTTACTAACAAGCATGTAGAAAATAAAAGCTAGAAAGAACTAAATATCCACCACTTGACTATGTTGCTCGGACTCTTCAAAAATACCAACGGGTGCATGTCAGATTCGCCAAAAGTAGTCTATTTTTGAAGAATCCGAGACGGGTCGGCATCAAAAGTGGAGAGTCCGTGCAACTAAGCCATTTGAAGTCATATACACCACTTTTCCACTGTTCTGTGGAATTAAAATAGGAATTTGCAGCTTGCCCTTCTGAAGGCTCGAAGGCAGGGGCATGATAATTTATTCGACCAGAAGGCATAAACTGAGCTCTTGAAAGCCATGAATGCAGAAAATTTTATGAGTTTGGAGTGGTTCGCTAGGGAGGGGGAATTGGAGAATCAGAGTAGCAGTTGAAGCTCAGAAGGGTAAGCTAGGCTGAGTATGTGTAGCTTTGGGTGCTAGTTTTTAAGCTATATCTCTGTTCCTGATGCATAGGTACAATTTGAAAGACAATTTGTTGGAGTTGCCCTGAATATGGTTTTAGAGAAAAAGGGAAGAACATATTGCACAAGATGAAGAGATGCTGAGGTTCTCGAGTTATGGCCAAGTATTTAATTGGTCAAAAATTAGCAGCCACAAAGAAAATTCTAATTAACTTGCCTTGGATATATAAACTCAATTTTATATTATTTTTAATTTGTTGCATCCAACAATGAACCAATCTTGTCGGTGTCAGCTCAGTTGCTTACGAAGTGGGGGAAAAGGAGCATCCTGAAAGGGCTCTGTATAATGATGAAGTGAGCTTCTGGATTATGATAGATGAGCTGTACTGCAACTTGTTTTCTTCTTAAAAGTAAAATGACAGTTTTGTCGGTAATGTAATTAGGGATAGGGAATTAAGTCAATTAACAGGGGTATTTTGGGTAAAGATAAAATGGGCAAGGTTAGGTATAAATCATGATGAGTAATTGTTCTGAGATCTTCATTTATTCCTCTTTGTTAAGAGATGGCATTTGGCATCACCATGTATGTGATTGACTGATACCTGCTGGTTAACGGATGGCTAGTTATGTTGAATAAGTTGTTAAATATATGGCACAACTTCAATTTACCAAGAGCATGACCGCAGATAGGAGGGTCGAAAGGTCGCGGATAAGGTAGAAGGTTAGTAGGTAGTGGAGTCTTGTCTTGTTTTTCGACGGGTTTAGGCTTAGTGGTATCTGTGGTAGTATTAGCCTATTCTTGTAGTATCTTGCTTTTCATTTCTGTCATCATCTGTTGTTTGTGGTATTTTGGTAATTGCACTATTTTGTTGTTATTACTGGTCCTTAATTAGTTGCTATGTTTTCTTTATGTTGTTTTCCCGTTTCATAGCTACTTCGATTTGTTTTACTCGAGCCGAGGGTCCTCCGGAAATAGCCTCTCTAACTCCACTAGGTAGGGGTTAAGGTCTACGTACACTCTCCCCTACCAAGAACCCCTTGTGGGATTTCATTGGGTATGTTGTTGTTAAATAGATGGCCTGATCTATTGTGGCATCTAGTGTGAGTTGGAGCCTAGTCTCTATGCACCTTATATGCTAATAAGCTTTCATTATGTCATTTTCCGTTATGGCCTTGGCTTAGTATTGGACAATAACAGAAAAAGTAATGGGAATAATCTTTATAATTTATCTTTTACAATATCATGACTAGTTTTAGAAGTGCTAAATATGCTTATCGCTATCCAGTCCTATGCAATAAAAGTGCTATCAGTAAGAAATATAAAAGGTATAGTTGAAGGTTTTACACTTTTCTAGTTGTAGCTGACAAGTGGTTGTTTCATGTGGAACAATCAAGCCCTTTGACTGCCCATTCTTATGACCTAGTCAGTCCCTAATACTAGTTTCAACCAACTTAGCTAGTATGAGAGCCTGATTGACAAATCTCTTTTTGGATAATTTAAAGTTCATGTTATCTTTAACCCTTTTTGTGTGTGTAATTGCTGGAACCCCAAAATGTTGAGGTTTATCCTGTTGGGAAATCAAGCCACACGGCACTTCTTATGTAGGTAGCTTTAATCATTTAGCCAGCGGGAGCATGAACTTTAGCTGTTTCTATATTGTTAATTAATGAGTTGTTTTAAATGTTCGTTTTTCCTGTTGAATAGTAAGTATCATTCACCAATACCTGATATTGCAGAGCCTTGGTCAGATGGATTTTGGTACCAGCCCAAATTTTCTTTTTTCAACTGACGATATTTCTTCTGATTAGGTGGGTTCCATTTGATGTTGCCAAGCCACTGCTCGACATGAAATCGTACATGGTTTTATCTGATTTTGCCACACAAAATGGGCAGCCTCTTCCTCCTAGTAACCTTGAAAATTATGATGAGCAAAATGATCAACAACACTTTCACGGATCAAATGATATTTTTGTGGGTGAGGATGAGGATGAGGAAATGGATGAATTTAACTATGAAGATTCAGATGATGAACTGATTGCTGAGAGCAGTAACATCCAACTGCCCAAAGTAGAAGACAGAGATGTTGGTAGCATTTTGATTGGGTTGAAGGAAGTTCGTCTGAGATACAAAGTAATGCTAATTGACCTGTCACAATAACTTCCATTTGCGCTAAATTATGTAGTCCTAATCATAGTTGCTCTAAACTGAAAAATGTGGATCACAAATGAAGTCATTTCTTAAAAGTATGTGCTTTGAAATGAAAAATGACAAACACAAATGAGAGATAGAGAAACCCAAAGAAGTATCAAGTATTATGTTGGTTCTCAAAAATGGTTATCCCGTTGAAAAATTAGGTCTTAAAGATTGAGAGTTTTGATACGCTGCTACTTTTCAAGTCTGCTTTCATGTATTTGCAACTCTTAGTACTAAATGGATAACTTGAGTAAGCACACTATTACGTTAAAACCATGCAAAAATATTTTTTACCAGCTGTTTTTACCTGATTTGTTCTTATTACTAACTGAGCTTTTTTCTTTCTTATAAGGATTTGAGGCAAGCTTTTGGTTCCCGTGAAAGGCGGTTTATGGAGACTCAACTACACAAATACATGAGGGCTGTTGGTGCTGAGCTTTCTGAAAGAATGGTTTATTCGTTGGGCTAACTCTTCAATGAGTAATACAATTTGTAGAATTTCAATGCAAGAGTTCTTGTCCTCATTGTGAATATCGTGTCCTTCTCGAGTTGTTAGGGCAGCTGCCAGAAGTTGGTTGTTCAATCGTGTATCCCTTGGTGTGTTTGGGAGATTCAAAGTAGAGGAAAATTAGTACTTTTAAGTGTTCAGTTAAGCTGCATTGTGCATTTGTCATAACGTAGAGATTTGCAGTTGGTACGTACCGCTCTGCTAGTCGACCTGGTCGAAGAAGGATCAGATTTGGGTAAAACTACTCAATAAGGTACTTTATTGGAAATCTTTTAAGGATTATATGGCTGTCTTTACCTCTTTTCCATGCATAAATGGTAGCAGAACCGTCTTCTTCTAGCGTCCTTGCAATACAATACTAATTTTATTGCAATACGGTGTACGTGTAGGGGTGGGCATGATTACCATAAAGGAAGAGTCTTTGTACTTGTTTTTCTCGAGAACTAGTTGGAGGCACAATGTTCTTGATAAAGATAAATAGTCTTTTAGTTAGCACAATAAGTGATCCATAGTGAGACACATCATTCCTTAACATCTTTTAAATTTCTAAGTATCTTATATTTTAACTTT</genome_strand>
        <mrna_strand>AAGGTTGCACCTGCGAAAAGAAAGTTATCCACTGAAGGGTCAGAGGATCTGTTATTTACCAGCAGCATCTCGTTCCAGATTGCAGCTACTTTAAGACGACAAAGAAAAGGTGTTGAACATGGAAAATCATCACAATTGGGGGCTGGGGAAAGGGGGCAAGCTGCTGATACCCCCAAAGTTATTGCTGCAACACTAGCTACCCATCTAAACTCTCTAGCAGAATCATTGGGATTATTAGTTAGAGCTTGCAACGGACATATAAACTTTTATTCTTCCGAAAGACGAGTTGATAAAGATGCCATAGTCAGCAGCCATAATGAGTTGAAGCAATTCTCATCAGGAAGCTGTAATAAACAGAGCTTCTCATCAACAGTACATGAAAATCATGAACTCAAAAAGAGGAAGTTTGAGGTTCGTCTTAAAAGGTCCAGTTTTGATCCCGAAGAATATTCCTTGTATAGGAGGTACCAGATTAGAGTGCACAATGATTCTCCTGATGAAGTCGCTGAGAGCTCATACAGGAGATTTTTGGTTGATACACCCATAATATTTGTTCCCCCATCGGGGGACCTTACTGTCCCCGCTTGTGGCTTTGGTTCTTTCCATCAGCAGTATCTGATTGATGGACGGTTGGTTGCAGTTGGAGTCATAGATATTCTCCCAAAGTGTTTGTCAAGTAAATATTTATTCTGGGATCCAGATCTTGCCTTCTTATCATTAGGTAAGTATTCAGCCCTTCAAGAAATAAGGTGGGTTACACAGAATCAAGTACATTGCCCTAGTCTCCAGTACTATTATCTGGGTTACTACATCCACTCCTGCAACAAAATGAGATACAAAGCAGCATACCGGCCTTCTGAGCTACTCTGCCCTTTGCGATATAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGTTCCATTTGATGTTGCCAAGCCACTGCTCGACATGAAATCGTACATGGTTTTATCTGATTTTGCCACACAAAATGGGCAGCCTCTTCCTCCTAGTAACCTTGAAAATTATGATGAGCAAAATGATCAACAACACTTTCACGGATCAAATGATATTTTTGTGGGTGAGGATGAGGATGAGGAAATGGATGAATTTAACTATGAAGATTCAGATGATGAACTGATTGCTGAGAGCAGTAACATCCAACTGCCCAAAGTAGAAGACAGAGATGTTGGTAGCATTTTGATTGGGTTGAAGGAAGTTCGTCTGAGATACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGAGGCAAGCTTTTGGTTCCCGTGAAAGGCGGTTTATGGAGACTCAACTACACAAATACATGAGGGCTGTTGGTGCTGAGCTTTCTGAAAGAATGGTTTATTCGTTGGGCTAACTCTTCAATGAGTAATACAATTTGTAGAATTTCAATGCAAGAGTTCTTGTCCTCATTGTGAATATCGTGTCCTTCTCGAGTTGTTAGGGCAGCTGCCAGAAGTTGGTTGTTCAATCGTGTATCCCTTGGTGTGTTTGGGAGATTCAAAGTAGAGGAAAATTAGTACTTTTAAGTGTTCAGTTAAGCTGCATTGTGCATTTGTCATAACGTAGAGATTTGCAGTTGGTACGTACCGCTCTGCTAGTCGACCTGGTCGAAGAAGGATCAGATTTGGGTAAAACTACTCAATAAGGTACTTTATTGGAAATCTTTTAAGGATTATATGGCTGTCTTTACCTCTTTTCCATGCATAAATGGTAGCAGAACCGTCTTCTTCTAGCGTCCTTGCAATACAATACTAATTTTATTGCAATACGGTGTACGTGTAGGGGTGGGCATGATTACCATAAAGGAAGAGTCTTTGTACTTGTTTTTCTCGAGAACTAGTTGGAGGCACAATGTTCTTGATAAAGATAAATAGTCTTTTAGTTAGCACAATAAGTGATCCATAGTGAGACACATCATTCCTTAACATCTTTTAAATTTCTAAGTATCTTATATTTTAACTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>6</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="15043" PGL_stop="13847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15043" e_stop="14942"/>
            <exon e_start="14167" e_stop="13847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.967" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15043" e_stop="14942" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.967" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14941" i_stop="14168" i_length="774"/>
          </intron>
          <exon e_serial="2" e_score="0.944">
            <gDNA_exon_boundary e_start="14167" e_stop="13847" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15043" stop="14942"/>
              <exon start="14167" stop="13847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGGCTCTCTCATTAGAAGACTTCCTTGTTCGTGCCCGAGTACTAAAGCTGTACCGACATGCTCTGAGAATCTCAAGGAGAGCACCTCCTCATGCTAAAG : CTGATTTGAGGCAGATTATAAGACAAGAGATGGAGAATAATAGGAATTGCAATGACAAGCAGAGAATTCGGTTCTTGATTAGTGATGGAATTGAAAGAGTGAAACGTTTAGATGAGACGCTTGATATGCAAGGCCATTGATTTAACTGTAATGTGTATATGGTATGCCTTACATCTTGCAACATCAACCCTGTTGTGACCTATCGGATTAATCAGAGACGTGCTGCAAACATAGGTGGTTCATGCGCTTTAGCCATCTCTGCTTGGTTTATACTGTTATCGCCTCAGAAGTTATTGTTTTTTTCCAACTTACCTCCAATTA</gDNA_template>
            <first_frame> *  W  L  S  H  *  K  T  S  L  F  V  P  E  Y  *  S  C  T  D  M  L  *  E  S  Q  G  E  H  L  L  M  L  K  :  L  I  *  G  R  L  *  D  K  R  W  R  I  I  G  I  A  M  T  S  R  E  F  G  S  *  L  V  M  E  L  K  E  *  N  V  *  M  R  R  L  I  C  K  A  I  D  L  T  V  M  C  I  W  Y  A  L  H  L  A  T  S  T  L  L  *  P  I  G  L  I  R  D  V  L  Q  T  *  V  V  H  A  L  *  P  S  L  L  G  L  Y  C  Y  R  L  R  S  Y  C  F  F  P  T  Y  L  Q  L </first_frame>
            <second_frame>  N  G  S  L  I  R  R  L  P  C  S  C  P  S  T  K  A  V  P  T  C  S  E  N  L  K  E  S  T  S  S  C  *  S :   *  F  E  A  D  Y  K  T  R  D  G  E  *  *  E  L  Q  *  Q  A  E  N  S  V  L  D  *  *  W  N  *  K  S  E  T  F  R  *  D  A  *  Y  A  R  P  L  I  *  L  *  C  V  Y  G  M  P  Y  I  L  Q  H  Q  P  C  C  D  L  S  D  *  S  E  T  C  C  K  H  R  W  F  M  R  F  S  H  L  C  L  V  Y  T  V  I  A  S  E  V  I  V  F  F  Q  L  T  S  N   </second_frame>
            <third_frame>   M  A  L  S  L  E  D  F  L  V  R  A  R  V  L  K  L  Y  R  H  A  L  R  I  S  R  R  A  P  P  H  A  K   : A  D  L  R  Q  I  I  R  Q  E  M  E  N  N  R  N  C  N  D  K  Q  R  I  R  F  L  I  S  D  G  I  E  R  V  K  R  L  D  E  T  L  D  M  Q  G  H  *  F  N  C  N  V  Y  M  V  C  L  T  S  C  N  I  N  P  V  V  T  Y  R  I  N  Q  R  R  A  A  N  I  G  G  S  C  A  L  A  I  S  A  W  F  I  L  L  S  P  Q  K  L  L  F  F  S  N  L  P  P  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0005H10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15041" stop="14942"/>
                    <exon start="14167" stop="14028"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MALSLEDFLVRARVLKLYRHALRISRRAPPHAKADLRQIIRQEMENNRNCNDKQRIRFLISDGIERVKRLDETLDMQGH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33320" PGL_stop="26280"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33320" e_stop="32758"/>
            <exon e_start="32521" e_stop="32372"/>
            <exon e_start="32293" e_stop="32036"/>
            <exon e_start="27688" e_stop="27602"/>
            <exon e_start="27507" e_stop="27429"/>
            <exon e_start="27061" e_stop="26955"/>
            <exon e_start="26863" e_stop="26733"/>
            <exon e_start="26654" e_stop="26280"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="33320" e_stop="32758" e_length="563"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32757" i_stop="32522" i_length="236"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32521" e_stop="32372" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32371" i_stop="32294" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32293" e_stop="32036" e_length="258"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.966">
            <gDNA_intron_boundary i_start="32035" i_stop="27689" i_length="4347"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27688" e_stop="27602" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27601" i_stop="27508" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27507" e_stop="27429" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27428" i_stop="27062" i_length="367"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="27061" e_stop="26955" e_length="107"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.772">
            <gDNA_intron_boundary i_start="26954" i_stop="26864" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="26863" e_stop="26733" e_length="131"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26732" i_stop="26655" i_length="78"/>
          </intron>
          <exon e_serial="8" e_score="0.989">
            <gDNA_exon_boundary e_start="26654" e_stop="26280" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33320" stop="32758"/>
              <exon start="32521" stop="32372"/>
              <exon start="32293" stop="32036"/>
              <exon start="27688" stop="27602"/>
              <exon start="27507" stop="27429"/>
              <exon start="27061" stop="26955"/>
              <exon start="26863" stop="26733"/>
              <exon start="26654" stop="26280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33298" stop="32792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336629" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGCGTTTTGCATACAAAAAAAAATTAATTAACATGGATACCATCGATCTTTTTCTCTATCTTTTTCTCTCTGTTTTCACCTTTTATCTCCTCCGGTGTATGGCGGCGGCCCATCTTCGCGGGCGTAAAACTCGACTCCCGCCGGGAACCCTTGGCCTCCCGTTTATCGGAGAAACCCTCCAGTTAATTTCTGCGTACAAAACGGAAAATCCTGAACCGTTCATCGATGACCGTGTTTCAAAATACGGCAGCATTTTCACGACCCATGTTTTTGGTGAACCGACGGTTTTCTCTGCTGACCCGGAAACGAACCGGTTTATTTTGCAGAATGAAGGTCGGCTTTTTGAGTCGAGTTATCCCGGTTCGATACAGAATTTACTTGGGAGATACTCTCTGTTGCTTATGAGAGGAAGTCTACACAAACGAATGCATTCATTAACTATGAGTTTTGCTAATTCTTCCATTCTTAAAGATCATCTGTTGGGCGATATAGATCGATTGGTTAGGCTTAATTTGGATTCATGGACCGGCAGGGTTTTCCTCATGGACGAGGCTAAGAAG : ATAACGTTTAATCTAACAGTGAAGCAGTTGATGAGTTTTGATCCATGTGAGTGGACAGAGAATCTGATGAAAGAGTATATGCTTGTTATTGAAGGTTTCTTCTGCATTCCTTTGCCTATTTTCTCATCCACCTATCGCAAGGCCATTCAA : GCGAGAACGAAAGTAGCGGAGGCGTTGGGATTGGTAGTGAGAGATCGGAGAAAAGAACGAGACGGAGGAGAACGAAAGAATGATATGTTGGAGGCATTGTTCGAAGGAGACGGAGTTGAAGGAGTAGGATTTTCCGATGAGGAAATTGTTGATTTTATACTGGCGTTGCTTGTTGCTGGCTATGAAACTACCTCCACCATCATGACCCTTGCTGTAAAATTCCTCACGGAGACACCCCGTGCTCTATCACTACTTAAG : GAAGAGCACGAGGAGATCAGGTTAAGAAAAGGTGAAGTTAAGTCTTTACAATGGGAAGATTACAAGTCAATGCCCTTCACTCAATGC : GTTGTTAATGAAACTCTGCGAATCGCTAACATAATTAGTGGAGTGTTCAGGAGAGCCATGACTGACATAAATATCAAAG : GTTATACCATTCCAAAAGGTTGGAAGGTTTTTGCTTCTCTCCGAGCTGTTCATCTAGACCATGAACATTTCAAAGATGCGCGTACATTTGATCCATGGAGGTGGCAG : AGTAGTGCAGGACCGACAAGCTCACCTAACGTATTCACACCATTTGGTGGTGGACCTCGTCGATGTCCTGGTTACGAGCTTGCTAGAGTGGAACTCTCTGTTTTCCTTCACCACTTGGTGACTCGTTTTAG : TTGGGTTCCGGCTGAGGCAGATAAGTTAGTTTTCTTCCCAACGACAAGGATGCTGAAGCGATATCCAATTAACGTCCAACATCGAAGCTTGTTTGAGCAGAAAGAAGAAGAGAAGGGTTCGTGAGATTGTAGAATGCAGAGTGGAGGGAGGTGTATGAAAGGTGTTAAATAAGACAATAGTATATAGGTGTTAGCATATACTTAGAAAATTAAATTATTTGTAGTGAATTGAGCAGAGATTAACATTCCTCTGATCTGCAAGGGGAATCAGGAAGATTTTATTCTGAGCAATTGGTTATTATATAATAGTAATGCACAGTTTTTAATGTATGTTAATTAGCATGATTAAAGATTTAATTGCCCTCAAAATATTTA</gDNA_template>
            <first_frame> Q  S  V  L  H  T  K  K  N  *  L  T  W  I  P  S  I  F  F  S  I  F  F  S  L  F  S  P  F  I  S  S  G  V  W  R  R  P  I  F  A  G  V  K  L  D  S  R  R  E  P  L  A  S  R  L  S  E  K  P  S  S  *  F  L  R  T  K  R  K  I  L  N  R  S  S  M  T  V  F  Q  N  T  A  A  F  S  R  P  M  F  L  V  N  R  R  F  S  L  L  T  R  K  R  T  G  L  F  C  R  M  K  V  G  F  L  S  R  V  I  P  V  R  Y  R  I  Y  L  G  D  T  L  C  C  L  *  E  E  V  Y  T  N  E  C  I  H  *  L  *  V  L  L  I  L  P  F  L  K  I  I  C  W  A  I  *  I  D  W  L  G  L  I  W  I  H  G  P  A  G  F  S  S  W  T  R  L  R  R :   *  R  L  I  *  Q  *  S  S  *  *  V  L  I  H  V  S  G  Q  R  I  *  *  K  S  I  C  L  L  L  K  V  S  S  A  F  L  C  L  F  S  H  P  P  I  A  R  P  F  K :   R  E  R  K  *  R  R  R  W  D  W  *  *  E  I  G  E  K  N  E  T  E  E  N  E  R  M  I  C  W  R  H  C  S  K  E  T  E  L  K  E  *  D  F  P  M  R  K  L  L  I  L  Y  W  R  C  L  L  L  A  M  K  L  P  P  P  S  *  P  L  L  *  N  S  S  R  R  H  P  V  L  Y  H  Y  L  R :   K  S  T  R  R  S  G  *  E  K  V  K  L  S  L  Y  N  G  K  I  T  S  Q  C  P  S  L  N  A :   L  L  M  K  L  C  E  S  L  T  *  L  V  E  C  S  G  E  P  *  L  T  *  I  S  K  :  V  I  P  F  Q  K  V  G  R  F  L  L  L  S  E  L  F  I  *  T  M  N  I  S  K  M  R  V  H  L  I  H  G  G  G  R :   V  V  Q  D  R  Q  A  H  L  T  Y  S  H  H  L  V  V  D  L  V  D  V  L  V  T  S  L  L  E  W  N  S  L  F  S  F  T  T  W  *  L  V  L   : V  G  F  R  L  R  Q  I  S  *  F  S  S  Q  R  Q  G  C  *  S  D  I  Q  L  T  S  N  I  E  A  C  L  S  R  K  K  K  R  R  V  R  E  I  V  E  C  R  V  E  G  G  V  *  K  V  L  N  K  T  I  V  Y  R  C  *  H  I  L  R  K  L  N  Y  L  *  *  I  E  Q  R  L  T  F  L  *  S  A  R  G  I  R  K  I  L  F  *  A  I  G  Y  Y  I  I  V  M  H  S  F  *  C  M  L  I  S  M  I  K  D  L  I  A  L  K  I  F  </first_frame>
            <second_frame>  R  A  F  C  I  Q  K  K  I  N  *  H  G  Y  H  R  S  F  S  L  S  F  S  L  C  F  H  L  L  S  P  P  V  Y  G  G  G  P  S  S  R  A  *  N  S  T  P  A  G  N  P  W  P  P  V  Y  R  R  N  P  P  V  N  F  C  V  Q  N  G  K  S  *  T  V  H  R  *  P  C  F  K  I  R  Q  H  F  H  D  P  C  F  W  *  T  D  G  F  L  C  *  P  G  N  E  P  V  Y  F  A  E  *  R  S  A  F  *  V  E  L  S  R  F  D  T  E  F  T  W  E  I  L  S  V  A  Y  E  R  K  S  T  Q  T  N  A  F  I  N  Y  E  F  C  *  F  F  H  S  *  R  S  S  V  G  R  Y  R  S  I  G  *  A  *  F  G  F  M  D  R  Q  G  F  P  H  G  R  G  *  E   : D  N  V  *  S  N  S  E  A  V  D  E  F  *  S  M  *  V  D  R  E  S  D  E  R  V  Y  A  C  Y  *  R  F  L  L  H  S  F  A  Y  F  L  I  H  L  S  Q  G  H  S   : S  E  N  E  S  S  G  G  V  G  I  G  S  E  R  S  E  K  R  T  R  R  R  R  T  K  E  *  Y  V  G  G  I  V  R  R  R  R  S  *  R  S  R  I  F  R  *  G  N  C  *  F  Y  T  G  V  A  C  C  W  L  *  N  Y  L  H  H  H  D  P  C  C  K  I  P  H  G  D  T  P  C  S  I  T  T  *   : G  R  A  R  G  D  Q  V  K  K  R  *  S  *  V  F  T  M  G  R  L  Q  V  N  A  L  H  S  M   : R  C  *  *  N  S  A  N  R  *  H  N  *  W  S  V  Q  E  S  H  D  *  H  K  Y  Q  R :   L  Y  H  S  K  R  L  E  G  F  C  F  S  P  S  C  S  S  R  P  *  T  F  Q  R  C  A  Y  I  *  S  M  E  V  A   : E  *  C  R  T  D  K  L  T  *  R  I  H  T  I  W  W  W  T  S  S  M  S  W  L  R  A  C  *  S  G  T  L  C  F  P  S  P  L  G  D  S  F  *  :  L  G  S  G  *  G  R  *  V  S  F  L  P  N  D  K  D  A  E  A  I  S  N  *  R  P  T  S  K  L  V  *  A  E  R  R  R  E  G  F  V  R  L  *  N  A  E  W  R  E  V  Y  E  R  C  *  I  R  Q  *  Y  I  G  V  S  I  Y  L  E  N  *  I  I  C  S  E  L  S  R  D  *  H  S  S  D  L  Q  G  E  S  G  R  F  Y  S  E  Q  L  V  I  I  *  *  *  C  T  V  F  N  V  C  *  L  A  *  L  K  I  *  L  P  S  K  Y  L </second_frame>
            <third_frame>   E  R  F  A  Y  K  K  K  L  I  N  M  D  T  I  D  L  F  L  Y  L  F  L  S  V  F  T  F  Y  L  L  R  C  M  A  A  A  H  L  R  G  R  K  T  R  L  P  P  G  T  L  G  L  P  F  I  G  E  T  L  Q  L  I  S  A  Y  K  T  E  N  P  E  P  F  I  D  D  R  V  S  K  Y  G  S  I  F  T  T  H  V  F  G  E  P  T  V  F  S  A  D  P  E  T  N  R  F  I  L  Q  N  E  G  R  L  F  E  S  S  Y  P  G  S  I  Q  N  L  L  G  R  Y  S  L  L  L  M  R  G  S  L  H  K  R  M  H  S  L  T  M  S  F  A  N  S  S  I  L  K  D  H  L  L  G  D  I  D  R  L  V  R  L  N  L  D  S  W  T  G  R  V  F  L  M  D  E  A  K  K  :  I  T  F  N  L  T  V  K  Q  L  M  S  F  D  P  C  E  W  T  E  N  L  M  K  E  Y  M  L  V  I  E  G  F  F  C  I  P  L  P  I  F  S  S  T  Y  R  K  A  I  Q  :  A  R  T  K  V  A  E  A  L  G  L  V  V  R  D  R  R  K  E  R  D  G  G  E  R  K  N  D  M  L  E  A  L  F  E  G  D  G  V  E  G  V  G  F  S  D  E  E  I  V  D  F  I  L  A  L  L  V  A  G  Y  E  T  T  S  T  I  M  T  L  A  V  K  F  L  T  E  T  P  R  A  L  S  L  L  K  :  E  E  H  E  E  I  R  L  R  K  G  E  V  K  S  L  Q  W  E  D  Y  K  S  M  P  F  T  Q  C  :  V  V  N  E  T  L  R  I  A  N  I  I  S  G  V  F  R  R  A  M  T  D  I  N  I  K   : G  Y  T  I  P  K  G  W  K  V  F  A  S  L  R  A  V  H  L  D  H  E  H  F  K  D  A  R  T  F  D  P  W  R  W  Q  :  S  S  A  G  P  T  S  S  P  N  V  F  T  P  F  G  G  G  P  R  R  C  P  G  Y  E  L  A  R  V  E  L  S  V  F  L  H  H  L  V  T  R  F  S :   W  V  P  A  E  A  D  K  L  V  F  F  P  T  T  R  M  L  K  R  Y  P  I  N  V  Q  H  R  S  L  F  E  Q  K  E  E  E  K  G  S  *  D  C  R  M  Q  S  G  G  R  C  M  K  G  V  K  *  D  N  S  I  *  V  L  A  Y  T  *  K  I  K  L  F  V  V  N  *  A  E  I  N  I  P  L  I  C  K  G  N  Q  E  D  F  I  L  S  N  W  L  L  Y  N  S  N  A  Q  F  L  M  Y  V  N  *  H  D  *  R  F  N  C  P  Q  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0005H10.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33318" stop="32758"/>
                    <exon start="32521" stop="32372"/>
                    <exon start="32293" stop="32036"/>
                    <exon start="27688" stop="27602"/>
                    <exon start="27507" stop="27429"/>
                    <exon start="27061" stop="26955"/>
                    <exon start="26863" stop="26733"/>
                    <exon start="26654" stop="26531"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERFAYKKKLINMDTIDLFLYLFLSVFTFYLLRCMAAAHLRGRKTRLPPGTLGLPFIGETLQLISAYKTENPEPFIDDRVSKYGSIFTTHVFGEPTVFSADPETNRFILQNEGRLFESSYPGSIQNLLGRYSLLLMRGSLHKRMHSLTMSFANSSILKDHLLGDIDRLVRLNLDSWTGRVFLMDEAKKITFNLTVKQLMSFDPCEWTENLMKEYMLVIEGFFCIPLPIFSSTYRKAIQARTKVAEALGLVVRDRRKERDGGERKNDMLEALFEGDGVEGVGFSDEEIVDFILALLVAGYETTSTIMTLAVKFLTETPRALSLLKEEHEEIRLRKGEVKSLQWEDYKSMPFTQCVVNETLRIANIISGVFRRAMTDINIKGYTIPKGWKVFASLRAVHLDHEHFKDARTFDPWRWQSSAGPTSSPNVFTPFGGGPRRCPGYELARVELSVFLHHLVTRFSWVPAEADKLVFFPTTRMLKRYPINVQHRSLFEQKEEEKGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45721" PGL_stop="37793"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45721" e_stop="45333"/>
            <exon e_start="37920" e_stop="37793"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.933"/>
          <exon-only e_score="0.891"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="45721" e_stop="45333" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="45332" i_stop="37921" i_length="7412"/>
          </intron>
          <exon e_serial="2" e_score="0.891">
            <gDNA_exon_boundary e_start="37920" e_stop="37793" e_length="128"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45721" stop="45333"/>
              <exon start="37920" stop="37793"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346023" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAACACTTAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACGGGCATGACGGACCGTCACGGAGACTTCAGTGAAAATCCACTCTCTGAACTTTGCGACGACCTGCAGAACGGACCGTCGCAGGCACGACGGCCCGTCACAGGTTGCGCAAATCCCAGGCAGAATCGGATTTCCTTACACGTTTTAAGGGACGTTTTTGGACTATTCTTTCCTTAATTATAAATTTCGTGGGTTTATATTAATAACTCAAATTCTTGGGGGTTAAAAGAGGTAACCCTAAGTTAATTAGTGGGGTATTATCGTCATCTTTTATTCTTAATTATATACTAATTAGGGTAAAAGAAAGAGG : GTTTTGAAACAAGACCCCTCGACGGTACGTCGTGCTCATGACGGTCCGTCGTGGGTTCCGTCGTCTCAGCCTGTTTTTCCAGAAATAAAATCTGCTGCTCAAAACGACTAAACAGGTCGTTACAATAT</gDNA_template>
            <first_frame> K  T  L  R  K  S  E  I  G  Y  *  K  S  T  L  *  T  S  *  R  N  G  R  T  D  R  H  G  H  D  G  P  S  R  R  L  Q  *  K  S  T  L  *  T  L  R  R  P  A  E  R  T  V  A  G  T  T  A  R  H  R  L  R  K  S  Q  A  E  S  D  F  L  T  R  F  K  G  R  F  W  T  I  L  S  L  I  I  N  F  V  G  L  Y  *  *  L  K  F  L  G  V  K  R  G  N  P  K  L  I  S  G  V  L  S  S  S  F  I  L  N  Y  I  L  I  R  V  K  E  R  G :   F  *  N  K  T  P  R  R  Y  V  V  L  M  T  V  R  R  G  F  R  R  L  S  L  F  F  Q  K  *  N  L  L  L  K  T  T  K  Q  V  V  T  I  </first_frame>
            <second_frame>  K  H  L  E  N  L  K  L  G  T  E  N  R  L  S  E  L  R  D  G  M  A  G  R  T  V  T  G  M  T  D  R  H  G  D  F  S  E  N  P  L  S  E  L  C  D  D  L  Q  N  G  P  S  Q  A  R  R  P  V  T  G  C  A  N  P  R  Q  N  R  I  S  L  H  V  L  R  D  V  F  G  L  F  F  P  *  L  *  I  S  W  V  Y  I  N  N  S  N  S  W  G  L  K  E  V  T  L  S  *  L  V  G  Y  Y  R  H  L  L  F  L  I  I  Y  *  L  G  *  K  K  E   : G  F  E  T  R  P  L  D  G  T  S  C  S  *  R  S  V  V  G  S  V  V  S  A  C  F  S  R  N  K  I  C  C  S  K  R  L  N  R  S  L  Q  Y </second_frame>
            <third_frame>   N  T  *  K  I  *  N  W  V  L  K  I  D  S  L  N  F  V  T  E  W  Q  D  G  P  S  R  A  *  R  T  V  T  E  T  S  V  K  I  H  S  L  N  F  A  T  T  C  R  T  D  R  R  R  H  D  G  P  S  Q  V  A  Q  I  P  G  R  I  G  F  P  Y  T  F  *  G  T  F  L  D  Y  S  F  L  N  Y  K  F  R  G  F  I  L  I  T  Q  I  L  G  G  *  K  R  *  P  *  V  N  *  W  G  I  I  V  I  F  Y  S  *  L  Y  T  N  *  G  K  R  K  R  :  V  L  K  Q  D  P  S  T  V  R  R  A  H  D  G  P  S  W  V  P  S  S  Q  P  V  F  P  E  I  K  S  A  A  Q  N  D  *  T  G  R  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0005H10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45720" stop="45466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KHLENLKLGTENRLSELRDGMAGRTVTGMTDRHGDFSENPLSELCDDLQNGPSQARRPVTGCANPRQNRISLHVLRDVFGLFFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="45021" e_stop="44804"/>
            <exon e_start="44753" e_stop="44463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.968"/>
          <exon-only e_score="0.887"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="45021" e_stop="44804" e_length="218"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44803" i_stop="44754" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.887">
            <gDNA_exon_boundary e_start="44753" e_stop="44463" e_length="291"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45021" stop="44804"/>
              <exon start="44753" stop="44463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGATAATGATGATGCCTTGGTATGAAAGAAGGCTTGATGAATGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACTCCAGGATAGAAT : GGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGGGAATAAAGATAATGAATCTTGAAATATGATAATATATCCAATCTAATAAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGCTGTTGTAACCAAGGGTTATAGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</gDNA_template>
            <first_frame> P  N  L  L  *  *  *  *  C  L  G  M  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  *  L  Q  D  R  M :   E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  R  *  *  I  L  K  Y  D  N  I  S  N  L  I  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  C  C  C  N  Q  G  L  *  *  L  *  M  L  H  V  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </first_frame>
            <second_frame>  L  I  Y  F  D  N  D  D  A  L  V  *  K  K  A  *  *  M  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  S  R  I  E   : W  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  Y  I  E  E  R  S  V  T  Y  R  H  E  G  N  K  D  N  E  S  *  N  M  I  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  A  V  V  T  K  G  Y  S  N  Y  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  </second_frame>
            <third_frame>   *  S  T  L  I  M  M  M  P  W  Y  E  R  R  L  D  E  *  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  G  C  H  V  L  T  P  G  *  N  :  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  L  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  N  L  E  I  *  *  Y  I  Q  S  N  K  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  L  L  *  P  R  V  I  V  T  I  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0005H10.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="95294" PGL_stop="89162"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95294" e_stop="94411"/>
            <exon e_start="90624" e_stop="90303"/>
            <exon e_start="89887" e_stop="89162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95294" e_stop="94411" e_length="884"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="94410" i_stop="90625" i_length="3786"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90624" e_stop="90303" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.792" acc_prob="0.982">
            <gDNA_intron_boundary i_start="90302" i_stop="89888" i_length="415"/>
          </intron>
          <exon e_serial="3" e_score="0.999">
            <gDNA_exon_boundary e_start="89887" e_stop="89162" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95294" stop="94411"/>
              <exon start="90624" stop="90303"/>
              <exon start="89887" stop="89162"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320158" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTGCACCTGCGAAAAGAAAGTTATCCACTGAAGGGTCAGAGGATCTGTTATTTACCAGCAGCATCTCGTTCCAGATTGCAGCTACTTTAAGACGACAAAGAAAAGGTGTTGAACATGGAAAATCATCACAATTGGGGGCTGGGGAAAGGGGGCAAGCTGCTGATACCCCCAAAGTTATTGCTGCAACACTAGCTACCCATCTAAACTCTCTAGCAGAATCATTGGGATTATTAGTTAGAGCTTGCAACGGACATATAAACTTTTATTCTTCCGAAAGACGAGTTGATAAAGATGCCATAGTCAGCAGCCATAATGAGTTGAAGCAATTCTCATCAGGAAGCTGTAATAAACAGAGCTTCTCATCAACAGTACATGAAAATCATGAACTCAAAAAGAGGAAGTTTGAGGTTCGTCTTAAAAGGTCCAGTTTTGATCCCGAAGAATATTCCTTGTATAGGAGGTACCAGATTAGAGTGCACAATGATTCTCCTGATGAAGTCGCTGAGAGCTCATACAGGAGATTTTTGGTTGATACACCCATAATATTTGTTCCCCCATCGGGGGACCTTACTGTCCCCGCTTGTGGCTTTGGTTCTTTCCATCAGCAGTATCTGATTGATGGACGGTTGGTTGCAGTTGGAGTCATAGATATTCTCCCAAAGTGTTTGTCAAGTAAATATTTATTCTGGGATCCAGATCTTGCCTTCTTATCATTAGGTAAGTATTCAGCCCTTCAAGAAATAAGGTGGGTTACACAGAATCAAGTACATTGCCCTAGTCTCCAGTACTATTATCTGGGTTACTACATCCACTCCTGCAACAAAATGAGATACAAAGCAGCATACCGGCCTTCTGAGCTACTCTGCCCTTTGCGATATAA : GTGGGTTCCATTTGATGTTGCCAAGCCACTGCTCGACATGAAATCGTACATGGTTTTATCTGATTTTGCCACACAAAATGGGCAGCCTCTTCCTCCTAGTAACCTTGAAAATTATGATGAGCAAAATGATCAACAACACTTTCACGGATCAAATGATATTTTTGTGGGTGAGGATGAGGATGAGGAAATGGATGAATTTAACTATGAAGATTCAGATGATGAACTGATTGCTGAGAGCAGTAACATCCAACTGCCCAAAGTAGAAGACAGAGATGTTGGTAGCATTTTGATTGGGTTGAAGGAAGTTCGTCTGAGATACAAA : GATTTGAGGCAAGCTTTTGGTTCCCGTGAAAGGCGGTTTATGGAGACTCAACTACACAAATACATGAGGGCTGTTGGTGCTGAGCTTTCTGAAAGAATGGTTTATTCGTTGGGCTAACTCTTCAATGAGTAATACAATTTGTAGAATTTCAATGCAAGAGTTCTTGTCCTCATTGTGAATATCGTGTCCTTCTCGAGTTGTTAGGGCAGCTGCCAGAAGTTGGTTGTTCAATCGTGTATCCCTTGGTGTGTTTGGGAGATTCAAAGTAGAGGAAAATTAGTACTTTTAAGTGTTCAGTTAAGCTGCATTGTGCATTTGTCATAACGTAGAGATTTGCAGTTGGTACGTACCGCTCTGCTAGTCGACCTGGTCGAAGAAGGATCAGATTTGGGTAAAACTACTCAATAAGGTACTTTATTGGAAATCTTTTAAGGATTATATGGCTGTCTTTACCTCTTTTCCATGCATAAATGGTAGCAGAACCGTCTTCTTCTAGCGTCCTTGCAATACAATACTAATTTTATTGCAATACGGTGTACGTGTAGGGGTGGGCATGATTACCATAAAGGAAGAGTCTTTGTACTTGTTTTTCTCGAGAACTAGTTGGAGGCACAATGTTCTTGATAAAGATAAATAGTCTTTTAGTTAGCACAATAAGTGATCCATAGTGAGACACATCATTCCTTAACATCTTTTAAATTTCTAAGTATCTTATATTTTAACTTT</gDNA_template>
            <first_frame> K  V  A  P  A  K  R  K  L  S  T  E  G  S  E  D  L  L  F  T  S  S  I  S  F  Q  I  A  A  T  L  R  R  Q  R  K  G  V  E  H  G  K  S  S  Q  L  G  A  G  E  R  G  Q  A  A  D  T  P  K  V  I  A  A  T  L  A  T  H  L  N  S  L  A  E  S  L  G  L  L  V  R  A  C  N  G  H  I  N  F  Y  S  S  E  R  R  V  D  K  D  A  I  V  S  S  H  N  E  L  K  Q  F  S  S  G  S  C  N  K  Q  S  F  S  S  T  V  H  E  N  H  E  L  K  K  R  K  F  E  V  R  L  K  R  S  S  F  D  P  E  E  Y  S  L  Y  R  R  Y  Q  I  R  V  H  N  D  S  P  D  E  V  A  E  S  S  Y  R  R  F  L  V  D  T  P  I  I  F  V  P  P  S  G  D  L  T  V  P  A  C  G  F  G  S  F  H  Q  Q  Y  L  I  D  G  R  L  V  A  V  G  V  I  D  I  L  P  K  C  L  S  S  K  Y  L  F  W  D  P  D  L  A  F  L  S  L  G  K  Y  S  A  L  Q  E  I  R  W  V  T  Q  N  Q  V  H  C  P  S  L  Q  Y  Y  Y  L  G  Y  Y  I  H  S  C  N  K  M  R  Y  K  A  A  Y  R  P  S  E  L  L  C  P  L  R  Y  K :   W  V  P  F  D  V  A  K  P  L  L  D  M  K  S  Y  M  V  L  S  D  F  A  T  Q  N  G  Q  P  L  P  P  S  N  L  E  N  Y  D  E  Q  N  D  Q  Q  H  F  H  G  S  N  D  I  F  V  G  E  D  E  D  E  E  M  D  E  F  N  Y  E  D  S  D  D  E  L  I  A  E  S  S  N  I  Q  L  P  K  V  E  D  R  D  V  G  S  I  L  I  G  L  K  E  V  R  L  R  Y  K  :  D  L  R  Q  A  F  G  S  R  E  R  R  F  M  E  T  Q  L  H  K  Y  M  R  A  V  G  A  E  L  S  E  R  M  V  Y  S  L  G  *  L  F  N  E  *  Y  N  L  *  N  F  N  A  R  V  L  V  L  I  V  N  I  V  S  F  S  S  C  *  G  S  C  Q  K  L  V  V  Q  S  C  I  P  W  C  V  W  E  I  Q  S  R  G  K  L  V  L  L  S  V  Q  L  S  C  I  V  H  L  S  *  R  R  D  L  Q  L  V  R  T  A  L  L  V  D  L  V  E  E  G  S  D  L  G  K  T  T  Q  *  G  T  L  L  E  I  F  *  G  L  Y  G  C  L  Y  L  F  S  M  H  K  W  *  Q  N  R  L  L  L  A  S  L  Q  Y  N  T  N  F  I  A  I  R  C  T  C  R  G  G  H  D  Y  H  K  G  R  V  F  V  L  V  F  L  E  N  *  L  E  A  Q  C  S  *  *  R  *  I  V  F  *  L  A  Q  *  V  I  H  S  E  T  H  H  S  L  T  S  F  K  F  L  S  I  L  Y  F  N  F </first_frame>
            <second_frame>  R  L  H  L  R  K  E  S  Y  P  L  K  G  Q  R  I  C  Y  L  P  A  A  S  R  S  R  L  Q  L  L  *  D  D  K  E  K  V  L  N  M  E  N  H  H  N  W  G  L  G  K  G  G  K  L  L  I  P  P  K  L  L  L  Q  H  *  L  P  I  *  T  L  *  Q  N  H  W  D  Y  *  L  E  L  A  T  D  I  *  T  F  I  L  P  K  D  E  L  I  K  M  P  *  S  A  A  I  M  S  *  S  N  S  H  Q  E  A  V  I  N  R  A  S  H  Q  Q  Y  M  K  I  M  N  S  K  R  G  S  L  R  F  V  L  K  G  P  V  L  I  P  K  N  I  P  C  I  G  G  T  R  L  E  C  T  M  I  L  L  M  K  S  L  R  A  H  T  G  D  F  W  L  I  H  P  *  Y  L  F  P  H  R  G  T  L  L  S  P  L  V  A  L  V  L  S  I  S  S  I  *  L  M  D  G  W  L  Q  L  E  S  *  I  F  S  Q  S  V  C  Q  V  N  I  Y  S  G  I  Q  I  L  P  S  Y  H  *  V  S  I  Q  P  F  K  K  *  G  G  L  H  R  I  K  Y  I  A  L  V  S  S  T  I  I  W  V  T  T  S  T  P  A  T  K  *  D  T  K  Q  H  T  G  L  L  S  Y  S  A  L  C  D  I   : S  G  F  H  L  M  L  P  S  H  C  S  T  *  N  R  T  W  F  Y  L  I  L  P  H  K  M  G  S  L  F  L  L  V  T  L  K  I  M  M  S  K  M  I  N  N  T  F  T  D  Q  M  I  F  L  W  V  R  M  R  M  R  K  W  M  N  L  T  M  K  I  Q  M  M  N  *  L  L  R  A  V  T  S  N  C  P  K  *  K  T  E  M  L  V  A  F  *  L  G  *  R  K  F  V  *  D  T  K :   I  *  G  K  L  L  V  P  V  K  G  G  L  W  R  L  N  Y  T  N  T  *  G  L  L  V  L  S  F  L  K  E  W  F  I  R  W  A  N  S  S  M  S  N  T  I  C  R  I  S  M  Q  E  F  L  S  S  L  *  I  S  C  P  S  R  V  V  R  A  A  A  R  S  W  L  F  N  R  V  S  L  G  V  F  G  R  F  K  V  E  E  N  *  Y  F  *  V  F  S  *  A  A  L  C  I  C  H  N  V  E  I  C  S  W  Y  V  P  L  C  *  S  T  W  S  K  K  D  Q  I  W  V  K  L  L  N  K  V  L  Y  W  K  S  F  K  D  Y  M  A  V  F  T  S  F  P  C  I  N  G  S  R  T  V  F  F  *  R  P  C  N  T  I  L  I  L  L  Q  Y  G  V  R  V  G  V  G  M  I  T  I  K  E  E  S  L  Y  L  F  F  S  R  T  S  W  R  H  N  V  L  D  K  D  K  *  S  F  S  *  H  N  K  *  S  I  V  R  H  I  I  P  *  H  L  L  N  F  *  V  S  Y  I  L  T   </second_frame>
            <third_frame>   G  C  T  C  E  K  K  V  I  H  *  R  V  R  G  S  V  I  Y  Q  Q  H  L  V  P  D  C  S  Y  F  K  T  T  K  K  R  C  *  T  W  K  I  I  T  I  G  G  W  G  K  G  A  S  C  *  Y  P  Q  S  Y  C  C  N  T  S  Y  P  S  K  L  S  S  R  I  I  G  I  I  S  *  S  L  Q  R  T  Y  K  L  L  F  F  R  K  T  S  *  *  R  C  H  S  Q  Q  P  *  *  V  E  A  I  L  I  R  K  L  *  *  T  E  L  L  I  N  S  T  *  K  S  *  T  Q  K  E  E  V  *  G  S  S  *  K  V  Q  F  *  S  R  R  I  F  L  V  *  E  V  P  D  *  S  A  Q  *  F  S  *  *  S  R  *  E  L  I  Q  E  I  F  G  *  Y  T  H  N  I  C  S  P  I  G  G  P  Y  C  P  R  L  W  L  W  F  F  P  S  A  V  S  D  *  W  T  V  G  C  S  W  S  H  R  Y  S  P  K  V  F  V  K  *  I  F  I  L  G  S  R  S  C  L  L  I  I  R  *  V  F  S  P  S  R  N  K  V  G  Y  T  E  S  S  T  L  P  *  S  P  V  L  L  S  G  L  L  H  P  L  L  Q  Q  N  E  I  Q  S  S  I  P  A  F  *  A  T  L  P  F  A  I  *  :  V  G  S  I  *  C  C  Q  A  T  A  R  H  E  I  V  H  G  F  I  *  F  C  H  T  K  W  A  A  S  S  S  *  *  P  *  K  L  *  *  A  K  *  S  T  T  L  S  R  I  K  *  Y  F  C  G  *  G  *  G  *  G  N  G  *  I  *  L  *  R  F  R  *  *  T  D  C  *  E  Q  *  H  P  T  A  Q  S  R  R  Q  R  C  W  *  H  F  D  W  V  E  G  S  S  S  E  I  Q   : R  F  E  A  S  F  W  F  P  *  K  A  V  Y  G  D  S  T  T  Q  I  H  E  G  C  W  C  *  A  F  *  K  N  G  L  F  V  G  L  T  L  Q  *  V  I  Q  F  V  E  F  Q  C  K  S  S  C  P  H  C  E  Y  R  V  L  L  E  L  L  G  Q  L  P  E  V  G  C  S  I  V  Y  P  L  V  C  L  G  D  S  K  *  R  K  I  S  T  F  K  C  S  V  K  L  H  C  A  F  V  I  T  *  R  F  A  V  G  T  Y  R  S  A  S  R  P  G  R  R  R  I  R  F  G  *  N  Y  S  I  R  Y  F  I  G  N  L  L  R  I  I  W  L  S  L  P  L  F  H  A  *  M  V  A  E  P  S  S  S  S  V  L  A  I  Q  Y  *  F  Y  C  N  T  V  Y  V  *  G  W  A  *  L  P  *  R  K  S  L  C  T  C  F  S  R  E  L  V  G  G  T  M  F  L  I  K  I  N  S  L  L  V  S  T  I  S  D  P  *  *  D  T  S  F  L  N  I  F  *  I  S  K  Y  L  I  F  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0005H10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95294" stop="94411"/>
                    <exon start="90624" stop="90303"/>
                    <exon start="89887" stop="89771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1320</number_coding_nucleotides>
                  <number_encoded_amino_acids>440</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KVAPAKRKLSTEGSEDLLFTSSISFQIAATLRRQRKGVEHGKSSQLGAGERGQAADTPKVIAATLATHLNSLAESLGLLVRACNGHINFYSSERRVDKDAIVSSHNELKQFSSGSCNKQSFSSTVHENHELKKRKFEVRLKRSSFDPEEYSLYRRYQIRVHNDSPDEVAESSYRRFLVDTPIIFVPPSGDLTVPACGFGSFHQQYLIDGRLVAVGVIDILPKCLSSKYLFWDPDLAFLSLGKYSALQEIRWVTQNQVHCPSLQYYYLGYYIHSCNKMRYKAAYRPSELLCPLRYKWVPFDVAKPLLDMKSYMVLSDFATQNGQPLPPSNLENYDEQNDQQHFHGSNDIFVGEDEDEEMDEFNYEDSDDELIAESSNIQLPKVEDRDVGSILIGLKEVRLRYKDLRQAFGSRERRFMETQLHKYMRAVGAELSERMVYSLG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 72 chains have been computed
$ 
$ memory statistics:
$ 12416 bytes spliced alignments in total
$ 6 spliced alignments have been stored
$ 2069 bytes was the average size of a spliced alignment
$ 9528 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2382 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 104 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:40:46
-->
