<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-17 02:26:15"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319391" ref_strand="+" ref_description="SGN-U319391        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, weak similarity to DNA-directed RNA polymerase I 49 kDa polypeptide (EC 2.7.7.6) (A49) (Swiss-Prot:O14086) (Schizosaccharomyces pombe); similar to Nuclear pore complex protein Nup107 (Nucleoporin Nup107) (107 kDa nucleoporin) (p105) (Swiss-Prot:P52590) (Rattus norvegicus) | chr3:4600499-4602493 REVERSE | Aliases: MDC16.6(evalue: 8e-85, score=311) genbank/nr: gi|15231416|ref|NP_188010.1| expressed protein [Arabidopsis thaliana] gi|11994365|dbj|BAB02324.1| gene_id:MDC16.6~similar to unknown protein~sp|O14086 [Arabidopsis thaliana] gi|13430584|gb|AAK25914.1| unknown protein [Arabidopsis thaliana] gi|14532856|gb|AAK64110.1| unknown protein [Arabidopsis thaliana](evalue: 7e-83, score=311)">
      <seq>gattacagtagggtttatgcttgttgctcctcaccttcctcctccttgtggctaaacacaaagagaagaagaagacgctagaggaacaaaaccctagcgaagtagaaggcaaaatgagcgaatcgattaagaagaagtcgaagaagaagaagaaggagacgcatactgtgacaatggaaaccatcgctgaaaatcctaataatatttctccgatggttggttattttccatcaggttatgaccctttaaggaacacaaatgacggtgtggaggaattgagtactaagttgtataggaatgttagaaggaataatcggttacaggttgtggtgagcccttatgggtcgcaggtcgattttgttgggactaattattctggcgaggcgacgtctgctcagttgtgtacttattcgcttgggatactggataaggaaactcaaactctcaagattgttcctattgcagctaacaagataattaggttggaacctagagttagagggtcagaagtaccggatgctgaagatccagatactgccaagcaagaactcactgcagaagagaggaatgacaaaatgagagagttaactcaaatgtactcatcaaagaagtctatacggcaggctaggaagcttgattccctgcgtcaacaagaagatactggaaatcaagaggaatttgacaggaatatagctggagcaataaataaagaggctcttgaagtaactgttgcaacagacagtgctcggaatataccaccacatgatctagatgccacaataccccagttggcatatccactagacagaattatttccaaaggagagtgggattttcttttggatatttttgaactcacggaagctggagcagaaatgacacctgatctttatccaagctttgttcgcaacagatcctacaaattggaacatatacaggatgaagatgagaagaaaaggctggcaggcatactttcattcattactcatcttgttaagttcaaggataaacattctatggatggtgtatcatcggcaaagcatcacaagtttcctggcatcttgtcccagaagttcacttcaatgttttccatttcagattcaaaaaggctgccggaagagaaagtaactcttcttatcaactatgtgttggttcttactctctttgctgatgactttcgtagtgatccatctgatatagccaaagatttgagaattaatgctgtagcactgcggcctttctatgagtacttaggttgcaagcttgttcgtgagaaaaacattgtgttggctacacttcctgttccgcttgtatttccaggtgtaaggaggaagagaagaaggtagatttggttttaacaggtaaccctcagacattgagagcccatgaactaccagcattctctgttgtcagttttgtcatatttttttgccatcaattttgaatatctatgaactgaaagttgaaaactcgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="7063" stop="12987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7362" g_stop="7834" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7835" i_stop="8953" i_length="1119">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8954" g_stop="9103" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="623" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9104" i_stop="11705" i_length="2602">
            <donor d_prob="0.844" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11706" g_stop="12020" g_length="315"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="938" r_length="315" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12021" i_stop="12150" i_length="130">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12151" g_stop="12701" g_length="551"/>
          <reference_exon_boundary r_type="cDNA" r_start="939" r_stop="1489" r_length="551" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U319391" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319391" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7362" e_stop="7834"/>
          <exon e_start="8954" e_stop="9103"/>
          <exon e_start="11706" e_stop="12020"/>
          <exon e_start="12151" e_stop="12701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTACAGTAGGGTTTATGCTTGTTGCTCCTCACCTTCCTCCTCCTTGTGGCTAAACACAAAGAGAAGAAGAAGACGCTAGAGGAACAAAACCCTAGCGAAGTAGAAGGCAAAATGGGCGAATCGATTAAGAAGAAGTCGAAGAAGAAGAAGAAGGAGACGCATACTGTGACAATGGAAACCATCGCTGAAAATCCTAATAATATTTCTCCGATGGTTGGTTATTTTCCATCAGGTTATGACCCTTTAAGGAACACAAATGACGGTGTGGAGGAATTGAGTACTAAGTTGTATAGGAATGTTAGAAGGAATAATCGGTTACAGGTTGTGGTGAGCCCTTATGGGTCGCAGGTCGATTTTGTTGGGACTAATTATTCTGGCGAGGCGACGTCTGCTCAGTTGTGTACTTATTCGCTTGGGATACTGGATAAGGAAACTCAAACTCTCAAGATTGTTCCTATTGCAGCTAACAAGGTAATTTTTTTTTGGTTGTTTGGAAGGTATTGTATCATGAGAATTGTTTATGTTTTAGTGTACAAGGTAGATTTGTTTTCTCTCTGGTTATTGTGTTTGGTTGGTGGGTAGAAGAAGCTAGTTTATTTGAGATTTATCCCTATTGCAGCACACAAGGTGAATTCGATTCCGAAGGTTAGTTATGTTTGATTGGTGATTAGAAAAGTAAGAACTTTCCAAAGGTGTAGCTTAATGGTCAATGAATTGAGTTGACAATTCTCTGGTTCAAACCCCTACAGAGACAAAAAAAAAACCACTAGGTGCCTACCTTTCATCAGTCCTTACCCTTAGCCTTCGCGGATAGAGTTGGATAGAGTTACCTTAGTCTTGCGCACACGTTGACCTGGACACCTCGGTTATCAAAAAGGAACTTTTTTATAGAAACATTTACCATTATAATAACAAAGTAAATGGCTCTGAAGGATTTGATTGGTTAGAGTAAAAAGAAGGTTTTGCTGCTTAGTCTATAACTAGGCAGAGTAAGTTTTGGTAATTGGCTCCTTCGTTTGATCTTATGAGATGTTTAATAAAGAATGGAATCATTTTGGCGTTATGTTCTTTTCTTTTCTCAAATCCACTTGAATGAAAATAAAATTTAATCCCAGCCACAGCAGCTAAGATATTATTAGATTAACACAGCAATCAAATGTTGCTGTGAATATGTTACGGTGTGGCTGGTTCTAGTCTTATAATTATCAAAATTGAATGACCACTTGATTATGGTTGGACGGGATGTTATTGATCCATATCATTCTTTTAGTTTTGCTTGAATGTGATCATAAAACAGGGAGTTTTGACATTTGCTTAGTGTTATGTGTTGTTAATTTGTTTGGTCAAAGGTTCTTGCAAGGAAGCTTCAGTGAGCTTACCATTTTGAAATGCTTAGAAACTGGAGCGTATTCTACTTTACACACAAACTCAGTTTGTTGTCTAACCAATAGTTGTGATATTACCTAGGCTATCATACATAACTTTGGTGATCTCGTATAGCCTGATTTTCATTTACTTTAAGTAGATGATGAGTGTAATAGCTGTTTCAATATCTTATTCTCTTTCATATTTGTTGGCTTATGATCACAGATAATTAGGTTGGAACCTAGAGTTAGAGGGTCAGAAGTACCGGATGCTGAAGATCCAGATACTGCCAAGCAAGAACTCACTGCAGAAGAGAGGAATGACAAAATGAGAGAGTTAACTCAAATGTACTCATCAAAGAAGTCTATACGGCAGGTATGCTCCTCCCGTTTTCCGCTATCTTTGACCTACGTAAAGAACATTGAGGATTCTCTACTTTGCAGTTGCTGGAAATTCATAGATTTTACTTAAATGACAAAGATAATTCGTGGAAGAGAAAAAGTTGGTCTATCTATCTGTGTATATTATTATAAAACCAAGAACCCCAAATTTAAAAGTTAAATTACGTAAATACTATTCTAATAAACCTACTTAAGCTAATTACTCTTCTATCATAATTAACTAACCTTCCCTAATTTCTATTTGGTCCTCACTTTCATGTCTTTAAGCATCTCTAATATGCTGTTCTCGGCAGAGAGCTGTGCCGTTTACTTCTCCGTCTTTAGAAATCAATTCCCCCATGTCTATTTTCTCAATTTTCATCTTCTCCATTTTTTCTTGAGAAAGTAACAGTTTCATCTTCTCTATTGTCGACATCAGATTCGGTGTCTAGTACTCTTTCACCAAGCTGTTGTCTTCCCTTTTCACTTTTCTTACCCATTTTCTGTACTTGATCATCAGAACATCGCTGCTGCTCTACTTGTTCTGTTTATTTTTCCCGGTTAAATCCTTGTAGATATCTATCTCCATATTATCAACTTGTAAGTTTTTTTAATTGTTTACTTAGCAGAAACCATTGTTATCTGTTGAAACTTCTATTAATCACTGGTATGCATATTATCAATCGTGGTGTTCTTTTTTAGTTGGGGTATTTTTAAAAGCCTAATCAAACATTAGTTTTAGCAATTTAATGCGCATCGGTGAGAAATCTCACTCTCCAAGCACAAATGCTGATATCACCTAGAAGTTACTTCTTTACATATGTCTTCCTCATGAGGTGTATATATCCTGCACATTTCTCTTAAAGAATTCTGATGTGTGTTGCAAATTAATTTTTTATCAAAATTCTTCCGGAAGACTTAACAGTTCGAATTTAACAGTTCGTTCTATAGTCTCGCAGATGCTTCATGCTACATAATTGATAAAATAATCAGGGGATCATCAGTAGTGCCTTTTGTGTCCTAATAGTCTCCTATTGGCAAAACAGATATTTGTCTGATTGAACATTATAACCTGATTGTAAAAGAGCTCCGCATCAGTAGACCGATTTTTTCTGCACTTATATTGCCAAGCTCATCTATTTTAGTCCATGAAGATAACTAAACTAACAGAACTAATAAAACTTAACAGCAGATTCATTAATTATGAAAACAAAAACAAGTAAAAAAGTTTAGGTGTATTTGGACCTTGTGTTCAACTTCATGTGCTATTGGAACCTATCCATTGAGATGCTGATGAGAGTGAGACTTCCATTACTACAGATCTTGTGAGTGAGCTTAAAAGTAGCCTGATCTTGCTCCACTTCTTGTCAATGACAGTACGGCTCTCCATAAAGCAACGGCAGAGGTGGTTAATGGTGGCGTCGGGTTATTGTTGATAGAGTGGTGGTGAAATTATCCGCATAAAAATACCACTTAATGATATTAAGAGTGTGTTTGGTACGAAGGAACATGTTTTTTATCCTCCTCAAAAAAACTAAGTTGTGGATTTTATCCTTCTCCAAAAAGGAAAATGTGGATTTCCTATTTATTTTTTTTGTGTTCAGTAGGTAAAGCAATAACTATTATCCTATAAGCATTTGTATATGGTTTGGACAAATACATGAGAAACGGGGTAGGGAGGTAAGGGTGTGGGATTGTGGAGATGAGGGCTATGAGCAGTGGGGTTGAAGATATACAATCTATGTTTTATGTCACTAGTAGAAGTTGCTTTCTCTACTTTCATTAGGGAACTCATTTTTAAGGAGTTTGTTTTCCTAGGTAAATGTTGGACCAACTGAAACATGGGAAAATTGGAAAATATTTTCCTTCGTACCGAACAGGCCCTAAGATTTTGTTCAAGATCTTAATGATTAGGACCTATTTAGACCAAATAAGTGCAAATCTTAATGTAAACGAATGCATTAATGACCTAAGATCTGGAGACTCTTTGTTAAGTGTAAATAAATGAGGCCTAAGATATCATACTTTAAAGAATCTTTGAGAGTATCCGGAGCTGCTTTCAGAGTGTTTGAGCATTTGTTAGGAACTGATATCTACAAATTGTCTTTTCTTAAACATGCTTAAAAGTTGTAAGATTAAAGATTAGAGTTGGATTTGGATTTAAAATCAGTGAGGTTACTGTACAAACTCCAACAATTTCATTTTGACATCTCAACTTCATCTTGATTCTTGTGTGTCATGGAAACGTTTAATGGACTCTATTGATTTTTCTTGCAATGATTACCAAAGTTTATTATAAAGAATGCTGGGTGTAATTTTGTGACTTCATAGACAATGAATGAGGTTTTTAACTTAGAAAATACACCTTTTTCTTACTTTAAAAGTGGGAACTCCAAATTAAAAGGTTATATGTTTCCATAATCTATGTATATCTTTGTTTTATTCAATTGTGGGAAAAGCAAAGCTGGCTGTCATTGTTAGCTATATTTTCCGAATTAGTACATGACCATGTAGAAGAAAGAGCAGATAAATTTGTCATCAATCTTTTGTAATAGTAGTGTTGCCTTTTTTATATTGTTCTAGTCTTCTCTTTCCAGGCTAGGAAGCTTGATTCCCTGCGTCAACAAGAAGATACTGGAAATCAAGAGGAATTTGACAGGAATATAGCTGGAGCAATAAATAAAGAGGCTCTTGAAGTAACTGTTGCAACAGACAGTGCTCGGAATATACCACCACATGATCTAGATGCCACAATACCCCAGTTGGCATATCCACTAGACAGAATTATTTCCAAAGGAGAGTGGGATTTTCTTTTGGATATTTTTGAACTCACGGAAGCTGGAGCAGAAATGACACCTGATCTTTATCCAAGCTTTGTTCGCAACAGATCCTACAAATTGGAACATATACAGGTACTAAATGCTTAAAATTGCATAATATCATCTTTCCTGTATTATCAGTGAACACTTGAGTCGTACGTATTAGATCAACAGTTCCATATTTTCCTTATCTGGCGTGCCAAATTCACCTGCTTTGTTGTAGGATGAAGATGAGAAGAAAAGGCTGGCAGGCATACTTTCATTCATTACTCATCTTGTTAAGTTCAAGGATAAACATTCTATGGATGGTGTATCATCGGCAAAGCATCACAAGTTTCCTGGCATCTTGTCCCAGAAGTTCACTTCAATGTTTTCCATTTCAGATTCAAAAAGGCTGCCGGAAGAGAAAGTAACTCTTCTTATCAACTATGTGTTGGTTCTTACTCTCTTTGCTGATGACTTTCGTAGTGATCCATCTGATATAGCCAAAGATTTGAGAATTAATGCTGTAGCACTGCGGCCTTTCTATGAGTACTTAGGTTGCAAGCTTGTTCGTGAGAAAAACATTGTGTTGGCTACACTTCCTGTTCCGCTTGTATTTCCAGGTGTAAGGAGGAAGAGAAGAAGGTAGATTTGGTTTTAACAGGTAACCCTCAGACATTGAGAGCCCATGAACTACCAGCATTCTCTGTTGTCAGTTTTGTCATATTTTTTTGCCATCAATTTTGAATATCTATGAACTGAAAGTTGAAAACTTGAATTTTGATATGAAAA</genome_strand>
        <mrna_strand>GATTACAGTAGGGTTTATGCTTGTTGCTCCTCACCTTCCTCCTCCTTGTGGCTAAACACAAAGAGAAGAAGAAGACGCTAGAGGAACAAAACCCTAGCGAAGTAGAAGGCAAAATGAGCGAATCGATTAAGAAGAAGTCGAAGAAGAAGAAGAAGGAGACGCATACTGTGACAATGGAAACCATCGCTGAAAATCCTAATAATATTTCTCCGATGGTTGGTTATTTTCCATCAGGTTATGACCCTTTAAGGAACACAAATGACGGTGTGGAGGAATTGAGTACTAAGTTGTATAGGAATGTTAGAAGGAATAATCGGTTACAGGTTGTGGTGAGCCCTTATGGGTCGCAGGTCGATTTTGTTGGGACTAATTATTCTGGCGAGGCGACGTCTGCTCAGTTGTGTACTTATTCGCTTGGGATACTGGATAAGGAAACTCAAACTCTCAAGATTGTTCCTATTGCAGCTAACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTAGGTTGGAACCTAGAGTTAGAGGGTCAGAAGTACCGGATGCTGAAGATCCAGATACTGCCAAGCAAGAACTCACTGCAGAAGAGAGGAATGACAAAATGAGAGAGTTAACTCAAATGTACTCATCAAAGAAGTCTATACGGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGGAAGCTTGATTCCCTGCGTCAACAAGAAGATACTGGAAATCAAGAGGAATTTGACAGGAATATAGCTGGAGCAATAAATAAAGAGGCTCTTGAAGTAACTGTTGCAACAGACAGTGCTCGGAATATACCACCACATGATCTAGATGCCACAATACCCCAGTTGGCATATCCACTAGACAGAATTATTTCCAAAGGAGAGTGGGATTTTCTTTTGGATATTTTTGAACTCACGGAAGCTGGAGCAGAAATGACACCTGATCTTTATCCAAGCTTTGTTCGCAACAGATCCTACAAATTGGAACATATACAG..................................................................................................................................GATGAAGATGAGAAGAAAAGGCTGGCAGGCATACTTTCATTCATTACTCATCTTGTTAAGTTCAAGGATAAACATTCTATGGATGGTGTATCATCGGCAAAGCATCACAAGTTTCCTGGCATCTTGTCCCAGAAGTTCACTTCAATGTTTTCCATTTCAGATTCAAAAAGGCTGCCGGAAGAGAAAGTAACTCTTCTTATCAACTATGTGTTGGTTCTTACTCTCTTTGCTGATGACTTTCGTAGTGATCCATCTGATATAGCCAAAGATTTGAGAATTAATGCTGTAGCACTGCGGCCTTTCTATGAGTACTTAGGTTGCAAGCTTGTTCGTGAGAAAAACATTGTGTTGGCTACACTTCCTGTTCCGCTTGTATTTCCAGGTGTAAGGAGGAAGAGAAGAAGGTAGATTTGGTTTTAACAGGTAACCCTCAGACATTGAGAGCCCATGAACTACCAGCATTCTCTGTTGTCAGTTTTGTCATATTTTTTTGCCATCAATTTTGAATATCTATGAACTGAAAGTTGAAAACTCGAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314001" ref_strand="+" ref_description="SGN-U314001        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: CID11 | RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. | chr1:11874907-11877367 REVERSE | Aliases: F6N18.17, F6N18_17, CID11(evalue: 5e-112, score=401) genbank/nr: gi|15223304|ref|NP_174556.1| RNA-binding protein, putative [Arabidopsis thaliana] gi|25403416|pir||F86452 protein F6N18.17 [imported] - Arabidopsis thaliana gi|6714278|gb|AAF25974.1| F6N18.17 [Arabidopsis thaliana](evalue: 4e-110, score=401)">
      <seq>aatcggccgaattgatcttgtctctctctgcagaatcagtaaaaacaatacactacaacactccaaacagagaaacaaagaatccctttcttgttttgttcatagcttttttgatttttcattttgtagctgatgatgctctgttttttgtagtagcaaaaatggttgtcatttagagagtatcagaataccaaaaagggtaggaggagaagagaaaaaggagcgttctttgttataatcatggctgtggttgagaatgctgctattaacgttgttgtttcatcgaatcccagaagaattgtacagaaggatgttgttgttgatcatcagtcagtgaaaacgaaacagaacaatgatgtgcagaggtcgaaggtttccagcgatcagaattttgaaattatgtctgttaatcagcaggagcaggaagaaccccagaaggagaatggaattcagcagaaagaggaaagcgtgaatggtaatggagtattggatagtcatagtattcagcatcagaaaatgaacggtgttgatggtggtgatgaagggtttaagaaggagatgagggatttggaggaaatgctttccaaattgaatcccatggctgaagagtttgtgcctctttcaatggctaacaacaacatgctagtgccatatacacccggcgcagtgtattttggctttgatgctaacaattttctaatgcagactgaggccaatggaaattccaacagaaggaagaaaaatggctacggtcatggaaggagaaggatgaatacccgaacaggcatggcccaaagggaagatgttataaggaggacggtttatgtatccgacattgatcatcaggtgactgaagagcagctcgcatcactttttcttgattgcggacaggttgttgactgtcgtatatgtggtgacaccaattctgtacttcgattcgcctttattgagtttacagatgaagaaggtgcaaagagtgctctgagtcttgcaggaactatccttgggggttatcctgtgagagtgcttccttctaaaactgcgattgcaccggttaatccaacctttcttcctaggtctgaagatgaaagagagatgtgtgctagaactgtgtactgtacaaatattgataagaagattactcaagcagatgtcaagctgttttttgagtccttatgtggagaggttcatcgcttgaggttgcttggtgactatcatcattcgactcgtatcgcttttgttgagtttgtcatggcagagagcgcaattatagcactgaactgcagtggtgcattcctgggatcacttcccataagggtaagcccatcaaagactcctgtgcgtccgcgttttactcgttaagcagtgctctgatcaatcactgtggcattgcttttcagttggtcttttgcttataagcatatctaaatatatactacatatagtattagagtacttttctggcatttttcatttagttttcagtactaaatctctgctgagaatctctaattcgcggggtactagttatcaagcttatagagttgggctggtttatagtagatttattaatttaagttggtgtattatgtttctatagacactgcctgagtaccaaaactagatggatgttcttaatttacagttatatttatcagtaactttgttgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14345" stop="21312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14645" g_stop="14816" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="186" r_length="172" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14817" i_stop="14930" i_length="114">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14931" g_stop="15479" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="735" r_length="549" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15480" i_stop="16090" i_length="611">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.099" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16091" g_stop="16201" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="846" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16202" i_stop="16293" i_length="92">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16294" g_stop="16338" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="891" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16339" i_stop="16451" i_length="113">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.098" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16452" g_stop="16524" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="892" r_stop="964" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16525" i_stop="16618" i_length="94">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16619" g_stop="16731" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1077" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16732" i_stop="16843" i_length="112">
            <donor d_prob="0.760" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16844" g_stop="16903" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1078" r_stop="1137" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="16904" i_stop="16984" i_length="81">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="16985" g_stop="17032" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1138" r_stop="1185" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17033" i_stop="17119" i_length="87">
            <donor d_prob="0.931" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="17120" g_stop="17188" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1186" r_stop="1254" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="17189" i_stop="20517" i_length="3329">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="20518" g_stop="20579" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1255" r_stop="1316" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="20580" i_stop="20656" i_length="77">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="20657" g_stop="21019" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1317" r_stop="1679" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U314001" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1665</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14645" e_stop="14816"/>
          <exon e_start="14931" e_stop="15479"/>
          <exon e_start="16091" e_stop="16201"/>
          <exon e_start="16294" e_stop="16338"/>
          <exon e_start="16452" e_stop="16524"/>
          <exon e_start="16619" e_stop="16731"/>
          <exon e_start="16844" e_stop="16903"/>
          <exon e_start="16985" e_stop="17032"/>
          <exon e_start="17120" e_stop="17188"/>
          <exon e_start="20518" e_stop="20579"/>
          <exon e_start="20657" e_stop="21019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTTGTCTCTCTCTGCAGAATCAGTAAAAACAATACACTACAACACTCCAAACAGAGAAACAAAGAATCCCTTTCTTGTTTTGTTCATAGCTTTTTTGATTTTTCATTTTGTAGCTGATGATGCTCTGTTTTTTGTAGTAGCAAAAATGGTTGTCATTTAGAGAGTATCAGGTATGATTTCTGTATTTATTTCTCGATTTAGTAATAAATTCAAAAACCCAATTTGATCTTTTTGAGAAAAAAAAAGTGATCTTTTGTTTATTTTTGTTGTTGGGTTTTTGATAGAATACCAAAAAGGGTAGGAGGAGAAGAGAAAAAGGAGCGTTCTTTGTTATAATCATGGCTGTGGTTGAGAATGCTGCTATTAACGTTGTTGTTTCATCGAATCCCAGAAGAATTGTACAGAAGGATGTTGTTGTTGATCATCAGTCAGTGAAAACGAAACAGAACAATGATGTGCAGAGGTCGAAGGTTTCCAGCGATCAGAATTTTGAAATTATGTCTGTTAATCAGCAGGAGCAGGAAGAACCCCAGAAGGAGAATGGAATTCAGCAGAAAGAGGAAAGCGTGAATGGTAATGGAGTATTGGATAGTCATAGTATTCAGCATCAGAAAATGAACGGTGTTGATGGTGGTGATGAAGGGTTTAAGAAGGAGATGAGGGATTTGGAGGAAATGCTTTCCAAATTGAATCCCATGGCTGAAGAGTTTGTGCCTCTTTCAATGGCTAACAACAACATGCTAGTGCCATATACACCCGGCGCAGTGTATTTTGGCTTTGATGCTAACAATTTTCTAATGCAGACTGAGGCCAATGGAAATTCCAACAGAAGGGTATGAACTTATTTTTATTGATGAAATAGTGATTTATTTTTGATGAATTTTCTCCGTGAATCGAGGTTTGTTAGTAGTGTATTTCTCGAATGTAGAATGCTTTCAACCTACTTGCAATGTATTTGATCACTAGGAACATTGGGTTGCAGCTTTGACAAAGACAGTATTTGATGTCTTGATATCTTAGGAGTTTATGTAATTTCAAGATGAAGGGTGTCAGTTAGTGATTATTTTCCTTTCTAAGTTATCATGTTTTTATTTGGTCTAAAGCAAAAGTTGATAATTTATATTTGTTCGTTTGTTTGCAATGGAATACGTATATGTTAGGTTCTCCACTTTTAACATTGTTTACTTTCCAGAATCATTTAGTATGGTAGATGTGAGATGATCACTCAAGAGGACATTTCATATAGTCCAATTGTTATTTTGCATAAAAGTAATAAGAGGGCTTTAGTCATTTTAGTGTTCAAGTGAAGGGTGTTGAGTTTATTTTATATCTTTCTTTACCATTTATTTTGGAAAAAGACAAAGCTTCGTTGTTTTTTTCTTTTGGAAATATATTTACGTTCGTGAGTTTGAGCTGATTGGTGGAGTTTACATTGTGCATGTAGAAGAAAAATGGCTACGGTCATGGAAGGAGAAGGATGAATACCCGAACAGGCATGGCCCAAAGGGAAGATGTTATAAGGAGGACGGTTTATGTATCCGACATTGATCATCAGGTAAAAAAGAGAGTTGGGTGTTATTATTAATTGGGTTACTGCACCTTCATCTTTTTTATTTTAATAATTCTGTTTCTTCTTCTTTTGTGTAGGTGACTGAAGAGCAGCTCGCATCACTTTTTCTTGATTGCGGACAGGTGGATATCTATCCATTATGTCAAGCATCAGTACTTTTAGTTCTCACTGTTTTGCCTTTCAATTATGTTGAGGAAATGTCTTGTTTCCATTCTGACTAACATTGACGTGTAAGGTTGTTGACTGTCGTATATGTGGTGACACCAATTCTGTACTTCGATTCGCCTTTATTGAGTTTACAGATGAAGGTAGGTTGACACATGATTATTTGTTTATATATTCTGGCTAGATTGTTAGGGTGCTTGTTCTCTAACTCCACATTTTCCCCAATATGTTATGCAGAAGGTGCAAAGAGTGCTCTGAGTCTTGCAGGAACTATCCTTGGGGGTTATCCTGTGAGAGTGCTTCCTTCTAAAACTGCGATTGCACCGGTTAATCCAACCTTTCTTCCTAGGGTGAGAAATTTTGGCTACATGTAGTTTACCCTTTGTAACAATGCCCTAGGAGTGGCAAATGCATACTTAGTGCTGCTAATACTAAAATTTTCACCTTTTGCGCTGATGTTAGTCTGAAGATGAAAGAGAGATGTGTGCTAGAACTGTGTACTGTACAAATATTGATAAGAAGGTATTTTGGGTTTACAATTTCACTTTTTTGATGGACTTCAATGAAGAAAATATTTACTACTTGTATGTTTGTATGAAGCAGATTACTCAAGCAGATGTCAAGCTGTTTTTTGAGTCCTTATGTGGAGAGGTTTGTAGCTGCTCATGTAACAAGTCTGACGTGCTGTTCCTTCTTAAAATCCTAACTCTTTGTTATGGATTTTCTTCTCTAACATAGGTTCATCGCTTGAGGTTGCTTGGTGACTATCATCATTCGACTCGTATCGCTTTTGTTGAGTTTGTCATGGTAACTTTCATGAGCTTCTGACTTTTCATTGCTGTTTATACTAACTTGAGTTGTGGACCTCTTCTTCTTACCATCATCAAAGCTACTGTCACTTCCAATAGTTGCTATCTATGTCGGATCCTGTTATTTGCAAATGCTTTTCTTTAGCATTTTATCTGCTCAAAGTCTGTTATCTCTTTTACTTTGCTCTTGTGGTTCCGAGTGGGTAAGTAGTTGTATTAATGTGGGATAGCTCCTGTAACAAGATGTAGAGAACTTACACAGTAACATGGTTATCTACAATATATACTAAAAAGTAGAGAATCTACACAATAATATGGTTTTTGTACATCTGCACAGACGACCACAAGAACTTCATATGTGCACCAAAAACTAAATAAGAGGCTATTCCTCAAATTTATGAAATAATTTCTAACCCCTCTTAAGCTTCCTATTTCGTTCTAATCCCACATGATGACTAGCGGGGCAACATCCCGTGCCCTGCATCTTCTCTTCCTTCTTCTAGCAGCCTACTATGAAGTATGAACACATCTTTTATTGAGCCCGACACTTTTTGACCAACGACTTCTGTGAAAACGCACCATCATTTCTTGCTTCCACCTTCACAAGTCCTGACCAGTGAGTGCTATCCTGAGAATAGAACATTCCCATCAAGCTTTGGATTTCACTACTGCCCAATCTTTTAGATTTCTTTTGATCACTAGTCTCATGAACCCCTCTTGTACCACCTGGATCTGTTGCCATCATCTCTTTTTTGCATGAATTTGTGAATGAGCTAGGGATGGTCTTCATCAACACGCTCTCTCCATGACTACTGTTGATCCCACAAGACTCTTCTTTCATTCCCATCTAAATAGGTAACAAAGTTGCTAAGTTCTTCTTAACCCTTTATGATATTGCTGAAAAGACTTATCTATAAGGTAATTTTACATTCTAGCCTCCATTTTCTTTCGACAACTCTGTATATCTTTCTATCACCTCCCTTCGTAATGTCTAATCTTCAATCCTAAATCTTTATAGCCACTTCCCAGGTGGTTCCTTGTTAAAAATTCTAAAATCTTTCATCCAAGCCCTCTAAAAGGTTTCATTTGCCGTGCCCCAGAACAAGTTTTTCCTTTACAATCTTTTTGTCACATTAATGGGAACTCCGTGCCTTATTTGAATGTTGTGTGATTCTCTTGCGGTCAAAAAAGTGTAGAAACACCAACTCTGGTCCCTATTTGAATTTATTGCATTAACTCAAAATGTCGCTAGCTTGGGTCACCCCTATGAATTCTAAAACATAAAACTGAGTTTTGGCTTAAAATTTTCTCCCTTTGCTCCTGCTATCCCAGTATAAGCATATACCGGTGTCGTTCTTTGCCACCACTAACTAACTCTAATTTTGTTAGCCATATGAAATTTACAGCGTTCTGTGAGCAAGTTTCTCTATAGTGAAACCTTTCTTTGGCTTCACAAGGTCCTTTATCTGCAGGTTAATTGATAATGTAGGTCTATTGATTTGATAGCCAGTTTCGGTTTAGTTTTCCTACTTTAGGTACTCAATAGTGCAGGTAGAGTTTCTCTTGGTGGGAGTATTCCTTTAATTCCTTAACTAGCAGATGAAATGAGAGAGGTGCGCAGTTTGATAGGATTTTGTCTACCTTCCCAAGAGAATTTACTCTTAGGATTAATTTTACAGTTACTTTACTTATCACAAAAAATTATCTTTTTTTCATTACTTCATTGACCATTTCCACTGTAATAAAAGTGAGATATGAATGAGATTGTATGCTTGACCAAAACTAACGTGAGCTGAGAAGAATTCACCCTCTATTGACGAGTTAAACTGGCTCATTTTCACCTTTTGTTTCATTGACATGAAGGATTATGGTTGATTCAGGTTGACTTGTGAATCTTATACATACTTTTTGGATTGGTTTTCATTGTTGAACTTATAATAGAAAAAACGAACTGGAAAGCTGCATCCTTTGAAAATAAAGAAATGAAGGGTTTTGGTACTAAAAGTAATTTGAAGGAGCTTGTTTTACATAGAAACGAAATTAGGAAATTAAAAGACCTTGCTGAAGGGGTTCAAGACAAGCAGAAACAAAATTCGCTTCTGTGTCTATTTTTTGATCAGTTGAACAGGCATCTGACTATATTTAGTTGCTATCTACACATGTTAAGTCTTGATGTAGCTCATCTGCAGCAGCTAGAGATATCAGAAGCCTTAGAATTTAGAGAAGTAGAAACAAGGAAAAATTGCAATCATGATGTTTTTGATACCTGACCAACTCAAGTGGACATGTTGGTGAGGAATCAGATTTATAGAAAGTGGCAACAGAATCTCCCAGAGCAGTCCCCAGAACTTTGCTCTTGCACTACATTCAGATTATCTGGCAAATTGTTGTTTACTTGGCTTCTGTCTGTGAACAACTTTTAAGCTCTTGCCTTTAGTTCGGACTTCTCAATTTACATAGATGCAGACCTGTTATTTAGATTAAAAGGTGTAAGAGCCATGCATTTTTGGTACTGTTTGTCCAAAAGAATCAATAATATTAATGTCCAACCAAACCATCGTAGACTTTGATAAGTAGGGAGTACTTTAATACCAGCAATTTGATAAGTAGGGAGTAATTTCATTTAACCTGCAGTTTTATTGATTTTGTACTCTTTCAGTTCATGATTTGCTCTCAACTAGTATGTTTCTTCCTTTTCCACTGTATCCTATCCTTCTTACGGGTTAAGAATTGGTAGGGATATCTTAAAATACTCTAAAAATTTCTCCGTTCATTGGATTCTGTGTCTGCATTTGAGGTTTTCATCTGATGAATTCCAGAAGCTCTTTTCTGTTATTTGTCAGAAATGTTTGTTTCAAAAGTGAGATCATTAACTGTAGAGTTCATGCTGAATTTCTCCAGTGACACACTTTCAGTGTACGTTTTGTCTTTAATAGTAGGAGATGCGTCTTATATAACGGGACAACACTTTTTAGTTTGGAAATGACATACTTGTGTCTGTTCTTCTTTTCTTCTATTTTTCTTCGATTCTGCAGCTTATTTTCATTGCAGACAACACCTACGTGATGCCTTTGTCAGAATATCATTTGATATTAGTGTGCGACTGTGCATTGTGTGGTATTGCTGTGATCTCAGCACTCCTCAGTTCCCAAATTTTTTCTTTTGTCGTTTGTAGAATATTCATTAGATTACTGAATAGAAAATTTTGAACTATTCCATTTTACTGATTCTTTATCCGTGTCATCATATCTCCTTGATGGATTTTGGTACAACAATCCCTTACCGCACTTTATGTATGGTTTCATGTTAAATTTTCTTCTGTTTCAGGCAGAGAGCGCAATTATAGCACTGAACTGCAGTGGTGCATTCCTGGGATCACTTCCCATAAGGTTACTTTCTGATTCCATAGAACTTGCTGTCTCATATATGCTGAGAGTTAACCTTTATAATATTATGATCTATGCAGGGTAAGCCCATCAAAGACTCCTGTGCGTCCGCGTTTTACTCGTTAAGCAGTGCTCTGATCAATCACTGTGGCATTGCTTTTCAGTTGGTCTTTTGCTTATAAGCATATCTAAATATATACTACATATAGTATTAGAGTACTTTTCTGGCATTTTTCATTTAGTTTTCAGTACTAAATCTCTGCTGAGAATCTCTAATTCGCGGGGTACTAGTTATCAAGCTTATAGAGTTGGGCTGGTTTATAGTAGATTTATTAATTTAAGTTGGTGTATTATGTTTCTATAGACACTGCCTGAGTACCAAAACTAGATGGATGTTCTTAATTTACAGTTATATTTATCAGTAACTTTGTTGAAATTCGATG</genome_strand>
        <mrna_strand>ATCTTGTCTCTCTCTGCAGAATCAGTAAAAACAATACACTACAACACTCCAAACAGAGAAACAAAGAATCCCTTTCTTGTTTTGTTCATAGCTTTTTTGATTTTTCATTTTGTAGCTGATGATGCTCTGTTTTTTGTAGTAGCAAAAATGGTTGTCATTTAGAGAGTATCAG..................................................................................................................AATACCAAAAAGGGTAGGAGGAGAAGAGAAAAAGGAGCGTTCTTTGTTATAATCATGGCTGTGGTTGAGAATGCTGCTATTAACGTTGTTGTTTCATCGAATCCCAGAAGAATTGTACAGAAGGATGTTGTTGTTGATCATCAGTCAGTGAAAACGAAACAGAACAATGATGTGCAGAGGTCGAAGGTTTCCAGCGATCAGAATTTTGAAATTATGTCTGTTAATCAGCAGGAGCAGGAAGAACCCCAGAAGGAGAATGGAATTCAGCAGAAAGAGGAAAGCGTGAATGGTAATGGAGTATTGGATAGTCATAGTATTCAGCATCAGAAAATGAACGGTGTTGATGGTGGTGATGAAGGGTTTAAGAAGGAGATGAGGGATTTGGAGGAAATGCTTTCCAAATTGAATCCCATGGCTGAAGAGTTTGTGCCTCTTTCAATGGCTAACAACAACATGCTAGTGCCATATACACCCGGCGCAGTGTATTTTGGCTTTGATGCTAACAATTTTCTAATGCAGACTGAGGCCAATGGAAATTCCAACAGAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAAATGGCTACGGTCATGGAAGGAGAAGGATGAATACCCGAACAGGCATGGCCCAAAGGGAAGATGTTATAAGGAGGACGGTTTATGTATCCGACATTGATCATCAG............................................................................................GTGACTGAAGAGCAGCTCGCATCACTTTTTCTTGATTGCGGACAG.................................................................................................................GTTGTTGACTGTCGTATATGTGGTGACACCAATTCTGTACTTCGATTCGCCTTTATTGAGTTTACAGATGAAG..............................................................................................AAGGTGCAAAGAGTGCTCTGAGTCTTGCAGGAACTATCCTTGGGGGTTATCCTGTGAGAGTGCTTCCTTCTAAAACTGCGATTGCACCGGTTAATCCAACCTTTCTTCCTAGG................................................................................................................TCTGAAGATGAAAGAGAGATGTGTGCTAGAACTGTGTACTGTACAAATATTGATAAGAAG.................................................................................ATTACTCAAGCAGATGTCAAGCTGTTTTTTGAGTCCTTATGTGGAGAG.......................................................................................GTTCATCGCTTGAGGTTGCTTGGTGACTATCATCATTCGACTCGTATCGCTTTTGTTGAGTTTGTCATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGAGCGCAATTATAGCACTGAACTGCAGTGGTGCATTCCTGGGATCACTTCCCATAAG.............................................................................GGTAAGCCCATCAAAGACTCCTGTGCGTCCGCGTTTTACTCGTTAAGCAGTGCTCTGATCAATCACTGTGGCATTGCTTTTCAGTTGGTCTTTTGCTTATAAGCATATCTAAATATATACTACATATAGTATTAGAGTACTTTTCTGGCATTTTTCATTTAGTTTTCAGTACTAAATCTCTGCTGAGAATCTCTAATTCGCGGGGTACTAGTTATCAAGCTTATAGAGTTGGGCTGGTTTATAGTAGATTTATTAATTTAAGTTGGTGTATTATGTTTCTATAGACACTGCCTGAGTACCAAAACTAGATGGATGTTCTTAATTTACAGTTATATTTATCAGTAACTTTGTTGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333132" ref_strand="+" ref_description="SGN-U333132        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | RNA recognition motif (RRM)-containing protein, contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) | chr2:18033474-18038066 REVERSE | Aliases: T1O24.15(evalue: 7e-17, score=83.6) genbank/nr: hypothetical(evalue: 2e-20, score=101)">
      <seq>tcgcctcttcatctccttctctccttttaagataagaagaaaaaaaaacctaaacgccattcacaaacctcaatttgctgctgcttcttctccttctccgttcaatcaataatctatcttcttctcgatctaattactactttttctaggtatcgttttcgtgtttgattagttttctagggtttcaattatggcgccgccgggagaaataccgtcgaacaatctatgggttggtaatatagcaccagatgttactgatgcagatctaacgtctttgttccagaaatacggacagcttgatagtgtaaccgcttattcttctcgcggatttggttttctctatttcaaaaacatcaacgattctaaggaggctaaagacgcgcttcagggatccttcttccatggaaatcctcttaggattgaattcgcaaagccggtttgtgtttttgattttctgtttattctgattctcattcggatggatttttgttgtttattcatcatttacttgttaattttatttactaaaattttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29905" stop="31033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30205" g_stop="30733" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="552"/>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U333132" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30205" e_stop="30733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCTCTTCATCTCCTTCCCCTCTTTTAAGATAAG-A-AAAAAAAAACCTAAACGCCATTCACAAACCTCAA--T--T--TGCTTCTTCTTCTTCTCCGTTCAATCAATAATCTATCTTCTTCTCGATCTAATTACTACTTTTTCTAGGTATCGTTTTCGTGTTTGATTAGTTTTCTAGGGTTTCAGTAATGGCGCCGCCTGGAGAAATACCGTCGAACAATCTATGGGTTGGTAATATAGCACCAGATGTTACTGATGCAGATCTAACGTCTTTGTTCCAGAAATACGGACAGCTTGATAGTGTAACCGCTTATTCTTCTCGCGGATTTGGTTTTCTCTATTTCAAAAACATCAACGATTCTAAGGAGGCTAAAGACGCGCTTCAGGGATCCCTCTTCCATGGAAATCCTCTTAGGATTGAATTCGCAAAGCCGGTTTGTGTTTTTGATTTTCTGTCTATTCTGATTCTCATTCGGATGGATTTTTGTTGTTTATTCATCAATTACTTGTTAATTTTTTTTACTAAAATTTTCAA</genome_strand>
        <mrna_strand>TCGCCTCTTCATCTCCTTCTCTCCTTTTAAGATAAGAAGAAAAAAAAACCTAAACGCCATTCACAAACCTCAATTTGCTGCTGCTTCTTCTCCTTCTCCGTTCAATCAATAATCTATCTTCTTCTCGATCTAATTACTACTTTTTCTAGGTATCGTTTTCGTGTTTGATTAGTTTTCTAGGGTTTCAATTATGGCGCCGCCGGGAGAAATACCGTCGAACAATCTATGGGTTGGTAATATAGCACCAGATGTTACTGATGCAGATCTAACGTCTTTGTTCCAGAAATACGGACAGCTTGATAGTGTAACCGCTTATTCTTCTCGCGGATTTGGTTTTCTCTATTTCAAAAACATCAACGATTCTAAGGAGGCTAAAGACGCGCTTCAGGGATCCTTCTTCCATGGAAATCCTCTTAGGATTGAATTCGCAAAGCCGGTTTGTGTTTTTGATTTTCTGTTTATTCTGATTCTCATTCGGATGGATTTTTGTTGTTTATTCATCATTTACTTGTTAATTTTATTTACTAAAATTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320464" ref_strand="+" ref_description="SGN-U320464        Tomato 200607 #1 [9 ESTs aligned]">
      <seq>ttttgtttttttctaaaaaaaaatgactggtacaatccattcaaagagaagagagaggatcaacgctctagctagtaattcttttttggaagtgtagacattcagtatttgtaggcctggagatgaaagtgatctagatgcttaatgatggttgggtgttaagtttggcatcaaatagaaatatttcaataagtgaaaagctttaatggttgcagaaagattgtgacaagttggaagtttgcttgtgaaattagttattactggatatttttactgtagtcttgttagaaattttccaggaggcactttctttgtccatatgactatatttaataggagaaatcaacgggataagtcaaaatgattcatggacatttgaacaagactccatattcaattggtttttcagtggtgaaaattgacgagggtcatagatgtctagcatctattgtttgcatcagacgttttaggttgacaaactttagtggtgggatagtagttctattctgaatatattgcctttaagccttcatgctctggaattctgtagatcagtagggatcctctctttaccagtgacacatttctttttgtgaggcggtctctctttttcaatctgaccatttatatctactgattgttgaaccccaaaaaaaaaaaaggaaattatctattgaatgtgttcgccatgtccagttgtttagcatttttagagcctcgcctttatgcactttaagctaataacataatattatgtgttaaatactgccaccgtcttattggtttagtgggagcattcttcgttttgcctgcatgattaccccaacttctcttatttgttaactttttcaccatatttttgttgctacttttattttggtctcgtgtttttcatatgcattagtttaggatatggtggtttatactgatatggtattgtagctttctttggatgagcttcagtaatttgactatagttgatttatattttctgttagtagaattcaaataacaaatgcctaatattaataagttgagttgtaaaatggcgttgtgaaaaaactataattaataagaatcatggaacatatattcctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37456" stop="39152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37756" g_stop="38852" g_length="1097"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1097" r_length="1097" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1098" polyA_stop="1119"/>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U320464" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>1097</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37756" e_stop="38852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTTTTTTTCTAAAAAAAAATGACTGGTACAATCCATTCAAAGAGAAGAGAGAGGATCAACGCTCTAGCTAGTAATTCTTTTTTGGAAGTGTAGACATTCAGTATTTGTAGGCCTGGAGATGAAAGTGATCTAGATGCTTAATGATGGTTGGGTGTTAAGTTTGGCATCAAATAGAAATATTTCAATAAGTGAAAAGCTTTAATGGTTGCAGAAAGATTGTGACAAGTTGGAAGTTTGCTTGTGAAATTAGTTATTACTGGATATTTTTACTGTAGTCTTGTTAGAAATTTTCCAGGAGGCACTTTCTTTGTCCATATGACTATATTTAATAGGAGAAATCAACGGGATAAGTCAAAATGATTCATGGACATTTGAACAAGACTCCATATTCAATTGGTTTTTCAGTGGTGAAAATTGACGAGGGTCATAGATGTCTAGCATCTATTGTTTGCATCAGACGTTTTAGGTTGACAAACTTTAGTGGTGGGATAGTAGTTCTATTCTGAATATATTGCCTTTAAGCCTTCATGCTCTGGAATTCTGTAGATCAGTAGGGATCCTCTCTTTACCAGTGACACATTTCTTTTTGTGAGGCGGTCTCTCTTTTTCAATCTGACCATTTATATCTACTGATTGTTGAACCCAAAAAAAAAAAAAAGGAAATTATCTATTGAATGTGTTCGCCATGTCCAGTTGTTTAGCATTTTTAGAGCCTCGCCTTTATGCACTCTAAGCTAATAACATAATATTATGTGTTAATTACTGCCACCGTCTTATTGGTTTAGTGGGAGCATTCTTCGTTTTGCCTGCATGATTACCCCAACTTCTCTTATTTGTTAACTTTTTCACCATATTTTTGTTGCTACTTTTATTTTGGTCTCGTGTTTTTCATATGCATTAGTTTAGGATATGGTGGTTTATACTGATATGGTATTGTAGCTTTCTTTGGATGAGCTTCAGTATTTTGACTATAGTTGATCTATATTTTCTGTTAGTAGAATTCAAATAACAAATGCTTAATATTACTAAGTTGAGTTGTAAATTGGCGTTGTG-GAAAACTATAATTCTACTGAATCTTGGAACATATATTCCT</genome_strand>
        <mrna_strand>TTTTGTTTTTTTCTAAAAAAAAATGACTGGTACAATCCATTCAAAGAGAAGAGAGAGGATCAACGCTCTAGCTAGTAATTCTTTTTTGGAAGTGTAGACATTCAGTATTTGTAGGCCTGGAGATGAAAGTGATCTAGATGCTTAATGATGGTTGGGTGTTAAGTTTGGCATCAAATAGAAATATTTCAATAAGTGAAAAGCTTTAATGGTTGCAGAAAGATTGTGACAAGTTGGAAGTTTGCTTGTGAAATTAGTTATTACTGGATATTTTTACTGTAGTCTTGTTAGAAATTTTCCAGGAGGCACTTTCTTTGTCCATATGACTATATTTAATAGGAGAAATCAACGGGATAAGTCAAAATGATTCATGGACATTTGAACAAGACTCCATATTCAATTGGTTTTTCAGTGGTGAAAATTGACGAGGGTCATAGATGTCTAGCATCTATTGTTTGCATCAGACGTTTTAGGTTGACAAACTTTAGTGGTGGGATAGTAGTTCTATTCTGAATATATTGCCTTTAAGCCTTCATGCTCTGGAATTCTGTAGATCAGTAGGGATCCTCTCTTTACCAGTGACACATTTCTTTTTGTGAGGCGGTCTCTCTTTTTCAATCTGACCATTTATATCTACTGATTGTTGAACCC-CAAAAAAAAAAAAGGAAATTATCTATTGAATGTGTTCGCCATGTCCAGTTGTTTAGCATTTTTAGAGCCTCGCCTTTATGCACTTTAAGCTAATAACATAATATTATGTGTTAAATACTGCCACCGTCTTATTGGTTTAGTGGGAGCATTCTTCGTTTTGCCTGCATGATTACCCCAACTTCTCTTATTTGTTAACTTTTTCACCATATTTTTGTTGCTACTTTTATTTTGGTCTCGTGTTTTTCATATGCATTAGTTTAGGATATGGTGGTTTATACTGATATGGTATTGTAGCTTTCTTTGGATGAGCTTCAGTAATTTGACTATAGTTGATTTATATTTTCTGTTAGTAGAATTCAAATAACAAATGCCTAATATTAATAAGTTGAGTTGTAAAATGGCGTTGTGAAAAAACTATAATTAATAAGAATCATGGAACATATATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320465" ref_strand="+" ref_description="SGN-U320465        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>ttttcaccatattcaagtggttacttttattttggtctcgtgtttttcatatgcattagtttaggatatggtggtttatactgatatggtattgtagctttctttggatgagcttcagtattttgactatagttgatctatattttctgttagtagaattcaaataacaaatgcttaatattactaagttgagttgtaaattggcgttgtggaaaactataattctactgaatcttggaacatatattcctgcagtatttaatatgcttgctcttcatcaatatatattttaggaatataccaagatatatgaaatacaaactcattacaaatatccaaaactctacgcaagaacactagccaaatatcaatattcgtgtttccagtaaaataggaatctctacatctagacaacacttctctgtaacgactacagctatttggctgtgcatttagtttcaacaaacctgcacattgacttaaaatgctatcttccaatcgcttaaatgttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38318" stop="39415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38602" g_stop="39115" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="514" r_length="514" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U320465" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38602" e_stop="39115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCACCATATTTTTGTTGCTACTTTTATTTTGGTCTCGTGTTTTTCATATGCATTAGTTTAGGATATGGTGGTTTATACTGATATGGTATTGTAGCTTTCTTTGGATGAGCTTCAGTATTTTGACTATAGTTGATCTATATTTTCTGTTAGTAGAATTCAAATAACAAATGCTTAATATTACTAAGTTGAGTTGTAAATTGGCGTTGTGGAAAACTATAATTCTACTGAATCTTGGAACATATATTCCTGCAGTATTTAATATGCTTGCTCTTCATCAATATATATTTTAGGAATATACCAAGATATATGAAATACAAACTCATTACAAATATCCAAAACTCTACGCAAGAACACTAGCCAAATATCAATATTCGTGTTTCCAGTAAAATAGGAATCTCTACATCTAGACAACACTTCTCTGTAACGACTACAGCTATTTGGCTGTGCATTTAGTTTCAACAAACCTGCACATTGACTTAAAATGCTATCTTCCAATCGCTTAAATGTTCTC</genome_strand>
        <mrna_strand>TTTTCACCATATTCAAGTGGTTACTTTTATTTTGGTCTCGTGTTTTTCATATGCATTAGTTTAGGATATGGTGGTTTATACTGATATGGTATTGTAGCTTTCTTTGGATGAGCTTCAGTATTTTGACTATAGTTGATCTATATTTTCTGTTAGTAGAATTCAAATAACAAATGCTTAATATTACTAAGTTGAGTTGTAAATTGGCGTTGTGGAAAACTATAATTCTACTGAATCTTGGAACATATATTCCTGCAGTATTTAATATGCTTGCTCTTCATCAATATATATTTTAGGAATATACCAAGATATATGAAATACAAACTCATTACAAATATCCAAAACTCTACGCAAGAACACTAGCCAAATATCAATATTCGTGTTTCCAGTAAAATAGGAATCTCTACATCTAGACAACACTTCTCTGTAACGACTACAGCTATTTGGCTGTGCATTTAGTTTCAACAAACCTGCACATTGACTTAAAATGCTATCTTCCAATCGCTTAAATGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339540" ref_strand="+" ref_description="SGN-U339540        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-58, score=228)">
      <seq>agattcgatggagaaagtgaagtctattcaagaaaagcttctagcggcgcaaagtagacaaaaagaatatgcagatcgaaaggttagagacttagagttcatggagggcgaacaagtcttgttgaaagtctcgccaatgaaaggggtgatgcggtttcgtaaaagaggtaagttaagtccaaggtatattggaccatttgaggtactaaagcgagtaggggaggtggcttatgaattagccttacctccagggctgtccggagtacatccggtatttcatgtatccatgttgaaaagataccatggagatggaaactacatcatccgttgggattcagtttcgcttggtgagaattggacttatgaggaggaaccagttgctattttagatagagaggttcgcaagttgaggtcgagagaaattgcatccatcaaagttcaatggaagaatcgaccggttgaagaagctacttgggagaaggaggcagatatgcaagaaaaatacccacatctgtttacagattcaggtactccttttcgccattgtttttcttcatttgatcgttcggggacgaacgatgggtaaattggtatctattgtaacgacctgtttagtcgttttgagcagcagattttaattctggaaaaactggccaagaccacgggcactgcgacggaccgtcacaggcacgacggcccgtcgaaggtgcatcgtttcagcatacttagaatttctgaatttggatatgaaaatcgactctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45678" stop="44395"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45379" g_stop="44684" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U339540" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45379" e_stop="44684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTCATTAGAGAAAGTGAAATCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGGCAAAAAGAATATGCAGACCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAGGTTTCGCTAATGAAAGGGGTGATGCGGTTTGGTAAGCGAGGTAAACTTAGCCCAAGGTATATTGGTCCATTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGAGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCACAAGTTGAGATCAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGG-AAAACTGGCAGAGACGACGAACCGCACGACGGACCGTCATGGGCACGACGGA</genome_strand>
        <mrna_strand>AGATTCGATGGAGAAAGTGAAGTCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGACAAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGCGAACAAGTCTTGTTGAAAGTCTCGCCAATGAAAGGGGTGATGCGGTTTCGTAAAAGAGGTAAGTTAAGTCCAAGGTATATTGGACCATTTGAGGTACTAAAGCGAGTAGGGGAGGTGGCTTATGAATTAGCCTTACCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTATCCATGTTGAAAAGATACCATGGAGATGGAAACTACATCATCCGTTGGGATTCAGTTTCGCTTGGTGAGAATTGGACTTATGAGGAGGAACCAGTTGCTATTTTAGATAGAGAGGTTCGCAAGTTGAGGTCGAGAGAAATTGCATCCATCAAAGTTCAATGGAAGAATCGACCGGTTGAAGAAGCTACTTGGGAGAAGGAGGCAGATATGCAAGAAAAATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCATTGTTTTTCTTCATTTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTAATTCTGGAAAAACTGGCCAAGACCACGGGCACTGCGACGGACCGTCACAGGCACGACGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326740" ref_strand="+" ref_description="SGN-U326740        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: ATMG00860.1 | Symbol: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD | Aliases: ORF158 (evalue: 2e-15, score=79.3) genbank/nr: RNA-directed(evalue: 2e-101, score=370)">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46621" stop="47934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46921" g_stop="47634" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U326740" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46921" e_stop="47634"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGATACTGCATCTAGCCAAAACTCATACTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATTATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAATAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAATTCGGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTA-TATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335935" ref_strand="+" ref_description="SGN-U335935        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 2e-78, score=295)">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47142" stop="48388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47442" g_stop="48061" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U335935" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47442" e_stop="48061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAATTCGGCGGGAGCCATTCTATAAGTGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCAATACAAAAGTTAATATCCTTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGGACTACCGAAACTGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCATAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAA</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317065" ref_strand="+" ref_description="SGN-U317065        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 3e-84, score=314)">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47211" stop="48561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47511" g_stop="48261" g_length="751"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="757" r_length="757" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U317065" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47511" e_stop="48261"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAATTCGGCGGGAGCCATTCTATAAGTGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCAATACAAAAGTTAATATCCTTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGGACTACCGAAACTGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCATAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTT-------CAAGACCTATATACCTTTTTAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAACGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATGACAGCATC</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCAC-AATCGAAAGATTACCTGTGATGACAGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335938" ref_strand="-" ref_description="SGN-U335938        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|49533772|gb|AAT66771.1| putative polyprotein [Solanum demissum] (evalue: 4e-59, score=231)">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49231" stop="47230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48931" g_stop="48759" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48758" i_stop="48022" i_length="737">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48021" g_stop="47530" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="664" r_length="491" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U335938" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48931" e_stop="48759"/>
          <exon e_start="48021" e_stop="47530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTTGGTTACTGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCAACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATTTCGTGTTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGACATCGACATCAAAAAGGTTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGAACAGGGTTCCGGAGGTTACTCAGTTCGACCAATTCAGTCTTCACTACAGACTGTAGTTGGGGGTCCACCTCAGACCGGTCAACACTTCTCTGAGAGACCTATGCATGAACCCAGAGAGTGCTATGGATGTGGGGAGATTGGACATATTAAGAGATATTGTCCAAAACAGAGTTACCGACCCCCAATAGCTAGAGGTAGAGGTGGTTATGGAAGAGGCCGTCATTCTGGAGGATGCGGTGGTCGAGGTAATGGTGGTCACCAAAACGGACGGGGTGATGGGCAAACTAGAGCCACTACATCACAACATGGTAGGGGCAACAGACAGACAAGTAATGGGGCCCATTGCTACGCTTTTCCTGGGAGATCTGAAGCGGAGACATCAGATGCTGTCATCACAGGTAATCTTTTGATTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACGTTGTGAATTACTTGACATACCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTAAAAAGGTATATAGGTCTTGAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGTTGATTTTGATGTAATTATGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTTAAGGATGACACTACCCAAGTACCCTCGATTGAGTCAGTTTCGGTAGTCCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAAGGATATTAACTTTTGTATTGATCTTGAACCGGGTACTCGCCCCATTTATATACCCACTTATAGAATGGCTCCCGCCGAATTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGTAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="+" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47814" stop="48972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48114" g_stop="48672" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48114" e_stop="48672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATGTCAAGTAATTCACAACGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCAGATCTCCCAGGAAAAGCGTAGCAATGGGCCCCATTACTTGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCTAGTTTGCCCATCACCCCGTCCGTTTTGGTGACCACCATTACCTCGACCACCGCATCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAGCTATTGGGGGTCGGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTTCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335931" ref_strand="+" ref_description="SGN-U335931        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 1e-33, score=146)">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="49853" stop="48701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49553" g_stop="49001" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U335931" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49553" e_stop="49001"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGATGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGGGTGCAACATGCGGCTACTATGGCTCCTTGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTAC-TGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAACTGAAACCTCCAGTCTTCAAGGGTGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAGGCAACACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335078" ref_strand="+" ref_description="SGN-U335078        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51293" stop="43178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50993" g_stop="50807" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50806" i_stop="50728" i_length="79">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50727" g_stop="50396" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="515" r_length="331" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U335078" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50993" e_stop="50807"/>
          <exon e_start="50727" e_stop="50396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATTGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCATGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATA-TGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATATTAATATACTCAATCTAATGAATTTAATTCCCAAATAAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATAT--GGATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATG...............................................................................GATCGG-GTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAGTATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATG-AATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320645" ref_strand="+" ref_description="SGN-U320645        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | bZIP transcription factor, putative (bZIP69), similar to transcriptional activator RF2a GB:AF005492 GI:2253277 from (Oryza sativa); contains Pfam profile PF00170: bZIP transcription factor | chr1:1834828-1837647 REVERSE | Aliases: T21E18.12, T21E18_12(evalue: 6e-104, score=375) genbank/nr: gi|15221391|ref|NP_172097.1| bZIP protein [Arabidopsis thaliana] gi|25406894|pir||H86195 hypothetical protein [imported] - Arabidopsis thaliana gi|8810469|gb|AAF80130.1| Contains similarity to a b-Zip binding protein from Arabidopsis thaliana gb|Z86093 and contains a b-Zip transcription factor PF|00170 domain.  ESTs gb|AV551499, gb|T04752, gb|AV550784, gb|AV550336, gb|AV545846, gb|AV538486, gb|AV542369, gb|AV538179 come from this gene gi|17065886|emb|CAD12037.1| AtbZIP transcription factor [Arabidopsis thaliana](evalue: 5e-102, score=375)">
      <seq>ggtcctccctgtccgaatttatagtgtttccattctcacacagatttgcctctttgtttatcgtctctcttctccacaagcttttcccttttctctctcgcatgtgataaagctgcttccttctgcttctgcttcccttttcacattttcccttctctgcagatctaatttcaaagctaatcgaaaccgaaaccgtagggaattgatctgggataagcttggttggtgtttgcggaatctacagggtctcagcaaggggtttcatgttctgaggaaaagcaacttggattgtgattttatggttttcctgctataatgttcttgctttgaccggggaaaagtatcattacttgttgatttttggttttctgttggtacggttcttgttggagtatatatatatgtgtgggatgttgggtttgttcctgtgctgttaacatttggaatttgaagggttggggttttttctgtttggatttggagggtttgtatggataaggataagtcttcttcaagccatataggaggttcgttgcctccatcagggagatactcattattttcacctcccggtagtagctccaatgtaaagtcagaacaacctggattagcaaatttacctcccttaggacctggaaatgcttcagaatcaggtcattttggtcatggtttgtcggcagattcaagcctgtttagtcttgatataagccgaatgtctgataacccaccaagaaaatttggtcataggcgtgcccactcagaaattcttactcttcctgatgatattagctttgatagtgatcttggcgttgttggactagatggaccgtctctgtcagatgagactgaggaggacatcttgtcaatgtaccttgacatggataagttcaattcttcaactctgtcttctgaattccaagtgggtgagtcttcttcagctgctccaggttcatcacaaacaacagcaatggcttcaggaacaaataaatttgctcctactgttagtgagaagccaagagttagacatcagcatagccagtccatggatggttcaactacaatcaagccagagatgctcatgtcaggagtggaagagccttcttcagctgaaactaagaaagccacgtcagctgcaaagcttgctgaacttgctcttattgatcctaaacgtgccaagcggatttgggccaacaggcagtcagctgcaagatcaaaggaaaggaaaatgagatatatagcagagcttgagagaaaagttcagactctgcaaacggaagcaactactttatctactcagttgaccctattgcagagagatacaaacggcctgaatgctgaaaacagtgaacttaaactgcgtttacaaacaatggaacaacaggttcacttgcaagatgcgttgaatgatgctttaaaggaggagatacagcatctgaaagtgctaactgggcaaggcatagcaaatggtggacctatgatgaacttcccagcaacctttggaggcaatcagcagttctactctaacaaccaggcaatgcatacattgttggctgcacaacaacttcaacagctccagctacattctcataagcaacaacaccagtttcagcaacatcagctacaccagtttcagcagcaacagttgcagcaccaacaacagcaacagcaacctcttatgcagcagcagcagcagcaggatcaactttcacaagccggagatgtgatgtcaagaggttctctgtcatctcctcaaaatgaaaatgcttctgatggtagttctgtagcaaaggattgaacagctgatggccagagagacaggagttggtgtatgttttaaaaaatatcatgtgttttcccatctagcagctcatttttgtgtttcaaaatcatcacgtgttaaaacaacatctagctcaggttcttgctttcagttagctccttcatctgcattttagtactttgtagggtcatttgacttttagttgaaattgttcaaatcccattctacgcatgtcattttgtcaactatcaacatgattttcttcatgttaccaatattgttggtggtagtttttttggacatcaatcacttatatctctctcacactgttcagtgttcacatttttcgaataatgttttgtggcaatgtctccaactctgcgcgatcgtggagggtaaaattctcatggtgctcctcaataggtaggacttaccagtggcggatccagagcttaaactatggggttcaaggaactccataacttttatctaggcctttaaatgtattcgttaaatatttgatcgtgaacttagttaaatattgtaaaccccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="76282" stop="67789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75983" g_stop="75793" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="75792" i_stop="75578" i_length="215">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="75577" g_stop="75572" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="196" r_length="6" r_score="0.500"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75571" i_stop="75519" i_length="53">
            <donor d_prob="0.900" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75518" g_stop="75444" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="271" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75443" i_stop="75375" i_length="69">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.391" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="75374" g_stop="74467" g_length="908"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="1179" r_length="908" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="74466" i_stop="70543" i_length="3924">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="70542" g_stop="70410" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1180" r_stop="1312" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="70409" i_stop="70157" i_length="253">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="70156" g_stop="70072" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1313" r_stop="1397" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70071" i_stop="69018" i_length="1054">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69017" g_stop="68091" g_length="927"/>
          <reference_exon_boundary r_type="cDNA" r_start="1398" r_stop="2332" r_length="935" r_score="0.954"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="68090" i_stop="68021" i_length="70">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="68020" g_stop="68010" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="2333" r_stop="2343" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U320645" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>2336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75983" e_stop="75793"/>
          <exon e_start="75577" e_stop="75572"/>
          <exon e_start="75518" e_stop="75444"/>
          <exon e_start="75374" e_stop="74467"/>
          <exon e_start="70542" e_stop="70410"/>
          <exon e_start="70156" e_stop="70072"/>
          <exon e_start="69017" e_stop="68091"/>
          <exon e_start="68020" e_stop="68010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTCCCTGTCCGAATTTATAGTGTTTCCATTCTCACACAGATTTGCCTCTTTGTTTATCGTCTCTCTTCTCCACAAGCTTTTCCCTTTTCTCTCTCGCATGTGATAAAGCTGCTTCCTTCTGCTTCTGCTTCCCTTTTCACATTTTTCCCTTCTCTGCAGATCTAATTTCAAAGCTAATCGAAACCGTGTAAGAATTTGCCCCTTTTCTATTCCATTATTTTAATGCATTGTTTTTCATTTTCTTTATCACCCATCTCCTTGATTTGTTGCCCTGTACTTCTGTTTTTGTCTGTGTGTGTTAAATTGAGAAATGGGTTTTGAATTTCTTTGATTTTTGAATGCTGGGTTTGTATTTTTTTTCTTGAATCTTTGTTGTATAGAGTTTCTGTTTATCAGAATTCCATCTTTGTATCATTAAGTTTTGTGGGTTTTGTTCATTTTTTTGTTTTTTTTATTTTCAGAGGGAATTGATCTGGGATAAGCTTGTTTGGTGTTTGCGGAATCTACAGGGTCTCAGCAAGGGGTTTCATGTTCTGGTATAGCTAACTTTTGTTAAAGTAATTCGGTTTCGGTGGAATTTGAATACCCCATGATTTTAAATGCAGAGGAAAAGCAACTTGGATTGTGATTTTATGGTTTTCCTGCTATAATGTTCTTGCTTTGACCGGGGAAAAGTATCATTACTTGTTGATTTTTGGTTTTCTGTTGGTACGGTTCTTGTTGGAGTATATATATATGTGTGGGATGTTGGGTTTGTTCCTGTGCTGTTAACATTTGGAATTTGAAGGGTTGGGGTTTTTTCTGTTTGGATTTGGAGGGTTTGTATGGATAAGGATAAGTCTTCTTCAAGCCATATAGGAGGTTCGTTGCCTCCATCAGGGAGATACTCATTATTTTCACCTCCCGGTAGTAGCTCCAATGTAAAGTCAGAACAACCTGGATTAGCAAATTTACCTCCCTTAGGACCTGGAAATGCTTCAGAATCAGGTCATTTTGGTCATGGTTTGTCGGCAGATTCAAGCCTGTTTAGTCTTGATATAAGCCGAATGTCTGATAACCCACCAAGAAAATTTGGTCATAGGCGTGCCCACTCAGAAATTCTTACTCTTCCTGATGATATTAGCTTTGATAGTGATCTTGGCGTTGTTGGACTAGATGGACCGTCTCTGTCAGATGAGACTGAGGAGGACATCTTGTCAATGTACCTTGACATGGATAAGTTCAATTCTTCAACTCTGTCTTCTGAATTCCAAGTGGGTGAGTCTTCTTCAGCTGCTCCAGGTTCATCACAAACAACAGCAATGGCTTCAGGAACAAATAAATTTGCTCCTACTGTTAGTGAGAAGCCAAGAGTTAGACATCAGCATAGCCAGTCCATGGATGGTTCAACTACAATCAAGCCAGAGATGCTCATGTCAGGAGTGGAAGAGCCTTCTTCAGCTGAAACTAAGAAAGCCACGTCAGCTGCAAAGCTTGCTGAACTTGCTCTTATTGATCCTAAACGTGCCAAGCGGTAAGGCTTTCTATGGAAATGTTGTTGCTCATTTACTATAGCAGTCTCTTTAACATTATTTTAGCTTGGCCTTGTCATTATATTTTGCTAAACTGGCACTGCTTAGGATGATACCGTTACGTGGAGGTCTGGTGGCAGACTAGAGTCTCCTAAACTATGAGCCCACTAAATGTGTGCTGGATGTTTAAAGCGGGCTTAGATATTATGCTTCATTGTTTTTTTATGAAAGCCTGCTCTGTTTTGGTGATAATCATTCATTCTGCTGGTGGTTAGGCATTTTATCTGTATTTTTCCTAGCTACTAGCTCCTTGAACTTTTGGATTTTGTTTAATGAAGCAGTTCTTGATGGAACTTCTAAAGGTCTGCCTGCGGCTTCGTCTGCTCCCTTTTCCTGTTCTAAGGCTGCCTCTGGCTGCTTCTGTCATCTTTTGCTGTTCAAAGGTTGAAAAGACTGAAATTATGAGAGTTACAGGAAGGAAAAATTAAAAAGAATAGACTGACCAGGCCCTTCTGTCTCTCTACTCTATCTGTCCAGCAAGTTGTTCCTGCTCCCCGAGCATTTCATTTCAATTTCTTGTCCTCTCCAGCTCTTCCTTGAGCCTACATCTGAACAAGCTCAGCTCCCCAAAAGTTGGTGTGTTCCAAACCACCTTTCAATAACAAATTCCTGCTTTCTTGGGTCCTCTAAATTAGTTAAAGTTAAACCTTTGTTGTTGGCTATGGGGGCCCACTGCCCCTCCCTTACTTTATAGACAATTTAAATTTATCTTCAAGAGGGAGGGGAAGGGTCAGGGAACATATGAGATTGAACACCCAAGGATATGACCTAGTGGCCAATGATGTGGGTGCAAACTCTGGAAACCCGTCCTAACAGAGACAAAAAGACGCTAGGTAATTTCTGGGCATTTGCTTAAGCCTTGCTGGCTGAGTACCCAGTAAGGTAGAAGGTAGCAAGTAGCCGGTGAAATAGTCGAGGTCCCACCATTCTTGTCTGTGCTCCACCTTAATGGAAAAAAAATAAGAGATCAAAAAAACTATGGCCCCTCCAAGGAGTGTGAAGCAGACAATTGTAGCTAATGAAGAAAGGTAAATCAATGGTGGCACATACAGAGAGACTGTGATTGTCCTTACAGGATTAGAGCCAAATACAATTCAAATGGCAGTAGAAATTTTTTTTATAAGGTTACTGGCTTGCACAAATTAGAGAAAAGTTATGGGATGGTTCGGTGTCTTAAGCTTATTTGTTGTCCTAGTCAAACTGTTCTTTTCCGGGTCCCATGCTTTTTTTGCTCAGCGACTTAGCAGTAGGCTAGTAGCTTCATTATGTTTTGTTTTGGTGGGAAAACTTAAATGTTGGTTCATTGCAGATGAAACTATAGTAGTACTTTAGTCTTGGTCTTTCTCCTGATATTAAATTAAGGCTCTTCTTATCTTTTGCTTTCTCGTGTCCTTTTACTTAGCAAAAATATTAAATAGACTTAAGGGAACTATATTACAATGTAGAGTGAGAAAATTGATTAATAGGAGCTGAATAGCAATAATGTTGTTTCTTTTGGACATCTAAGTTTAGTGACTATACTTGTAAATTAAAAACGGTTTTATAGAGTATTATCAAGAGTAAAATAAAGACTTTAGAATGCTAATATGCATGTTAACCAAGCCCGGTTTTATAGAGTTTAGTCAAGATGATTAAAATAAAGACTTTATAGGCGTCCACTATCAGTCAATGAACCAGGTCTCGACTCAGTAAGAACAGAATGTAAGCACAGACAGTAGTTAGCATCCACTATAGTTAACGGACCAGGTCTTGTGACTCAGCAAGAACAATAGCTGAAATAAGTGCAAAAAGTAAATAGCTGAAGGTAAAATTTGCACAAGCACTTTACGTGGAAACCTCCTTGCTCAAGGGAGTAAAACCACGACCTATCACACATGATTTTCAACTGTTTCACTAATCTTCTTTAAGCAAAAGTGAACCGCAGTTACAACCAATGTGAGAAAAAGTTATTAATCTCACGACCAAGTAATAACCTATTACTTGAAGAGTCTAAGCAGATGTTAGTCTGCCCACTAAGCTATCACCACTAGACAAATTAGGATTTGACTAAGCAACACGCAGGTTGCCTACTAAACCACCTAACTAAGCAGCACATACGGCTGCCTACTAAGCTATCACCACTAGACAACTTAGAATTTCAACTAAGCGAATGTCACACCGCCAACTAAATCACCTACCACTAGATAACTTAGAATTTGACTAAGCAACAACAATGTTGCCCTCTAAATCAGTTAGACTCAACTAATTTAGACCTTTTCACAAACCAAACTATCTGAATCCTTTATAGACTAGGAACAAGTTTACAATATATGGACGAAAATATAACTCCTAAGACACACTCTAATGCTTGCAACTTGATCAGGTCCTTGTTGTGTTTGCCGGAGAATACTTCACCAAAATGGTCTTTGCTTGTATACTTCAGAAGTTTCAAGATGCAAAAAAACTATAAATGAAAGAGACAAACTCAAACTCAACAAAGATGCTTCAACACTTTATAGATCTTTTTGATGAGTATGAGTATTGTTCTTTCTTGAAGATGGCTTTTTCCTTTTAACCTTGTGAGTTTTAATTTGCCAAAATCTTGTGTTTGTGTTTTGGAGAAGAGATTGTATCACCATGAACACAAACTCTTGGGACAAAGCTATTGGCCGAGAGTACGCTGTCATGAAAAGTTGTGCACCAACCACATCAGGGTTGACAACTTTTTGATAGTTGTCTTTTCGTCCTTTTCTCGTACGTAGAGTTTTCGGGACCAGGTCCCTTGCTGCGTTCTTTAATGCTTGAGTTCTTTGACAAAAGACTTGCTGACTTTTTCTCTTCTTGAATGAATGAACTTAATATGTTGTTTGTCATGTTGAATGTATCAACTCCATTTTGATTGGTTCAGTATGCTGGCGCCTCACCTACCACTGACAGGACAACTTTACAATTGTACACCATTATTGGTGCAGTACGCTGCACTTTTTACCTACCATCTGACATGGCATCTTTTTAGCTGTTCCCAGGATGAATTCGGACATTCTGCCAGGGGCCCGGTCCCTGCATTTGTGAGGATCATCAAAACATCTAGAATATTATATTTTCTCCCTTTTTGATGATTACACACAAATGTTCCTCACATTGAGTTTATTCATTAAGTTGCCCTGTCATCAGTCCCAATAACAAGGATCTGTGTCCCTTGTTAGATCAATAAGTTTATTAAATCATCAAAACTTAACATTAGCTCCAAAATAATATTTACCAACTCCATGAATGGTAAGGCAAAGTATAAGAACAATGAACATGTCTATTCACTATGACAAATAGAAAATTATTTTGAAATCCTCGACCAATCTATAAGAAAATACTTTTAATTTCTTCTGCTCAAACAGTAAATTATAGAAATTAGAAACTAGTACCATATGAGAATGGAGAAGTTTAAAAAGGTTATATAAATGAAGGATGTATATCCCAAGCTAGTGGTTCATTCGCTAAATCTATCAGAGAAAAAGATGGATGGTTTGTAAACAGTCCTTTTACCTTTTGGCTATGCTATTACTTGAAGTGGTGCTGAGGTTTGCTGTCTCCAGTCTGAAACCATTTCTCTATGTATCCATGAGGCCTTCTTTTTCCTGTCTTTTGCTCTCTTTTTAATCAGACAAATCATTAAGTTTGCTAAATACTGTTACTAGCAAAAAAAGGTTTCTTGTTGCTATCTAAGTCTTTGCACAGCTTTCTGAAAGTATTCATAGTGCATTGATGTAGGAGATCCACCTGTTTTAAGGTCTTTTGTGTTCCTTGAATTTGTTTGAATTTGTCTGATGTAGTTGTTTAAAAGTTAAGCCAATTAGTTAATCATCACTGTATTTGCTTATGCTGTGCAATAGGATTTGGGCCAACAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAAATGAGATATATAGCAGAGCTTGAGAGAAAAGTTCAGACTCTGCAAACGGAAGCAACTACTTTATCTACTCAGTTGACCCTATTGCAGGTGTATATCAGTTTCTCTCATTACTCAGTTATTTTTTGTGTTCTTTCCTCTTTTTATTTCTGTTGTTTTCTGTTATTGGAAACATGTCTAGTGTGGTTGAAGTGATGGAAGTAGATAAGTTCTTGGTCTAGAATCTGCAGCATTTGCTTGCACATGGAAAAATGTGCAGATATATGTATCTTCAGCCTTTTTCTCACGTATAACATAAGACTATTGGTTTTGATTTGCCTTTTTTTTTCTCCATATGAAACAGAGAGATACAAACGGCCTGAATGCTGAAAACAGTGAACTTAAACTGCGTTTACAAACAATGGAACAACAGGTTCACTTGCAAGATGGTAAGAATCTGAGCATGACTTCTTTTAGTAAACTTTTTGCCCATAACCCACCTCCTCTTTTTATCTGTCTGAACAATGGTTGCCGTTTCTCAATGGCATCTAGAGTGACTTTAGTTCAAGTGTTCGACCATTTAAGATGATTCAAAGTGGATTTGTTGTCAACCGCAAGTTAATATCTGGCTGTATTTAGGCTTCGTTGGTTTCAAGAATTTCCTCAATTTCAGAAGAAAGTAAAAATCAATTTTGATATACTTGATCATTTTCACATTGGGTGTGTTAACTGCGTTTTTTGTGGTTAAAAATAAAGTAATTCTGCCATATTCTCATCTTATGGTACAAAAACCGAGATAACATGAATTCCAGTTTGACCTTACAAGGTCAAACATAGTTTAAATTTGGACCGGGTTGACGTAGATATAGGAATACAATATATAGTCCAAATAATTTTGAAGTTGGTACTTTTTGAATTCTAATAGTTGTACTGGAGGTTAGATTTCAGATGTTAGAACTTCAAAAGCTTTTGTTTCTCATAACATTATCCTGTGGTTATAGAAGTGAACATTGAGAAATTCATATTGTTAGTGTCATGATTGGCACCCATGTATTAGGTAATATTCTGTTTAATCCGTAAAAAATCTTGATAAGTATGTCAGTGTTAAGAAATGTGAGGAAGTTATCAATAAGGTGGTTAGGAGACACCGAGAGGCTGCTAATCACCTTGTAGGTTCTTGAAACCATTGAAATTTTCAATGATCATATTTCAACCAGAACCTTGTTTTTCTGCTCTCCGTGAACAATGCAATTAGGCAGATAAGAACTTCTTCAGTCAAATTCCGCTTGCAACTCTATGTGGATAATGGATTTAGCACCTGACTACTGAGTAACATATGCCTAGGGAAAACACTTCCATGAGATTGCTAGAGTTGCATATGTAATTTCCTTGGATAGGAATTTGTGAACAACTAATTCATCTCTACCAATTAGTTGGAGTTTTTTGTGTAGAGTTGCTAATAGGTATTTTGATCTGTTTCTTCTTCTTCTTCTTTCTATGTAGCGTTGAATGATGCTTTAAAGGAGGAGATACAGCATCTGAAAGTGCTAACTGGGCAAGGCATAGCAAATGGTGGACCTATGATGAACTTCCCAGCAACCTTTGGAGGCAATCAGCAGTTCTACTCTAACAACCAGGCAATGCATACATTGTTGGCTGCACAACAACTTCAACAGCTCCAGCTACATTCTCATAAGCAACAACACCAGTTTCAGCAACATCAGCTACACCAGTTTCAGCAGCAACAGTTGCAGCACCAACAACAGCAACAGCAACCTCTTATGCAGCAGCAGCAGCAGCAGGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAACGCTTCTGATGTTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGATGGTGTATGTTTTAAAAATCATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTGAAACAACATCTAGCTCAGGTTCTCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTACTTTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTATGCATATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACACTGTTCAGTGTTCACATTTTTCGAATAATGTTTTGT-G----G-------CT-TGCGCGATCGTGGAGGGTAAAATTCTCATGGTGCTCCTCAATAGGTAGGATTTACCAGAGGCGGATCCAGAGCGTAAACTATGGGGTTCAAGGAACTCCATAACTTTTATCTAGGCCTTTAAATGTATTCGTTAAATATTTGATCGTGAACTTGGTTAAATATTGTAATCCCCTATCCCTGTACATAATACTGGTTGGTTCCATCTTATAACTGTCTCTTCTAAATCTGTTATATCATTTCAGAGAAAAAGTTA</genome_strand>
        <mrna_strand>GGTCCTCCCTGTCCGAATTTATAGTGTTTCCATTCTCACACAGATTTGCCTCTTTGTTTATCGTCTCTCTTCTCCACAAGCTTTTCCCTTTTCTCTCTCGCATGTGATAAAGCTGCTTCCTTCTGCTTCTGCTTCCCTTTTCACA-TTTTCCCTTCTCTGCAGATCTAATTTCAAAGCTAATCGAAACCGA.......................................................................................................................................................................................................................AACCGT.....................................................AGGGAATTGATCTGGGATAAGCTTGGTTGGTGTTTGCGGAATCTACAGGGTCTCAGCAAGGGGTTTCATGTTCTG.....................................................................AGGAAAAGCAACTTGGATTGTGATTTTATGGTTTTCCTGCTATAATGTTCTTGCTTTGACCGGGGAAAAGTATCATTACTTGTTGATTTTTGGTTTTCTGTTGGTACGGTTCTTGTTGGAGTATATATATATGTGTGGGATGTTGGGTTTGTTCCTGTGCTGTTAACATTTGGAATTTGAAGGGTTGGGGTTTTTTCTGTTTGGATTTGGAGGGTTTGTATGGATAAGGATAAGTCTTCTTCAAGCCATATAGGAGGTTCGTTGCCTCCATCAGGGAGATACTCATTATTTTCACCTCCCGGTAGTAGCTCCAATGTAAAGTCAGAACAACCTGGATTAGCAAATTTACCTCCCTTAGGACCTGGAAATGCTTCAGAATCAGGTCATTTTGGTCATGGTTTGTCGGCAGATTCAAGCCTGTTTAGTCTTGATATAAGCCGAATGTCTGATAACCCACCAAGAAAATTTGGTCATAGGCGTGCCCACTCAGAAATTCTTACTCTTCCTGATGATATTAGCTTTGATAGTGATCTTGGCGTTGTTGGACTAGATGGACCGTCTCTGTCAGATGAGACTGAGGAGGACATCTTGTCAATGTACCTTGACATGGATAAGTTCAATTCTTCAACTCTGTCTTCTGAATTCCAAGTGGGTGAGTCTTCTTCAGCTGCTCCAGGTTCATCACAAACAACAGCAATGGCTTCAGGAACAAATAAATTTGCTCCTACTGTTAGTGAGAAGCCAAGAGTTAGACATCAGCATAGCCAGTCCATGGATGGTTCAACTACAATCAAGCCAGAGATGCTCATGTCAGGAGTGGAAGAGCCTTCTTCAGCTGAAACTAAGAAAGCCACGTCAGCTGCAAAGCTTGCTGAACTTGCTCTTATTGATCCTAAACGTGCCAAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGGCCAACAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAAATGAGATATATAGCAGAGCTTGAGAGAAAAGTTCAGACTCTGCAAACGGAAGCAACTACTTTATCTACTCAGTTGACCCTATTGCAG.............................................................................................................................................................................................................................................................AGAGATACAAACGGCCTGAATGCTGAAAACAGTGAACTTAAACTGCGTTTACAAACAATGGAACAACAGGTTCACTTGCAAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAATGATGCTTTAAAGGAGGAGATACAGCATCTGAAAGTGCTAACTGGGCAAGGCATAGCAAATGGTGGACCTATGATGAACTTCCCAGCAACCTTTGGAGGCAATCAGCAGTTCTACTCTAACAACCAGGCAATGCATACATTGTTGGCTGCACAACAACTTCAACAGCTCCAGCTACATTCTCATAAGCAACAACACCAGTTTCAGCAACATCAGCTACACCAGTTTCAGCAGCAACAGTTGCAGCACCAACAACAGCAACAGCAACCTCTTATGCAGCAGCAGCAGCAGCAGGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAATGCTTCTGATGGTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGTTGGTGTATGTTTTAAAAAATATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTAAAACAACATCTAGCTCAGG-T-TCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTAC-TTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTACGC--ATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACACTGTTCAGTGTTCACATTTTTCGAATAATGTTTTGTGGCAATGTCTCCAACTCTGCGCGATCGTGGAGGGTAAAATTCTCATGGTGCTCCTCAATAGGTAGGACTTACCAGTGGCGGATCCAGAGCTTAAACTATGGGGTTCAAGGAACTCCATAACTTTTATCTAGGCCTTTAAATGTATTCGTTAAATATTTGATCGTGAACTTAGTTAAATATTGTAAACCCC......................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337173" ref_strand="-" ref_description="SGN-U337173        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | bZIP transcription factor, putative (bZIP69), similar to transcriptional activator RF2a GB:AF005492 GI:2253277 from (Oryza sativa); contains Pfam profile PF00170: bZIP transcription factor | chr1:1834828-1837647 REVERSE | Aliases: T21E18.12, T21E18_12(evalue: 9e-16, score=79.3) genbank/nr: gi|15221391|ref|NP_172097.1| bZIP protein [Arabidopsis thaliana] gi|25406894|pir||H86195 hypothetical protein [imported] - Arabidopsis thaliana gi|8810469|gb|AAF80130.1| Contains similarity to a b-Zip binding protein from Arabidopsis thaliana gb|Z86093 and contains a b-Zip transcription factor PF|00170 domain.  ESTs gb|AV551499, gb|T04752, gb|AV550784, gb|AV550336, gb|AV545846, gb|AV538486, gb|AV542369, gb|AV538179 come from this gene gi|17065886|emb|CAD12037.1| AtbZIP transcription factor [Arabidopsis thaliana](evalue: 6e-14, score=79.3)">
      <seq>tcagctgcaaagcttgctgaacttgctcttatgattcctaaacgtgccaagcggatttgggccaacaggcagtccagctgcaagatcaactttcacaagccggagatgtgatgtcaagaggttctctgtcatctcctcaaaatgaaaacgcttctgatgttagttctgtagcaaaggattgaacagctgatggccagagagacaggagatggtgtatgttttaaaaatcatcatgtgttttcccatctagcagctcatttttgtgtttcaaaatcatcacgtgttgaaacaacatctagctcaggttctcttgctttcagttagctccttcatctgcattttagtacttttgtagggtcatttgacttttagttgaaattgttcaaatcccattctatgcatatgtcattttgtcaactatcaacatgattttcttcatgttaccaatattgttggtggtagtttttttggacatcaatcacttatatctctctcacaaaaaaaaaaaaaaaaaaaaaaactcgaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74819" stop="68004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74519" g_stop="74467" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74466" i_stop="70543" i_length="3924">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="70542" g_stop="70522" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="74" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70521" i_stop="68728" i_length="1794">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68727" g_stop="68304" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="498" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="521"/>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U337173" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337173" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74519" e_stop="74467"/>
          <exon e_start="70542" e_stop="70522"/>
          <exon e_start="68727" e_stop="68304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTGCAAAGCTTGCTGAACTTGCTCTTATTGATCCTAAACGTGCCAAGCGGTAAGGCTTTCTATGGAAATGTTGTTGCTCATTTACTATAGCAGTCTCTTTAACATTATTTTAGCTTGGCCTTGTCATTATATTTTGCTAAACTGGCACTGCTTAGGATGATACCGTTACGTGGAGGTCTGGTGGCAGACTAGAGTCTCCTAAACTATGAGCCCACTAAATGTGTGCTGGATGTTTAAAGCGGGCTTAGATATTATGCTTCATTGTTTTTTTATGAAAGCCTGCTCTGTTTTGGTGATAATCATTCATTCTGCTGGTGGTTAGGCATTTTATCTGTATTTTTCCTAGCTACTAGCTCCTTGAACTTTTGGATTTTGTTTAATGAAGCAGTTCTTGATGGAACTTCTAAAGGTCTGCCTGCGGCTTCGTCTGCTCCCTTTTCCTGTTCTAAGGCTGCCTCTGGCTGCTTCTGTCATCTTTTGCTGTTCAAAGGTTGAAAAGACTGAAATTATGAGAGTTACAGGAAGGAAAAATTAAAAAGAATAGACTGACCAGGCCCTTCTGTCTCTCTACTCTATCTGTCCAGCAAGTTGTTCCTGCTCCCCGAGCATTTCATTTCAATTTCTTGTCCTCTCCAGCTCTTCCTTGAGCCTACATCTGAACAAGCTCAGCTCCCCAAAAGTTGGTGTGTTCCAAACCACCTTTCAATAACAAATTCCTGCTTTCTTGGGTCCTCTAAATTAGTTAAAGTTAAACCTTTGTTGTTGGCTATGGGGGCCCACTGCCCCTCCCTTACTTTATAGACAATTTAAATTTATCTTCAAGAGGGAGGGGAAGGGTCAGGGAACATATGAGATTGAACACCCAAGGATATGACCTAGTGGCCAATGATGTGGGTGCAAACTCTGGAAACCCGTCCTAACAGAGACAAAAAGACGCTAGGTAATTTCTGGGCATTTGCTTAAGCCTTGCTGGCTGAGTACCCAGTAAGGTAGAAGGTAGCAAGTAGCCGGTGAAATAGTCGAGGTCCCACCATTCTTGTCTGTGCTCCACCTTAATGGAAAAAAAATAAGAGATCAAAAAAACTATGGCCCCTCCAAGGAGTGTGAAGCAGACAATTGTAGCTAATGAAGAAAGGTAAATCAATGGTGGCACATACAGAGAGACTGTGATTGTCCTTACAGGATTAGAGCCAAATACAATTCAAATGGCAGTAGAAATTTTTTTTATAAGGTTACTGGCTTGCACAAATTAGAGAAAAGTTATGGGATGGTTCGGTGTCTTAAGCTTATTTGTTGTCCTAGTCAAACTGTTCTTTTCCGGGTCCCATGCTTTTTTTGCTCAGCGACTTAGCAGTAGGCTAGTAGCTTCATTATGTTTTGTTTTGGTGGGAAAACTTAAATGTTGGTTCATTGCAGATGAAACTATAGTAGTACTTTAGTCTTGGTCTTTCTCCTGATATTAAATTAAGGCTCTTCTTATCTTTTGCTTTCTCGTGTCCTTTTACTTAGCAAAAATATTAAATAGACTTAAGGGAACTATATTACAATGTAGAGTGAGAAAATTGATTAATAGGAGCTGAATAGCAATAATGTTGTTTCTTTTGGACATCTAAGTTTAGTGACTATACTTGTAAATTAAAAACGGTTTTATAGAGTATTATCAAGAGTAAAATAAAGACTTTAGAATGCTAATATGCATGTTAACCAAGCCCGGTTTTATAGAGTTTAGTCAAGATGATTAAAATAAAGACTTTATAGGCGTCCACTATCAGTCAATGAACCAGGTCTCGACTCAGTAAGAACAGAATGTAAGCACAGACAGTAGTTAGCATCCACTATAGTTAACGGACCAGGTCTTGTGACTCAGCAAGAACAATAGCTGAAATAAGTGCAAAAAGTAAATAGCTGAAGGTAAAATTTGCACAAGCACTTTACGTGGAAACCTCCTTGCTCAAGGGAGTAAAACCACGACCTATCACACATGATTTTCAACTGTTTCACTAATCTTCTTTAAGCAAAAGTGAACCGCAGTTACAACCAATGTGAGAAAAAGTTATTAATCTCACGACCAAGTAATAACCTATTACTTGAAGAGTCTAAGCAGATGTTAGTCTGCCCACTAAGCTATCACCACTAGACAAATTAGGATTTGACTAAGCAACACGCAGGTTGCCTACTAAACCACCTAACTAAGCAGCACATACGGCTGCCTACTAAGCTATCACCACTAGACAACTTAGAATTTCAACTAAGCGAATGTCACACCGCCAACTAAATCACCTACCACTAGATAACTTAGAATTTGACTAAGCAACAACAATGTTGCCCTCTAAATCAGTTAGACTCAACTAATTTAGACCTTTTCACAAACCAAACTATCTGAATCCTTTATAGACTAGGAACAAGTTTACAATATATGGACGAAAATATAACTCCTAAGACACACTCTAATGCTTGCAACTTGATCAGGTCCTTGTTGTGTTTGCCGGAGAATACTTCACCAAAATGGTCTTTGCTTGTATACTTCAGAAGTTTCAAGATGCAAAAAAACTATAAATGAAAGAGACAAACTCAAACTCAACAAAGATGCTTCAACACTTTATAGATCTTTTTGATGAGTATGAGTATTGTTCTTTCTTGAAGATGGCTTTTTCCTTTTAACCTTGTGAGTTTTAATTTGCCAAAATCTTGTGTTTGTGTTTTGGAGAAGAGATTGTATCACCATGAACACAAACTCTTGGGACAAAGCTATTGGCCGAGAGTACGCTGTCATGAAAAGTTGTGCACCAACCACATCAGGGTTGACAACTTTTTGATAGTTGTCTTTTCGTCCTTTTCTCGTACGTAGAGTTTTCGGGACCAGGTCCCTTGCTGCGTTCTTTAATGCTTGAGTTCTTTGACAAAAGACTTGCTGACTTTTTCTCTTCTTGAATGAATGAACTTAATATGTTGTTTGTCATGTTGAATGTATCAACTCCATTTTGATTGGTTCAGTATGCTGGCGCCTCACCTACCACTGACAGGACAACTTTACAATTGTACACCATTATTGGTGCAGTACGCTGCACTTTTTACCTACCATCTGACATGGCATCTTTTTAGCTGTTCCCAGGATGAATTCGGACATTCTGCCAGGGGCCCGGTCCCTGCATTTGTGAGGATCATCAAAACATCTAGAATATTATATTTTCTCCCTTTTTGATGATTACACACAAATGTTCCTCACATTGAGTTTATTCATTAAGTTGCCCTGTCATCAGTCCCAATAACAAGGATCTGTGTCCCTTGTTAGATCAATAAGTTTATTAAATCATCAAAACTTAACATTAGCTCCAAAATAATATTTACCAACTCCATGAATGGTAAGGCAAAGTATAAGAACAATGAACATGTCTATTCACTATGACAAATAGAAAATTATTTTGAAATCCTCGACCAATCTATAAGAAAATACTTTTAATTTCTTCTGCTCAAACAGTAAATTATAGAAATTAGAAACTAGTACCATATGAGAATGGAGAAGTTTAAAAAGGTTATATAAATGAAGGATGTATATCCCAAGCTAGTGGTTCATTCGCTAAATCTATCAGAGAAAAAGATGGATGGTTTGTAAACAGTCCTTTTACCTTTTGGCTATGCTATTACTTGAAGTGGTGCTGAGGTTTGCTGTCTCCAGTCTGAAACCATTTCTCTATGTATCCATGAGGCCTTCTTTTTCCTGTCTTTTGCTCTCTTTTTAATCAGACAAATCATTAAGTTTGCTAAATACTGTTACTAGCAAAAAAAGGTTTCTTGTTGCTATCTAAGTCTTTGCACAGCTTTCTGAAAGTATTCATAGTGCATTGATGTAGGAGATCCACCTGTTTTAAGGTCTTTTGTGTTCCTTGAATTTGTTTGAATTTGTCTGATGTAGTTGTTTAAAAGTTAAGCCAATTAGTTAATCATCACTGTATTTGCTTATGCTGTGCAATAGGATTTGGGCCAACAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAAATGAGATATATAGCAGAGCTTGAGAGAAAAGTTCAGACTCTGCAAACGGAAGCAACTACTTTATCTACTCAGTTGACCCTATTGCAGGTGTATATCAGTTTCTCTCATTACTCAGTTATTTTTTGTGTTCTTTCCTCTTTTTATTTCTGTTGTTTTCTGTTATTGGAAACATGTCTAGTGTGGTTGAAGTGATGGAAGTAGATAAGTTCTTGGTCTAGAATCTGCAGCATTTGCTTGCACATGGAAAAATGTGCAGATATATGTATCTTCAGCCTTTTTCTCACGTATAACATAAGACTATTGGTTTTGATTTGCCTTTTTTTTTCTCCATATGAAACAGAGAGATACAAACGGCCTGAATGCTGAAAACAGTGAACTTAAACTGCGTTTACAAACAATGGAACAACAGGTTCACTTGCAAGATGGTAAGAATCTGAGCATGACTTCTTTTAGTAAACTTTTTGCCCATAACCCACCTCCTCTTTTTATCTGTCTGAACAATGGTTGCCGTTTCTCAATGGCATCTAGAGTGACTTTAGTTCAAGTGTTCGACCATTTAAGATGATTCAAAGTGGATTTGTTGTCAACCGCAAGTTAATATCTGGCTGTATTTAGGCTTCGTTGGTTTCAAGAATTTCCTCAATTTCAGAAGAAAGTAAAAATCAATTTTGATATACTTGATCATTTTCACATTGGGTGTGTTAACTGCGTTTTTTGTGGTTAAAAATAAAGTAATTCTGCCATATTCTCATCTTATGGTACAAAAACCGAGATAACATGAATTCCAGTTTGACCTTACAAGGTCAAACATAGTTTAAATTTGGACCGGGTTGACGTAGATATAGGAATACAATATATAGTCCAAATAATTTTGAAGTTGGTACTTTTTGAATTCTAATAGTTGTACTGGAGGTTAGATTTCAGATGTTAGAACTTCAAAAGCTTTTGTTTCTCATAACATTATCCTGTGGTTATAGAAGTGAACATTGAGAAATTCATATTGTTAGTGTCATGATTGGCACCCATGTATTAGGTAATATTCTGTTTAATCCGTAAAAAATCTTGATAAGTATGTCAGTGTTAAGAAATGTGAGGAAGTTATCAATAAGGTGGTTAGGAGACACCGAGAGGCTGCTAATCACCTTGTAGGTTCTTGAAACCATTGAAATTTTCAATGATCATATTTCAACCAGAACCTTGTTTTTCTGCTCTCCGTGAACAATGCAATTAGGCAGATAAGAACTTCTTCAGTCAAATTCCGCTTGCAACTCTATGTGGATAATGGATTTAGCACCTGACTACTGAGTAACATATGCCTAGGGAAAACACTTCCATGAGATTGCTAGAGTTGCATATGTAATTTCCTTGGATAGGAATTTGTGAACAACTAATTCATCTCTACCAATTAGTTGGAGTTTTTTGTGTAGAGTTGCTAATAGGTATTTTGATCTGTTTCTTCTTCTTCTTCTTTCTATGTAGCGTTGAATGATGCTTTAAAGGAGGAGATACAGCATCTGAAAGTGCTAACTGGGCAAGGCATAGCAAATGGTGGACCTATGATGAACTTCCCAGCAACCTTTGGAGGCAATCAGCAGTTCTACTCTAACAACCAGGCAATGCATACATTGTTGGCTGCACAACAACTTCAACAGCTCCAGCTACATTCTCATAAGCAACAACACCAGTTTCAGCAACATCAGCTACACCAGTTTCAGCAGCAACAGTTGCAGCACCAACAACAGCAACAGCAACCTCTTATGCAGCAGCAGCAGCAGCAGGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAACGCTTCTGATGTTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGATGGTGTATGTTTTAAAAATCATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTGAAACAACATCTAGCTCAGGTTCTCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTACTTTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTATGCATATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACA</genome_strand>
        <mrna_strand>TCAGCTGCAAAGCTTGCTGAACTTGCTCTTATGATTCCTAAACGTGCCAAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGGGCCAACAGGCAGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGCAAGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAACGCTTCTGATGTTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGATGGTGTATGTTTTAAAAATCATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTGAAACAACATCTAGCTCAGGTTCTCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTACTTTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTATGCATATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345807" ref_strand="+" ref_description="SGN-U345807        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains similarity to F-box protein FBX3 GI:6103643 from (Homo sapiens) ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:1853076-1855021 REVERSE | Aliases: T21E18.16, T21E18_16(evalue: 3e-52, score=202) genbank/nr: gi|18390613|ref|NP_563759.1| F-box protein family [Arabidopsis thaliana] gi|25373377|pir||D86196 hypothetical protein [imported] - Arabidopsis thaliana gi|8810473|gb|AAF80134.1| Contains similarity to a F-box protein FBA from Mus musculus gb|AF233226.  ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534, gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939, gb|T21404, gb|T44511, gb|H37689 come from this gene. [Arabidopsis thaliana] gi|16930491|gb|AAL31931.1| At1g06110/T21E18_13 [Arabidopsis thaliana] gi|20466211|gb|AAM20423.1| unknown protein [Arabidopsis thaliana] gi|25084008|gb|AAN72153.1| unknown protein [Arabidopsis thaliana](evalue: 2e-50, score=202)">
      <seq>ctgttacaaatggtgtaaaggtccgtgcttcttctgtgttcgtcccagagttcagtaccattcaagatgaatatgagaagagtttttttgcttattctatccgcatgtctctttcacctgaaggatgcataatgaatgggatggccttcaattcctgccaactatattgtagacattggatcatccgctgcaatgataatgttgtagataatgtaaatggagaagcggtgataggaaagtttccactgctacgacccggggaggaagaatttgtctatcagagttgctcatctcaacaagattcaccaggctcgattgaaggatcttttacttttgtacctggaagattagcagatccaaaaggtagtccgttcgaagctgtggtgtcaagatttccccttgtgatgccggactatattttctgatggaactcattcgaagtccactcttctgtgttatgcggttggttttgtagtgaacaagcactatctttactcctgttagtctatgtgtgattttcatccatcctcccttcctgttgtgcttcattggtttactattatgttcttttcctttgagaagaaagttctttgaactccggccaacgtagtactgtcttgtagaaaaggatatacaacatgtaataccaaacttcgcgttgtgtcgaanaaaaaaaaaanaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="82846" stop="77035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82546" g_stop="82527" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82526" i_stop="82420" i_length="107">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82419" g_stop="82201" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="239" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82200" i_stop="78968" i_length="3233">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="78967" g_stop="78861" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="346" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="78860" i_stop="77657" i_length="1204">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77656" g_stop="77335" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="668" r_length="322" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="670" polyA_stop="695"/>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U345807" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="82546" e_stop="82527"/>
          <exon e_start="82419" e_stop="82201"/>
          <exon e_start="78967" e_stop="78861"/>
          <exon e_start="77656" e_stop="77335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTACAAATGGTGTAAAGGTAATTGTTCTGATACCATGCAGCAAATAAAATGAGCGTTGCTCTTGTCAGTTGTTTCTGGTTTTAATTCCATTCTATAGACTAGACTGATAGTTAAATCATGTCAGGTCCGTGCTTCTTCTGTGTTCGTCCCAGAGTTCAGTACCATTCAAGATGAATATGAGAAGAGTTTTTTTGCTTATTCTATCCGCATGTCTCTTTCACCTGAAGGATGCATAATGAATGGGATGGCCTTCAATTCCTGCCAACTATATTGTAGACATTGGATCATCCGCTGCAATGATAATGTTGTAGATAATGTAAATGGAGAAGCGGTGATAGGAAAGGTATCATTTTTGTAAAGTTTTTTTATGAGGAGACCACCCTTATTAATTAAAACGTTGAGCTTCTGCTGTGGATCATGTTTCTTTCAACTGTTAGCTTGTTAGCAAGTTCTTCGTTAAACAGTTTCAAAGAAAGCTTGTTAGCAAGTTCTTAGTGGCACCTTTCTCATGTGAAATGCCAGTATATTTTTTTTCTTTTCCAAAGACACAAAGAATCTACTGCCACTTGGGGATCTTCTATTTTGTTTTTCTCTCAAGCTATATAAATAATAATGATTTGCTTTTTTTCTGAAATGGAAAACAAAACTTGCTGGAAAGAAATAATAGACGAGATGATATTCTTGTTGATCAGATCACATAAAGGACTCATTCAAATAATATATTCGGTAATAACCTAGTTATATAGCTATCTTGATTTTGGGGAAGGATGATTATGCGTAAGGTTATGAATCAGCCTCTTTGCTCTTCTGCTATCAAACTACAGAAGCTGTAGAAATGATGGAAAGACAGCCCTAAAATGGACATCTTCATCAAAAAAAAGAAAAAAGAAGACATCCCTAAAAGAGACATACCAACTCTCATGAAGTGTAGGAGTTCAGGCTTTCATAACCGGCGTTTATGGAAATACATATAATACAGTTATGATAAGACTGATAAATAGGTTTTATTTGTTCGATAAGTTTCTTTGGTTTTCTTCTAGATAAGAAAGGAAGTTACAAGGAAAAAATGTATTTTTTTTAAGCCTGGAACGTCATAGCAAATGATACTTCTCTAGTTGAGGCTGAAATTTATGTTGTCTAAAATTCATGACGAAATGGATGTGCTGAATTCAGTTGGAAGTATCTTTACATTGATCTAATAAATCAGTTCAGTTGTGTTAAAGAAATATGGAAACTAGATATTTCTTTATTCAGAGAGAGAGGGAGAAACACCTTTTAAGCTAGTTGTCAAATATTTACTTTTATGGCACAAAATCTGAAGTTCTGGTGGATCTCTATCTTGACAGCGTGTCAATTTCCCCAAAGCTCTCTGTCCAACTTCTGCAGAATAAATTAACTCAACTTTAATATCAATGAACTCCTCCCTTGATGAACAGCTCCGGGCTCTTTTCCTTCCCCAGTGGCCAGGGGTAGAAAATGGCGGGGGATGATTGAAGGGTTATTGTTTTTTCTTTTTCTATGACGATTATGTAATTCTTCTTTGTATTCTGTTGACCTGAATAATTTCAACTCTTTATTAATGTAGTATTTTGAGAATTGAGATGAAATCTGGACACAATAGAAAAAAAAGAGCACAATGTTGAGGGTGGAAGTGTTGATAGAAAATGGTGGTGGAAACCTCTTCTGTTGTAGATAGTTTTTGACCCCATATTAATGAAAAAAAGAGCACAATGTTAATGAAATGACTATTTGATTTCGGCAGAATAGTCTGGTGGACCCTCGTACTTGTATCGGACTGTATTATGGACTCTTCTACTTAGTTTTTTGTCATCTGGACCCTTATACTCAACATAAAACAATATATTATACCCCTGACCATTGATCATCCTTATGTGGCATTAATATAGATGAGTTGGCAAGAGAGTGTAGTCACACGCCTGCAAAGGCAAGTGAACATTTTTGAAATTTCAACTTTTACTTTTAAGTTATTAAAATTATTTTTTTTAAAAAAATAAATTTAAAAAGGAAAAAAACTCCATCTTCTTCCCCACACTACCTTTTTTCTAGCCATTCCAACCCCAACCTATTTTTCTTTCTTATCCACACCCTATTGTTATTTATCTTCATTTTTCTTTCACTTGTTTCTTATTTCCCCCACCCATCCCTATTTTTTCCTCTTCAATCATCACTTTCCCTCTTTTTCCCCTCCCATACTTGAATTTCTATCTTTTTGCCTTTCCTTGCTCCTTTTCAACTTCTTTCTTGTTTTCTTTTTTTTTTGTTACCCTAAATAAAAAACGAAATTGGGCAAAAAATTTTGAACATAATAAGCAAAGAAAAATCAGAAATTAGTGGAGTTGTTGATATTTCTAATTAGTAACTTGACCTCTTTTGGTGTCAAAATTATTCTGATATTTGTAAGCAATTTGGGTGTGAAATAGTAGTTAGCATTGGATTATGAAAAGTTTGGTTAAATCTGGTTGTTAGGTGGCTTGGTTGTTGTTATTGTGGTTGTTAGATGACTTAGGTTGTTGTTACTTTGATCTCGCCGGTAAAATGGCGACGCCGCCGTCAAAAATGGAGACGACGCAATGGCTCCATCATTTCTCCGACATCGACGAGATCCTCTACCTTGTTTCGACTAGTTTGTATTGCTATCCATGTCGGAAAATCGGAAATGCTATATTGGGTTTTACAATTGGATTCTAATGGGTTTTACGATGCCGGCTTGGTGGCGAAATATTGAAAATAGGGAGGATTAGAAATGTCAATAATAAATTAAAATGGCACTAGCGGGGAGTGAAGTAGTTTCATGACTTTATCAGATTGCTGGATTGTGAAAAAATCGAAGAAGAAAAAAATGGGGATATGGAGATGGTGGAGTTTTGACAGTGATGGTGGGTTAGGGAAGGTGGAAAATAATAATTTTATTTTGTTTTGATAAAATAGATTTTTTTAAATGTCTTTTATTTAATATTTTTACTAATAATTAAAAAATTATTATGAAGAAAATTATGACTTGACATTAATATATATGACATGGATATAACATGTCATCTATGTAAGGGAGAGTGAGATACACACATGGTAAGAGGGATTTAAAAATCTCATTTTGGTTAAGTTCAGGAGTCCAGATGACAAAAAAGCTAAATAGAAGAGTCCATAATACAATCCGATACAAGTACGAGGATCCACCAGACTATTTTGCCATTTGATTTCCTTCATCAAAGAAAAAAATGATACTTGATTTCACAAAAGAAGAGGAAAGAAAGAAAGAAAGAAAGAAAGAGTAGGTGTCAAGGAAACACGTTTTGTTTATTGTCAAAGAAATGAAAGAACAAGTAGATTCCCTTGTGCTCATTTACCGCACTCATTATTGTGTTACTTCTTCTTTAGCTGCACCAATGACCTCTTTGACCAATATCCAAAGCTTGATGAGCTACTTCTTTTTTCCCAGCGATAGTTTAACTATGGGAGCTGGTGCCTTAATTTTCTGTTAATGTGCATTATTGTACAAATAGGCGCTGTTTGTACTGGAGATTATCTAATTTTTTGCGCTTTTGATGATACTTGCAGTTTCCACTGCTACGACCCGGGGAGGAAGAATTTGTCTATCAGAGTTGCTCATCTCAACAAGATTCACCAGGCTCGATTGAAGGATCTTTTACTTTTGTACCTGGAAGGTATGTCACATCACTGCAATTGGTACACCATCAAAATGACATTCTATTGGTTGTTCCCTTGTTAATGAGTCATTACTCCTTCACATGCACCCTAGTATGGATGGTAATTGCACTTTCATGTATATACCCTTTTTACCTGGCCAACCTGTAGATCCTAATCCGACAGATTCTTATTTTGATCCTGAAATGATACAATGGTTATGCACTCTTACTAGGACTTTTAGCTTCATAGAAGACATTTCTTGAATCCCCACCACCCACCTTCTCAAAAGAAGGCATCAGTGATCTAGTCGAATACCAACTTCAAGTATGTGTCCTTGGAGTGACATGATTTTACCTGAATAATCAGGTGAGCATTTTCTAGCCTATTAAGTTGTAGGGCAAAGTCGGTTGGTGTGTTCGAGCAGAACAGACCATATAGATTCAGTCATCCAATTGTTATATTTTATAACAGAAGAAAATAAGTAAATTTGGCCATGTGTTTTTTCATTTGATTGAAGGCAATACTCAGATTTGAACTAGGAAATTAGGAATTAGGATCTGCTTTTCATTCTAATGCTTCTTGCAGAATTCTTGTATTGGGCTGGTTGGTGTTAAGCCTCATCCGCTGTGGTCTGCCTGCTGGATACTTCTGTTTCTGCCTCTATTATATTTTAAGAATGGTTGTTTTATAATAAGATTTTCCTCTTCGATAAATGATTAGCATGGTCCCTTATCAAGGATGACATGCACAAATTGAGATCTGGTTCATATCTCTGTTGATTATGAAAAAAATTTCATTTCAGTAAAGGATTCATTTACTCTCACAAACTAAGTTTGGAGAAGAACTTGATATTTCAGAGCCTAACATGTTTTACAAAAGCTTTCGCAATGTGATAGTAGTGCACTTTATTGAAGCTGGACCATAGTAACCTTCAAATTGTACGAAATCCTTTCTGCAGTGAGAATCTGAAAGACTGAAACCTCCAATGCTGTATCCTTGGTCCAGAGGATTCTACTTTTGCCTTTTCATTTTTATCCTTTCATAGTGAAATTTGTGTTTGTTATCACTTTATGGTTCTCTTTACAAAATTTAATTGGTTGTTACTTTGTGATGGCTTTTTTCCTTTTTGTATATAGAGCAGTTTACATATTTGAAAGAGTTGGGGTTACTTTTTTCTTGGCTGATACTTAGAACCTTACTGTATGTTCCCTTTTTCCTCAGATTAGCAGATCCAAAAGGTAGTCCGTTCGAAGCTGTGGTGTCAAGATTTCCCCTTGTGATGCCGGACTATATTTTCTGATGGAACTCATTCGAAGTCCACTCTTCTGTGTTATGCGGTTGGTTTTGTAGTGAACAAGCACTATCTTTACTCCTGTTAGTCTATGTGTGATTTTCATCCATCCTCCCTTCCTGTTGTGCTTCATTGGTTTACTATTATGTTCTTTTCCTTTGAGAAGAAAGTTCTTTGAACTCCGGCCAACGTAGTACTGTCTTGTAGAAAAGGATATACAACATGTAATACCAAACTTCGCGTTGTGTCGAA</genome_strand>
        <mrna_strand>CTGTTACAAATGGTGTAAAG...........................................................................................................GTCCGTGCTTCTTCTGTGTTCGTCCCAGAGTTCAGTACCATTCAAGATGAATATGAGAAGAGTTTTTTTGCTTATTCTATCCGCATGTCTCTTTCACCTGAAGGATGCATAATGAATGGGATGGCCTTCAATTCCTGCCAACTATATTGTAGACATTGGATCATCCGCTGCAATGATAATGTTGTAGATAATGTAAATGGAGAAGCGGTGATAGGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCACTGCTACGACCCGGGGAGGAAGAATTTGTCTATCAGAGTTGCTCATCTCAACAAGATTCACCAGGCTCGATTGAAGGATCTTTTACTTTTGTACCTGGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGCAGATCCAAAAGGTAGTCCGTTCGAAGCTGTGGTGTCAAGATTTCCCCTTGTGATGCCGGACTATATTTTCTGATGGAACTCATTCGAAGTCCACTCTTCTGTGTTATGCGGTTGGTTTTGTAGTGAACAAGCACTATCTTTACTCCTGTTAGTCTATGTGTGATTTTCATCCATCCTCCCTTCCTGTTGTGCTTCATTGGTTTACTATTATGTTCTTTTCCTTTGAGAAGAAAGTTCTTTGAACTCCGGCCAACGTAGTACTGTCTTGTAGAAAAGGATATACAACATGTAATACCAAACTTCGCGTTGTGTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323558" ref_strand="+" ref_description="SGN-U323558        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains similarity to F-box protein FBX3 GI:6103643 from (Homo sapiens) ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 | chr1:1853076-1855021 REVERSE | Aliases: T21E18.16, T21E18_16(evalue: 3e-62, score=235) genbank/nr: gi|18390613|ref|NP_563759.1| F-box protein family [Arabidopsis thaliana] gi|25373377|pir||D86196 hypothetical protein [imported] - Arabidopsis thaliana gi|8810473|gb|AAF80134.1| Contains similarity to a F-box protein FBA from Mus musculus gb|AF233226.  ESTs gb|AV536237, gb|AV541425, gb|AV542477, gb|AV543534, gb|AV536862, gb|AI100662, gb|Z27285, gb|Z29939, gb|T21404, gb|T44511, gb|H37689 come from this gene. [Arabidopsis thaliana] gi|16930491|gb|AAL31931.1| At1g06110/T21E18_13 [Arabidopsis thaliana] gi|20466211|gb|AAM20423.1| unknown protein [Arabidopsis thaliana] gi|25084008|gb|AAN72153.1| unknown protein [Arabidopsis thaliana](evalue: 2e-60, score=235)">
      <seq>aaaccaacttctctcttctctttcatcttaactcactttggcgtttctgtaatctccggcggccggcggtagacggcggaggaagagaaaagatggatgtagaaaggttaggtgggctgtcgatgcatataatcttatcgaaattgacgcctcaagatgctgcatctgtggcttgtgttagcaaaaggtttaggaattggagctccgatgatttgctatggtccaaattctgtgctgatgatcttgatttatcttctccaattgacccacttggaaatcctatgccgtctttcaaggcatcttatcaaacatggcgggaggatttcaatcaatacccatggcccttggttactcgcgttaaaagatgttgggacagactaaaagcgtggctagccataaatttccctgaaggtttgtctacattgcgtaaaggtgcatctgaggaagaaatactggagttggagaagagtttgaaagtaaaactgcctctacctactagggttctctaccggttctatgatggtcaagaactatcaagtgaggagtccagtgggagcgcgcctgggagtttattaggtctcatgggaggttactccttttatgaccatctggtgaatgtatctttgttgcctttacatcaaatgataatagaaacgaaagaaactatcagacatatcggactcggcaatcgatctaagtatgttgttgtagcggcctcttgtggtcacaatgaaaaggttttctttctgaactgttccactggtcaacttaatgttggtacaaggaatctcacaactgaaggagaagtgattccttgtgtaccgagtgccttgataagttcagtgcataatgtaaaagcaactcaaccccaagatgccatgctattgtggctagaggaacatgtccgtcgcttgcaacatggaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0047K24-zhfG6/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0047K24.1" temp_strand="-" temp_description="C06SLm0047K24.1  AC216662.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0047K24 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84675" stop="82320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84375" g_stop="84080" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84079" i_stop="83250" i_length="830">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="83249" g_stop="82620" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="926" r_length="630" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0047K24.1" gen_strand="-" ref_id="SGN-U323558" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>926</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0047K24.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84375" e_stop="84080"/>
          <exon e_start="83249" e_stop="82620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCAGTTCCTCTCTTCTCTTTCATCTTAACTCACTTTGGCGTTTCTATTATCTCCGGCGGCCGGCGGTAGACGGCGGAGGAAGAGAAAAGATGGATGTAGAAAGGTTAGGTGGGCTGTCGATGCATATAATCTTATCAAAATTGACGCCTCAAGATGCTGCATCTGTGGCTTGTGTTAGCAAAAGGTTTAGGAATTGGAGCTCCGATGATTTGCTATGGTCCAAATTCTGTGCCGATGATCTTGATTTATCTTCTCCAATTGACCCACTTGGAAATCCTATGCCGTCTTTCAAGGTATAGATAGCTACTCATAACTCAATTTATGCATTTCACTGAGGTTTTAGTCGAAAGTACTTTTTTTTCGTCCTAAAATAAATGAGGGTTGAAAAATGTGATTTTTTGGTATGCGAATGTAGACATTTCTTAAATTTATTACTTTGAATTTGAAATTAGGATTTTTTTTTAACTGGGTGTTCTGCCTGTGTCAGAGCAAAATCTGAAGAAGTAAGTATAGGAACTAGCCGAAGAAGCTTAGACATCTACTATATATACAAATAAAAAATAAAAAAATTAGTTATAAATAATATGATTTTCCGCCAAAGGGGGAGTTCGGGTGAACCCCTGACCCTAGGACCTAGGCTGGCTCTGCGCCCTGGTTTGGGCCATCTTGCTTGCCTACAGAGGATACCTCCCACTACCAACTGGTAGTACCAGCTAACTCTCTTCACCAAGTCTAGAAGAGATAGAAGAAATCACCTAGTGTTTTGTCTTGTGTTAGGATTTGATCTAAGACCTCATGACGCTTAACCGTTGGATTCTTTTTGGAACTAGAAATGTAAAGGAAATTTGTGAAAAGTGATAATTTATATTCTGATTGACTCATCAGATGGTGATAGGGTTGTATATGCAGCGTGTAAAGAATTGCAAGTGATTGTAGCATTCTTGAGCTAATAATATGCTTGTACTAGAGTAGCTTTTATTAACAAACAAACCCAAAATAAGAAAGAAGAAACAAATAAGAAAAGTAAGTCATTGTATATGCAATGATCATGTGAATATGCACCATTAGTGTGCATTACTGAAACACTCTCTGACATCTTGGCATGTTTATGTTGTTTGCTTAGGCATCTTATCAAACATGGCGGGAGGATTTCAATCAATACCCATGGCCATTGATTACTCGCGTTAAAAGATGTTGGGACAGGCTAAAAGAGTGGCTAGCCATAAATTTCCCTGAAGGTTTGTCTACATTGCGTAAAGGTGCATCTGAGGAAGAAATACTGGAGTTGGAGAAGAGTTTGAAAGTAAAACTGCCTCTACCTACTAGGGTTCTCTACCGGTTTTATGATGGTCAAGAACTATCAAGTGAGGAGTCCAGTGGGAGCGCGCCTGGGAGTTTATTAGGTCTCATGGGAGGTTACTCCTTTTATGACCATCTGGTGAATGTATCTTTGTTGCCTTTACATCAAATGATAATAGAAACGAAAGAAACTATCAGACATATCGGACTCGGCAATCGATCTAAGTATGTTGTTGTAGCGGCCTCTTGTGGTCACAATGAAAAGGTTTTCTTTCTGAACTGTTCCACTGGTCAACTTAATGTTGGTACAAGGAATCTCACAACTGAAGGAGAAGTGATTCCTTGTGTACCGAGTGCCTTGATAAGTTCAGTGCATAATGTAAAAGCAACTCAACCCCAAGATGCCATGCTATTGTGGCTAGAGGAACATGTCCGTCGCTTGCAACATGGAATG</genome_strand>
        <mrna_strand>AAACCAACTTCTCTCTTCTCTTTCATCTTAACTCACTTTGGCGTTTCTGTAATCTCCGGCGGCCGGCGGTAGACGGCGGAGGAAGAGAAAAGATGGATGTAGAAAGGTTAGGTGGGCTGTCGATGCATATAATCTTATCGAAATTGACGCCTCAAGATGCTGCATCTGTGGCTTGTGTTAGCAAAAGGTTTAGGAATTGGAGCTCCGATGATTTGCTATGGTCCAAATTCTGTGCTGATGATCTTGATTTATCTTCTCCAATTGACCCACTTGGAAATCCTATGCCGTCTTTCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCTTATCAAACATGGCGGGAGGATTTCAATCAATACCCATGGCCCTTGGTTACTCGCGTTAAAAGATGTTGGGACAGACTAAAAGCGTGGCTAGCCATAAATTTCCCTGAAGGTTTGTCTACATTGCGTAAAGGTGCATCTGAGGAAGAAATACTGGAGTTGGAGAAGAGTTTGAAAGTAAAACTGCCTCTACCTACTAGGGTTCTCTACCGGTTCTATGATGGTCAAGAACTATCAAGTGAGGAGTCCAGTGGGAGCGCGCCTGGGAGTTTATTAGGTCTCATGGGAGGTTACTCCTTTTATGACCATCTGGTGAATGTATCTTTGTTGCCTTTACATCAAATGATAATAGAAACGAAAGAAACTATCAGACATATCGGACTCGGCAATCGATCTAAGTATGTTGTTGTAGCGGCCTCTTGTGGTCACAATGAAAAGGTTTTCTTTCTGAACTGTTCCACTGGTCAACTTAATGTTGGTACAAGGAATCTCACAACTGAAGGAGAAGTGATTCCTTGTGTACCGAGTGCCTTGATAAGTTCAGTGCATAATGTAAAAGCAACTCAACCCCAAGATGCCATGCTATTGTGGCTAGAGGAACATGTCCGTCGCTTGCAACATGGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="7362" PGL_stop="12701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7362" e_stop="7834"/>
            <exon e_start="8954" e_stop="9103"/>
            <exon e_start="11706" e_stop="12020"/>
            <exon e_start="12151" e_stop="12701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.844" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="7362" e_stop="7834" e_length="473"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7835" i_stop="8953" i_length="1119"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8954" e_stop="9103" e_length="150"/>
          </exon>
          <intron i_serial="2" don_prob="0.844" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9104" i_stop="11705" i_length="2602"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11706" e_stop="12020" e_length="315"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="12021" i_stop="12150" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="0.984">
            <gDNA_exon_boundary e_start="12151" e_stop="12701" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7362" stop="7834"/>
              <exon start="8954" stop="9103"/>
              <exon start="11706" stop="12020"/>
              <exon start="12151" stop="12701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319391" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTACAGTAGGGTTTATGCTTGTTGCTCCTCACCTTCCTCCTCCTTGTGGCTAAACACAAAGAGAAGAAGAAGACGCTAGAGGAACAAAACCCTAGCGAAGTAGAAGGCAAAATGGGCGAATCGATTAAGAAGAAGTCGAAGAAGAAGAAGAAGGAGACGCATACTGTGACAATGGAAACCATCGCTGAAAATCCTAATAATATTTCTCCGATGGTTGGTTATTTTCCATCAGGTTATGACCCTTTAAGGAACACAAATGACGGTGTGGAGGAATTGAGTACTAAGTTGTATAGGAATGTTAGAAGGAATAATCGGTTACAGGTTGTGGTGAGCCCTTATGGGTCGCAGGTCGATTTTGTTGGGACTAATTATTCTGGCGAGGCGACGTCTGCTCAGTTGTGTACTTATTCGCTTGGGATACTGGATAAGGAAACTCAAACTCTCAAGATTGTTCCTATTGCAGCTAACAAG : ATAATTAGGTTGGAACCTAGAGTTAGAGGGTCAGAAGTACCGGATGCTGAAGATCCAGATACTGCCAAGCAAGAACTCACTGCAGAAGAGAGGAATGACAAAATGAGAGAGTTAACTCAAATGTACTCATCAAAGAAGTCTATACGGCAG : GCTAGGAAGCTTGATTCCCTGCGTCAACAAGAAGATACTGGAAATCAAGAGGAATTTGACAGGAATATAGCTGGAGCAATAAATAAAGAGGCTCTTGAAGTAACTGTTGCAACAGACAGTGCTCGGAATATACCACCACATGATCTAGATGCCACAATACCCCAGTTGGCATATCCACTAGACAGAATTATTTCCAAAGGAGAGTGGGATTTTCTTTTGGATATTTTTGAACTCACGGAAGCTGGAGCAGAAATGACACCTGATCTTTATCCAAGCTTTGTTCGCAACAGATCCTACAAATTGGAACATATACAG : GATGAAGATGAGAAGAAAAGGCTGGCAGGCATACTTTCATTCATTACTCATCTTGTTAAGTTCAAGGATAAACATTCTATGGATGGTGTATCATCGGCAAAGCATCACAAGTTTCCTGGCATCTTGTCCCAGAAGTTCACTTCAATGTTTTCCATTTCAGATTCAAAAAGGCTGCCGGAAGAGAAAGTAACTCTTCTTATCAACTATGTGTTGGTTCTTACTCTCTTTGCTGATGACTTTCGTAGTGATCCATCTGATATAGCCAAAGATTTGAGAATTAATGCTGTAGCACTGCGGCCTTTCTATGAGTACTTAGGTTGCAAGCTTGTTCGTGAGAAAAACATTGTGTTGGCTACACTTCCTGTTCCGCTTGTATTTCCAGGTGTAAGGAGGAAGAGAAGAAGGTAGATTTGGTTTTAACAGGTAACCCTCAGACATTGAGAGCCCATGAACTACCAGCATTCTCTGTTGTCAGTTTTGTCATATTTTTTTGCCATCAATTTTGAATATCTATGAACTGAAAGTTGAAAACTTGAATTTTGATATGAAAA</gDNA_template>
            <first_frame> Y  Y  S  R  V  Y  A  C  C  S  S  P  S  S  S  L  W  L  N  T  K  R  R  R  R  R  *  R  N  K  T  L  A  K  *  K  A  K  W  A  N  R  L  R  R  S  R  R  R  R  R  R  R  R  I  L  *  Q  W  K  P  S  L  K  I  L  I  I  F  L  R  W  L  V  I  F  H  Q  V  M  T  L  *  G  T  Q  M  T  V  W  R  N  *  V  L  S  C  I  G  M  L  E  G  I  I  G  Y  R  L  W  *  A  L  M  G  R  R  S  I  L  L  G  L  I  I  L  A  R  R  R  L  L  S  C  V  L  I  R  L  G  Y  W  I  R  K  L  K  L  S  R  L  F  L  L  Q  L  T  R :   *  L  G  W  N  L  E  L  E  G  Q  K  Y  R  M  L  K  I  Q  I  L  P  S  K  N  S  L  Q  K  R  G  M  T  K  *  E  S  *  L  K  C  T  H  Q  R  S  L  Y  G  R :   L  G  S  L  I  P  C  V  N  K  K  I  L  E  I  K  R  N  L  T  G  I  *  L  E  Q  *  I  K  R  L  L  K  *  L  L  Q  Q  T  V  L  G  I  Y  H  H  M  I  *  M  P  Q  Y  P  S  W  H  I  H  *  T  E  L  F  P  K  E  S  G  I  F  F  W  I  F  L  N  S  R  K  L  E  Q  K  *  H  L  I  F  I  Q  A  L  F  A  T  D  P  T  N  W  N  I  Y  R :   M  K  M  R  R  K  G  W  Q  A  Y  F  H  S  L  L  I  L  L  S  S  R  I  N  I  L  W  M  V  Y  H  R  Q  S  I  T  S  F  L  A  S  C  P  R  S  S  L  Q  C  F  P  F  Q  I  Q  K  G  C  R  K  R  K  *  L  F  L  S  T  M  C  W  F  L  L  S  L  L  M  T  F  V  V  I  H  L  I  *  P  K  I  *  E  L  M  L  *  H  C  G  L  S  M  S  T  *  V  A  S  L  F  V  R  K  T  L  C  W  L  H  F  L  F  R  L  Y  F  Q  V  *  G  G  R  E  E  G  R  F  G  F  N  R  *  P  S  D  I  E  S  P  *  T  T  S  I  L  C  C  Q  F  C  H  I  F  L  P  S  I  L  N  I  Y  E  L  K  V  E  N  L  N  F  D  M  K  </first_frame>
            <second_frame>  I  T  V  G  F  M  L  V  A  P  H  L  P  P  P  C  G  *  T  Q  R  E  E  E  D  A  R  G  T  K  P  *  R  S  R  R  Q  N  G  R  I  D  *  E  E  V  E  E  E  E  E  G  D  A  Y  C  D  N  G  N  H  R  *  K  S  *  *  Y  F  S  D  G  W  L  F  S  I  R  L  *  P  F  K  E  H  K  *  R  C  G  G  I  E  Y  *  V  V  *  E  C  *  K  E  *  S  V  T  G  C  G  E  P  L  W  V  A  G  R  F  C  W  D  *  L  F  W  R  G  D  V  C  S  V  V  Y  L  F  A  W  D  T  G  *  G  N  S  N  S  Q  D  C  S  Y  C  S  *  Q   : D  N  *  V  G  T  *  S  *  R  V  R  S  T  G  C  *  R  S  R  Y  C  Q  A  R  T  H  C  R  R  E  E  *  Q  N  E  R  V  N  S  N  V  L  I  K  E  V  Y  T  A   : G  *  E  A  *  F  P  A  S  T  R  R  Y  W  K  S  R  G  I  *  Q  E  Y  S  W  S  N  K  *  R  G  S  *  S  N  C  C  N  R  Q  C  S  E  Y  T  T  T  *  S  R  C  H  N  T  P  V  G  I  S  T  R  Q  N  Y  F  Q  R  R  V  G  F  S  F  G  Y  F  *  T  H  G  S  W  S  R  N  D  T  *  S  L  S  K  L  C  S  Q  Q  I  L  Q  I  G  T  Y  T   : G  *  R  *  E  E  K  A  G  R  H  T  F  I  H  Y  S  S  C  *  V  Q  G  *  T  F  Y  G  W  C  I  I  G  K  A  S  Q  V  S  W  H  L  V  P  E  V  H  F  N  V  F  H  F  R  F  K  K  A  A  G  R  E  S  N  S  S  Y  Q  L  C  V  G  S  Y  S  L  C  *  *  L  S  *  *  S  I  *  Y  S  Q  R  F  E  N  *  C  C  S  T  A  A  F  L  *  V  L  R  L  Q  A  C  S  *  E  K  H  C  V  G  Y  T  S  C  S  A  C  I  S  R  C  K  E  E  E  K  K  V  D  L  V  L  T  G  N  P  Q  T  L  R  A  H  E  L  P  A  F  S  V  V  S  F  V  I  F  F  C  H  Q  F  *  I  S  M  N  *  K  L  K  T  *  I  L  I  *  K </second_frame>
            <third_frame>   L  Q  *  G  L  C  L  L  L  L  T  F  L  L  L  V  A  K  H  K  E  K  K  K  T  L  E  E  Q  N  P  S  E  V  E  G  K  M  G  E  S  I  K  K  K  S  K  K  K  K  K  E  T  H  T  V  T  M  E  T  I  A  E  N  P  N  N  I  S  P  M  V  G  Y  F  P  S  G  Y  D  P  L  R  N  T  N  D  G  V  E  E  L  S  T  K  L  Y  R  N  V  R  R  N  N  R  L  Q  V  V  V  S  P  Y  G  S  Q  V  D  F  V  G  T  N  Y  S  G  E  A  T  S  A  Q  L  C  T  Y  S  L  G  I  L  D  K  E  T  Q  T  L  K  I  V  P  I  A  A  N  K  :  I  I  R  L  E  P  R  V  R  G  S  E  V  P  D  A  E  D  P  D  T  A  K  Q  E  L  T  A  E  E  R  N  D  K  M  R  E  L  T  Q  M  Y  S  S  K  K  S  I  R  Q  :  A  R  K  L  D  S  L  R  Q  Q  E  D  T  G  N  Q  E  E  F  D  R  N  I  A  G  A  I  N  K  E  A  L  E  V  T  V  A  T  D  S  A  R  N  I  P  P  H  D  L  D  A  T  I  P  Q  L  A  Y  P  L  D  R  I  I  S  K  G  E  W  D  F  L  L  D  I  F  E  L  T  E  A  G  A  E  M  T  P  D  L  Y  P  S  F  V  R  N  R  S  Y  K  L  E  H  I  Q  :  D  E  D  E  K  K  R  L  A  G  I  L  S  F  I  T  H  L  V  K  F  K  D  K  H  S  M  D  G  V  S  S  A  K  H  H  K  F  P  G  I  L  S  Q  K  F  T  S  M  F  S  I  S  D  S  K  R  L  P  E  E  K  V  T  L  L  I  N  Y  V  L  V  L  T  L  F  A  D  D  F  R  S  D  P  S  D  I  A  K  D  L  R  I  N  A  V  A  L  R  P  F  Y  E  Y  L  G  C  K  L  V  R  E  K  N  I  V  L  A  T  L  P  V  P  L  V  F  P  G  V  R  R  K  R  R  R  *  I  W  F  *  Q  V  T  L  R  H  *  E  P  M  N  Y  Q  H  S  L  L  S  V  L  S  Y  F  F  A  I  N  F  E  Y  L  *  T  E  S  *  K  L  E  F  *  Y  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7373" stop="7834"/>
                    <exon start="8954" stop="9103"/>
                    <exon start="11706" stop="12020"/>
                    <exon start="12151" stop="12558"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1332</number_coding_nucleotides>
                  <number_encoded_amino_acids>444</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLCLLLLTFLLLVAKHKEKKKTLEEQNPSEVEGKMGESIKKKSKKKKKETHTVTMETIAENPNNISPMVGYFPSGYDPLRNTNDGVEELSTKLYRNVRRNNRLQVVVSPYGSQVDFVGTNYSGEATSAQLCTYSLGILDKETQTLKIVPIAANKIIRLEPRVRGSEVPDAEDPDTAKQELTAEERNDKMRELTQMYSSKKSIRQARKLDSLRQQEDTGNQEEFDRNIAGAINKEALEVTVATDSARNIPPHDLDATIPQLAYPLDRIISKGEWDFLLDIFELTEAGAEMTPDLYPSFVRNRSYKLEHIQDEDEKKRLAGILSFITHLVKFKDKHSMDGVSSAKHHKFPGILSQKFTSMFSISDSKRLPEEKVTLLINYVLVLTLFADDFRSDPSDIAKDLRINAVALRPFYEYLGCKLVREKNIVLATLPVPLVFPGVRRKRRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14645" PGL_stop="21019"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14645" e_stop="14816"/>
            <exon e_start="14931" e_stop="15479"/>
            <exon e_start="16091" e_stop="16201"/>
            <exon e_start="16294" e_stop="16338"/>
            <exon e_start="16452" e_stop="16524"/>
            <exon e_start="16619" e_stop="16731"/>
            <exon e_start="16844" e_stop="16903"/>
            <exon e_start="16985" e_stop="17032"/>
            <exon e_start="17120" e_stop="17188"/>
            <exon e_start="20518" e_stop="20579"/>
            <exon e_start="20657" e_stop="21019"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.099" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.098" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.760" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.505" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.931" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.944" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14645" e_stop="14816" e_length="172"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.996">
            <gDNA_intron_boundary i_start="14817" i_stop="14930" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14931" e_stop="15479" e_length="549"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.099">
            <gDNA_intron_boundary i_start="15480" i_stop="16090" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16091" e_stop="16201" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="16202" i_stop="16293" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16294" e_stop="16338" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.950" acc_prob="0.098">
            <gDNA_intron_boundary i_start="16339" i_stop="16451" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16452" e_stop="16524" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.982" acc_prob="0.994">
            <gDNA_intron_boundary i_start="16525" i_stop="16618" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16619" e_stop="16731" e_length="113"/>
          </exon>
          <intron i_serial="6" don_prob="0.760" acc_prob="0.000">
            <gDNA_intron_boundary i_start="16732" i_stop="16843" i_length="112"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="16844" e_stop="16903" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.505" acc_prob="0.954">
            <gDNA_intron_boundary i_start="16904" i_stop="16984" i_length="81"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16985" e_stop="17032" e_length="48"/>
          </exon>
          <intron i_serial="8" don_prob="0.931" acc_prob="0.992">
            <gDNA_intron_boundary i_start="17033" i_stop="17119" i_length="87"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="17120" e_stop="17188" e_length="69"/>
          </exon>
          <intron i_serial="9" don_prob="0.979" acc_prob="0.999">
            <gDNA_intron_boundary i_start="17189" i_stop="20517" i_length="3329"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="20518" e_stop="20579" e_length="62"/>
          </exon>
          <intron i_serial="10" don_prob="0.944" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20580" i_stop="20656" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="0.983">
            <gDNA_exon_boundary e_start="20657" e_stop="21019" e_length="363"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14645" stop="14816"/>
              <exon start="14931" stop="15479"/>
              <exon start="16091" stop="16201"/>
              <exon start="16294" stop="16338"/>
              <exon start="16452" stop="16524"/>
              <exon start="16619" stop="16731"/>
              <exon start="16844" stop="16903"/>
              <exon start="16985" stop="17032"/>
              <exon start="17120" stop="17188"/>
              <exon start="20518" stop="20579"/>
              <exon start="20657" stop="21019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCTTGTCTCTCTCTGCAGAATCAGTAAAAACAATACACTACAACACTCCAAACAGAGAAACAAAGAATCCCTTTCTTGTTTTGTTCATAGCTTTTTTGATTTTTCATTTTGTAGCTGATGATGCTCTGTTTTTTGTAGTAGCAAAAATGGTTGTCATTTAGAGAGTATCAG : AATACCAAAAAGGGTAGGAGGAGAAGAGAAAAAGGAGCGTTCTTTGTTATAATCATGGCTGTGGTTGAGAATGCTGCTATTAACGTTGTTGTTTCATCGAATCCCAGAAGAATTGTACAGAAGGATGTTGTTGTTGATCATCAGTCAGTGAAAACGAAACAGAACAATGATGTGCAGAGGTCGAAGGTTTCCAGCGATCAGAATTTTGAAATTATGTCTGTTAATCAGCAGGAGCAGGAAGAACCCCAGAAGGAGAATGGAATTCAGCAGAAAGAGGAAAGCGTGAATGGTAATGGAGTATTGGATAGTCATAGTATTCAGCATCAGAAAATGAACGGTGTTGATGGTGGTGATGAAGGGTTTAAGAAGGAGATGAGGGATTTGGAGGAAATGCTTTCCAAATTGAATCCCATGGCTGAAGAGTTTGTGCCTCTTTCAATGGCTAACAACAACATGCTAGTGCCATATACACCCGGCGCAGTGTATTTTGGCTTTGATGCTAACAATTTTCTAATGCAGACTGAGGCCAATGGAAATTCCAACAGAAGG : AAGAAAAATGGCTACGGTCATGGAAGGAGAAGGATGAATACCCGAACAGGCATGGCCCAAAGGGAAGATGTTATAAGGAGGACGGTTTATGTATCCGACATTGATCATCAG : GTGACTGAAGAGCAGCTCGCATCACTTTTTCTTGATTGCGGACAG : GTTGTTGACTGTCGTATATGTGGTGACACCAATTCTGTACTTCGATTCGCCTTTATTGAGTTTACAGATGAAG : AAGGTGCAAAGAGTGCTCTGAGTCTTGCAGGAACTATCCTTGGGGGTTATCCTGTGAGAGTGCTTCCTTCTAAAACTGCGATTGCACCGGTTAATCCAACCTTTCTTCCTAGG : TCTGAAGATGAAAGAGAGATGTGTGCTAGAACTGTGTACTGTACAAATATTGATAAGAAG : ATTACTCAAGCAGATGTCAAGCTGTTTTTTGAGTCCTTATGTGGAGAG : GTTCATCGCTTGAGGTTGCTTGGTGACTATCATCATTCGACTCGTATCGCTTTTGTTGAGTTTGTCATG : GCAGAGAGCGCAATTATAGCACTGAACTGCAGTGGTGCATTCCTGGGATCACTTCCCATAAG : GGTAAGCCCATCAAAGACTCCTGTGCGTCCGCGTTTTACTCGTTAAGCAGTGCTCTGATCAATCACTGTGGCATTGCTTTTCAGTTGGTCTTTTGCTTATAAGCATATCTAAATATATACTACATATAGTATTAGAGTACTTTTCTGGCATTTTTCATTTAGTTTTCAGTACTAAATCTCTGCTGAGAATCTCTAATTCGCGGGGTACTAGTTATCAAGCTTATAGAGTTGGGCTGGTTTATAGTAGATTTATTAATTTAAGTTGGTGTATTATGTTTCTATAGACACTGCCTGAGTACCAAAACTAGATGGATGTTCTTAATTTACAGTTATATTTATCAGTAACTTTGTTGAAATTCGATG</gDNA_template>
            <first_frame> I  L  S  L  S  A  E  S  V  K  T  I  H  Y  N  T  P  N  R  E  T  K  N  P  F  L  V  L  F  I  A  F  L  I  F  H  F  V  A  D  D  A  L  F  F  V  V  A  K  M  V  V  I  *  R  V  S   : E  Y  Q  K  G  *  E  E  K  R  K  R  S  V  L  C  Y  N  H  G  C  G  *  E  C  C  Y  *  R  C  C  F  I  E  S  Q  K  N  C  T  E  G  C  C  C  *  S  S  V  S  E  N  E  T  E  Q  *  C  A  E  V  E  G  F  Q  R  S  E  F  *  N  Y  V  C  *  S  A  G  A  G  R  T  P  E  G  E  W  N  S  A  E  R  G  K  R  E  W  *  W  S  I  G  *  S  *  Y  S  A  S  E  N  E  R  C  *  W  W  *  *  R  V  *  E  G  D  E  G  F  G  G  N  A  F  Q  I  E  S  H  G  *  R  V  C  A  S  F  N  G  *  Q  Q  H  A  S  A  I  Y  T  R  R  S  V  F  W  L  *  C  *  Q  F  S  N  A  D  *  G  Q  W  K  F  Q  Q  K   : E  E  K  W  L  R  S  W  K  E  K  D  E  Y  P  N  R  H  G  P  K  G  R  C  Y  K  E  D  G  L  C  I  R  H  *  S  S   : G  D  *  R  A  A  R  I  T  F  S  *  L  R  T   : G  C  *  L  S  Y  M  W  *  H  Q  F  C  T  S  I  R  L  Y  *  V  Y  R  *  R :   R  C  K  E  C  S  E  S  C  R  N  Y  P  W  G  L  S  C  E  S  A  S  F  *  N  C  D  C  T  G  *  S  N  L  S  S  *   : V  *  R  *  K  R  D  V  C  *  N  C  V  L  Y  K  Y  *  *  E   : D  Y  S  S  R  C  Q  A  V  F  *  V  L  M  W  R   : G  S  S  L  E  V  A  W  *  L  S  S  F  D  S  Y  R  F  C  *  V  C  H   : G  R  E  R  N  Y  S  T  E  L  Q  W  C  I  P  G  I  T  S  H  K  :  G  K  P  I  K  D  S  C  A  S  A  F  Y  S  L  S  S  A  L  I  N  H  C  G  I  A  F  Q  L  V  F  C  L  *  A  Y  L  N  I  Y  Y  I  *  Y  *  S  T  F  L  A  F  F  I  *  F  S  V  L  N  L  C  *  E  S  L  I  R  G  V  L  V  I  K  L  I  E  L  G  W  F  I  V  D  L  L  I  *  V  G  V  L  C  F  Y  R  H  C  L  S  T  K  T  R  W  M  F  L  I  Y  S  Y  I  Y  Q  *  L  C  *  N  S  M </first_frame>
            <second_frame>  S  C  L  S  L  Q  N  Q  *  K  Q  Y  T  T  T  L  Q  T  E  K  Q  R  I  P  F  L  F  C  S  *  L  F  *  F  F  I  L  *  L  M  M  L  C  F  L  *  *  Q  K  W  L  S  F  R  E  Y  Q  :  N  T  K  K  G  R  R  R  R  E  K  G  A  F  F  V  I  I  M  A  V  V  E  N  A  A  I  N  V  V  V  S  S  N  P  R  R  I  V  Q  K  D  V  V  V  D  H  Q  S  V  K  T  K  Q  N  N  D  V  Q  R  S  K  V  S  S  D  Q  N  F  E  I  M  S  V  N  Q  Q  E  Q  E  E  P  Q  K  E  N  G  I  Q  Q  K  E  E  S  V  N  G  N  G  V  L  D  S  H  S  I  Q  H  Q  K  M  N  G  V  D  G  G  D  E  G  F  K  K  E  M  R  D  L  E  E  M  L  S  K  L  N  P  M  A  E  E  F  V  P  L  S  M  A  N  N  N  M  L  V  P  Y  T  P  G  A  V  Y  F  G  F  D  A  N  N  F  L  M  Q  T  E  A  N  G  N  S  N  R  R  :  K  K  N  G  Y  G  H  G  R  R  R  M  N  T  R  T  G  M  A  Q  R  E  D  V  I  R  R  T  V  Y  V  S  D  I  D  H  Q  :  V  T  E  E  Q  L  A  S  L  F  L  D  C  G  Q  :  V  V  D  C  R  I  C  G  D  T  N  S  V  L  R  F  A  F  I  E  F  T  D  E   : E  G  A  K  S  A  L  S  L  A  G  T  I  L  G  G  Y  P  V  R  V  L  P  S  K  T  A  I  A  P  V  N  P  T  F  L  P  R  :  S  E  D  E  R  E  M  C  A  R  T  V  Y  C  T  N  I  D  K  K  :  I  T  Q  A  D  V  K  L  F  F  E  S  L  C  G  E  :  V  H  R  L  R  L  L  G  D  Y  H  H  S  T  R  I  A  F  V  E  F  V  M  :  A  E  S  A  I  I  A  L  N  C  S  G  A  F  L  G  S  L  P  I  R :   V  S  P  S  K  T  P  V  R  P  R  F  T  R  *  A  V  L  *  S  I  T  V  A  L  L  F  S  W  S  F  A  Y  K  H  I  *  I  Y  T  T  Y  S  I  R  V  L  F  W  H  F  S  F  S  F  Q  Y  *  I  S  A  E  N  L  *  F  A  G  Y  *  L  S  S  L  *  S  W  A  G  L  *  *  I  Y  *  F  K  L  V  Y  Y  V  S  I  D  T  A  *  V  P  K  L  D  G  C  S  *  F  T  V  I  F  I  S  N  F  V  E  I  R   </second_frame>
            <third_frame>   L  V  S  L  C  R  I  S  K  N  N  T  L  Q  H  S  K  Q  R  N  K  E  S  L  S  C  F  V  H  S  F  F  D  F  S  F  C  S  *  *  C  S  V  F  C  S  S  K  N  G  C  H  L  E  S  I  R :   I  P  K  R  V  G  G  E  E  K  K  E  R  S  L  L  *  S  W  L  W  L  R  M  L  L  L  T  L  L  F  H  R  I  P  E  E  L  Y  R  R  M  L  L  L  I  I  S  Q  *  K  R  N  R  T  M  M  C  R  G  R  R  F  P  A  I  R  I  L  K  L  C  L  L  I  S  R  S  R  K  N  P  R  R  R  M  E  F  S  R  K  R  K  A  *  M  V  M  E  Y  W  I  V  I  V  F  S  I  R  K  *  T  V  L  M  V  V  M  K  G  L  R  R  R  *  G  I  W  R  K  C  F  P  N  *  I  P  W  L  K  S  L  C  L  F  Q  W  L  T  T  T  C  *  C  H  I  H  P  A  Q  C  I  L  A  L  M  L  T  I  F  *  C  R  L  R  P  M  E  I  P  T  E  G :   R  K  M  A  T  V  M  E  G  E  G  *  I  P  E  Q  A  W  P  K  G  K  M  L  *  G  G  R  F  M  Y  P  T  L  I  I  R :   *  L  K  S  S  S  H  H  F  F  L  I  A  D  R :   L  L  T  V  V  Y  V  V  T  P  I  L  Y  F  D  S  P  L  L  S  L  Q  M  K  :  K  V  Q  R  V  L  *  V  L  Q  E  L  S  L  G  V  I  L  *  E  C  F  L  L  K  L  R  L  H  R  L  I  Q  P  F  F  L  G :   L  K  M  K  E  R  C  V  L  E  L  C  T  V  Q  I  L  I  R  R :   L  L  K  Q  M  S  S  C  F  L  S  P  Y  V  E  R :   F  I  A  *  G  C  L  V  T  I  I  I  R  L  V  S  L  L  L  S  L  S  W :   Q  R  A  Q  L  *  H  *  T  A  V  V  H  S  W  D  H  F  P  *   : G  *  A  H  Q  R  L  L  C  V  R  V  L  L  V  K  Q  C  S  D  Q  S  L  W  H  C  F  S  V  G  L  L  L  I  S  I  S  K  Y  I  L  H  I  V  L  E  Y  F  S  G  I  F  H  L  V  F  S  T  K  S  L  L  R  I  S  N  S  R  G  T  S  Y  Q  A  Y  R  V  G  L  V  Y  S  R  F  I  N  L  S  W  C  I  M  F  L  *  T  L  P  E  Y  Q  N  *  M  D  V  L  N  L  Q  L  Y  L  S  V  T  L  L  K  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14787" stop="14816"/>
                    <exon start="14931" stop="15479"/>
                    <exon start="16091" stop="16201"/>
                    <exon start="16294" stop="16338"/>
                    <exon start="16452" stop="16524"/>
                    <exon start="16619" stop="16731"/>
                    <exon start="16844" stop="16903"/>
                    <exon start="16985" stop="17032"/>
                    <exon start="17120" stop="17188"/>
                    <exon start="20518" stop="20579"/>
                    <exon start="20657" stop="20702"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKWLSFREYQNTKKGRRRREKGAFFVIIMAVVENAAINVVVSSNPRRIVQKDVVVDHQSVKTKQNNDVQRSKVSSDQNFEIMSVNQQEQEEPQKENGIQQKEESVNGNGVLDSHSIQHQKMNGVDGGDEGFKKEMRDLEEMLSKLNPMAEEFVPLSMANNNMLVPYTPGAVYFGFDANNFLMQTEANGNSNRRKKNGYGHGRRRMNTRTGMAQREDVIRRTVYVSDIDHQVTEEQLASLFLDCGQVVDCRICGDTNSVLRFAFIEFTDEEGAKSALSLAGTILGGYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTVYCTNIDKKITQADVKLFFESLCGEVHRLRLLGDYHHSTRIAFVEFVMAESAIIALNCSGAFLGSLPIRVSPSKTPVRPRFTR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="30205" PGL_stop="30733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30205" e_stop="30733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="30205" e_stop="30733" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30205" stop="30733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333132" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCCTCTTCATCTCCTTCCCCTCTTTTAAGATAAGAAAAAAAAAACCTAAACGCCATTCACAAACCTCAATTTGCTTCTTCTTCTTCTCCGTTCAATCAATAATCTATCTTCTTCTCGATCTAATTACTACTTTTTCTAGGTATCGTTTTCGTGTTTGATTAGTTTTCTAGGGTTTCAGTAATGGCGCCGCCTGGAGAAATACCGTCGAACAATCTATGGGTTGGTAATATAGCACCAGATGTTACTGATGCAGATCTAACGTCTTTGTTCCAGAAATACGGACAGCTTGATAGTGTAACCGCTTATTCTTCTCGCGGATTTGGTTTTCTCTATTTCAAAAACATCAACGATTCTAAGGAGGCTAAAGACGCGCTTCAGGGATCCCTCTTCCATGGAAATCCTCTTAGGATTGAATTCGCAAAGCCGGTTTGTGTTTTTGATTTTCTGTCTATTCTGATTCTCATTCGGATGGATTTTTGTTGTTTATTCATCAATTACTTGTTAATTTTTTTTACTAAAATTTTCAA</gDNA_template>
            <first_frame> S  P  L  H  L  L  P  L  F  *  D  K  K  K  K  T  *  T  P  F  T  N  L  N  L  L  L  L  L  L  R  S  I  N  N  L  S  S  S  R  S  N  Y  Y  F  F  *  V  S  F  S  C  L  I  S  F  L  G  F  Q  *  W  R  R  L  E  K  Y  R  R  T  I  Y  G  L  V  I  *  H  Q  M  L  L  M  Q  I  *  R  L  C  S  R  N  T  D  S  L  I  V  *  P  L  I  L  L  A  D  L  V  F  S  I  S  K  T  S  T  I  L  R  R  L  K  T  R  F  R  D  P  S  S  M  E  I  L  L  G  L  N  S  Q  S  R  F  V  F  L  I  F  C  L  F  *  F  S  F  G  W  I  F  V  V  Y  S  S  I  T  C  *  F  F  L  L  K  F  S  </first_frame>
            <second_frame>  R  L  F  I  S  F  P  S  F  K  I  R  K  K  K  P  K  R  H  S  Q  T  S  I  C  F  F  F  F  S  V  Q  S  I  I  Y  L  L  L  D  L  I  T  T  F  S  R  Y  R  F  R  V  *  L  V  F  *  G  F  S  N  G  A  A  W  R  N  T  V  E  Q  S  M  G  W  *  Y  S  T  R  C  Y  *  C  R  S  N  V  F  V  P  E  I  R  T  A  *  *  C  N  R  L  F  F  S  R  I  W  F  S  L  F  Q  K  H  Q  R  F  *  G  G  *  R  R  A  S  G  I  P  L  P  W  K  S  S  *  D  *  I  R  K  A  G  L  C  F  *  F  S  V  Y  S  D  S  H  S  D  G  F  L  L  F  I  H  Q  L  L  V  N  F  F  Y  *  N  F  Q </second_frame>
            <third_frame>   A  S  S  S  P  S  P  L  L  R  *  E  K  K  N  L  N  A  I  H  K  P  Q  F  A  S  S  S  S  P  F  N  Q  *  S  I  F  F  S  I  *  L  L  L  F  L  G  I  V  F  V  F  D  *  F  S  R  V  S  V  M  A  P  P  G  E  I  P  S  N  N  L  W  V  G  N  I  A  P  D  V  T  D  A  D  L  T  S  L  F  Q  K  Y  G  Q  L  D  S  V  T  A  Y  S  S  R  G  F  G  F  L  Y  F  K  N  I  N  D  S  K  E  A  K  D  A  L  Q  G  S  L  F  H  G  N  P  L  R  I  E  F  A  K  P  V  C  V  F  D  F  L  S  I  L  I  L  I  R  M  D  F  C  C  L  F  I  N  Y  L  L  I  F  F  T  K  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30369" stop="30731"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSRVSVMAPPGEIPSNNLWVGNIAPDVTDADLTSLFQKYGQLDSVTAYSSRGFGFLYFKNINDSKEAKDALQGSLFHGNPLRIEFAKPVCVFDFLSILILIRMDFCCLFINYLLIFFTKIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37756" PGL_stop="39115"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37756" e_stop="39115"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="37756" e_stop="39115" e_length="1360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37756" stop="38852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38602" stop="39115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTGTTTTTTTCTAAAAAAAAATGACTGGTACAATCCATTCAAAGAGAAGAGAGAGGATCAACGCTCTAGCTAGTAATTCTTTTTTGGAAGTGTAGACATTCAGTATTTGTAGGCCTGGAGATGAAAGTGATCTAGATGCTTAATGATGGTTGGGTGTTAAGTTTGGCATCAAATAGAAATATTTCAATAAGTGAAAAGCTTTAATGGTTGCAGAAAGATTGTGACAAGTTGGAAGTTTGCTTGTGAAATTAGTTATTACTGGATATTTTTACTGTAGTCTTGTTAGAAATTTTCCAGGAGGCACTTTCTTTGTCCATATGACTATATTTAATAGGAGAAATCAACGGGATAAGTCAAAATGATTCATGGACATTTGAACAAGACTCCATATTCAATTGGTTTTTCAGTGGTGAAAATTGACGAGGGTCATAGATGTCTAGCATCTATTGTTTGCATCAGACGTTTTAGGTTGACAAACTTTAGTGGTGGGATAGTAGTTCTATTCTGAATATATTGCCTTTAAGCCTTCATGCTCTGGAATTCTGTAGATCAGTAGGGATCCTCTCTTTACCAGTGACACATTTCTTTTTGTGAGGCGGTCTCTCTTTTTCAATCTGACCATTTATATCTACTGATTGTTGAACCCAAAAAAAAAAAAAAGGAAATTATCTATTGAATGTGTTCGCCATGTCCAGTTGTTTAGCATTTTTAGAGCCTCGCCTTTATGCACTCTAAGCTAATAACATAATATTATGTGTTAATTACTGCCACCGTCTTATTGGTTTAGTGGGAGCATTCTTCGTTTTGCCTGCATGATTACCCCAACTTCTCTTATTTGTTAACTTTTTCACCATATTTTTGTTGCTACTTTTATTTTGGTCTCGTGTTTTTCATATGCATTAGTTTAGGATATGGTGGTTTATACTGATATGGTATTGTAGCTTTCTTTGGATGAGCTTCAGTATTTTGACTATAGTTGATCTATATTTTCTGTTAGTAGAATTCAAATAACAAATGCTTAATATTACTAAGTTGAGTTGTAAATTGGCGTTGTGGAAAACTATAATTCTACTGAATCTTGGAACATATATTCCTGCAGTATTTAATATGCTTGCTCTTCATCAATATATATTTTAGGAATATACCAAGATATATGAAATACAAACTCATTACAAATATCCAAAACTCTACGCAAGAACACTAGCCAAATATCAATATTCGTGTTTCCAGTAAAATAGGAATCTCTACATCTAGACAACACTTCTCTGTAACGACTACAGCTATTTGGCTGTGCATTTAGTTTCAACAAACCTGCACATTGACTTAAAATGCTATCTTCCAATCGCTTAAATGTTCTC</gDNA_template>
            <first_frame> F  C  F  F  L  K  K  N  D  W  Y  N  P  F  K  E  K  R  E  D  Q  R  S  S  *  *  F  F  F  G  S  V  D  I  Q  Y  L  *  A  W  R  *  K  *  S  R  C  L  M  M  V  G  C  *  V  W  H  Q  I  E  I  F  Q  *  V  K  S  F  N  G  C  R  K  I  V  T  S  W  K  F  A  C  E  I  S  Y  Y  W  I  F  L  L  *  S  C  *  K  F  S  R  R  H  F  L  C  P  Y  D  Y  I  *  *  E  K  S  T  G  *  V  K  M  I  H  G  H  L  N  K  T  P  Y  S  I  G  F  S  V  V  K  I  D  E  G  H  R  C  L  A  S  I  V  C  I  R  R  F  R  L  T  N  F  S  G  G  I  V  V  L  F  *  I  Y  C  L  *  A  F  M  L  W  N  S  V  D  Q  *  G  S  S  L  Y  Q  *  H  I  S  F  C  E  A  V  S  L  F  Q  S  D  H  L  Y  L  L  I  V  E  P  K  K  K  K  K  E  I  I  Y  *  M  C  S  P  C  P  V  V  *  H  F  *  S  L  A  F  M  H  S  K  L  I  T  *  Y  Y  V  L  I  T  A  T  V  L  L  V  *  W  E  H  S  S  F  C  L  H  D  Y  P  N  F  S  Y  L  L  T  F  S  P  Y  F  C  C  Y  F  Y  F  G  L  V  F  F  I  C  I  S  L  G  Y  G  G  L  Y  *  Y  G  I  V  A  F  F  G  *  A  S  V  F  *  L  *  L  I  Y  I  F  C  *  *  N  S  N  N  K  C  L  I  L  L  S  *  V  V  N  W  R  C  G  K  L  *  F  Y  *  I  L  E  H  I  F  L  Q  Y  L  I  C  L  L  F  I  N  I  Y  F  R  N  I  P  R  Y  M  K  Y  K  L  I  T  N  I  Q  N  S  T  Q  E  H  *  P  N  I  N  I  R  V  S  S  K  I  G  I  S  T  S  R  Q  H  F  S  V  T  T  T  A  I  W  L  C  I  *  F  Q  Q  T  C  T  L  T  *  N  A  I  F  Q  S  L  K  C  S  </first_frame>
            <second_frame>  F  V  F  F  *  K  K  M  T  G  T  I  H  S  K  R  R  E  R  I  N  A  L  A  S  N  S  F  L  E  V  *  T  F  S  I  C  R  P  G  D  E  S  D  L  D  A  *  *  W  L  G  V  K  F  G  I  K  *  K  Y  F  N  K  *  K  A  L  M  V  A  E  R  L  *  Q  V  G  S  L  L  V  K  L  V  I  T  G  Y  F  Y  C  S  L  V  R  N  F  P  G  G  T  F  F  V  H  M  T  I  F  N  R  R  N  Q  R  D  K  S  K  *  F  M  D  I  *  T  R  L  H  I  Q  L  V  F  Q  W  *  K  L  T  R  V  I  D  V  *  H  L  L  F  A  S  D  V  L  G  *  Q  T  L  V  V  G  *  *  F  Y  S  E  Y  I  A  F  K  P  S  C  S  G  I  L  *  I  S  R  D  P  L  F  T  S  D  T  F  L  F  V  R  R  S  L  F  F  N  L  T  I  Y  I  Y  *  L  L  N  P  K  K  K  K  R  K  L  S  I  E  C  V  R  H  V  Q  L  F  S  I  F  R  A  S  P  L  C  T  L  S  *  *  H  N  I  M  C  *  L  L  P  P  S  Y  W  F  S  G  S  I  L  R  F  A  C  M  I  T  P  T  S  L  I  C  *  L  F  H  H  I  F  V  A  T  F  I  L  V  S  C  F  S  Y  A  L  V  *  D  M  V  V  Y  T  D  M  V  L  *  L  S  L  D  E  L  Q  Y  F  D  Y  S  *  S  I  F  S  V  S  R  I  Q  I  T  N  A  *  Y  Y  *  V  E  L  *  I  G  V  V  E  N  Y  N  S  T  E  S  W  N  I  Y  S  C  S  I  *  Y  A  C  S  S  S  I  Y  I  L  G  I  Y  Q  D  I  *  N  T  N  S  L  Q  I  S  K  T  L  R  K  N  T  S  Q  I  S  I  F  V  F  P  V  K  *  E  S  L  H  L  D  N  T  S  L  *  R  L  Q  L  F  G  C  A  F  S  F  N  K  P  A  H  *  L  K  M  L  S  S  N  R  L  N  V  L </second_frame>
            <third_frame>   L  F  F  S  K  K  K  *  L  V  Q  S  I  Q  R  E  E  R  G  S  T  L  *  L  V  I  L  F  W  K  C  R  H  S  V  F  V  G  L  E  M  K  V  I  *  M  L  N  D  G  W  V  L  S  L  A  S  N  R  N  I  S  I  S  E  K  L  *  W  L  Q  K  D  C  D  K  L  E  V  C  L  *  N  *  L  L  L  D  I  F  T  V  V  L  L  E  I  F  Q  E  A  L  S  L  S  I  *  L  Y  L  I  G  E  I  N  G  I  S  Q  N  D  S  W  T  F  E  Q  D  S  I  F  N  W  F  F  S  G  E  N  *  R  G  S  *  M  S  S  I  Y  C  L  H  Q  T  F  *  V  D  K  L  *  W  W  D  S  S  S  I  L  N  I  L  P  L  S  L  H  A  L  E  F  C  R  S  V  G  I  L  S  L  P  V  T  H  F  F  L  *  G  G  L  S  F  S  I  *  P  F  I  S  T  D  C  *  T  Q  K  K  K  K  G  N  Y  L  L  N  V  F  A  M  S  S  C  L  A  F  L  E  P  R  L  Y  A  L  *  A  N  N  I  I  L  C  V  N  Y  C  H  R  L  I  G  L  V  G  A  F  F  V  L  P  A  *  L  P  Q  L  L  L  F  V  N  F  F  T  I  F  L  L  L  L  L  F  W  S  R  V  F  H  M  H  *  F  R  I  W  W  F  I  L  I  W  Y  C  S  F  L  W  M  S  F  S  I  L  T  I  V  D  L  Y  F  L  L  V  E  F  K  *  Q  M  L  N  I  T  K  L  S  C  K  L  A  L  W  K  T  I  I  L  L  N  L  G  T  Y  I  P  A  V  F  N  M  L  A  L  H  Q  Y  I  F  *  E  Y  T  K  I  Y  E  I  Q  T  H  Y  K  Y  P  K  L  Y  A  R  T  L  A  K  Y  Q  Y  S  C  F  Q  *  N  R  N  L  Y  I  *  T  T  L  L  C  N  D  Y  S  Y  L  A  V  H  L  V  S  T  N  L  H  I  D  L  K  C  Y  L  P  I  A  *  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0047K24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="45379" PGL_stop="44684"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45379" e_stop="44684"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.902">
            <gDNA_exon_boundary e_start="45379" e_stop="44684" e_length="696"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45379" stop="44684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339540" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGATTCATTAGAGAAAGTGAAATCTATTCAAGAAAAGCTTCTAGCGGCGCAAAGTAGGCAAAAAGAATATGCAGACCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAGGTTTCGCTAATGAAAGGGGTGATGCGGTTTGGTAAGCGAGGTAAACTTAGCCCAAGGTATATTGGTCCATTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAGTTAGCCTTGCCTCCAGAGCTGTCCGGAGTGCATCCGGTATTCCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAATTTTGCTTGATGAGAATTTGTCTTATGAGGAGGAACCTGTTGCCATTCTAGATAGAGAAATTCACAAGTTGAGATCAAGGGAGATTGCATCCATCAAAGTTCAATGGAAGAATCGACCCGTTGAAGAAGCCACTTGGGAGAAGGAGGCAGATATGCGAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTTCGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGTCGTTTTGAGCAGCAGATTTTATTTCTGGAAAACTGGCAGAGACGACGAACCGCACGACGGACCGTCATGGGCACGACGGA</gDNA_template>
            <first_frame> G  F  I  R  E  S  E  I  Y  S  R  K  A  S  S  G  A  K  *  A  K  R  I  C  R  P  K  G  *  R  L  R  V  H  G  G  *  T  S  L  V  E  G  F  A  N  E  R  G  D  A  V  W  *  A  R  *  T  *  P  K  V  Y  W  S  I  *  S  T  *  A  S  R  G  G  G  L  *  V  S  L  A  S  R  A  V  R  S  A  S  G  I  P  C  V  D  V  E  K  I  P  W  G  W  K  L  H  Y  P  L  G  F  N  F  A  *  *  E  F  V  L  *  G  G  T  C  C  H  S  R  *  R  N  S  Q  V  E  I  K  G  D  C  I  H  Q  S  S  M  E  E  S  T  R  *  R  S  H  L  G  E  G  G  R  Y  A  R  K  I  P  T  S  V  Y  R  F  R  Y  S  F  S  P  L  F  S  F  L  *  S  F  G  D  E  R  W  V  N  W  Y  L  L  *  R  P  V  *  S  F  *  A  A  D  F  I  S  G  K  L  A  E  T  T  N  R  T  T  D  R  H  G  H  D  G </first_frame>
            <second_frame>  D  S  L  E  K  V  K  S  I  Q  E  K  L  L  A  A  Q  S  R  Q  K  E  Y  A  D  R  K  V  R  D  L  E  F  M  E  G  E  Q  V  L  L  K  V  S  L  M  K  G  V  M  R  F  G  K  R  G  K  L  S  P  R  Y  I  G  P  F  E  V  L  K  R  V  G  E  V  A  Y  E  L  A  L  P  P  E  L  S  G  V  H  P  V  F  H  V  S  M  L  K  R  Y  H  G  D  G  N  Y  I  I  R  W  D  S  I  L  L  D  E  N  L  S  Y  E  E  E  P  V  A  I  L  D  R  E  I  H  K  L  R  S  R  E  I  A  S  I  K  V  Q  W  K  N  R  P  V  E  E  A  T  W  E  K  E  A  D  M  R  E  R  Y  P  H  L  F  T  D  S  G  T  P  F  R  P  C  F  P  S  C  D  R  S  G  T  N  D  G  *  I  G  I  Y  C  N  D  L  F  S  R  F  E  Q  Q  I  L  F  L  E  N  W  Q  R  R  R  T  A  R  R  T  V  M  G  T  T   </second_frame>
            <third_frame>   I  H  *  R  K  *  N  L  F  K  K  S  F  *  R  R  K  V  G  K  K  N  M  Q  T  E  R  L  E  T  *  S  S  W  R  V  N  K  S  C  *  R  F  R  *  *  K  G  *  C  G  L  V  S  E  V  N  L  A  Q  G  I  L  V  H  L  K  Y  L  S  E  *  G  R  W  L  M  S  *  P  C  L  Q  S  C  P  E  C  I  R  Y  S  M  C  R  C  *  K  D  T  M  G  M  E  T  T  L  S  V  G  I  Q  F  C  L  M  R  I  C  L  M  R  R  N  L  L  P  F  *  I  E  K  F  T  S  *  D  Q  G  R  L  H  P  S  K  F  N  G  R  I  D  P  L  K  K  P  L  G  R  R  R  Q  I  C  E  K  D  T  H  I  C  L  Q  I  Q  V  L  L  F  A  L  V  F  L  L  V  I  V  R  G  R  T  M  G  K  L  V  S  I  V  T  T  C  L  V  V  L  S  S  R  F  Y  F  W  K  T  G  R  D  D  E  P  H  D  G  P  S  W  A  R  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45378" stop="44794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSLEKVKSIQEKLLAAQSRQKEYADRKVRDLEFMEGEQVLLKVSLMKGVMRFGKRGKLSPRYIGPFEVLKRVGEVAYELALPPELSGVHPVFHVSMLKRYHGDGNYIIRWDSILLDENLSYEEEPVAILDREIHKLRSREIASIKVQWKNRPVEEATWEKEADMRERYPHLFTDSGTPFRPCFPSCDRSGTNDG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="46921" PGL_stop="48672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46921" e_stop="48672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="46921" e_stop="48672" e_length="1752"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46921" stop="47634"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47442" stop="48061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47511" stop="48261"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48114" stop="48672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGATACTGCATCTAGCCAAAACTCATACTTAAAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATTATCATCAATAAATACGATCACAAATAGATCCAGATATGGCTTAAAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAATAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGATAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTCAATTCGGCGGGAGCCATTCTATAAGTGGGTATATAAATGGGGCGAGTACCCGGTTCAAGATCAATACAAAAGTTAATATCCTTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACGGACTACCGAAACTGACTCAATCGAGGGTACTTGGGTAGTGTCATCCTTAAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCATGAAGAAAGGAGATGATACGCACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCATAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCAAGACCTATATACCTTTTTAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGTATGTCAAGTAATTCACAACGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAATCAAAAGATTACCTGTGATGACAGCATCTGATGTCTCCGCTTCAGATCTCCCAGGAAAAGCGTAGCAATGGGCCCCATTACTTGTCTGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCTAGTTTGCCCATCACCCCGTCCGTTTTGGTGACCACCATTACCTCGACCACCGCATCCTCCAGAATGACGGCCTCTTCCATAACCACCTCTACCTCTAGCTATTGGGGGTCGGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACATCCATAGCACTCTCTGGGTTCATGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGAACTGAGTAACCTCCGGAACCCTGTTCTCTAGAGTAAGAACCATTAAACTCACC</gDNA_template>
            <first_frame> E  S  L  D  K  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  Y  C  I  *  P  K  L  I  L  K  E  L  G  I  K  L  F  L  P  Q  H  F  *  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  Y  H  Q  *  I  R  S  Q  I  D  P  D  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  I  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  C  S  T  A  D  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  T  T  L  E  V  G  P  L  T  L  S  I  R  R  E  P  F  Y  K  W  V  Y  K  W  G  E  Y  P  V  Q  D  Q  Y  K  S  *  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  K  T  H  G  L  P  K  L  T  Q  S  R  V  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  P  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  *  L  H  Q  N  Q  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  S  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  Y  V  K  *  F  T  T  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  *  C  L  R  F  R  S  P  R  K  S  V  A  M  G  P  I  T  C  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  P  S  V  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  A  S  S  I  T  T  S  T  S  S  Y  W  G  S  V  T  L  F  W  T  I  S  L  N  M  S  N  L  P  T  S  I  A  L  S  G  F  M  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  N  *  V  T  S  G  T  L  F  S  R  V  R  T  I  K  L  T </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  Y  L  K  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  I  I  N  K  Y  D  H  K  *  I  Q  I  W  L  K  N  P  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  *  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  V  Q  L  P  I  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  A  Q  Q  L  L  K  L  G  L  *  L  S  Q  F  G  G  S  H  S  I  S  G  Y  I  N  G  A  S  T  R  F  K  I  N  T  K  V  N  I  L  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  D  Y  R  N  *  L  N  R  G  Y  L  G  S  V  I  L  K  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  M  K  K  G  D  D  T  H  R  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  H  N  Y  I  K  I  N  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Q  D  L  Y  T  F  L  T  T  T  D  S  P  T  G  V  E  T  R  I  G  M  S  S  N  S  Q  R  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  I  K  R  L  P  V  M  T  A  S  D  V  S  A  S  D  L  P  G  K  A  *  Q  W  A  P  L  L  V  C  L  L  P  L  P  C  C  D  V  V  A  L  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  H  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  R  *  L  C  F  G  Q  Y  L  L  I  C  P  I  S  P  H  P  *  H  S  L  G  S  C  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  S  L  E  *  E  P  L  N  S   </second_frame>
            <third_frame>   I  P  *  Q  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  I  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  L  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  L  S  S  I  N  T  I  T  N  R  S  R  Y  G  L  K  I  P  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  V  G  I  *  M  G  R  V  P  G  S  R  S  I  Q  K  L  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  K  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  *  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  I  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  K  T  Y  I  P  F  *  L  P  Q  T  H  P  P  E  *  K  H  E  *  V  C  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  S  K  D  Y  L  *  *  Q  H  L  M  S  P  L  Q  I  S  Q  E  K  R  S  N  G  P  H  Y  L  S  V  C  C  P  Y  H  V  V  M  *  W  L  *  F  A  H  H  P  V  R  F  G  D  H  H  Y  L  D  H  R  I  L  Q  N  D  G  L  F  H  N  H  L  Y  L  *  L  L  G  V  G  N  S  V  L  D  N  I  S  *  Y  V  Q  S  P  H  I  H  S  T  L  W  V  H  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48346" stop="48600"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITPSVLVTTITSTTASSRMTASSITTSTSSYWGSVTLFWTISLNMSNLPTSIALSGFMHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47103" stop="47315"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTWHKAFSPSTFLIPFSNALHVPSCSLSIPILSSINTITNRSRYGLKIPFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47225" stop="47425"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQIWLKNPVHQAHERSRGIRKTKRHHYKFVMPIPRSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47661" stop="47858"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGRVPGSRSIQKLISLSGGIPGRSAGNTSKNSRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="48931" PGL_stop="47530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48931" e_stop="48759"/>
            <exon e_start="48021" e_stop="47530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.948"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="48931" e_stop="48759" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48758" i_stop="48022" i_length="737"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="48021" e_stop="47530" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48931" stop="48759"/>
              <exon start="48021" stop="47530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTTGGTTACTGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCAACCCAACTTTGTTTCAGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAGGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGTTGATTTTGATGTAATTATGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCATGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTTAAGGATGACACTACCCAAGTACCCTCGATTGAGTCAGTTTCGGTAGTCCGTGAGTTTTTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAAGGATATTAACTTTTGTATTGATCTTGAACCGGGTACTCGCCCCATTTATATACCCACTTATAGAATGGCTCCCGCCGAATTGAGAGAGTTAAAGGCCCAACTTCAAGAGTTGTTGAGCAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGA</gDNA_template>
            <first_frame> A  R  *  D  V  G  Y  C  I  *  G  *  V  S  C  T  I  Q  I  C  N  P  T  L  F  Q  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  G  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  Y  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  G  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  *  G  *  H  Y  P  S  T  L  D  *  V  S  F  G  S  P  *  V  F  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  G  Y  S  P  H  L  Y  T  H  L  *  N  G  S  R  R  I  E  R  V  K  G  P  T  S  R  V  V  E  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K   </first_frame>
            <second_frame>  Q  G  R  M  L  V  T  A  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  V  D  F  D  V  I  M  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  H  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  K  D  I  N  F  C  I  D  L  E  P  G  T  R  P  I  Y  I  P  T  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  </second_frame>
            <third_frame>   K  V  G  C  W  L  L  H  M  R  L  S  F  V  H  Y  P  D  M  Q  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  R  *  R  L  R  Q  N  P  S  K  :  K  W  L  I  L  M  *  L  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  R  C  V  S  S  P  F  F  M  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  L  R  M  T  L  P  K  Y  P  R  L  S  Q  F  R  *  S  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  R  I  L  T  F  V  L  I  L  N  R  V  L  A  P  F  I  Y  P  L  I  E  W  L  P  P  N  *  E  S  *  R  P  N  F  K  S  C  *  A  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48930" stop="48759"/>
                    <exon start="48021" stop="47531"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>663</number_coding_nucleotides>
                  <number_encoded_amino_acids>221</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMLVTAYEAKFRALSRYATQLCFSPQERIRRFVKGLRSELRISALQVAATAKSFQEMVDFDVIMGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLHAKKMVSKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDKDINFCIDLEPGTRPIYIPTYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="49553" PGL_stop="49001"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49553" e_stop="49001"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="49553" e_stop="49001" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49553" stop="49001"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335931" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGCCCATCTGATGCTAGGGCGGTGACTCCTCCACCGACTGAGGAAGTAGTAAGAGAGGGTGAGGAAGGGGAGAATGAACAAGTGCAAAATGATGAATTGCCACCCCAACCTACCCTAGAGATGATCAATCAGGTTCTCGCTTATCTTAGTGGGTTATCTGATCAGGGCCAGACACCTCCAGTGTTTTCTGCACCAGCACCTCAGGTTCCGGGGGTGCAACATGCGGCTACTATGGCTCCTTGTATGGATGCCTCATTGGACATAGGCACGTTTCCACGTCTGACTACTGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAACTGAAACCTCCAGTCTTCAAGGGTGCTGAATCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGATCACATGTTGAGTGTCAACCGACAGAGGCAACACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  P  I  *  C  *  G  G  D  S  S  T  D  *  G  S  S  K  R  G  *  G  R  G  E  *  T  S  A  K  *  *  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  R  L  S  *  W  V  I  *  S  G  P  D  T  S  S  V  F  C  T  S  T  S  G  S  G  G  A  T  C  G  Y  Y  G  S  L  Y  G  C  L  I  G  H  R  H  V  S  T  S  D  Y  W  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  T  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  S  P  S  D  A  R  A  V  T  P  P  P  T  E  E  V  V  R  E  G  E  E  G  E  N  E  Q  V  Q  N  D  E  L  P  P  Q  P  T  L  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  V  P  G  V  Q  H  A  A  T  M  A  P  C  M  D  A  S  L  D  I  G  T  F  P  R  L  T  T  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  N  Q  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  D  H  M  L  S  V  N  R  Q  R  Q  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  A  H  L  M  L  G  R  *  L  L  H  R  L  R  K  *  *  E  R  V  R  K  G  R  M  N  K  C  K  M  M  N  C  H  P  N  L  P  *  R  *  S  I  R  F  S  L  I  L  V  G  Y  L  I  R  A  R  H  L  Q  C  F  L  H  Q  H  L  R  F  R  G  C  N  M  R  L  L  W  L  L  V  W  M  P  H  W  T  *  A  R  F  H  V  *  L  L  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  T  E  T  S  S  L  Q  G  C  *  I  R  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  I  T  C  *  V  S  T  D  R  G  N  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49388" stop="49002"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGPDTSSVFCTSTSGSGGATCGYYGSLYGCLIGHRHVSTSDYWPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHVECQPTEATPMTWASF</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49552" stop="49253"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPSDARAVTPPPTEEVVREGEEGENEQVQNDELPPQPTLEMINQVLAYLSGLSDQGQTPPVFSAPAPQVPGVQHAATMAPCMDASLDIGTFPRLTTGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="50993" PGL_stop="50396"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50993" e_stop="50807"/>
            <exon e_start="50727" e_stop="50396"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="50993" e_stop="50807" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="50806" i_stop="50728" i_length="79"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="50727" e_stop="50396" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50993" stop="50807"/>
              <exon start="50727" stop="50396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335078" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTAGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATGAGGATCGGAGTGTCACGTTTCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGTATATG : GATCGGAGTGTCACGTTCCGACACCAGGATAGTATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGAATATGGATCGGGTGCCACGTTCTGGTACCAGGATAGTATATGAGGAGCGGAGTGTCACGTACCGACACGAGAGGAATAAAGATAATGAAATCTTGAAAGATATTAATATACTCAATCTAATGAATTTAATTCCCAAATAAGTATGATGAGGAGGCGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACT</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  S  E  I  R  G  S  G  A  T  F  R  Y  Q  D  S  I  *  G  S  E  C  H  V  S  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  V  Y   : G  S  E  C  H  V  P  T  P  G  *  Y  M  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  G  A  T  F  W  Y  Q  D  S  I  *  G  A  E  C  H  V  P  T  R  E  E  *  R  *  *  N  L  E  R  Y  *  Y  T  Q  S  N  E  F  N  S  Q  I  S  M  M  R  R  R  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  V  Y  E  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  P  V  P  G  *  Y  M  :  D  R  S  V  T  F  R  H  Q  D  S  I  W  I  G  C  H  V  L  V  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  V  Y  E  E  R  S  V  T  Y  R  H  E  R  N  K  D  N  E  I  L  K  D  I  N  I  L  N  L  M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I   </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  *  *  D  *  G  I  G  C  H  V  P  V  P  G  *  Y  M  R  I  G  V  S  R  F  D  T  R  I  V  Y  G  S  G  A  T  F  R  Y  Q  D  S  I  W :   I  G  V  S  R  S  D  T  R  I  V  Y  G  S  G  A  T  F  W  Y  Q  D  R  I  W  I  G  C  H  V  L  V  P  G  *  Y  M  R  S  G  V  S  R  T  D  T  R  G  I  K  I  M  K  S  *  K  I  L  I  Y  S  I  *  *  I  *  F  P  N  K  Y  D  E  E  A  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0047K24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="75983" PGL_stop="68010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75983" e_stop="75793"/>
            <exon e_start="75577" e_stop="75572"/>
            <exon e_start="75518" e_stop="75444"/>
            <exon e_start="75374" e_stop="74467"/>
            <exon e_start="70542" e_stop="70410"/>
            <exon e_start="70156" e_stop="70072"/>
            <exon e_start="69017" e_stop="68091"/>
            <exon e_start="68020" e_stop="68010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="0.984"/>
          <exon-intron don_prob="0.900" acc_prob="0.999" e_score="0.500"/>
          <exon-intron don_prob="0.000" acc_prob="0.391" e_score="0.987"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.962" e_score="0.954"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="75983" e_stop="75793" e_length="191"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="75792" i_stop="75578" i_length="215"/>
          </intron>
          <exon e_serial="2" e_score="0.500">
            <gDNA_exon_boundary e_start="75577" e_stop="75572" e_length="6"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.999">
            <gDNA_intron_boundary i_start="75571" i_stop="75519" i_length="53"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="75518" e_stop="75444" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.391">
            <gDNA_intron_boundary i_start="75443" i_stop="75375" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="75374" e_stop="74467" e_length="908"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74466" i_stop="70543" i_length="3924"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="70542" e_stop="70410" e_length="133"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="70409" i_stop="70157" i_length="253"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="70156" e_stop="70072" e_length="85"/>
          </exon>
          <intron i_serial="6" don_prob="0.867" acc_prob="0.998">
            <gDNA_intron_boundary i_start="70071" i_stop="69018" i_length="1054"/>
          </intron>
          <exon e_serial="7" e_score="0.954">
            <gDNA_exon_boundary e_start="69017" e_stop="68091" e_length="927"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.962">
            <gDNA_intron_boundary i_start="68090" i_stop="68021" i_length="70"/>
          </intron>
          <exon e_serial="8" e_score="0.636">
            <gDNA_exon_boundary e_start="68020" e_stop="68010" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75983" stop="75793"/>
              <exon start="75577" stop="75572"/>
              <exon start="75518" stop="75444"/>
              <exon start="75374" stop="74467"/>
              <exon start="70542" stop="70410"/>
              <exon start="70156" stop="70072"/>
              <exon start="69017" stop="68091"/>
              <exon start="68020" stop="68010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCTCCCTGTCCGAATTTATAGTGTTTCCATTCTCACACAGATTTGCCTCTTTGTTTATCGTCTCTCTTCTCCACAAGCTTTTCCCTTTTCTCTCTCGCATGTGATAAAGCTGCTTCCTTCTGCTTCTGCTTCCCTTTTCACATTTTTCCCTTCTCTGCAGATCTAATTTCAAAGCTAATCGAAACCGT : ATCTTT : AGGGAATTGATCTGGGATAAGCTTGTTTGGTGTTTGCGGAATCTACAGGGTCTCAGCAAGGGGTTTCATGTTCTG : AGGAAAAGCAACTTGGATTGTGATTTTATGGTTTTCCTGCTATAATGTTCTTGCTTTGACCGGGGAAAAGTATCATTACTTGTTGATTTTTGGTTTTCTGTTGGTACGGTTCTTGTTGGAGTATATATATATGTGTGGGATGTTGGGTTTGTTCCTGTGCTGTTAACATTTGGAATTTGAAGGGTTGGGGTTTTTTCTGTTTGGATTTGGAGGGTTTGTATGGATAAGGATAAGTCTTCTTCAAGCCATATAGGAGGTTCGTTGCCTCCATCAGGGAGATACTCATTATTTTCACCTCCCGGTAGTAGCTCCAATGTAAAGTCAGAACAACCTGGATTAGCAAATTTACCTCCCTTAGGACCTGGAAATGCTTCAGAATCAGGTCATTTTGGTCATGGTTTGTCGGCAGATTCAAGCCTGTTTAGTCTTGATATAAGCCGAATGTCTGATAACCCACCAAGAAAATTTGGTCATAGGCGTGCCCACTCAGAAATTCTTACTCTTCCTGATGATATTAGCTTTGATAGTGATCTTGGCGTTGTTGGACTAGATGGACCGTCTCTGTCAGATGAGACTGAGGAGGACATCTTGTCAATGTACCTTGACATGGATAAGTTCAATTCTTCAACTCTGTCTTCTGAATTCCAAGTGGGTGAGTCTTCTTCAGCTGCTCCAGGTTCATCACAAACAACAGCAATGGCTTCAGGAACAAATAAATTTGCTCCTACTGTTAGTGAGAAGCCAAGAGTTAGACATCAGCATAGCCAGTCCATGGATGGTTCAACTACAATCAAGCCAGAGATGCTCATGTCAGGAGTGGAAGAGCCTTCTTCAGCTGAAACTAAGAAAGCCACGTCAGCTGCAAAGCTTGCTGAACTTGCTCTTATTGATCCTAAACGTGCCAAGCG : GATTTGGGCCAACAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAAATGAGATATATAGCAGAGCTTGAGAGAAAAGTTCAGACTCTGCAAACGGAAGCAACTACTTTATCTACTCAGTTGACCCTATTGCAG : AGAGATACAAACGGCCTGAATGCTGAAAACAGTGAACTTAAACTGCGTTTACAAACAATGGAACAACAGGTTCACTTGCAAGATG : CGTTGAATGATGCTTTAAAGGAGGAGATACAGCATCTGAAAGTGCTAACTGGGCAAGGCATAGCAAATGGTGGACCTATGATGAACTTCCCAGCAACCTTTGGAGGCAATCAGCAGTTCTACTCTAACAACCAGGCAATGCATACATTGTTGGCTGCACAACAACTTCAACAGCTCCAGCTACATTCTCATAAGCAACAACACCAGTTTCAGCAACATCAGCTACACCAGTTTCAGCAGCAACAGTTGCAGCACCAACAACAGCAACAGCAACCTCTTATGCAGCAGCAGCAGCAGCAGGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAACGCTTCTGATGTTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGATGGTGTATGTTTTAAAAATCATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTGAAACAACATCTAGCTCAGGTTCTCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTACTTTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTATGCATATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACACTGTTCAGTGTTCACATTTTTCGAATAATGTTTTGTGGCTTGCGCGATCGTGGAGGGTAAAATTCTCATGGTGCTCCTCAATAGGTAGGATTTACCAGAGGCGGATCCAGAGCGTAAACTATGGGGTTCAAGGAACTCCATAACTTTTATCTAGGCCTTTAAATGTATTCGTTAAATATTTGATCGTGAACTTGGTTAAATATTGTAATCCCC : AGAAAAAGTTA</gDNA_template>
            <first_frame> C  P  P  C  P  N  L  *  C  F  H  S  H  T  D  L  P  L  C  L  S  S  L  F  S  T  S  F  S  L  F  S  L  A  C  D  K  A  A  S  F  C  F  C  F  P  F  H  I  F  P  F  S  A  D  L  I  S  K  L  I  E  T  V :   S  L :   G  N  *  S  G  I  S  L  F  G  V  C  G  I  Y  R  V  S  A  R  G  F  M  F  * :   G  K  A  T  W  I  V  I  L  W  F  S  C  Y  N  V  L  A  L  T  G  E  K  Y  H  Y  L  L  I  F  G  F  L  L  V  R  F  L  L  E  Y  I  Y  M  C  G  M  L  G  L  F  L  C  C  *  H  L  E  F  E  G  L  G  F  F  L  F  G  F  G  G  F  V  W  I  R  I  S  L  L  Q  A  I  *  E  V  R  C  L  H  Q  G  D  T  H  Y  F  H  L  P  V  V  A  P  M  *  S  Q  N  N  L  D  *  Q  I  Y  L  P  *  D  L  E  M  L  Q  N  Q  V  I  L  V  M  V  C  R  Q  I  Q  A  C  L  V  L  I  *  A  E  C  L  I  T  H  Q  E  N  L  V  I  G  V  P  T  Q  K  F  L  L  F  L  M  I  L  A  L  I  V  I  L  A  L  L  D  *  M  D  R  L  C  Q  M  R  L  R  R  T  S  C  Q  C  T  L  T  W  I  S  S  I  L  Q  L  C  L  L  N  S  K  W  V  S  L  L  Q  L  L  Q  V  H  H  K  Q  Q  Q  W  L  Q  E  Q  I  N  L  L  L  L  L  V  R  S  Q  E  L  D  I  S  I  A  S  P  W  M  V  Q  L  Q  S  S  Q  R  C  S  C  Q  E  W  K  S  L  L  Q  L  K  L  R  K  P  R  Q  L  Q  S  L  L  N  L  L  L  L  I  L  N  V  P  S   : G  F  G  P  T  G  S  Q  L  Q  D  Q  R  K  G  K  *  D  I  *  Q  S  L  R  E  K  F  R  L  C  K  R  K  Q  L  L  Y  L  L  S  *  P  Y  C  R :   E  I  Q  T  A  *  M  L  K  T  V  N  L  N  C  V  Y  K  Q  W  N  N  R  F  T  C  K  M  :  R  *  M  M  L  *  R  R  R  Y  S  I  *  K  C  *  L  G  K  A  *  Q  M  V  D  L  *  *  T  S  Q  Q  P  L  E  A  I  S  S  S  T  L  T  T  R  Q  C  I  H  C  W  L  H  N  N  F  N  S  S  S  Y  I  L  I  S  N  N  T  S  F  S  N  I  S  Y  T  S  F  S  S  N  S  C  S  T  N  N  S  N  S  N  L  L  C  S  S  S  S  S  R  I  N  F  H  K  P  E  M  *  C  Q  E  V  L  C  H  L  L  K  M  K  T  L  L  M  L  V  L  *  Q  R  I  E  Q  L  M  A  R  E  T  G  D  G  V  C  F  K  N  H  H  V  F  S  H  L  A  A  H  F  C  V  S  K  S  S  R  V  E  T  T  S  S  S  G  S  L  A  F  S  *  L  L  H  L  H  F  S  T  F  V  G  S  F  D  F  *  L  K  L  F  K  S  H  S  M  H  M  S  F  C  Q  L  S  T  *  F  S  S  C  Y  Q  Y  C  W  W  *  F  F  W  T  S  I  T  Y  I  S  L  T  L  F  S  V  H  I  F  R  I  M  F  C  G  L  R  D  R  G  G  *  N  S  H  G  A  P  Q  *  V  G  F  T  R  G  G  S  R  A  *  T  M  G  F  K  E  L  H  N  F  Y  L  G  L  *  M  Y  S  L  N  I  *  S  *  T  W  L  N  I  V  I  P  :  R  K  S   </first_frame>
            <second_frame>  V  L  P  V  R  I  Y  S  V  S  I  L  T  Q  I  C  L  F  V  Y  R  L  S  S  P  Q  A  F  P  F  S  L  S  H  V  I  K  L  L  P  S  A  S  A  S  L  F  T  F  F  P  S  L  Q  I  *  F  Q  S  *  S  K  P   : Y  L   : *  G  I  D  L  G  *  A  C  L  V  F  A  E  S  T  G  S  Q  Q  G  V  S  C  S   : E  E  K  Q  L  G  L  *  F  Y  G  F  P  A  I  M  F  L  L  *  P  G  K  S  I  I  T  C  *  F  L  V  F  C  W  Y  G  S  C  W  S  I  Y  I  C  V  G  C  W  V  C  S  C  A  V  N  I  W  N  L  K  G  W  G  F  F  C  L  D  L  E  G  L  Y  G  *  G  *  V  F  F  K  P  Y  R  R  F  V  A  S  I  R  E  I  L  I  I  F  T  S  R  *  *  L  Q  C  K  V  R  T  T  W  I  S  K  F  T  S  L  R  T  W  K  C  F  R  I  R  S  F  W  S  W  F  V  G  R  F  K  P  V  *  S  *  Y  K  P  N  V  *  *  P  T  K  K  I  W  S  *  A  C  P  L  R  N  S  Y  S  S  *  *  Y  *  L  *  *  *  S  W  R  C  W  T  R  W  T  V  S  V  R  *  D  *  G  G  H  L  V  N  V  P  *  H  G  *  V  Q  F  F  N  S  V  F  *  I  P  S  G  *  V  F  F  S  C  S  R  F  I  T  N  N  S  N  G  F  R  N  K  *  I  C  S  Y  C  *  *  E  A  K  S  *  T  S  A  *  P  V  H  G  W  F  N  Y  N  Q  A  R  D  A  H  V  R  S  G  R  A  F  F  S  *  N  *  E  S  H  V  S  C  K  A  C  *  T  C  S  Y  *  S  *  T  C  Q  A  :  D  L  G  Q  Q  A  V  S  C  K  I  K  G  K  E  N  E  I  Y  S  R  A  *  E  K  S  S  D  S  A  N  G  S  N  Y  F  I  Y  S  V  D  P  I  A   : E  R  Y  K  R  P  E  C  *  K  Q  *  T  *  T  A  F  T  N  N  G  T  T  G  S  L  A  R  C :   V  E  *  C  F  K  G  G  D  T  A  S  E  S  A  N  W  A  R  H  S  K  W  W  T  Y  D  E  L  P  S  N  L  W  R  Q  S  A  V  L  L  *  Q  P  G  N  A  Y  I  V  G  C  T  T  T  S  T  A  P  A  T  F  S  *  A  T  T  P  V  S  A  T  S  A  T  P  V  S  A  A  T  V  A  A  P  T  T  A  T  A  T  S  Y  A  A  A  A  A  A  G  S  T  F  T  S  R  R  C  D  V  K  R  F  S  V  I  S  S  K  *  K  R  F  *  C  *  F  C  S  K  G  L  N  S  *  W  P  E  R  Q  E  M  V  Y  V  L  K  I  I  M  C  F  P  I  *  Q  L  I  F  V  F  Q  N  H  H  V  L  K  Q  H  L  A  Q  V  L  L  L  S  V  S  S  F  I  C  I  L  V  L  L  *  G  H  L  T  F  S  *  N  C  S  N  P  I  L  C  I  C  H  F  V  N  Y  Q  H  D  F  L  H  V  T  N  I  V  G  G  S  F  F  G  H  Q  S  L  I  S  L  S  H  C  S  V  F  T  F  F  E  *  C  F  V  A  C  A  I  V  E  G  K  I  L  M  V  L  L  N  R  *  D  L  P  E  A  D  P  E  R  K  L  W  G  S  R  N  S  I  T  F  I  *  A  F  K  C  I  R  *  I  F  D  R  E  L  G  *  I  L  *  S  P :   E  K  V  </second_frame>
            <third_frame>   S  S  L  S  E  F  I  V  F  P  F  S  H  R  F  A  S  L  F  I  V  S  L  L  H  K  L  F  P  F  L  S  R  M  *  *  S  C  F  L  L  L  L  L  P  F  S  H  F  S  L  L  C  R  S  N  F  K  A  N  R  N  R  :  I  F  :  R  E  L  I  W  D  K  L  V  W  C  L  R  N  L  Q  G  L  S  K  G  F  H  V  L  :  R  K  S  N  L  D  C  D  F  M  V  F  L  L  *  C  S  C  F  D  R  G  K  V  S  L  L  V  D  F  W  F  S  V  G  T  V  L  V  G  V  Y  I  Y  V  W  D  V  G  F  V  P  V  L  L  T  F  G  I  *  R  V  G  V  F  S  V  W  I  W  R  V  C  M  D  K  D  K  S  S  S  S  H  I  G  G  S  L  P  P  S  G  R  Y  S  L  F  S  P  P  G  S  S  S  N  V  K  S  E  Q  P  G  L  A  N  L  P  P  L  G  P  G  N  A  S  E  S  G  H  F  G  H  G  L  S  A  D  S  S  L  F  S  L  D  I  S  R  M  S  D  N  P  P  R  K  F  G  H  R  R  A  H  S  E  I  L  T  L  P  D  D  I  S  F  D  S  D  L  G  V  V  G  L  D  G  P  S  L  S  D  E  T  E  E  D  I  L  S  M  Y  L  D  M  D  K  F  N  S  S  T  L  S  S  E  F  Q  V  G  E  S  S  S  A  A  P  G  S  S  Q  T  T  A  M  A  S  G  T  N  K  F  A  P  T  V  S  E  K  P  R  V  R  H  Q  H  S  Q  S  M  D  G  S  T  T  I  K  P  E  M  L  M  S  G  V  E  E  P  S  S  A  E  T  K  K  A  T  S  A  A  K  L  A  E  L  A  L  I  D  P  K  R  A  K  R :   I  W  A  N  R  Q  S  A  A  R  S  K  E  R  K  M  R  Y  I  A  E  L  E  R  K  V  Q  T  L  Q  T  E  A  T  T  L  S  T  Q  L  T  L  L  Q  :  R  D  T  N  G  L  N  A  E  N  S  E  L  K  L  R  L  Q  T  M  E  Q  Q  V  H  L  Q  D   : A  L  N  D  A  L  K  E  E  I  Q  H  L  K  V  L  T  G  Q  G  I  A  N  G  G  P  M  M  N  F  P  A  T  F  G  G  N  Q  Q  F  Y  S  N  N  Q  A  M  H  T  L  L  A  A  Q  Q  L  Q  Q  L  Q  L  H  S  H  K  Q  Q  H  Q  F  Q  Q  H  Q  L  H  Q  F  Q  Q  Q  Q  L  Q  H  Q  Q  Q  Q  Q  Q  P  L  M  Q  Q  Q  Q  Q  Q  D  Q  L  S  Q  A  G  D  V  M  S  R  G  S  L  S  S  P  Q  N  E  N  A  S  D  V  S  S  V  A  K  D  *  T  A  D  G  Q  R  D  R  R  W  C  M  F  *  K  S  S  C  V  F  P  S  S  S  S  F  L  C  F  K  I  I  T  C  *  N  N  I  *  L  R  F  S  C  F  Q  L  A  P  S  S  A  F  *  Y  F  C  R  V  I  *  L  L  V  E  I  V  Q  I  P  F  Y  A  Y  V  I  L  S  T  I  N  M  I  F  F  M  L  P  I  L  L  V  V  V  F  L  D  I  N  H  L  Y  L  S  H  T  V  Q  C  S  H  F  S  N  N  V  L  W  L  A  R  S  W  R  V  K  F  S  W  C  S  S  I  G  R  I  Y  Q  R  R  I  Q  S  V  N  Y  G  V  Q  G  T  P  *  L  L  S  R  P  L  N  V  F  V  K  Y  L  I  V  N  L  V  K  Y  C  N  P   : Q  K  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75194" stop="74467"/>
                    <exon start="70542" stop="70410"/>
                    <exon start="70156" stop="70072"/>
                    <exon start="69017" stop="68620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1341</number_coding_nucleotides>
                  <number_encoded_amino_acids>447</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVGVFSVWIWRVCMDKDKSSSSHIGGSLPPSGRYSLFSPPGSSSNVKSEQPGLANLPPLGPGNASESGHFGHGLSADSSLFSLDISRMSDNPPRKFGHRRAHSEILTLPDDISFDSDLGVVGLDGPSLSDETEEDILSMYLDMDKFNSSTLSSEFQVGESSSAAPGSSQTTAMASGTNKFAPTVSEKPRVRHQHSQSMDGSTTIKPEMLMSGVEEPSSAETKKATSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSTQLTLLQRDTNGLNAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQGIANGGPMMNFPATFGGNQQFYSNNQAMHTLLAAQQLQQLQLHSHKQQHQFQQHQLHQFQQQQLQHQQQQQQPLMQQQQQQDQLSQAGDVMSRGSLSSPQNENASDVSSVAKD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68436" stop="68161"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLVEIVQIPFYAYVILSTINMIFFMLPILLVVVFLDINHLYLSHTVQCSHFSNNVLWLARSWRVKFSWCSSIGRIYQRRIQSVNYGVQGTP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75873" stop="75793"/>
                    <exon start="75577" stop="75572"/>
                    <exon start="75518" stop="75444"/>
                    <exon start="75374" stop="75330"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SCFLLLLLPFSHFSLLCRSNFKANRNRIFRELIWDKLVWCLRNLQGLSKGFHVLRKSNLDCDFMVFLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="74519" e_stop="74467"/>
            <exon e_start="70542" e_stop="70522"/>
            <exon e_start="68727" e_stop="68304"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.943"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="74519" e_stop="74467" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74466" i_stop="70543" i_length="3924"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="70542" e_stop="70522" e_length="21"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="70521" i_stop="68728" i_length="1794"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="68727" e_stop="68304" e_length="424"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74519" stop="74467"/>
              <exon start="70542" stop="70522"/>
              <exon start="68727" stop="68304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337173" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCTGCAAAGCTTGCTGAACTTGCTCTTATTGATCCTAAACGTGCCAAGCG : GATTTGGGCCAACAGGCAGTC : CAGCAGCAGGATCAACTTTCACAAGCCGGAGATGTGATGTCAAGAGGTTCTCTGTCATCTCCTCAAAATGAAAACGCTTCTGATGTTAGTTCTGTAGCAAAGGATTGAACAGCTGATGGCCAGAGAGACAGGAGATGGTGTATGTTTTAAAAATCATCATGTGTTTTCCCATCTAGCAGCTCATTTTTGTGTTTCAAAATCATCACGTGTTGAAACAACATCTAGCTCAGGTTCTCTTGCTTTCAGTTAGCTCCTTCATCTGCATTTTAGTACTTTTGTAGGGTCATTTGACTTTTAGTTGAAATTGTTCAAATCCCATTCTATGCATATGTCATTTTGTCAACTATCAACATGATTTTCTTCATGTTACCAATATTGTTGGTGGTAGTTTTTTTGGACATCAATCACTTATATCTCTCTCACA</gDNA_template>
            <first_frame> S  A  A  K  L  A  E  L  A  L  I  D  P  K  R  A  K  R :   I  W  A  N  R  Q  S :   S  S  R  I  N  F  H  K  P  E  M  *  C  Q  E  V  L  C  H  L  L  K  M  K  T  L  L  M  L  V  L  *  Q  R  I  E  Q  L  M  A  R  E  T  G  D  G  V  C  F  K  N  H  H  V  F  S  H  L  A  A  H  F  C  V  S  K  S  S  R  V  E  T  T  S  S  S  G  S  L  A  F  S  *  L  L  H  L  H  F  S  T  F  V  G  S  F  D  F  *  L  K  L  F  K  S  H  S  M  H  M  S  F  C  Q  L  S  T  *  F  S  S  C  Y  Q  Y  C  W  W  *  F  F  W  T  S  I  T  Y  I  S  L  T </first_frame>
            <second_frame>  Q  L  Q  S  L  L  N  L  L  L  L  I  L  N  V  P  S   : G  F  G  P  T  G  S   : P  A  A  G  S  T  F  T  S  R  R  C  D  V  K  R  F  S  V  I  S  S  K  *  K  R  F  *  C  *  F  C  S  K  G  L  N  S  *  W  P  E  R  Q  E  M  V  Y  V  L  K  I  I  M  C  F  P  I  *  Q  L  I  F  V  F  Q  N  H  H  V  L  K  Q  H  L  A  Q  V  L  L  L  S  V  S  S  F  I  C  I  L  V  L  L  *  G  H  L  T  F  S  *  N  C  S  N  P  I  L  C  I  C  H  F  V  N  Y  Q  H  D  F  L  H  V  T  N  I  V  G  G  S  F  F  G  H  Q  S  L  I  S  L  S   </second_frame>
            <third_frame>   S  C  K  A  C  *  T  C  S  Y  *  S  *  T  C  Q  A  :  D  L  G  Q  Q  A  V  :  Q  Q  Q  D  Q  L  S  Q  A  G  D  V  M  S  R  G  S  L  S  S  P  Q  N  E  N  A  S  D  V  S  S  V  A  K  D  *  T  A  D  G  Q  R  D  R  R  W  C  M  F  *  K  S  S  C  V  F  P  S  S  S  S  F  L  C  F  K  I  I  T  C  *  N  N  I  *  L  R  F  S  C  F  Q  L  A  P  S  S  A  F  *  Y  F  C  R  V  I  *  L  L  V  E  I  V  Q  I  P  F  Y  A  Y  V  I  L  S  T  I  N  M  I  F  F  M  L  P  I  L  L  V  V  V  F  L  D  I  N  H  L  Y  L  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0047K24.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="82546" PGL_stop="77335"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82546" e_stop="82527"/>
            <exon e_start="82419" e_stop="82201"/>
            <exon e_start="78967" e_stop="78861"/>
            <exon e_start="77656" e_stop="77335"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="82546" e_stop="82527" e_length="20"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.832">
            <gDNA_intron_boundary i_start="82526" i_stop="82420" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82419" e_stop="82201" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.980">
            <gDNA_intron_boundary i_start="82200" i_stop="78968" i_length="3233"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="78967" e_stop="78861" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78860" i_stop="77657" i_length="1204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77656" e_stop="77335" e_length="322"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82546" stop="82527"/>
              <exon start="82419" stop="82201"/>
              <exon start="78967" stop="78861"/>
              <exon start="77656" stop="77335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGTTACAAATGGTGTAAAG : GTCCGTGCTTCTTCTGTGTTCGTCCCAGAGTTCAGTACCATTCAAGATGAATATGAGAAGAGTTTTTTTGCTTATTCTATCCGCATGTCTCTTTCACCTGAAGGATGCATAATGAATGGGATGGCCTTCAATTCCTGCCAACTATATTGTAGACATTGGATCATCCGCTGCAATGATAATGTTGTAGATAATGTAAATGGAGAAGCGGTGATAGGAAAG : TTTCCACTGCTACGACCCGGGGAGGAAGAATTTGTCTATCAGAGTTGCTCATCTCAACAAGATTCACCAGGCTCGATTGAAGGATCTTTTACTTTTGTACCTGGAAG : ATTAGCAGATCCAAAAGGTAGTCCGTTCGAAGCTGTGGTGTCAAGATTTCCCCTTGTGATGCCGGACTATATTTTCTGATGGAACTCATTCGAAGTCCACTCTTCTGTGTTATGCGGTTGGTTTTGTAGTGAACAAGCACTATCTTTACTCCTGTTAGTCTATGTGTGATTTTCATCCATCCTCCCTTCCTGTTGTGCTTCATTGGTTTACTATTATGTTCTTTTCCTTTGAGAAGAAAGTTCTTTGAACTCCGGCCAACGTAGTACTGTCTTGTAGAAAAGGATATACAACATGTAATACCAAACTTCGCGTTGTGTCGAA</gDNA_template>
            <first_frame> L  L  Q  M  V  *  R :   S  V  L  L  L  C  S  S  Q  S  S  V  P  F  K  M  N  M  R  R  V  F  L  L  I  L  S  A  C  L  F  H  L  K  D  A  *  *  M  G  W  P  S  I  P  A  N  Y  I  V  D  I  G  S  S  A  A  M  I  M  L  *  I  M  *  M  E  K  R  *  *  E  S :   F  H  C  Y  D  P  G  R  K  N  L  S  I  R  V  A  H  L  N  K  I  H  Q  A  R  L  K  D  L  L  L  L  Y  L  E   : D  *  Q  I  Q  K  V  V  R  S  K  L  W  C  Q  D  F  P  L  *  C  R  T  I  F  S  D  G  T  H  S  K  S  T  L  L  C  Y  A  V  G  F  V  V  N  K  H  Y  L  Y  S  C  *  S  M  C  D  F  H  P  S  S  L  P  V  V  L  H  W  F  T  I  M  F  F  S  F  E  K  K  V  L  *  T  P  A  N  V  V  L  S  C  R  K  G  Y  T  T  C  N  T  K  L  R  V  V  S   </first_frame>
            <second_frame>  C  Y  K  W  C  K   : G  P  C  F  F  C  V  R  P  R  V  Q  Y  H  S  R  *  I  *  E  E  F  F  C  L  F  Y  P  H  V  S  F  T  *  R  M  H  N  E  W  D  G  L  Q  F  L  P  T  I  L  *  T  L  D  H  P  L  Q  *  *  C  C  R  *  C  K  W  R  S  G  D  R  K   : V  S  T  A  T  T  R  G  G  R  I  C  L  S  E  L  L  I  S  T  R  F  T  R  L  D  *  R  I  F  Y  F  C  T  W  K  :  I  S  R  S  K  R  *  S  V  R  S  C  G  V  K  I  S  P  C  D  A  G  L  Y  F  L  M  E  L  I  R  S  P  L  F  C  V  M  R  L  V  L  *  *  T  S  T  I  F  T  P  V  S  L  C  V  I  F  I  H  P  P  F  L  L  C  F  I  G  L  L  L  C  S  F  P  L  R  R  K  F  F  E  L  R  P  T  *  Y  C  L  V  E  K  D  I  Q  H  V  I  P  N  F  A  L  C  R  </second_frame>
            <third_frame>   V  T  N  G  V  K  :  V  R  A  S  S  V  F  V  P  E  F  S  T  I  Q  D  E  Y  E  K  S  F  F  A  Y  S  I  R  M  S  L  S  P  E  G  C  I  M  N  G  M  A  F  N  S  C  Q  L  Y  C  R  H  W  I  I  R  C  N  D  N  V  V  D  N  V  N  G  E  A  V  I  G  K  :  F  P  L  L  R  P  G  E  E  E  F  V  Y  Q  S  C  S  S  Q  Q  D  S  P  G  S  I  E  G  S  F  T  F  V  P  G  R :   L  A  D  P  K  G  S  P  F  E  A  V  V  S  R  F  P  L  V  M  P  D  Y  I  F  *  W  N  S  F  E  V  H  S  S  V  L  C  G  W  F  C  S  E  Q  A  L  S  L  L  L  L  V  Y  V  *  F  S  S  I  L  P  S  C  C  A  S  L  V  Y  Y  Y  V  L  F  L  *  E  E  S  S  L  N  S  G  Q  R  S  T  V  L  *  K  R  I  Y  N  M  *  Y  Q  T  S  R  C  V  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82544" stop="82527"/>
                    <exon start="82419" stop="82201"/>
                    <exon start="78967" stop="78861"/>
                    <exon start="77656" stop="77578"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTNGVKVRASSVFVPEFSTIQDEYEKSFFAYSIRMSLSPEGCIMNGMAFNSCQLYCRHWIIRCNDNVVDNVNGEAVIGKFPLLRPGEEEFVYQSCSSQQDSPGSIEGSFTFVPGRLADPKGSPFEAVVSRFPLVMPDYIF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="84375" PGL_stop="82620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84375" e_stop="84080"/>
            <exon e_start="83249" e_stop="82620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="0.976"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="84375" e_stop="84080" e_length="296"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="84079" i_stop="83250" i_length="830"/>
          </intron>
          <exon e_serial="2" e_score="0.992">
            <gDNA_exon_boundary e_start="83249" e_stop="82620" e_length="630"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84375" stop="84080"/>
              <exon start="83249" stop="82620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323558" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACCAGTTCCTCTCTTCTCTTTCATCTTAACTCACTTTGGCGTTTCTATTATCTCCGGCGGCCGGCGGTAGACGGCGGAGGAAGAGAAAAGATGGATGTAGAAAGGTTAGGTGGGCTGTCGATGCATATAATCTTATCAAAATTGACGCCTCAAGATGCTGCATCTGTGGCTTGTGTTAGCAAAAGGTTTAGGAATTGGAGCTCCGATGATTTGCTATGGTCCAAATTCTGTGCCGATGATCTTGATTTATCTTCTCCAATTGACCCACTTGGAAATCCTATGCCGTCTTTCAAG : GCATCTTATCAAACATGGCGGGAGGATTTCAATCAATACCCATGGCCATTGATTACTCGCGTTAAAAGATGTTGGGACAGGCTAAAAGAGTGGCTAGCCATAAATTTCCCTGAAGGTTTGTCTACATTGCGTAAAGGTGCATCTGAGGAAGAAATACTGGAGTTGGAGAAGAGTTTGAAAGTAAAACTGCCTCTACCTACTAGGGTTCTCTACCGGTTTTATGATGGTCAAGAACTATCAAGTGAGGAGTCCAGTGGGAGCGCGCCTGGGAGTTTATTAGGTCTCATGGGAGGTTACTCCTTTTATGACCATCTGGTGAATGTATCTTTGTTGCCTTTACATCAAATGATAATAGAAACGAAAGAAACTATCAGACATATCGGACTCGGCAATCGATCTAAGTATGTTGTTGTAGCGGCCTCTTGTGGTCACAATGAAAAGGTTTTCTTTCTGAACTGTTCCACTGGTCAACTTAATGTTGGTACAAGGAATCTCACAACTGAAGGAGAAGTGATTCCTTGTGTACCGAGTGCCTTGATAAGTTCAGTGCATAATGTAAAAGCAACTCAACCCCAAGATGCCATGCTATTGTGGCTAGAGGAACATGTCCGTCGCTTGCAACATGGAATG</gDNA_template>
            <first_frame> K  P  V  P  L  F  S  F  I  L  T  H  F  G  V  S  I  I  S  G  G  R  R  *  T  A  E  E  E  K  R  W  M  *  K  G  *  V  G  C  R  C  I  *  S  Y  Q  N  *  R  L  K  M  L  H  L  W  L  V  L  A  K  G  L  G  I  G  A  P  M  I  C  Y  G  P  N  S  V  P  M  I  L  I  Y  L  L  Q  L  T  H  L  E  I  L  C  R  L  S  R :   H  L  I  K  H  G  G  R  I  S  I  N  T  H  G  H  *  L  L  A  L  K  D  V  G  T  G  *  K  S  G  *  P  *  I  S  L  K  V  C  L  H  C  V  K  V  H  L  R  K  K  Y  W  S  W  R  R  V  *  K  *  N  C  L  Y  L  L  G  F  S  T  G  F  M  M  V  K  N  Y  Q  V  R  S  P  V  G  A  R  L  G  V  Y  *  V  S  W  E  V  T  P  F  M  T  I  W  *  M  Y  L  C  C  L  Y  I  K  *  *  *  K  R  K  K  L  S  D  I  S  D  S  A  I  D  L  S  M  L  L  *  R  P  L  V  V  T  M  K  R  F  S  F  *  T  V  P  L  V  N  L  M  L  V  Q  G  I  S  Q  L  K  E  K  *  F  L  V  Y  R  V  P  *  *  V  Q  C  I  M  *  K  Q  L  N  P  K  M  P  C  Y  C  G  *  R  N  M  S  V  A  C  N  M  E   </first_frame>
            <second_frame>  N  Q  F  L  S  S  L  S  S  *  L  T  L  A  F  L  L  S  P  A  A  G  G  R  R  R  R  K  R  K  D  G  C  R  K  V  R  W  A  V  D  A  Y  N  L  I  K  I  D  A  S  R  C  C  I  C  G  L  C  *  Q  K  V  *  E  L  E  L  R  *  F  A  M  V  Q  I  L  C  R  *  S  *  F  I  F  S  N  *  P  T  W  K  S  Y  A  V  F  Q   : G  I  L  S  N  M  A  G  G  F  Q  S  I  P  M  A  I  D  Y  S  R  *  K  M  L  G  Q  A  K  R  V  A  S  H  K  F  P  *  R  F  V  Y  I  A  *  R  C  I  *  G  R  N  T  G  V  G  E  E  F  E  S  K  T  A  S  T  Y  *  G  S  L  P  V  L  *  W  S  R  T  I  K  *  G  V  Q  W  E  R  A  W  E  F  I  R  S  H  G  R  L  L  L  L  *  P  S  G  E  C  I  F  V  A  F  T  S  N  D  N  R  N  E  R  N  Y  Q  T  Y  R  T  R  Q  S  I  *  V  C  C  C  S  G  L  L  W  S  Q  *  K  G  F  L  S  E  L  F  H  W  S  T  *  C  W  Y  K  E  S  H  N  *  R  R  S  D  S  L  C  T  E  C  L  D  K  F  S  A  *  C  K  S  N  S  T  P  R  C  H  A  I  V  A  R  G  T  C  P  S  L  A  T  W  N  </second_frame>
            <third_frame>   T  S  S  S  L  L  F  H  L  N  S  L  W  R  F  Y  Y  L  R  R  P  A  V  D  G  G  G  R  E  K  M  D  V  E  R  L  G  G  L  S  M  H  I  I  L  S  K  L  T  P  Q  D  A  A  S  V  A  C  V  S  K  R  F  R  N  W  S  S  D  D  L  L  W  S  K  F  C  A  D  D  L  D  L  S  S  P  I  D  P  L  G  N  P  M  P  S  F  K  :  A  S  Y  Q  T  W  R  E  D  F  N  Q  Y  P  W  P  L  I  T  R  V  K  R  C  W  D  R  L  K  E  W  L  A  I  N  F  P  E  G  L  S  T  L  R  K  G  A  S  E  E  E  I  L  E  L  E  K  S  L  K  V  K  L  P  L  P  T  R  V  L  Y  R  F  Y  D  G  Q  E  L  S  S  E  E  S  S  G  S  A  P  G  S  L  L  G  L  M  G  G  Y  S  F  Y  D  H  L  V  N  V  S  L  L  P  L  H  Q  M  I  I  E  T  K  E  T  I  R  H  I  G  L  G  N  R  S  K  Y  V  V  V  A  A  S  C  G  H  N  E  K  V  F  F  L  N  C  S  T  G  Q  L  N  V  G  T  R  N  L  T  T  E  G  E  V  I  P  C  V  P  S  A  L  I  S  S  V  H  N  V  K  A  T  Q  P  Q  D  A  M  L  L  W  L  E  E  H  V  R  R  L  Q  H  G  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0047K24.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84373" stop="84080"/>
                    <exon start="83249" stop="82620"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>924</number_coding_nucleotides>
                  <number_encoded_amino_acids>308</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSSLLFHLNSLWRFYYLRRPAVDGGGREKMDVERLGGLSMHIILSKLTPQDAASVACVSKRFRNWSSDDLLWSKFCADDLDLSSPIDPLGNPMPSFKASYQTWREDFNQYPWPLITRVKRCWDRLKEWLAINFPEGLSTLRKGASEEEILELEKSLKVKLPLPTRVLYRFYDGQELSSEESSGSAPGSLLGLMGGYSFYDHLVNVSLLPLHQMIIETKETIRHIGLGNRSKYVVVAASCGHNEKVFFLNCSTGQLNVGTRNLTTEGEVIPCVPSALISSVHNVKATQPQDAMLLWLEEHVRRLQHGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 50 chains have been computed
$ 
$ memory statistics:
$ 48776 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 2869 bytes was the average size of a spliced alignment
$ 19448 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1620 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 65 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-17 02:26:44
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