<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 20:55:03"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347640" ref_strand="+" ref_description="SGN-E347640 [cTOF-26-P3]">
      <seq>ccaccaccattccaaatcttttccagtatcgacttctcatttgcttctttttcatcagtttagatacagttattgtctttatatagtctttgtgtttttgttgttgtgattcttagttgtttttttttttgtagaaattcacttgtgtccctcagtttgtggtaaattttgtttctttgcttcatttatcagctcaaatctatgcgcctctgcctatgatggcattaaatatactttgagtatttcactatgaaacaacttgtaatctgaggcttgaggctttatcaattccttgtgtattcgtgaacttttgcgatccatctttgcttgtttaattaatgggtctgatatccttttgctaaaggaagaagctttatataatacataagaatttcaaaatgttactactttcgctgactttctttttgaaattcattatgcctctgcttttccagtagtgagagtcttggttattattatatatgtattccgcagggcagttgtcaagattatgattttgaaatagcttgctttggatcctatttaatttgctaattcaatgcttatagtcatgttgcatttttggcggatggtttataaagaatttgatatgagggatacacttgtttatcttaactatgaactcgtcataatctttaccattttcagtttttccctcatttggtcattgncatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13" stop="1314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="313" g_stop="1014" g_length="702"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="701" r_length="701" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E347640" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="313" e_stop="1014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTTAACCATTTTCAGTTTTTCCCTCATTTGGTCATTGCAATGATGAT</genome_strand>
        <mrna_strand>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTT-ACCATTTTCAGTTTTTCCCTCATTTGGTCATTGNCATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355710" ref_strand="+" ref_description="SGN-E355710 [cLHT-1-H19]">
      <seq>aaatctctctctttctattggaaaaaaatgttgattctttatcccaaagttaagataattaactgttagatagtactataagtctaacaactcctagaactaatttttttgagtgtcaatggcaagttcattgaacagtggtttctctgtttctggcccctgtttcaatttcagagccaaagggtctgctcatcattgctattcaaatggaaatttgcaacttaaagatttaacatctagagaatttctaggcaaatccttgaatgtatcagaccatatacaggcacaagaagaaatttgtgttgaaagtggtcagggatggtggaagaagacacttaaacctaacatggtagagatcaattcagcacaacaacttgttgattcattgttgaaggctggtgatagattagtcataattgacttctactctcctgattgtgcaggttgcaagactttacatcctaagatgtgtgagttagctgaatcaaatcccaatgccatattcctaaaagtaaactatgaagaactgaaaagcatgtgcaatgttcttcatatacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="-" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4435" stop="3022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4135" g_stop="3853" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3852" i_stop="3764" i_length="89">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3763" g_stop="3581" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="466" r_length="183" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3580" i_stop="3411" i_length="170">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3410" g_stop="3322" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="555" r_length="89" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="-" ref_id="SGN-E355710" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4135" e_stop="3853"/>
          <exon e_start="3763" e_stop="3581"/>
          <exon e_start="3410" e_stop="3322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTCTCTATCTATTGGAAAAAAAAGTTGATTCTTTATCCCAAAGTTAAGGTAATTAACTGTTAGATAGTACTATAAGTCTAACAACTCCTAGAACTAATTTCTTTTAGTGTCAATGGCAAGTTCATTGAGCAGTGGTTTCTCTGTTTCTGGCCCCTGTTTCAATTCCAGAGCCAAAGGGTCTGCTCATCATTGCTATTCAAATGGAAATTTGCAACTTAAAGATTTAACATCTAGAGAATTTCTAGGCAAATCCTTGAATGTATCAGACCATATACAGGTGCTTTTTATGTTTCATTCTTGTATTTTTCCCTTCTTTTTTTGAGTTTTCACTTTTGAGATCAGCAAGTGTTTTGCCAAATGTTTCAGGCACTAGAAGAAATTTGTGTTGAAAGTGGTCAGGGATGGTGGGAGAAGACACTTAAACCCAACATGGTAGAGATCAATTCAGCACAACAACATGTTGATTCATTGTTAAAGGCTGGTGATAGATTAGTCGTAATTGACTTCTACTCTCCTGATTGTGGAGGTTGCAAGACTTCACATCCAAAGGTATGGTACCAAAATGATCAAGGTATTAGTTTTTTGCAGCTGTCGTAGTCTTGGTTGATAGAATTACCTGATATTTTTGTTGGTTGAGGCGTGCCCAAGCTGAATCACACACCACAGCAGTTCTGAATGCAAATTCTGACACCTGATAATAACATCACTATTGTTACTTGATGTGTGAGTCAGCTGAATCAAATCCCAATGCCATATTCCTAAAAGTAAACTATGAAGAACTGAAAAGCATGTGCAATGTTCTGCATAT</genome_strand>
        <mrna_strand>AAATCTCTCTCTTTCTATTGGAAAAAAATGTTGATTCTTTATCCCAAAGTTAAGATAATTAACTGTTAGATAGTACTATAAGTCTAACAACTCCTAGAACTAATTTTTTTGAGTGTCAATGGCAAGTTCATTGAACAGTGGTTTCTCTGTTTCTGGCCCCTGTTTCAATTTCAGAGCCAAAGGGTCTGCTCATCATTGCTATTCAAATGGAAATTTGCAACTTAAAGATTTAACATCTAGAGAATTTCTAGGCAAATCCTTGAATGTATCAGACCATATACAG.........................................................................................GCACAAGAAGAAATTTGTGTTGAAAGTGGTCAGGGATGGTGGAAGAAGACACTTAAACCTAACATGGTAGAGATCAATTCAGCACAACAACTTGTTGATTCATTGTTGAAGGCTGGTGATAGATTAGTCATAATTGACTTCTACTCTCCTGATTGTGCAGGTTGCAAGACTTTACATCCTAAG..........................................................................................................................................................................ATGTGTGAGTTAGCTGAATCAAATCCCAATGCCATATTCCTAAAAGTAAACTATGAAGAACTGAAAAGCATGTGCAATGTTCTTCATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243213" ref_strand="+" ref_description="SGN-E243213 [cLEE-2-C22]">
      <seq>tggagttgctgaattatcttgaaacaagaatgccaaataagtcaaaaaacccaaaaaacagaaaaaaaaaaaaaaacagaaaaaagagcaggaaagaggtacaactttagttattgcagacagtattatatagcttatggcaccagggttgttgcactgatggtgtaaagattcgtttatactgtcagtgaatataagttaaatctatcgcataaaatactattagtatgttaatgttttgttgctttttgtttctgggcaacttattagatggtgatgttgaagttatataaatagtactgaatggtgtaagcatgaaactgtgggagatcaaaagttggtgactgtgatcttttcactgttgtttttttctatggaaaaactaaactctattccatcaaaaaaaaaaaaaaataaaataaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12186" stop="13184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12486" g_stop="12881" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="419"/>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E243213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.930" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12486" e_stop="12881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAGTTGCTGAATTATCTTGAAACAAGAATGCCAAATAAGTCAAAAAACCCAAAAAACAGAAAAAAAAAAAAAAACAGAAAAAAGAGCAGGAAAGAGGTACAACTTTAGTTATTGCAGACAGTATTATATAGCTTATGGCACCAGGGTTGTTGCACTGATGGTGTAAAGATTCGTTTATACTGTCAGTGAATATAAGTTAAATCTATCGCATAAAATACTATTAGTATGTTAATGTTTTGTTGCTTTTTGTTTCTGGGCAACTTATTAGATGGTGATGTTGAAGTTATATAAATAGTACTGAATGGTGTAAGCATGAAACTGTGGGAGATCAAAAGTTGGTGACTGTGATCTTTTCACTGTTGTTTTTTTCTATGGAAAAACTAAACTCTATTCC</genome_strand>
        <mrna_strand>TGGAGTTGCTGAATTATCTTGAAACAAGAATGCCAAATAAGTCAAAAAACCCAAAAAACAGAAAAAAAAAAAAAAACAGAAAAAAGAGCAGGAAAGAGGTACAACTTTAGTTATTGCAGACAGTATTATATAGCTTATGGCACCAGGGTTGTTGCACTGATGGTGTAAAGATTCGTTTATACTGTCAGTGAATATAAGTTAAATCTATCGCATAAAATACTATTAGTATGTTAATGTTTTGTTGCTTTTTGTTTCTGGGCAACTTATTAGATGGTGATGTTGAAGTTATATAAATAGTACTGAATGGTGTAAGCATGAAACTGTGGGAGATCAAAAGTTGGTGACTGTGATCTTTTCACTGTTGTTTTTTTCTATGGAAAAACTAAACTCTATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704833" ref_strand="+" ref_description="SGN-E704833 [FA25BF01]">
      <seq>attttgctaacgtgcgccgaccagtccgtcaacggggatatattacgtttatattttgattggtgattccgagttccgaccggtatatatcggtcggcggctgacttggtgaaacagaaatggccgaagtttctagattgattgctctgctttcttgttgtaccgtgctcagtgtaaccgtctgttgctaaatgaattggattggatgactacgtgatcagcaagatgatgctgtgctgaactgacagccataactttaattattgtagttttttgatccctgtagtggagcgggaagtaatagtaatggaagttcttcaataacagttttgggagagctagggttgtattagaaccctaatttttatttttttttgtgtaatggttatggagaagaatgagactgtgaggacaggggatgggtttattgacaggagtaaagttaggattttgctgtgtgatagcgatgccaaaagctcggaggaagtttttactctcttgtgcaaatgttcttatcaagtgatatcagtgaggtcacccagacaggtgattgatgcattgaatgcagaaggacctcatatcgatctcatcctttcagaagttgaccttcctatgtctaaaggatttaagatgttgaagcacattatgagggataagcagttgcgacacattccagtgatcatgatgtcatcgcaagatgaagtctctattgttattaagtgcctgaaatttggagccgctgactacctggtaaagcctctcagaactaatgagctattgaacttgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="22878" stop="25468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23178" g_stop="23697" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23698" i_stop="24811" i_length="1114">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24812" g_stop="24973" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="682" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24974" i_stop="25060" i_length="87">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25061" g_stop="25168" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="790" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E704833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E704833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23178" e_stop="23697"/>
          <exon e_start="24812" e_stop="24973"/>
          <exon e_start="25061" e_stop="25168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGCTAACGTGCGCCGACCAGTCCGTCAACGGGGATATATTACGTTTATATTTTGATTGGTGATTCCGAGTTCCGACCGGTATATATCGGTCGGCGGCTGACTTGGTGAAACAGAAATGGCCGAAGTTTCTAGATTGATTGCTCTGCTTTCTTGTTGTACCGTGCTCAGTGTAACCGTCTGTTGCTAAATGAATTGGATTGGATGACTACGTGATCAGCAAGATGATGCTGTGCTGAACTGACAGCCATAACTTTAATTATTGTAGTTTTTTGATCCCTGTAGTGGAGCGGGAAGTAATAGTAATGGAAGTTCTTCAATAACAGTTTTGGGAGAGCTAGGGTTGTATTAGAACCCTAATTTTTATTTTTTTTTGTGTAATGGTTATGGAGAAGAATGAGACTGTGAGGACAGGGGATGGGTTTATTGACAGGAGTAAAGTTAGGATTTTGCTGTGTGATAGCGATGCCAAAAGCTCGGAGGAAGTTTTTACTCTCTTGTGCAAATGTTCTTATCAAGGTAATATCCAATTCTTATGATTAATTCACATTCTGGTGTTTGTAGTTTCTGAATTGGTTTTTATATGATAAAATTCAGATTGCTAATTGATATCATTTGCTTGAGCTTGCCTTCTTTTGTTAATGCATCTTTTGTTTGACAAATAGCCCCCTGTGAATTGTGTGAAAGTAGGATACTTCAATTTCGGGGGTCAGAGAGTTTTAAGCACCTTAGGCGCTCTTCAGAGTGTGATTTCTTTGACTTGAATTTAAGTTTGAAGCATGAGATAATTATCAAAAAAAAAAAAAAGTTTGAAGCATGAGATTGATTTCCATGTATTTTGTTACTTCTCCTATCGGCCTGTCTTTTGTCATTTTAGGGGGAATAAGTGTTCTTTCTATTCGAATCCGATGGGTCGTCAACACAGGAATGTGGTGCATTTTGGGACTTATTGTTTACACATTGCATAGAGACAATTTCTAAAGGATATACTTAAAATTCTCAAATAATATCTTTCTGGGACGAGTCATGTTTTAGAGCACAGTAAGCTTCACAAACCGTTGTAGTTCTCCCACAAATTCTATTCGTTTTTGAATAACCTATGATCCATTATGATAGCAATAGAAGATTCTCATCTTTAACTTATTGCGGAGTTTTATTTTATTTGTTTATCTTGATAACGATGTGTCTATGCTAACTGATCACCTCTTATCAGCAAAGCAAGTAGCTAGGTTGCTAGGCAGATGAGAAAAATTCACCTTGTGTCACCTTTGTTGGGATATGAACCTTGGTTTTCAAGGTCTTTACTCTAGATTTTTGTTTGAATATGGGGGAAGTTTAGTTTTGCAACTTGTTAGAGGTTCAATATCCAGAGTTCTTCTCCTCCCCTTCCCTCCCAAAACCCGGAGAAAAACAATAGAAAAAATGCATGAAGGAGAAAAAATGAAAAACGTATAATGGAAGAAAACCTTAAGGGGGGAAAATTGGGGATTAGGGGCGGCTGAGAGGAGTTGATGTTAGTAAGTTACTCTTGTTTTCTGATGTTAGTTCAATCTTCAGTTGCTTGCTACACAGTAGTACTAGACTCAGCTTTTTAATGAGCCTACGACTAATTGTGATGATTGTTGCATTGCAGTGATATCAGTGAGGTCACCCAGACAGGTGATTGATGCATTGAATGCAGAAGGACCTCATATCGATCTCATCCTTTCAGAAGTTGACCTTCCTATGTCTAAAGGATTTAAGATGTTGAAGCACATTATGAGGGATAAGCAGTTGCGACACATTCCAGTGATCAGTAAGCTTAAGTTTCTGTAAATTGCACATTCCAGTGAAATGTACTTATGAGTGTGGTCAAAGATACTGTTTCATTTTCTTTTTGTAGTGATGTCATCGCAAGATGAAGTCTCTATTGTTATTAAGTGCCTGAAATTTGGAGCCGCTGACTACCTGGTAAAGCCTCTCAGAACTAATGAGCTATTGAACTTGTGGA</genome_strand>
        <mrna_strand>ATTTTGCTAACGTGCGCCGACCAGTCCGTCAACGGGGATATATTACGTTTATATTTTGATTGGTGATTCCGAGTTCCGACCGGTATATATCGGTCGGCGGCTGACTTGGTGAAACAGAAATGGCCGAAGTTTCTAGATTGATTGCTCTGCTTTCTTGTTGTACCGTGCTCAGTGTAACCGTCTGTTGCTAAATGAATTGGATTGGATGACTACGTGATCAGCAAGATGATGCTGTGCTGAACTGACAGCCATAACTTTAATTATTGTAGTTTTTTGATCCCTGTAGTGGAGCGGGAAGTAATAGTAATGGAAGTTCTTCAATAACAGTTTTGGGAGAGCTAGGGTTGTATTAGAACCCTAATTTTTATTTTTTTTTGTGTAATGGTTATGGAGAAGAATGAGACTGTGAGGACAGGGGATGGGTTTATTGACAGGAGTAAAGTTAGGATTTTGCTGTGTGATAGCGATGCCAAAAGCTCGGAGGAAGTTTTTACTCTCTTGTGCAAATGTTCTTATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATCAGTGAGGTCACCCAGACAGGTGATTGATGCATTGAATGCAGAAGGACCTCATATCGATCTCATCCTTTCAGAAGTTGACCTTCCTATGTCTAAAGGATTTAAGATGTTGAAGCACATTATGAGGGATAAGCAGTTGCGACACATTCCAGTGATCA.......................................................................................TGATGTCATCGCAAGATGAAGTCTCTATTGTTATTAAGTGCCTGAAATTTGGAGCCGCTGACTACCTGGTAAAGCCTCTCAGAACTAATGAGCTATTGAACTTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424605" ref_strand="-" ref_description="SGN-E424605 [STM-43-H10]">
      <seq>ccagacaggtgattgatgcattgaatgcagaaggacctcatattgatctcatcctttcagaagttgaccttcctatgtctaaaggatttaagatgttgaagtacattatgagggataagcagttgcgacgcattccagtgatcttgatgtcatcacaagatgaagtctctattgttatcaagtgcctgaaatttggagcagctgactacctggtaaagcctctcagaactaatgagctattgaacttgtggacacacatgtggagaagaaggagaatgctcggactagcagagaagaacatcttaagctatgacttcaatttggttgtatcagagcccagtgatcctaatacaaatagcactactcttttatcggatgacaccgacgataagtcaaggaagtgtattaatccagaaatgtgtccctctactatgctgcaagaagaagcaagatataaggtggagaagcaagttcttttaaagttactattgaaagcctttctagcacttttatgtaatcaccaaaattcaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24530" stop="26133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24830" g_stop="24973" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24974" i_stop="25060" i_length="87">
            <donor d_prob="0.981" d_score="0.94"/>
            <acceptor a_prob="0.846" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25061" g_stop="25194" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="278" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25195" i_stop="25576" i_length="382">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25577" g_stop="25833" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="535" r_length="257" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E424605" ref_strand="-">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="24830" e_stop="24973"/>
          <exon e_start="25061" e_stop="25194"/>
          <exon e_start="25577" e_stop="25833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACAGGTGATTGATGCATTGAATGCAGAAGGACCTCATATCGATCTCATCCTTTCAGAAGTTGACCTTCCTATGTCTAAAGGATTTAAGATGTTGAAGCACATTATGAGGGATAAGCAGTTGCGACACATTCCAGTGATCAGTAAGCTTAAGTTTCTGTAAATTGCACATTCCAGTGAAATGTACTTATGAGTGTGGTCAAAGATACTGTTTCATTTTCTTTTTGTAGTGATGTCATCGCAAGATGAAGTCTCTATTGTTATTAAGTGCCTGAAATTTGGAGCCGCTGACTACCTGGTAAAGCCTCTCAGAACTAATGAGCTATTGAACTTGTGGACACACATGTGGAGAAGAAGGAGAATGGCACGTACTTATTCAATCACTTAATCTTTTCTCTGTTTTATTGTTTGCTTTTCAATATCTTTTTATTTTTACTTGAAATATTTATTTATAGCAAGGATATCTGGAAATTTAAGGCAGGGAAGCATGACAGAGACTAGTATAAACAAATCTTTGATGAATATCTTTTCTCTCATCGGTCTAAATATATTTATTGTTACTTGTTCTAATATGAATGGAAACAGTGTTTGAACCCTCACCCAATTTTTGTTGTTTATTTTTGTGTTATTTAGGCTGCATGTGAAGGAAGTTCTCCTTGTACCACTTTTTGATGTTGGTGTTCTTCAAATATTCTATGTCAACATCTCCACAATAATCATTTTATATTTCTCTGTTTCGTGTACAGCTCGGACTAGTAGAGAAGAACATCATAAATTATGACTTTAATCTGGTCGTATCAGAGCCCAGTGATCCCAACACAAATAGCACTACTCTTTTCTCGGATGATACCGATGATAAGTCATGGAAGTGTGTTAATCCAGAAATATGTCCCTCTACTATGCTGCAAGAAGAAGCAAGATGCAAGGTGGAAAAGCAAGTTCTTTTGAAGTTACTTTTGAAAGCGTTTCTAGCACATTCATGTAATCACCAAAATTTAAGTTG</genome_strand>
        <mrna_strand>CCAGACAGGTGATTGATGCATTGAATGCAGAAGGACCTCATATTGATCTCATCCTTTCAGAAGTTGACCTTCCTATGTCTAAAGGATTTAAGATGTTGAAGTACATTATGAGGGATAAGCAGTTGCGACGCATTCCAGTGATCT.......................................................................................TGATGTCATCACAAGATGAAGTCTCTATTGTTATCAAGTGCCTGAAATTTGGAGCAGCTGACTACCTGGTAAAGCCTCTCAGAACTAATGAGCTATTGAACTTGTGGACACACATGTGGAGAAGAAGGAGAATG..............................................................................................................................................................................................................................................................................................................................................................................................CTCGGACTAGCAGAGAAGAACATCTTAAGCTATGACTTCAATTTGGTTGTATCAGAGCCCAGTGATCCTAATACAAATAGCACTACTCTTTTATCGGATGACACCGACGATAAGTCAAGGAAGTGTATTAATCCAGAAATGTGTCCCTCTACTATGCTGCAAGAAGAAGCAAGATATAAGGTGGAGAAGCAAGTTCTTTTAAAGTTACTATTGAAAGCCTTTCTAGCACTTTTATGTAATCACCAAAATTCAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331817" ref_strand="+" ref_description="SGN-E331817 [cTOD-7-K20]">
      <seq>tttgtggatagtactcaaagacttattatcagaaaaaaaaaaacttaagacttctaatacaaattgcagtaacttgcgattctgatatcccaacacatgggtggtaccttttattggtagcagcaccaggctctccttgagttatactagtgagaagttatgttttgtagctacagataataaatgcaccttttgtataaattgctgtaatttgcagttctattgtcccaatacctggatagtacattctattttgagcagcaatctccaagtgctccttagtccaaaatgtattagtgacagatcatgttctgtagctacagatgacaaatgttctttggcaaaagttgcttcttatcaaacattgttgaactaacatgtgtctcttgtgcgtttattatctgtcatttctatgttttcagtctaatgcttcaactgatgctgctcccatagagactgcggttgtagttccatttgaacatccgcctaatgcaccaggaactgatgatcaaagcacaggagaaatttcactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26050" stop="27968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26350" g_stop="26868" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26869" i_stop="27651" i_length="783">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27652" g_stop="27668" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="536" r_length="17" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E331817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26350" e_stop="26868"/>
          <exon e_start="27652" e_stop="27668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGGATAGTACTCAAAGACTTATTATCAGAAAAAAAAAAACTTAAGACTTCTAATACAAATTGCAGTAACTTGCGATTCTGATATCCCAACACATGGGTGGTACCTTTTATTGGTAGCAGCACCAGGCTCTCCTTGAGTTATACTAGTGAGAAGTTATGTTTTGTAGCTACAGATAATAAATGCACCTTTTGTATAAATTGCTGTAATTTGCAGTTCTATTGTCCCAATACCTGGATAGTACATTCTATTTTGAGCAGCAATCTCCAAGTGCTCCTTAGTCCAAAATGTATTAGTGACAGATCATGTTCTGTAGCTACAGATGACAAATGTTCTTTGGCAAAAGTTGCTTCTTATCAAACATTGTTGAACTAACATGTGTCTCTTGTGCGTTTATTATCTGTCATTTCTATGTTTTCAGTCTAATGCTTCAACTGATGCTGCTCCCATAGAGACTGCGGTTGTAGTTCCATTTGAACATCCGCCTAATGCACCAGGAACTGATGATCAAAGCACAGGTCAGTGGTTCACATGATTTTGAAACTCTTAATGGAAGTATTTATCTAAAACTACATGTCGTTAGTTGATGAAGATGAGGACAATCTTCATCCAGAAAACAAATAAGTAAATCATTATCACTGAAAAGGACATTATTGCATTTGGATAATATAATCTTATCTTCCACTTTGTCATGTTTACTCGACCCTATAAGATAGAGAATGCAACAGTATATTTGAAGGAAAAAAAAGTAGTAATAAGTAATGAGTATTCAGCTTGTTGGAAGTGGTGGTGAGTGAGATTTTCTTTTGACTGTTATCTAAGTTTCTAGGAACTTTGAGTATTTTCCCTGTTGCTTCTGCATTTGAACTTTCATTGTTTATACTATTTAGAAGTTACAAGGCATTCCTAAGGAAGCTAAGCATGAATAAGAAAGCAGAAGTAAGCTTTATGTTGCATGTAGATTTGGCATATATACATGCAAAATCAAAAGTACTCGATGTGCTCCATGTGAAGCATATTAGAGCAGTTATGAAGTTCTTGTTTACTGATGTAGAAATGCCTGTACATAGTGAAGTGTTGTAAGCAACTTGATGGTAGTCTCTCTGTTCCGTGTGTTCTTGTTTTATTTGGATTATAATCACGTGAAACTAAATTCTTGTGTCAGTTAATTAACAGGTTCTAAAATTGATTACTAGGTGATATGTCTTGCTTTACATGCTTAAAGATGAATACTTTCTGAGAGATGCAACTTTTCTATATCTTCAAATGAGTTTCAACTGACATATGCATATGTTTAACAGGAGAAATTTCACTATTT</genome_strand>
        <mrna_strand>TTTGTGGATAGTACTCAAAGACTTATTATCAGAAAAAAAAAAACTTAAGACTTCTAATACAAATTGCAGTAACTTGCGATTCTGATATCCCAACACATGGGTGGTACCTTTTATTGGTAGCAGCACCAGGCTCTCCTTGAGTTATACTAGTGAGAAGTTATGTTTTGTAGCTACAGATAATAAATGCACCTTTTGTATAAATTGCTGTAATTTGCAGTTCTATTGTCCCAATACCTGGATAGTACATTCTATTTTGAGCAGCAATCTCCAAGTGCTCCTTAGTCCAAAATGTATTAGTGACAGATCATGTTCTGTAGCTACAGATGACAAATGTTCTTTGGCAAAAGTTGCTTCTTATCAAACATTGTTGAACTAACATGTGTCTCTTGTGCGTTTATTATCTGTCATTTCTATGTTTTCAGTCTAATGCTTCAACTGATGCTGCTCCCATAGAGACTGCGGTTGTAGTTCCATTTGAACATCCGCCTAATGCACCAGGAACTGATGATCAAAGCACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAATTTCACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476628" ref_strand="+" ref_description="SGN-E476628 [cSTB-45-B13]">
      <seq>cacattgatactaacatacaagtcactggagatgtagaaagtcacttgcaaggtgatggctatccaaaaagcaacaatattccaaagtctttatctattgagaggtcatgtactccccctttatcacaggaatttccacatcacaggatctcaaaaatggaggaattctctcaggagtaatgaatcaagtcatgatgccgtcaactcaaatttatcacgagagcctgcaacatctccataatcatgctaattcagctatgttgcctcaatacaactatatgccgcgatatcctcatatgcatggaatatcatcatatcctttctacccgatcggcatgtgctttcaaccaggtcaattgccagaagcacatccgtggcattcatttggcagttcatcttctgctgaaatcaaggtgagcaaagttgatctaagagagacagctttgatgaagtttagacagaagagaaaggaaagatgttttgacaagaagattaggtatattaaccggaagcaactggcagagcagagaccacgtttgaggggacagtttgtaaggaaggccaatggtgtgaatgtagatgtcaatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27528" stop="28791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27828" g_stop="27992" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.836"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27993" i_stop="28074" i_length="82">
            <donor d_prob="0.476" d_score="0.94"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28075" g_stop="28491" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="591" r_length="417" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E476628" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27828" e_stop="27992"/>
          <exon e_start="28075" e_stop="28491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACATTGATTCGAACATACAAGTCACTGGAGATGTAGAAAGTCACTTGCAAGGTGATGGCTAT-------G-A-CAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCAATGGGC</genome_strand>
        <mrna_strand>CACATTGATACTAACATACAAGTCACTGGAGATGTAGAAAGTCACTTGCAAGGTGATGGCTATCCAAAAAGCAACAATATTCCAAAGTCTTTATCTATTGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACATCACAGGATCTCAAAAATGGAGGAATTCTCTCAG..................................................................................GAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATTTATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAACTATATGCCGCGATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTTCAACCAGGTCAATTGCCAGAAGCACATCCGTGGCATTCATTTGGCAGTTCATCTTCTGCTGAAATCAAGGTGAGCAAAGTTGATCTAAGAGAGACAGCTTTGATGAAGTTTAGACAGAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAACTGGCAGAGCAGAGACCACGTTTGAGGGGACAGTTTGTAAGGAAGGCCAATGGTGTGAATGTAGATGTCAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689448" ref_strand="+" ref_description="SGN-E689448 [t3_tus_84_N11]">
      <seq>gtgatggctatgacaatattccaacgtcttttactatcgagaggtcatgtactccccctttatcacaggaatttccacaccactggaactcaaaaatggaggaattctctcaggtgcatatgcatctcaaaaatgaggctcagcatgatgtttccagttttcatgcacaaactccttatccctattatatttcaggagtaatgaatcaagtcatgatgccgtcaactcaaatatatcacgagagcctgcaacatctccataatcatgctaattcagctatgttgcctcaatacaattatatgccgcaatatcctcatatgcatggaatatcatcatatcctttctacccgatcggcatgtgcttacaaccaggtcaattgccagcagcacatccatggcattcgtttggcagttcatcttctgccgaaatcaaggtgagcaaagttgatcttagagagacagctttgatgaagttcagacaaaagagaaaggaaagatgttttgacaagaagattaggtatattaaccggaagcaagtagcagagcagagaccgcgtttgaggggacagtttgtaaggaaggtcaatggtgtgaatgtagatgtcaatgggcagccttcttcagcaggcaatgacgatgttgaagaagaggaagtacaaatagaatatgtggattcttcacacgaggatgatctgtgaacatgtcagttgattgcaactttgtgatagttctcttgtattatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27580" stop="28922"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27880" g_stop="28622" g_length="743"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="743" r_length="743" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E689448" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27880" e_stop="28622"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCAATGGGCAGCCTTCTTCAGCAGGCAATGACGATGTTGAAGAAGAGGAAGTACAAATAGAATATGTGGATTCTTCACACGAGGATGATCTGTGAACATGTCAGTTGATTGCAACTTTGTGATAGTTCTCTTGTATTATC</genome_strand>
        <mrna_strand>GTGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCAATGGGCAGCCTTCTTCAGCAGGCAATGACGATGTTGAAGAAGAGGAAGTACAAATAGAATATGTGGATTCTTCACACGAGGATGATCTGTGAACATGTCAGTTGATTGCAACTTTGTGATAGTTCTCTTGTATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333698" ref_strand="+" ref_description="SGN-E333698 [cTOD-22-G1]">
      <seq>tgatggctatgacaatattccaacgtcttttactatcgagaggtcatgtactccccctttatcacaggaatttccacaccactggaactcaaaaatggaggaattctctcaggtgcatatgcatctcaaaaatgaggctcagcatgatgtttccagttttcatgcacaaactccttatccctattatatttcaggagtaatgaatcaagtcatgatgccgtcaactcaaatatatcacgagagcctgcaacatctccataatcatgctaattcagctatgttgcctcaatacaattatatgccgcaatatcctcatatgcatggaatatcatcatatcctttctacccgatcggcatgtgcttacaaccaggtcaattgccagcagcacatccatggcattcgtttggcagttcatcttctgccgaaatcaaggtgagcaaagttgatcttagagagacagctttgatgaagttcagacaaaagagaaaggaaagatgttttgacaagaagattaggtatattaaccggaagcaagtagcagagcagagaccgcgtttgaggggacagtttgtaaggaaggtcaatggtgtgaatgtagatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="27581" stop="28785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27881" g_stop="28485" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E333698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27881" e_stop="28485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCA</genome_strand>
        <mrna_strand>TGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352064" ref_strand="+" ref_description="SGN-E352064 [cTOS-13-N13]">
      <seq>cagaataacgccttgatctacatgctcacaaatggcacaagcttgctttcagctgccaatcaaaggcacctgcgatctacatgcagcatcggggtgcaatgagattgacctgctccctatcgctttcattcctgtgattttgagctttaagtggatactcttgagagcaccctggacatgagatctcatgtgtggcaggtactatggttttgccatgttatgttatgtccctggaagtaaaagttgttagatccatgttcgaacgagggaagtagagccacaatgcactttgacagtgcaaaaaagtaacgagatcactgtgacattccccctgagggaagtttcatgaagtttaccatatgaaattaaatgtaatagactgatcatatagtaatcttctgacactttgttgtaatgattaagttcataatgcaacatgttattcagcagttggcgttaccaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28367" stop="29434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28667" g_stop="29136" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E352064" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28667" e_stop="29136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAATG</genome_strand>
        <mrna_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354561" ref_strand="+" ref_description="SGN-E354561 [cTOS-17-I22]">
      <seq>cagaataacgccttgatctacatgctcacaaatggcacaagcttgctttcagctgccaatcaaaggcacctgcgatctacatgcagcatcggggtgcaatgagattgacctgctccctatcgctttcattcctgtgattttgagctttaagtggatactcttgagagcaccctggacatgagatctcatgtgtggcaggtactatggttttgccatgttatgttatgtccctggaagtaaaagttgttagatccatgttcgaacgagggaagtagagccacaatgcactttgacagtgcaaaaaagtaacgagatcactgtgacattccccctgagggaagtttcatgaagtttaccatatgaaattaaatgtaatagactgatcatatagtaatcttctgacactttgttgtaatgattaagttcataatgcaacatgttattcagcagttggcgttaccaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28367" stop="29434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28667" g_stop="29136" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E354561" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28667" e_stop="29136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAATG</genome_strand>
        <mrna_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357646" ref_strand="+" ref_description="SGN-E357646 [cTOS-24-O5]">
      <seq>cagaataacgccttgatctacatgctcacaaatggcacaagcttgctttcagctgccaatcaaaggcacctgcgatctacatgcagcatcggggtgcaatgagattgacctgctccctatcgctttcattcctgtgattttgagctttaagtggatactcttgagagcaccctggacatgagatctcatgtgtggcaggtactatggttttgccatgttatgttatgtccctggaagtaaaagttgttagatccatgttcgaacgagggaagtagagccacaatgcactttgacagtgcaaaaaagtaacgagatcactgtgacattccccctgagggaagtttcatgaagtttaccatatgaaattaaatgtaatagactgatcatatagtaatcttctgacactttgttgtaatgattaagttcataatgcaacatgttattcagcagttggcgttaccaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="28367" stop="29434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28667" g_stop="29136" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="470" r_length="470" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E357646" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28667" e_stop="29136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAATG</genome_strand>
        <mrna_strand>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349294" ref_strand="+" ref_description="SGN-E349294 [cTOS-2-N16]">
      <seq>gagagagaactagttagggaagtaatgatattcagggctatgttccacacggcatttattcgctcaaatgttttgatgttaactcgtgatgaagttgatgtcccatgggatgcaaaagaccaattttccagggagttcaaagcagaggtttggtatttattcctctgaacttggccctttttcctttatcctttaacacgaactacaggagttgaataatgctcatttctgtaccaggtactcttttcggacgctgatgctcttccacctattataaccactgaagcaccagacgaggatgataatgcaactgagggagcttcacccgacgagttctttgaggtggaagagatattcagcaatgctgttgatgcacaggatggaagaggggaatctgatgcccattcagttcaagacagtatgcaggatgatgacaacattgaaacatggaaagaagagttggagcatcatgcctttcaagattgttcatttgttgaaggtcatcgcaaactagaagaaaatatggattctactcaacaagcatcaaaaacaaatggtttangggatagggaccacttgattaactccgaggctgttatttctgatgtttctagtcgcaaagattcagtagcacaaacatcgggggcaaatgtcatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="-" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44807" stop="43549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44508" g_stop="43849" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="-" ref_id="SGN-E349294" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349294" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44508" e_stop="43849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATGATCTAGTTAGGGAAGTAATGATATTCAGGGCTATGTTCCACACGGCATTTATTCGCTCAAATGTTTTGATGTTAACTCGTGATGAAGTTGATGTCCCATGGGATGCAAAAGACCAATTTTCCAGGGAGTTCAAAGCAGAGGTTTGGTATTTATTCCTCTGAACTTGGCCCTTTTTCCTTTATCCTTTAACACGAACTACAGGAGTTGAATAATGCTCATTTCTGTACCAGGTACTCTTTTCGGACGCTGATGCTCTTCCACCTATTATAACCACTGAAGCACCAGACGAGGATGATAATGCAACTGAGGGAGCTTCACCCGACGAGTTCTTTGAGGTGGAAGAGATATTCAGCAATGCTGTTGATGCACAGGATGGAAGAGGGGAATCTGATGCCCATTCAGTTCAAGACAGTATGCAGGATGATGACAACATTGAAACATGGAAAGAAGAGTTGGAGCATCATGCCTTTCAAGATTGTTCATTTGTTGAAGGTCATCGCAAACTAGAAGAAAATATGGATTCTACTCAACAAGCATCAAAAACAAATGGTTTAGGGGATAGGGACCACTTGATTAACTCCGAGGCTGTTATTTCTGATGTTTCTAGTCGCAAAGATTCAGTAGCACAAACATCGGGGGCAAATGTCATGTC</genome_strand>
        <mrna_strand>GAGAGA-GAACTAGTTAGGGAAGTAATGATATTCAGGGCTATGTTCCACACGGCATTTATTCGCTCAAATGTTTTGATGTTAACTCGTGATGAAGTTGATGTCCCATGGGATGCAAAAGACCAATTTTCCAGGGAGTTCAAAGCAGAGGTTTGGTATTTATTCCTCTGAACTTGGCCCTTTTTCCTTTATCCTTTAACACGAACTACAGGAGTTGAATAATGCTCATTTCTGTACCAGGTACTCTTTTCGGACGCTGATGCTCTTCCACCTATTATAACCACTGAAGCACCAGACGAGGATGATAATGCAACTGAGGGAGCTTCACCCGACGAGTTCTTTGAGGTGGAAGAGATATTCAGCAATGCTGTTGATGCACAGGATGGAAGAGGGGAATCTGATGCCCATTCAGTTCAAGACAGTATGCAGGATGATGACAACATTGAAACATGGAAAGAAGAGTTGGAGCATCATGCCTTTCAAGATTGTTCATTTGTTGAAGGTCATCGCAAACTAGAAGAAAATATGGATTCTACTCAACAAGCATCAAAAACAAATGGTTTANGGGATAGGGACCACTTGATTAACTCCGAGGCTGTTATTTCTGATGTTTCTAGTCGCAAAGATTCAGTAGCACAAACATCGGGGGCAAATGTCATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288268" ref_strand="+" ref_description="SGN-E288268 [cLES-16-D5]">
      <seq>tagtctacttgcaccatgattgctacccttgcattgtccacagagatgtcaaagctaacaacgtgcttcttgacaaggacggaagagcaaaagtcaccgattttggccttgccagggtcatgatttctgaacatactcatgttagcacaatggtggcagggactattggttatgttgcaccagaatatgggcagataatgcaggccactacaaaaggagatgtctacagctatggggtgctagcaatggagctagcaactgggaggcatgctatagatgggggcgaagaatgtctagttgaatgggcgacaagggtcatgggagacggaaggaaagggttcaccagagccattataccagatgctctattggtacctggcctagtagagggagcagaggaaatgtatgagttgcttangattgggataaggtgcacagctgagacgcctcatgaccggcctaacatgaagcaagtattagatatgttgattagtgttcctagcagccaaaagggatccagccgtagctttggatcaagtcgtagcacttctccattattatgatagactctcttggaatccaagagatcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52462" stop="53654"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52762" g_stop="53354" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E288268" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52762" e_stop="53354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCTACTTGCACCATGATTGCTACCCTTGCATTGTCCACAGAGATGTCAAAGCTAACAACGTGCTTCTTGACAAGGACGGAAGAGCAAAAGTCACCGATTTTGGCCTTGCCAGGGTCATGATTTCTGAACATACTCATGTTAGCACAATGGTGGCAGGGACTATTGGTTATGTTGCACCAGAATATGGGCAGATAATGCAGGCCACTACAAAAGGAGATGTCTACAGCTATGGGGTGCTAGCAATGGAGCTAGCAACTGGGAGGCATGCTATAGATGGGGGCGAAGAATGTCTAGTTGAATGGGCGACAAGGGTCATGGGAGACGGAAGGAAAGGGTTCACCAGAGCCATTATACCAGATGCTCTATTGGTACCTGGCCTAGTAGAGGGAGCAGAGGAAATGTATGAGTTGCTTAGGATTGGGATAAGGTGCACAGCTGAGACGCCTCATGACCGGCCTAACATGAAGCAGGTATTAGATATGTTGATTAGTGTTCCTAGCAGCCAAAAGGGATCCAGCCGTAGCTTTGGATCAAGTCGTAGCACTTCTCCATTATTATGATAGACTCTCTTGGAATCCAAGAGATCAAAA</genome_strand>
        <mrna_strand>TAGTCTACTTGCACCATGATTGCTACCCTTGCATTGTCCACAGAGATGTCAAAGCTAACAACGTGCTTCTTGACAAGGACGGAAGAGCAAAAGTCACCGATTTTGGCCTTGCCAGGGTCATGATTTCTGAACATACTCATGTTAGCACAATGGTGGCAGGGACTATTGGTTATGTTGCACCAGAATATGGGCAGATAATGCAGGCCACTACAAAAGGAGATGTCTACAGCTATGGGGTGCTAGCAATGGAGCTAGCAACTGGGAGGCATGCTATAGATGGGGGCGAAGAATGTCTAGTTGAATGGGCGACAAGGGTCATGGGAGACGGAAGGAAAGGGTTCACCAGAGCCATTATACCAGATGCTCTATTGGTACCTGGCCTAGTAGAGGGAGCAGAGGAAATGTATGAGTTGCTTANGATTGGGATAAGGTGCACAGCTGAGACGCCTCATGACCGGCCTAACATGAAGCAAGTATTAGATATGTTGATTAGTGTTCCTAGCAGCCAAAAGGGATCCAGCCGTAGCTTTGGATCAAGTCGTAGCACTTCTCCATTATTATGATAGACTCTCTTGGAATCCAAGAGATCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545507" ref_strand="+" ref_description="SGN-E545507 [TUS-68-G7]">
      <seq>gagaagaaatggagaataataattctcatgatgatcaatatggtagaaaagtgatgaaggatgtctctcttcatgaacttagagagaaacttgttgaattttctagagttagaggttgggatcagtatcacagtcctagaaaccttctcctagctctggttggagaagtgggagaactatcagagatatttcagtggaaaggtgaagttgcaaggggtttacctaactggacatcagatgataaagaacatttggaggaagaactttctgatgttttactctatttggttcagctagctcatgtttgtggacttgatttaggtcaagcagcacttactaaaattgtcaaaaatgctcaaaaataccctgttactaaacctacttaattaattaattgtcacaaattaagctactgttatcttaaaatatagctatacgtatgtctcatctccaaagtaagacaagttatttattataatgtatcaaaattgatcaatttcaatttgtttgtttttgttttaaaaataatgttttttttanaaaanaaaaaaaaaaaanaaaaaaaaaaaaaaannaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56008" stop="57454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56308" g_stop="56465" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56466" i_stop="56770" i_length="305">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56771" g_stop="57150" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="538" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57151" i_stop="57443" i_length="293">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.173" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57444" g_stop="57454" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="549" r_length="11" r_score="0.636"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="573"/>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E545507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E545507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56308" e_stop="56465"/>
          <exon e_start="56771" e_stop="57150"/>
          <exon e_start="57444" e_stop="57454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGAAATGGAGAATAATAATTCTCATGATGATCAATATGGTAGAAAAGTGATGAAGGATGTCTCTCTTCATGAACTTAGAGAGAAACTTGTTGAATTTTCTAGAGTTAGAGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCTCTGGTAAGCCACCTCACATTTATATAGTTCAGAACGAGCGTGATCATATTATACCAATCAATTTTATCTGTTGTAGGTTTATTTTTAGTCTGTTTCGAAAAAATGTCTTTTTGCAATTTATTAATTTCAAATTTTCACATGACATAAATAAAATCACAAGATTAAAAGTATATACGTGACTTAACAATGTAAGCATATTCTTTCCTAACATATGGTATGATATTATTCGTTTTAGGCCAAACATATAAGATATATATTGTCTGTTTTAGACGTGACTTTATTCGCACACCCAAAATATGTTTGAACAGGTTGGAGAAGTGGGAGAACTATCAGAGATATTTCAGTGGAAAGGTGAAGTTGCAAGGGGTTTACCTAACTGGACATCAGATGATAAAGAACATTTGGAGGAAGAACTTTCTGATGTTTTACTCTATTTGGTTCAGCTAGCTCATGTTTGTGGACTTGATTTAGGTCAAGCAGCACTTACTAAAATTGTCAAAAATGCTCAAAAATACCCTGTTACTAAACCTACTTAATTAATTAATTGTCACAAATTAAGCTACTGTTATCTTAAAATATAGCTATACGTATGTCTCATCTCCAAAGTAAGACAAGTTATTTATTATAATGTATCAAAATTGATCAATTTCAATTTGTTTGTTTTTGTTTTAAAAATAATGTTTTTTTTATAACTTTTAATTTTGTAACAAGTTTAAGACTATAAGATTAAAATATATTTAACATATTTTAATTTAATATCATAATTTTATTTTTAAAAAATCATTATTTTCAAGCTCTATATTTAGTTAAAATAGAACAAATAAATTAAAACGACGAGAATTGTATCTATTCCATATAATTTCTTGGTTACATAAAGAATTTTCACTCATATATTATAAGATTAAAATATATTTGACATATCTTTAATTTAACATTATAATTTTTTTTTTAAAAATTATTATTTTCAAACTCTATATCTAGTTAAAATAGAA</genome_strand>
        <mrna_strand>GAGAAGAAATGGAGAATAATAATTCTCATGATGATCAATATGGTAGAAAAGTGATGAAGGATGTCTCTCTTCATGAACTTAGAGAGAAACTTGTTGAATTTTCTAGAGTTAGAGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCTCTG.................................................................................................................................................................................................................................................................................................................GTTGGAGAAGTGGGAGAACTATCAGAGATATTTCAGTGGAAAGGTGAAGTTGCAAGGGGTTTACCTAACTGGACATCAGATGATAAAGAACATTTGGAGGAAGAACTTTCTGATGTTTTACTCTATTTGGTTCAGCTAGCTCATGTTTGTGGACTTGATTTAGGTCAAGCAGCACTTACTAAAATTGTCAAAAATGCTCAAAAATACCCTGTTACTAAACCTACTTAATTAATTAATTGTCACAAATTAAGCTACTGTTATCTTAAAATATAGCTATACGTATGTCTCATCTCCAAAGTAAGACAAGTTATTTATTATAATGTATCAAAATTGATCAATTTCAATTTGTTTGTTTTTGTTTTAAAAATAATGTTTTTTTT.....................................................................................................................................................................................................................................................................................................ANAAAANAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311134" ref_strand="+" ref_description="SGN-E311134 [cLEZ-16-J13]">
      <seq>agaagaaatggagaataataattctcatgatgatcaatatggtagaaaagtgatgaaggatgtctctcttcatgaacttagagagaaacttgttgaattttctagagttagaggttgggatcactatcacagtcctagaaaccttctcctagctctggttggagaagtgggagaactatcacagatatttcaccggaaaggtgaagttgcaaggggttcacctaactggacatcatatgataaagaacatttggaggaccaacttcctgatgttgaactctatttggatcagctggctcatgtttgtggacttgatttatgtcaagcagcacttactaaaattgtcaaaaatgctcaaaaataccctgttactaaacctacttaattaattaattgtcacaaattaagctactgttatcttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="56009" stop="57338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56309" g_stop="56465" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56466" i_stop="56770" i_length="305">
            <donor d_prob="0.855" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56771" g_stop="57038" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="425" r_length="268" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E311134" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56309" e_stop="56465"/>
          <exon e_start="56771" e_stop="57038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAATGGAGAATAATAATTCTCATGATGATCAATATGGTAGAAAAGTGATGAAGGATGTCTCTCTTCATGAACTTAGAGAGAAACTTGTTGAATTTTCTAGAGTTAGAGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCTCTGGTAAGCCACCTCACATTTATATAGTTCAGAACGAGCGTGATCATATTATACCAATCAATTTTATCTGTTGTAGGTTTATTTTTAGTCTGTTTCGAAAAAATGTCTTTTTGCAATTTATTAATTTCAAATTTTCACATGACATAAATAAAATCACAAGATTAAAAGTATATACGTGACTTAACAATGTAAGCATATTCTTTCCTAACATATGGTATGATATTATTCGTTTTAGGCCAAACATATAAGATATATATTGTCTGTTTTAGACGTGACTTTATTCGCACACCCAAAATATGTTTGAACAGGTTGGAGAAGTGGGAGAACTATCAGAGATATTTCAGTGGAAAGGTGAAGTTGCAAGGGGTTTACCTAACTGGACATCAGATGATAAAGAACATTTGGAGGAAGAACTTTCTGATGTTTTACTCTATTTGGTTCAGCTAGCTCATGTTTGTGGACTTGATTTAGGTCAAGCAGCACTTACTAAAATTGTCAAAAATGCTCAAAAATACCCTGTTACTAAACCTACTTAATTAATTAATTGTCACAAATTAAGCTACTGTTATCTTAAAA</genome_strand>
        <mrna_strand>AGAAGAAATGGAGAATAATAATTCTCATGATGATCAATATGGTAGAAAAGTGATGAAGGATGTCTCTCTTCATGAACTTAGAGAGAAACTTGTTGAATTTTCTAGAGTTAGAGGTTGGGATCACTATCACAGTCCTAGAAACCTTCTCCTAGCTCTG.................................................................................................................................................................................................................................................................................................................GTTGGAGAAGTGGGAGAACTATCACAGATATTTCACCGGAAAGGTGAAGTTGCAAGGGGTTCACCTAACTGGACATCATATGATAAAGAACATTTGGAGGACCAACTTCCTGATGTTGAACTCTATTTGGATCAGCTGGCTCATGTTTGTGGACTTGATTTATGTCAAGCAGCACTTACTAAAATTGTCAAAAATGCTCAAAAATACCCTGTTACTAAACCTACTTAATTAATTAATTGTCACAAATTAAGCTACTGTTATCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364102" ref_strand="+" ref_description="SGN-E364102 [cLPP-16-C23]">
      <seq>tttggggtccctgttccttacatctaagtaaaaggactccaaacgtgtgaagttgacggttcaaaaagcactctggtacttcttgctttcaggtcccggggtgttggtttgctatttcatttccttctcttacaatggctgatggaatacctgaaaacctggagaaaatcgagccttatagtaaatcgtgtgagaaggaattcaaccggaagtgtaggctttgaaatgggaggatacaaggtcttgtcacgttatcttgacgttccaagaagttcatgccatgatatgtgcaaacatggttatgaacatgattctccaacaaaggcgaagattcctcggccctcaagagcaacattagggaaaatcctagaaaggaagaaagtaccaggctcaactaaactaccttctgagatcaagagccagacaacttgccaagtcaatggacaggaaatgcaatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72955" stop="75078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73255" g_stop="73288" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73289" i_stop="74250" i_length="962">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74251" g_stop="74314" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="98" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74315" i_stop="74418" i_length="104">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74419" g_stop="74778" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="459" r_length="361" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E364102" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73255" e_stop="73288"/>
          <exon e_start="74251" e_stop="74314"/>
          <exon e_start="74419" e_stop="74778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGTCCCTCTTCCTTACATCTAAGTAAAAGGTATAATTTTAGCAAAACTTTTTTTTTCTTCTTTCTCTTAACATTTTTTTTCTTTATTTGTTAGTTAAAAGTTTCTTGATTCTTGATTTTAGAATTGAGTTTCTTCTTGATGATCAAAACTTCTTGTTTCTATTCTGAAACCTCAATGGTATGATTTGTTTATAGCCAAATTCATTTTTTCAAATTTTAAAAATTTAAAACTTAATCTGATTTTAAAAGATTGTTGAAGAAGAGTACCTCAATAAGTAGATCTAAATTCTTGGAATATAAGATTGTTCATCTAGCACATTGAAAATGGATATGTTGATTAATTAAGGCTGTTGATAATAGGGAATATCAAATATATGGTGTAATCTTACATGAACAAAACAATGACGATGTCTTTAATGTAATTCTACAAAGTGGGGTATGGAAATCTCACCTGAACAAGCAAGATTATATATTTGATGTCAAGAAATGGAGATGTTGATTAATTTAATGTGACCAAAACATCTGTGCTAGAGTTTATGTTCTCAGCCTCTATGAATGATATAGCCAAATTTGAGCTTTGGGATTTTAAGCTTATTGTTGTTTGAGGGATAAGAATTTGAACTAATCTATTAGGATTAATAAGATGATAAGAGTTCAAGTTCGAGTTCAAGTTGGTGGAATGGACAGATGAAAGCATTAACCGAAAGCTTCTGAAAAGAACATTTTCTTCTTGTTGTTTTATCCTGTTTTTTCCTCGAAAAACTGTTATGAAATAAGTGATAGCATATCCTTTTTCTAGCTTTCCAACTGCTCAATTTCATGTTAGCAACTGTAGGTTATGAATATAGAGGGCACTAAATGTATGTAATTCTCCTTTTGTTGTTATCTGCATTTTATGACAGAATGTTGAGTTAAGTCACACAAGCCATGGATGAAAAAGCATCCCCACCTGATCTTCACCAGTTAACATGTCCTTGTTTCTGTCTATTTAGGACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTTCCGGTGAGTACTCTTGTTTAGCAGTTGGGGAAGTAGCAGAAAATATTCACAGAGATTTTTAGTTGCTTACTCTAAACCCCTCTATATCATGCTGAACATATCTGCAGGGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCC-TATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACGAAGGCTAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAGGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCG</genome_strand>
        <mrna_strand>TTTGGGGTCCCTGTTCCTTACATCTAAGTAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTCCCG........................................................................................................GGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCCTTATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACAAAGGCGAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAAGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334033" ref_strand="+" ref_description="SGN-E334033 [cTOD-24-G18]">
      <seq>ttccttacatctaagtaaaaggactccaaacgtgtgaagttgacggttcaaaaagcactctggtacttcttgctttcaggttccggggtgttggtttgctatttcatttccttctcttacaatggctgatggaatacctgaaaacctggagaaaatcgagcctatagtaaatcgtgtgagaaggaattcaaccggaagtgtaggctttgaaatgggaggatacaaggtcttgtcacgttatcttgacgttccaagaagttcatgccatgatatgtgcaaacatggttatgaacatgattctccaacgaaggctaagattcctcggccctcaagagcaacattagggaaaatcctagaaaggaagaaagtaccaggctcaactaaactaccttctgagatcaggagccagacaacttgccaagtcaatggacaggaaatgcaatcgtccaccaaaagattagcgccttctggaaatcaacaaagtgagtccaagcttaagcctttggaagaaaatgcatcaagaaggcatcaaagaagatacagtgacaactttataccagggaattcttcgaaacttcaagagtctctatcaaatggatcaagcagtagacaaaaccagagctgtaaaatggagaaagacagtggatcctccgagctaagcaagaaaaagaatattgttacctcaactgttgcattgtctccaaaatcttctgtgaaaaaagtatcgagcacaatatccagtaacaactcccccagaaaggcatctcaacttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="72968" stop="75407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73268" g_stop="73288" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73289" i_stop="74250" i_length="962">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74251" g_stop="74314" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="85" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74315" i_stop="74418" i_length="104">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74419" g_stop="75107" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="774" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E334033" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73268" e_stop="73288"/>
          <exon e_start="74251" e_stop="74314"/>
          <exon e_start="74419" e_stop="75107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTACATCTAAGTAAAAGGTATAATTTTAGCAAAACTTTTTTTTTCTTCTTTCTCTTAACATTTTTTTTCTTTATTTGTTAGTTAAAAGTTTCTTGATTCTTGATTTTAGAATTGAGTTTCTTCTTGATGATCAAAACTTCTTGTTTCTATTCTGAAACCTCAATGGTATGATTTGTTTATAGCCAAATTCATTTTTTCAAATTTTAAAAATTTAAAACTTAATCTGATTTTAAAAGATTGTTGAAGAAGAGTACCTCAATAAGTAGATCTAAATTCTTGGAATATAAGATTGTTCATCTAGCACATTGAAAATGGATATGTTGATTAATTAAGGCTGTTGATAATAGGGAATATCAAATATATGGTGTAATCTTACATGAACAAAACAATGACGATGTCTTTAATGTAATTCTACAAAGTGGGGTATGGAAATCTCACCTGAACAAGCAAGATTATATATTTGATGTCAAGAAATGGAGATGTTGATTAATTTAATGTGACCAAAACATCTGTGCTAGAGTTTATGTTCTCAGCCTCTATGAATGATATAGCCAAATTTGAGCTTTGGGATTTTAAGCTTATTGTTGTTTGAGGGATAAGAATTTGAACTAATCTATTAGGATTAATAAGATGATAAGAGTTCAAGTTCGAGTTCAAGTTGGTGGAATGGACAGATGAAAGCATTAACCGAAAGCTTCTGAAAAGAACATTTTCTTCTTGTTGTTTTATCCTGTTTTTTCCTCGAAAAACTGTTATGAAATAAGTGATAGCATATCCTTTTTCTAGCTTTCCAACTGCTCAATTTCATGTTAGCAACTGTAGGTTATGAATATAGAGGGCACTAAATGTATGTAATTCTCCTTTTGTTGTTATCTGCATTTTATGACAGAATGTTGAGTTAAGTCACACAAGCCATGGATGAAAAAGCATCCCCACCTGATCTTCACCAGTTAACATGTCCTTGTTTCTGTCTATTTAGGACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTTCCGGTGAGTACTCTTGTTTAGCAGTTGGGGAAGTAGCAGAAAATATTCACAGAGATTTTTAGTTGCTTACTCTAAACCCCTCTATATCATGCTGAACATATCTGCAGGGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCCTATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACGAAGGCTAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAGGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCGTCCACCAAAAGATTAGCGCCTTCTGGAAATCAACAAAGTGAGTCCAAGCTTAAGCCTTTGGAAGAAAATGCATCAAGAAGGCATCAAAGAAGATACAGTGACAACTTTATACCAGGGAATTCTTCGAAACTTCAAGAGTCTCTATCAAATGGATCAAGCAGTAGACAAAACCAGAGCTGTAAAATGGAGAAAGACAGTGGATCCTCCGAGCTAAGCAAGAAAAAGAATATTGTTACCTCAACTGTTGCATTGTCTCCAAAATCTTCTGTGAAAAAAGTATCGAGCACAATATCCAGTAACAACTCCCCCAGAAAGGCATCTCAACTTAA</genome_strand>
        <mrna_strand>TTCCTTACATCTAAGTAAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTTCCG........................................................................................................GGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCCTATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACGAAGGCTAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAGGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCGTCCACCAAAAGATTAGCGCCTTCTGGAAATCAACAAAGTGAGTCCAAGCTTAAGCCTTTGGAAGAAAATGCATCAAGAAGGCATCAAAGAAGATACAGTGACAACTTTATACCAGGGAATTCTTCGAAACTTCAAGAGTCTCTATCAAATGGATCAAGCAGTAGACAAAACCAGAGCTGTAAAATGGAGAAAGACAGTGGATCCTCCGAGCTAAGCAAGAAAAAGAATATTGTTACCTCAACTGTTGCATTGTCTCCAAAATCTTCTGTGAAAAAAGTATCGAGCACAATATCCAGTAACAACTCCCCCAGAAAGGCATCTCAACTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361966" ref_strand="+" ref_description="SGN-E361966 [cLPP-11-G18]">
      <seq>ttacatctaagtaaaaggactccaaacgtgtgaagttgacggttcaaaaagcactctggtacttcttgctttcaggtcccggggtgttggtttgctatttcatttccttctcttacaatggctgatggaatacctgaaaacctggagaaaatcgagccttatagtaaatcgtgtgagaaggaattcaaccggaagtgtaggctttgaaatgggaggatacaaggtcttgtcacgttatcttgacgttccaagaagttcatgccatgatatgtgcaaacatggttatgaacatgattctccaacaaaggcgaagattcctcggccctcaagagcaacattaaggaaaatcctagaaaggaagaaagtaccaggctcaactaaactaccttctgagatcaagagccagacaacttgccaagtcaatggacaggaaatgcaatcgtccaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="73949" stop="75087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74251" g_stop="74314" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="81" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="74315" i_stop="74418" i_length="104">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74419" g_stop="74787" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="451" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E361966" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74251" e_stop="74314"/>
          <exon e_start="74419" e_stop="74787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTTCCGGTGAGTACTCTTGTTTAGCAGTTGGGGAAGTAGCAGAAAATATTCACAGAGATTTTTAGTTGCTTACTCTAAACCCCTCTATATCATGCTGAACATATCTGCAGGGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCC-TATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACGAAGGCTAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAGGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCGTCCACCAAA</genome_strand>
        <mrna_strand>GACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTCCCG........................................................................................................GGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCCTTATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACAAAGGCGAAGATTCCTCGGCCCTCAAGAGCAACATTAAGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAAGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCGTCCACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547653" ref_strand="+" ref_description="SGN-E547653 [TUS-71-K8]">
      <seq>aagacagcgtcttcatccctttgttccccatcatttccaccatcttcaggtggtagtaactcgagaactattgacaccactacccagtcatccgtttcctcatcttcattgatgtcaccgtcatcaaactcagcaaatgagtctgctcactgtgatggaacaagctctagcaccagtcaaaatggaactacaactcagaagcaaagcacaaaacctcggaaagctggacaacttggcttagaaaaggaagattacagtcctaaactgctaaagttcaaaaaagggaagacaattgatacccaatctgagaaagacagtccgcggaaacaaaagttgaggcaagtcaccataaaagataagggcgaaaatgaaaatggtaatccaataggaaaaggtttgagaaaatccaatgctgatggccattcatatgctgcgaaaggcgaagttgtgacagtaaatcttcgatccaatggtatagaggattcaaaagaaactccaagtttgttcaacaacgtgattgaagttactgcaagcaagcttgccaagactaggagaagcaaggtcaaggctctggtgggtgcttttgaaactgtaatctcccttcaggataaaaaatcctctccagtaattggaagatcttaacttacatttctctttacagaaggaatctgtctgccaggtgcaggattccaagcagtaatctgtatgataatactttgttactgtccttgtgactattactttaggtaggttgtagggattgatcactcaaatttgatttttaatcgagttaatgagtgcttagaacagtctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74980" stop="76394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75280" g_stop="76095" g_length="816"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E547653" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>816</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75280" e_stop="76095"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACAGTGTCTTCATCCCTTTGTTCCCCATCATTTCCACCATCTTCAGGTGGTAGTAACTCGAGAACTATTGACACCACTACCCAGTCATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGGAACAAGCTCTAGCACCAGTCAAAATGGAACTACAACTCAGAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTGCAGTCCTAAACAGCTCAAGTTCAAAAAAGGGAAGACAATTGATATCCAATCTGAGAAATACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAAGATAAGGGCGAAAATGAAAATGGTAATCCAATAGGAAAAGGTTTGAGAAAATCCAATGCTGATGGCCATTCATATGCTGCGAAAGGCGAAGTTGTGACAGTAAATCTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAATTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATTTGTCTGCCAGATGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTAGTGACTATTACTTTAGGTA-GTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTC</genome_strand>
        <mrna_strand>AAGACAGCGTCTTCATCCCTTTGTTCCCCATCATTTCCACCATCTTCAGGTGGTAGTAACTCGAGAACTATTGACACCACTACCCAGTCATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGGAACAAGCTCTAGCACCAGTCAAAATGGAACTACAACTCAGAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTACAGTCCTAAACTGCTAAAGTTCAAAAAAGGGAAGACAATTGATACCCAATCTGAGAAAGACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAAGATAAGGGCGAAAATGAAAATGGTAATCCAATAGGAAAAGGTTTGAGAAAATCCAATGCTGATGGCCATTCATATGCTGCGAAAGGCGAAGTTGTGACAGTAAATCTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAGTTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATCTGTCTGCCAGGTGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTTGTGACTATTACTTTAGGTAGGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364187" ref_strand="+" ref_description="SGN-E364187 [cLPP-16-P17]">
      <seq>agacagcgtcttcatccctgtgttccccatcatttccaccatcttcaggtggtagtaactcgagaactattgacaccactacccagtcatccgtttcctcatcttcattgatgtcaccgtcatcaaactcagcaaatgagtctgctcactgtgatggaacaagctctagcaccagtcaaaatggaactacaactcagaagcaaagcacaaaacctcggaaagctggacaacttggcttagaaaaggaagattacagtcctaaactgctaaagttcaaaaaagggaagacaattgatacccaatctgagaaagacagtccgcggaaacaaaagttgaggcaagtcaccataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="74981" stop="75933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75281" g_stop="75633" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E364187" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75281" e_stop="75633"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACAGTGTCTTCATCCCTTTGTTCCCCATCATTTCCACCATCTTCAGGTGGTAGTAACTCGAGAACTATTGACACCACTACCCAGTCATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGGAACAAGCTCTAGCACCAGTCAAAATGGAACTACAACTCAGAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTGCAGTCCTAAACAGCTCAAGTTCAAAAAAGGGAAGACAATTGATATCCAATCTGAGAAATACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAA</genome_strand>
        <mrna_strand>AGACAGCGTCTTCATCCCTGTGTTCCCCATCATTTCCACCATCTTCAGGTGGTAGTAACTCGAGAACTATTGACACCACTACCCAGTCATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGGAACAAGCTCTAGCACCAGTCAAAATGGAACTACAACTCAGAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTACAGTCCTAAACTGCTAAAGTTCAAAAAAGGGAAGACAATTGATACCCAATCTGAGAAAGACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547652" ref_strand="+" ref_description="SGN-E547652 [TUS-71-K8](-)">
      <seq>gaagcaaagcacaaaacctcggaaagctggacaacttggctagaaaaaggaagattacagtcctaaactgctaaagttcaaaaaagggaagacaattgatacccaatctgagaaagacagtccgcggaaacaaaagttgaggcaagtcaccataaaagataagggcgaaaatgaaaatggtaatccaataggaaaaggtttgagaaaatccaatgctgatggccattcatatgctgcgaaaggcgaagttgtgacagtaaatcttcgatccaatggtatagaggattcaaaagaaactccaagtttgttcaacaacgtgattgaagttactgcaagcaagcttgccaagactaggagaagcaaggtcaaggctctggtgggtgcttttgaaactgtaatctcccttcaggataaaaaatcctctccagtaattggaagatcttaacttacatttctctttacagaaggaatctgtctgccaggtgcaggattccaagcagtaatctgtatgataatactttgttactgtccttgtgactattactttaggtagttgtagggattgatcactcaaatttgatttttaatcgagttaatgagtgcttagaacagtctattcagagaaatttggttgagcttaagacattcttcgatgagtaactcacccatgtaaaatttcagtagctgaggcacttgttagcgtattaagtcttaccattaagtattggttttattctgcataacagaatagtccagactttaaattctctgttgaggatgacacacagtcatcctaattcttttatgcctgtacatatttgctcaataaacaacagaaatttcggaggaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75177" stop="76626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75477" g_stop="76325" g_length="849"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="848" r_length="848" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="849" polyA_stop="858"/>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E547652" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75477" e_stop="76325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTGCAGTCCTAAACAGCTCAAGTTCAAAAAAGGGAAGACAATTGATATCCAATCTGAGAAATACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAAGATAAGGGCGAAAATGAAAATGGTAATCCAATAGGAAAAGGTTTGAGAAAATCCAATGCTGATGGCCATTCATATGCTGCGAAAGGCGAAGTTGTGACAGTAAATCTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAATTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATTTGTCTGCCAGATGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTAGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGTACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAATAGAATAGTCCAGACTTTAAAATTCTTTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGG</genome_strand>
        <mrna_strand>GAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTAGAAAAAGGAAGATTACAGTCCTAAACTGCTAAAGTTCAAAAAAGGGAAGACAATTGATACCCAATCTGAGAAAGACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAAGATAAGGGCGAAAATGAAAATGGTAATCCAATAGGAAAAGGTTTGAGAAAATCCAATGCTGATGGCCATTCATATGCTGCGAAAGGCGAAGTTGTGACAGTAAATCTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAGTTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATCTGTCTGCCAGGTGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTTGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGCACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAACAGAATAGTCCAGACTTT-AAATTCTCTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546816" ref_strand="+" ref_description="SGN-E546816 [TUS-70-G1]">
      <seq>cttcgatccaatggtatagaggattcaaaagaaactccaagtttgttcaacaacgtgattgaagttactgcaagcaagcttgccaagactaggagaagcaaggtcaaggctctggtgggtgcttttgaaactgtaatctcccttcaggataaaaaatcctctccagtaattggaagatcttaacttacatttctctttacagaaggaatctgtctgccaggtgcaggattccaagcagtaatctgtatgataatactttgttactgtccttgtgactattactttaggtagttgtagggattgatcactcaaatttgatttttaatcgagttaatgagtgcttagaacagtctattcagagaaatttggttgagcttaagacattcttcgatgagtaactcacccatgtaaaatttcagtagctgaggcacttgttagcgtattaagtcttaccattaagtattggttttattctgcataacagaatagtccagactttaaattctctgttgaggatgacacacagtcatcctaattcttttatgcctgtacatatttgctcaataaacaacagaaatttcggaggattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75439" stop="76629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75739" g_stop="76341" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E546816" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75739" e_stop="76341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAATTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATTTGTCTGCCAGATGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTAGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGTACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAATAGAATAGTCCAGACTTTAAAATTCTTTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGGATTACTCTGAAGCCAA</genome_strand>
        <mrna_strand>CTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAGTTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATCTGTCTGCCAGGTGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTTGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGCACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAACAGAATAGTCCAGACTTT-AAATTCTCTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362827" ref_strand="+" ref_description="SGN-E362827 [cLPP-2-B11]">
      <seq>ttcgatccaatggtatagaggattcaaaagaaactccaagtttgttcaacaacgtgattgaagttactgcaagcaagcttgccaagactaggagaagcaaggtcaaggctctggtgggtgcttttgaaactgtaatctcccttcaggataaaaaatcctctccagtaattggaagatcttaacttacatttctctttacagaaggaatctgtctgccaggtgcaggattccaagcagtaatctgtatgataatactttgttactgtccttgtgactattactttaggtagttgtagggattgatcactcaaatttgatttttaatcgagttaatgagtgcttagaacagtctattcagagaaatttggttgagcttaagacattcttcgatgagtaactcacccatgtaaaatttcagtagctgaggcacttgttagcgtattaagtcttaccattaagtattggttttattctgcataacagaatagtccagactttaaattctctgttgaggatgacacacagtcatcctaattcttttatgcctgtacatatttgctcaataaacaacagaaatttcggaggattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0060G16-iYizU/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0060G16.1" temp_strand="+" temp_description="C06SLm0060G16.1  AC219222.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0060G16 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="75440" stop="76629"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75740" g_stop="76341" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0060G16.1" gen_strand="+" ref_id="SGN-E362827" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0060G16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75740" e_stop="76341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAATTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATTTGTCTGCCAGATGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTAGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGTACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAATAGAATAGTCCAGACTTTAAAATTCTTTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGGATTACTCTGAAGCCAA</genome_strand>
        <mrna_strand>TTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAGTTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATCTGTCTGCCAGGTGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTTGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGCACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAACAGAATAGTCCAGACTTT-AAATTCTCTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGGATTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>24</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="313" PGL_stop="1014"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="313" e_stop="1014"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="313" e_stop="1014" e_length="702"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="313" stop="1014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347640" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCACCACCATTCCAAATCTTTTCCAGTATCGACTTCTCATTTGCTTCTTTTTCATCAGTTTAGATACAGTTATTGTCTTTATATAGTCTTTGTGTTTTTGTTGTTGTGATTCTTAGTTGTTTTTTTTTTTGTAGAAATTCACTTGTGTCCCTCAGTTTGTGGTAAATTTTGTTTCTTTGCTTCATTTATCAGCTCAAATCTATGCGCCTCTGCCTATGATGGCATTAAATATACTTTGAGTATTTCACTATGAAACAACTTGTAATCTGAGGCTTGAGGCTTTATCAATTCCTTGTGTATTCGTGAACTTTTGCGATCCATCTTTGCTTGTTTAATTAATGGGTCTGATATCCTTTTGCTAAAGGAAGAAGCTTTATATAATACATAAGAATTTCAAAATGTTACTACTTTCGCTGACTTTCTTTTTGAAATTCATTATGCCTCTGCTTTTCCAGTAGTGAGAGTCTTGGTTATTATTATATATGTATTCCGCAGGGCAGTTGTCAAGATTATGATTTTGAAATAGCTTGCTTTGGATCCTATTTAATTTGCTAATTCAATGCTTATAGTCATGTTGCATTTTTGGCGGATGGTTTATAAAGAATTTGATATGAGGGATACACTTGTTTATCTTAACTATGAACTCGTCATAATCTTTAACCATTTTCAGTTTTTCCCTCATTTGGTCATTGCAATGATGAT</gDNA_template>
            <first_frame> P  P  P  F  Q  I  F  S  S  I  D  F  S  F  A  S  F  S  S  V  *  I  Q  L  L  S  L  Y  S  L  C  V  F  V  V  V  I  L  S  C  F  F  F  C  R  N  S  L  V  S  L  S  L  W  *  I  L  F  L  C  F  I  Y  Q  L  K  S  M  R  L  C  L  *  W  H  *  I  Y  F  E  Y  F  T  M  K  Q  L  V  I  *  G  L  R  L  Y  Q  F  L  V  Y  S  *  T  F  A  I  H  L  C  L  F  N  *  W  V  *  Y  P  F  A  K  G  R  S  F  I  *  Y  I  R  I  S  K  C  Y  Y  F  R  *  L  S  F  *  N  S  L  C  L  C  F  S  S  S  E  S  L  G  Y  Y  Y  I  C  I  P  Q  G  S  C  Q  D  Y  D  F  E  I  A  C  F  G  S  Y  L  I  C  *  F  N  A  Y  S  H  V  A  F  L  A  D  G  L  *  R  I  *  Y  E  G  Y  T  C  L  S  *  L  *  T  R  H  N  L  *  P  F  S  V  F  P  S  F  G  H  C  N  D  D </first_frame>
            <second_frame>  H  H  H  S  K  S  F  P  V  S  T  S  H  L  L  L  F  H  Q  F  R  Y  S  Y  C  L  Y  I  V  F  V  F  L  L  L  *  F  L  V  V  F  F  F  V  E  I  H  L  C  P  S  V  C  G  K  F  C  F  F  A  S  F  I  S  S  N  L  C  A  S  A  Y  D  G  I  K  Y  T  L  S  I  S  L  *  N  N  L  *  S  E  A  *  G  F  I  N  S  L  C  I  R  E  L  L  R  S  I  F  A  C  L  I  N  G  S  D  I  L  L  L  K  E  E  A  L  Y  N  T  *  E  F  Q  N  V  T  T  F  A  D  F  L  F  E  I  H  Y  A  S  A  F  P  V  V  R  V  L  V  I  I  I  Y  V  F  R  R  A  V  V  K  I  M  I  L  K  *  L  A  L  D  P  I  *  F  A  N  S  M  L  I  V  M  L  H  F  W  R  M  V  Y  K  E  F  D  M  R  D  T  L  V  Y  L  N  Y  E  L  V  I  I  F  N  H  F  Q  F  F  P  H  L  V  I  A  M  M   </second_frame>
            <third_frame>   T  T  I  P  N  L  F  Q  Y  R  L  L  I  C  F  F  F  I  S  L  D  T  V  I  V  F  I  *  S  L  C  F  C  C  C  D  S  *  L  F  F  F  L  *  K  F  T  C  V  P  Q  F  V  V  N  F  V  S  L  L  H  L  S  A  Q  I  Y  A  P  L  P  M  M  A  L  N  I  L  *  V  F  H  Y  E  T  T  C  N  L  R  L  E  A  L  S  I  P  C  V  F  V  N  F  C  D  P  S  L  L  V  *  L  M  G  L  I  S  F  C  *  R  K  K  L  Y  I  I  H  K  N  F  K  M  L  L  L  S  L  T  F  F  L  K  F  I  M  P  L  L  F  Q  *  *  E  S  W  L  L  L  Y  M  Y  S  A  G  Q  L  S  R  L  *  F  *  N  S  L  L  W  I  L  F  N  L  L  I  Q  C  L  *  S  C  C  I  F  G  G  W  F  I  K  N  L  I  *  G  I  H  L  F  I  L  T  M  N  S  S  *  S  L  T  I  F  S  F  S  L  I  W  S  L  Q  *  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0060G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="4135" PGL_stop="3322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4135" e_stop="3853"/>
            <exon e_start="3763" e_stop="3581"/>
            <exon e_start="3410" e_stop="3322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.988" e_score="0.975"/>
          <exon-intron don_prob="0.992" acc_prob="0.000" e_score="0.951"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="4135" e_stop="3853" e_length="283"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.988">
            <gDNA_intron_boundary i_start="3852" i_stop="3764" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="0.951">
            <gDNA_exon_boundary e_start="3763" e_stop="3581" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.000">
            <gDNA_intron_boundary i_start="3580" i_stop="3411" i_length="170"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="3410" e_stop="3322" e_length="89"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4135" stop="3853"/>
              <exon start="3763" stop="3581"/>
              <exon start="3410" stop="3322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCTCTCTCTATCTATTGGAAAAAAAAGTTGATTCTTTATCCCAAAGTTAAGGTAATTAACTGTTAGATAGTACTATAAGTCTAACAACTCCTAGAACTAATTTCTTTTAGTGTCAATGGCAAGTTCATTGAGCAGTGGTTTCTCTGTTTCTGGCCCCTGTTTCAATTCCAGAGCCAAAGGGTCTGCTCATCATTGCTATTCAAATGGAAATTTGCAACTTAAAGATTTAACATCTAGAGAATTTCTAGGCAAATCCTTGAATGTATCAGACCATATACAG : GCACTAGAAGAAATTTGTGTTGAAAGTGGTCAGGGATGGTGGGAGAAGACACTTAAACCCAACATGGTAGAGATCAATTCAGCACAACAACATGTTGATTCATTGTTAAAGGCTGGTGATAGATTAGTCGTAATTGACTTCTACTCTCCTGATTGTGGAGGTTGCAAGACTTCACATCCAAAG : ATGTGTGAGTCAGCTGAATCAAATCCCAATGCCATATTCCTAAAAGTAAACTATGAAGAACTGAAAAGCATGTGCAATGTTCTGCATAT</gDNA_template>
            <first_frame> K  S  L  S  I  Y  W  K  K  K  L  I  L  Y  P  K  V  K  V  I  N  C  *  I  V  L  *  V  *  Q  L  L  E  L  I  S  F  S  V  N  G  K  F  I  E  Q  W  F  L  C  F  W  P  L  F  Q  F  Q  S  Q  R  V  C  S  S  L  L  F  K  W  K  F  A  T  *  R  F  N  I  *  R  I  S  R  Q  I  L  E  C  I  R  P  Y  T   : G  T  R  R  N  L  C  *  K  W  S  G  M  V  G  E  D  T  *  T  Q  H  G  R  D  Q  F  S  T  T  T  C  *  F  I  V  K  G  W  *  *  I  S  R  N  *  L  L  L  S  *  L  W  R  L  Q  D  F  T  S  K   : D  V  *  V  S  *  I  K  S  Q  C  H  I  P  K  S  K  L  *  R  T  E  K  H  V  Q  C  S  A  Y </first_frame>
            <second_frame>  N  L  S  L  S  I  G  K  K  S  *  F  F  I  P  K  L  R  *  L  T  V  R  *  Y  Y  K  S  N  N  S  *  N  *  F  L  L  V  S  M  A  S  S  L  S  S  G  F  S  V  S  G  P  C  F  N  S  R  A  K  G  S  A  H  H  C  Y  S  N  G  N  L  Q  L  K  D  L  T  S  R  E  F  L  G  K  S  L  N  V  S  D  H  I  Q  :  A  L  E  E  I  C  V  E  S  G  Q  G  W  W  E  K  T  L  K  P  N  M  V  E  I  N  S  A  Q  Q  H  V  D  S  L  L  K  A  G  D  R  L  V  V  I  D  F  Y  S  P  D  C  G  G  C  K  T  S  H  P  K  :  M  C  E  S  A  E  S  N  P  N  A  I  F  L  K  V  N  Y  E  E  L  K  S  M  C  N  V  L  H   </second_frame>
            <third_frame>   I  S  L  Y  L  L  E  K  K  V  D  S  L  S  Q  S  *  G  N  *  L  L  D  S  T  I  S  L  T  T  P  R  T  N  F  F  *  C  Q  W  Q  V  H  *  A  V  V  S  L  F  L  A  P  V  S  I  P  E  P  K  G  L  L  I  I  A  I  Q  M  E  I  C  N  L  K  I  *  H  L  E  N  F  *  A  N  P  *  M  Y  Q  T  I  Y  R :   H  *  K  K  F  V  L  K  V  V  R  D  G  G  R  R  H  L  N  P  T  W  *  R  S  I  Q  H  N  N  M  L  I  H  C  *  R  L  V  I  D  *  S  *  L  T  S  T  L  L  I  V  E  V  A  R  L  H  I  Q  R :   C  V  S  Q  L  N  Q  I  P  M  P  Y  S  *  K  *  T  M  K  N  *  K  A  C  A  M  F  C  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4032" stop="3853"/>
                    <exon start="3763" stop="3581"/>
                    <exon start="3410" stop="3324"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLLVSMASSLSSGFSVSGPCFNSRAKGSAHHCYSNGNLQLKDLTSREFLGKSLNVSDHIQALEEICVESGQGWWEKTLKPNMVEINSAQQHVDSLLKAGDRLVVIDFYSPDCGGCKTSHPKMCESAESNPNAIFLKVNYEELKSMCNVLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12486" PGL_stop="12881"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12486" e_stop="12881"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="12486" e_stop="12881" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12486" stop="12881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAGTTGCTGAATTATCTTGAAACAAGAATGCCAAATAAGTCAAAAAACCCAAAAAACAGAAAAAAAAAAAAAAACAGAAAAAAGAGCAGGAAAGAGGTACAACTTTAGTTATTGCAGACAGTATTATATAGCTTATGGCACCAGGGTTGTTGCACTGATGGTGTAAAGATTCGTTTATACTGTCAGTGAATATAAGTTAAATCTATCGCATAAAATACTATTAGTATGTTAATGTTTTGTTGCTTTTTGTTTCTGGGCAACTTATTAGATGGTGATGTTGAAGTTATATAAATAGTACTGAATGGTGTAAGCATGAAACTGTGGGAGATCAAAAGTTGGTGACTGTGATCTTTTCACTGTTGTTTTTTTCTATGGAAAAACTAAACTCTATTCC</gDNA_template>
            <first_frame> W  S  C  *  I  I  L  K  Q  E  C  Q  I  S  Q  K  T  Q  K  T  E  K  K  K  K  T  E  K  R  A  G  K  R  Y  N  F  S  Y  C  R  Q  Y  Y  I  A  Y  G  T  R  V  V  A  L  M  V  *  R  F  V  Y  T  V  S  E  Y  K  L  N  L  S  H  K  I  L  L  V  C  *  C  F  V  A  F  C  F  W  A  T  Y  *  M  V  M  L  K  L  Y  K  *  Y  *  M  V  *  A  *  N  C  G  R  S  K  V  G  D  C  D  L  F  T  V  V  F  F  Y  G  K  T  K  L  Y  S </first_frame>
            <second_frame>  G  V  A  E  L  S  *  N  K  N  A  K  *  V  K  K  P  K  K  Q  K  K  K  K  K  Q  K  K  E  Q  E  R  G  T  T  L  V  I  A  D  S  I  I  *  L  M  A  P  G  L  L  H  *  W  C  K  D  S  F  I  L  S  V  N  I  S  *  I  Y  R  I  K  Y  Y  *  Y  V  N  V  L  L  L  F  V  S  G  Q  L  I  R  W  *  C  *  S  Y  I  N  S  T  E  W  C  K  H  E  T  V  G  D  Q  K  L  V  T  V  I  F  S  L  L  F  F  S  M  E  K  L  N  S  I   </second_frame>
            <third_frame>   E  L  L  N  Y  L  E  T  R  M  P  N  K  S  K  N  P  K  N  R  K  K  K  K  N  R  K  K  S  R  K  E  V  Q  L  *  L  L  Q  T  V  L  Y  S  L  W  H  Q  G  C  C  T  D  G  V  K  I  R  L  Y  C  Q  *  I  *  V  K  S  I  A  *  N  T  I  S  M  L  M  F  C  C  F  L  F  L  G  N  L  L  D  G  D  V  E  V  I  *  I  V  L  N  G  V  S  M  K  L  W  E  I  K  S  W  *  L  *  S  F  H  C  C  F  F  L  W  K  N  *  T  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0060G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="23178" PGL_stop="25833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23178" e_stop="23697"/>
            <exon e_start="24812" e_stop="24973"/>
            <exon e_start="25061" e_stop="25194"/>
            <exon e_start="25577" e_stop="25833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.874" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23178" e_stop="23697" e_length="520"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="23698" i_stop="24811" i_length="1114"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="24812" e_stop="24973" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.981" acc_prob="0.846">
            <gDNA_intron_boundary i_start="24974" i_stop="25060" i_length="87"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25061" e_stop="25194" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.874" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25195" i_stop="25576" i_length="382"/>
          </intron>
          <exon e_serial="4" e_score="0.903">
            <gDNA_exon_boundary e_start="25577" e_stop="25833" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23178" stop="23697"/>
              <exon start="24812" stop="24973"/>
              <exon start="25061" stop="25168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24830" stop="24973"/>
              <exon start="25061" stop="25194"/>
              <exon start="25577" stop="25833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424605" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTGCTAACGTGCGCCGACCAGTCCGTCAACGGGGATATATTACGTTTATATTTTGATTGGTGATTCCGAGTTCCGACCGGTATATATCGGTCGGCGGCTGACTTGGTGAAACAGAAATGGCCGAAGTTTCTAGATTGATTGCTCTGCTTTCTTGTTGTACCGTGCTCAGTGTAACCGTCTGTTGCTAAATGAATTGGATTGGATGACTACGTGATCAGCAAGATGATGCTGTGCTGAACTGACAGCCATAACTTTAATTATTGTAGTTTTTTGATCCCTGTAGTGGAGCGGGAAGTAATAGTAATGGAAGTTCTTCAATAACAGTTTTGGGAGAGCTAGGGTTGTATTAGAACCCTAATTTTTATTTTTTTTTGTGTAATGGTTATGGAGAAGAATGAGACTGTGAGGACAGGGGATGGGTTTATTGACAGGAGTAAAGTTAGGATTTTGCTGTGTGATAGCGATGCCAAAAGCTCGGAGGAAGTTTTTACTCTCTTGTGCAAATGTTCTTATCAAG : TGATATCAGTGAGGTCACCCAGACAGGTGATTGATGCATTGAATGCAGAAGGACCTCATATCGATCTCATCCTTTCAGAAGTTGACCTTCCTATGTCTAAAGGATTTAAGATGTTGAAGCACATTATGAGGGATAAGCAGTTGCGACACATTCCAGTGATCA : TGATGTCATCGCAAGATGAAGTCTCTATTGTTATTAAGTGCCTGAAATTTGGAGCCGCTGACTACCTGGTAAAGCCTCTCAGAACTAATGAGCTATTGAACTTGTGGACACACATGTGGAGAAGAAGGAGAATG : CTCGGACTAGTAGAGAAGAACATCATAAATTATGACTTTAATCTGGTCGTATCAGAGCCCAGTGATCCCAACACAAATAGCACTACTCTTTTCTCGGATGATACCGATGATAAGTCATGGAAGTGTGTTAATCCAGAAATATGTCCCTCTACTATGCTGCAAGAAGAAGCAAGATGCAAGGTGGAAAAGCAAGTTCTTTTGAAGTTACTTTTGAAAGCGTTTCTAGCACATTCATGTAATCACCAAAATTTAAGTTG</gDNA_template>
            <first_frame> I  L  L  T  C  A  D  Q  S  V  N  G  D  I  L  R  L  Y  F  D  W  *  F  R  V  P  T  G  I  Y  R  S  A  A  D  L  V  K  Q  K  W  P  K  F  L  D  *  L  L  C  F  L  V  V  P  C  S  V  *  P  S  V  A  K  *  I  G  L  D  D  Y  V  I  S  K  M  M  L  C  *  T  D  S  H  N  F  N  Y  C  S  F  L  I  P  V  V  E  R  E  V  I  V  M  E  V  L  Q  *  Q  F  W  E  S  *  G  C  I  R  T  L  I  F  I  F  F  C  V  M  V  M  E  K  N  E  T  V  R  T  G  D  G  F  I  D  R  S  K  V  R  I  L  L  C  D  S  D  A  K  S  S  E  E  V  F  T  L  L  C  K  C  S  Y  Q   : V  I  S  V  R  S  P  R  Q  V  I  D  A  L  N  A  E  G  P  H  I  D  L  I  L  S  E  V  D  L  P  M  S  K  G  F  K  M  L  K  H  I  M  R  D  K  Q  L  R  H  I  P  V  I   : M  M  S  S  Q  D  E  V  S  I  V  I  K  C  L  K  F  G  A  A  D  Y  L  V  K  P  L  R  T  N  E  L  L  N  L  W  T  H  M  W  R  R  R  R  M  :  L  G  L  V  E  K  N  I  I  N  Y  D  F  N  L  V  V  S  E  P  S  D  P  N  T  N  S  T  T  L  F  S  D  D  T  D  D  K  S  W  K  C  V  N  P  E  I  C  P  S  T  M  L  Q  E  E  A  R  C  K  V  E  K  Q  V  L  L  K  L  L  L  K  A  F  L  A  H  S  C  N  H  Q  N  L  S   </first_frame>
            <second_frame>  F  C  *  R  A  P  T  S  P  S  T  G  I  Y  Y  V  Y  I  L  I  G  D  S  E  F  R  P  V  Y  I  G  R  R  L  T  W  *  N  R  N  G  R  S  F  *  I  D  C  S  A  F  L  L  Y  R  A  Q  C  N  R  L  L  L  N  E  L  D  W  M  T  T  *  S  A  R  *  C  C  A  E  L  T  A  I  T  L  I  I  V  V  F  *  S  L  *  W  S  G  K  *  *  *  W  K  F  F  N  N  S  F  G  R  A  R  V  V  L  E  P  *  F  L  F  F  F  V  *  W  L  W  R  R  M  R  L  *  G  Q  G  M  G  L  L  T  G  V  K  L  G  F  C  C  V  I  A  M  P  K  A  R  R  K  F  L  L  S  C  A  N  V  L  I  K  :  *  Y  Q  *  G  H  P  D  R  *  L  M  H  *  M  Q  K  D  L  I  S  I  S  S  F  Q  K  L  T  F  L  C  L  K  D  L  R  C  *  S  T  L  *  G  I  S  S  C  D  T  F  Q  *  S  :  *  C  H  R  K  M  K  S  L  L  L  L  S  A  *  N  L  E  P  L  T  T  W  *  S  L  S  E  L  M  S  Y  *  T  C  G  H  T  C  G  E  E  G  E  C :   S  D  *  *  R  R  T  S  *  I  M  T  L  I  W  S  Y  Q  S  P  V  I  P  T  Q  I  A  L  L  F  S  R  M  I  P  M  I  S  H  G  S  V  L  I  Q  K  Y  V  P  L  L  C  C  K  K  K  Q  D  A  R  W  K  S  K  F  F  *  S  Y  F  *  K  R  F  *  H  I  H  V  I  T  K  I  *  V  </second_frame>
            <third_frame>   F  A  N  V  R  R  P  V  R  Q  R  G  Y  I  T  F  I  F  *  L  V  I  P  S  S  D  R  Y  I  S  V  G  G  *  L  G  E  T  E  M  A  E  V  S  R  L  I  A  L  L  S  C  C  T  V  L  S  V  T  V  C  C  *  M  N  W  I  G  *  L  R  D  Q  Q  D  D  A  V  L  N  *  Q  P  *  L  *  L  L  *  F  F  D  P  C  S  G  A  G  S  N  S  N  G  S  S  S  I  T  V  L  G  E  L  G  L  Y  *  N  P  N  F  Y  F  F  L  C  N  G  Y  G  E  E  *  D  C  E  D  R  G  W  V  Y  *  Q  E  *  S  *  D  F  A  V  *  *  R  C  Q  K  L  G  G  S  F  Y  S  L  V  Q  M  F  L  S  S :   D  I  S  E  V  T  Q  T  G  D  *  C  I  E  C  R  R  T  S  Y  R  S  H  P  F  R  S  *  P  S  Y  V  *  R  I  *  D  V  E  A  H  Y  E  G  *  A  V  A  T  H  S  S  D  H :   D  V  I  A  R  *  S  L  Y  C  Y  *  V  P  E  I  W  S  R  *  L  P  G  K  A  S  Q  N  *  *  A  I  E  L  V  D  T  H  V  E  K  K  E  N   : A  R  T  S  R  E  E  H  H  K  L  *  L  *  S  G  R  I  R  A  Q  *  S  Q  H  K  *  H  Y  S  F  L  G  *  Y  R  *  *  V  M  E  V  C  *  S  R  N  M  S  L  Y  Y  A  A  R  R  S  K  M  Q  G  G  K  A  S  S  F  E  V  T  F  E  S  V  S  S  T  F  M  *  S  P  K  F  K  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23520" stop="23697"/>
                    <exon start="24812" stop="24973"/>
                    <exon start="25061" stop="25194"/>
                    <exon start="25577" stop="25831"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GCIRTLIFIFFCVMVMEKNETVRTGDGFIDRSKVRILLCDSDAKSSEEVFTLLCKCSYQVISVRSPRQVIDALNAEGPHIDLILSEVDLPMSKGFKMLKHIMRDKQLRHIPVIMMSSQDEVSIVIKCLKFGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNIINYDFNLVVSEPSDPNTNSTTLFSDDTDDKSWKCVNPEICPSTMLQEEARCKVEKQVLLKLLLKAFLAHSCNHQNLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="26350" PGL_stop="27668"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26350" e_stop="26868"/>
            <exon e_start="27652" e_stop="27668"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26350" e_stop="26868" e_length="519"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="26869" i_stop="27651" i_length="783"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27652" e_stop="27668" e_length="17"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26350" stop="26868"/>
              <exon start="27652" stop="27668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTGGATAGTACTCAAAGACTTATTATCAGAAAAAAAAAAACTTAAGACTTCTAATACAAATTGCAGTAACTTGCGATTCTGATATCCCAACACATGGGTGGTACCTTTTATTGGTAGCAGCACCAGGCTCTCCTTGAGTTATACTAGTGAGAAGTTATGTTTTGTAGCTACAGATAATAAATGCACCTTTTGTATAAATTGCTGTAATTTGCAGTTCTATTGTCCCAATACCTGGATAGTACATTCTATTTTGAGCAGCAATCTCCAAGTGCTCCTTAGTCCAAAATGTATTAGTGACAGATCATGTTCTGTAGCTACAGATGACAAATGTTCTTTGGCAAAAGTTGCTTCTTATCAAACATTGTTGAACTAACATGTGTCTCTTGTGCGTTTATTATCTGTCATTTCTATGTTTTCAGTCTAATGCTTCAACTGATGCTGCTCCCATAGAGACTGCGGTTGTAGTTCCATTTGAACATCCGCCTAATGCACCAGGAACTGATGATCAAAGCACAG : GAGAAATTTCACTATTT</gDNA_template>
            <first_frame> F  V  D  S  T  Q  R  L  I  I  R  K  K  K  T  *  D  F  *  Y  K  L  Q  *  L  A  I  L  I  S  Q  H  M  G  G  T  F  Y  W  *  Q  H  Q  A  L  L  E  L  Y  *  *  E  V  M  F  C  S  Y  R  *  *  M  H  L  L  Y  K  L  L  *  F  A  V  L  L  S  Q  Y  L  D  S  T  F  Y  F  E  Q  Q  S  P  S  A  P  *  S  K  M  Y  *  *  Q  I  M  F  C  S  Y  R  *  Q  M  F  F  G  K  S  C  F  L  S  N  I  V  E  L  T  C  V  S  C  A  F  I  I  C  H  F  Y  V  F  S  L  M  L  Q  L  M  L  L  P  *  R  L  R  L  *  F  H  L  N  I  R  L  M  H  Q  E  L  M  I  K  A  Q  :  E  K  F  H  Y   </first_frame>
            <second_frame>  L  W  I  V  L  K  D  L  L  S  E  K  K  K  L  K  T  S  N  T  N  C  S  N  L  R  F  *  Y  P  N  T  W  V  V  P  F  I  G  S  S  T  R  L  S  L  S  Y  T  S  E  K  L  C  F  V  A  T  D  N  K  C  T  F  C  I  N  C  C  N  L  Q  F  Y  C  P  N  T  W  I  V  H  S  I  L  S  S  N  L  Q  V  L  L  S  P  K  C  I  S  D  R  S  C  S  V  A  T  D  D  K  C  S  L  A  K  V  A  S  Y  Q  T  L  L  N  *  H  V  S  L  V  R  L  L  S  V  I  S  M  F  S  V  *  C  F  N  *  C  C  S  H  R  D  C  G  C  S  S  I  *  T  S  A  *  C  T  R  N  *  *  S  K  H  R :   R  N  F  T  I  </second_frame>
            <third_frame>   C  G  *  Y  S  K  T  Y  Y  Q  K  K  K  N  L  R  L  L  I  Q  I  A  V  T  C  D  S  D  I  P  T  H  G  W  Y  L  L  L  V  A  A  P  G  S  P  *  V  I  L  V  R  S  Y  V  L  *  L  Q  I  I  N  A  P  F  V  *  I  A  V  I  C  S  S  I  V  P  I  P  G  *  Y  I  L  F  *  A  A  I  S  K  C  S  L  V  Q  N  V  L  V  T  D  H  V  L  *  L  Q  M  T  N  V  L  W  Q  K  L  L  L  I  K  H  C  *  T  N  M  C  L  L  C  V  Y  Y  L  S  F  L  C  F  Q  S  N  A  S  T  D  A  A  P  I  E  T  A  V  V  V  P  F  E  H  P  P  N  A  P  G  T  D  D  Q  S  T   : G  E  I  S  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26435" stop="26725"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YPNTWVVPFIGSSTRLSLSYTSEKLCFVATDNKCTFCINCCNLQFYCPNTWIVHSILSSNLQVLLSPKCISDRSCSVATDDKCSLAKVASYQTLLN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27828" PGL_stop="28622"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27880" e_stop="28622"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27880" e_stop="28622" e_length="743"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27880" stop="28622"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27881" stop="28485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAGGTGCATATGCATCTCAAAAATGAGGCTCAGCATGATGTTTCCAGTTTTCATGCACAAACTCCTTATCCCTATTATATTTCAGGAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCAATGGGCAGCCTTCTTCAGCAGGCAATGACGATGTTGAAGAAGAGGAAGTACAAATAGAATATGTGGATTCTTCACACGAGGATGATCTGTGAACATGTCAGTTGATTGCAACTTTGTGATAGTTCTCTTGTATTATC</gDNA_template>
            <first_frame> V  M  A  M  T  I  F  Q  R  L  L  L  S  R  G  H  V  L  P  L  Y  H  R  N  F  H  T  T  G  T  Q  K  W  R  N  S  L  R  C  I  C  I  S  K  M  R  L  S  M  M  F  P  V  F  M  H  K  L  L  I  P  I  I  F  Q  E  *  *  I  K  S  *  C  R  Q  L  K  Y  I  T  R  A  C  N  I  S  I  I  M  L  I  Q  L  C  C  L  N  T  I  I  C  R  N  I  L  I  C  M  E  Y  H  H  I  L  S  T  R  S  A  C  A  Y  N  Q  V  N  C  Q  Q  H  I  H  G  I  R  L  A  V  H  L  L  P  K  S  R  *  A  K  L  I  L  E  R  Q  L  *  *  S  S  D  K  R  E  R  K  D  V  L  T  R  R  L  G  I  L  T  G  S  K  *  Q  S  R  D  R  V  *  G  D  S  L  *  G  R  S  M  V  *  M  *  M  S  M  G  S  L  L  Q  Q  A  M  T  M  L  K  K  R  K  Y  K  *  N  M  W  I  L  H  T  R  M  I  C  E  H  V  S  *  L  Q  L  C  D  S  S  L  V  L   </first_frame>
            <second_frame>  *  W  L  *  Q  Y  S  N  V  F  Y  Y  R  E  V  M  Y  S  P  F  I  T  G  I  S  T  P  L  E  L  K  N  G  G  I  L  S  G  A  Y  A  S  Q  K  *  G  S  A  *  C  F  Q  F  S  C  T  N  S  L  S  L  L  Y  F  R  S  N  E  S  S  H  D  A  V  N  S  N  I  S  R  E  P  A  T  S  P  *  S  C  *  F  S  Y  V  A  S  I  Q  L  Y  A  A  I  S  S  Y  A  W  N  I  I  I  S  F  L  P  D  R  H  V  L  T  T  R  S  I  A  S  S  T  S  M  A  F  V  W  Q  F  I  F  C  R  N  Q  G  E  Q  S  *  S  *  R  D  S  F  D  E  V  Q  T  K  E  K  G  K  M  F  *  Q  E  D  *  V  Y  *  P  E  A  S  S  R  A  E  T  A  F  E  G  T  V  C  K  E  G  Q  W  C  E  C  R  C  Q  W  A  A  F  F  S  R  Q  *  R  C  *  R  R  G  S  T  N  R  I  C  G  F  F  T  R  G  *  S  V  N  M  S  V  D  C  N  F  V  I  V  L  L  Y  Y  </second_frame>
            <third_frame>   D  G  Y  D  N  I  P  T  S  F  T  I  E  R  S  C  T  P  P  L  S  Q  E  F  P  H  H  W  N  S  K  M  E  E  F  S  Q  V  H  M  H  L  K  N  E  A  Q  H  D  V  S  S  F  H  A  Q  T  P  Y  P  Y  Y  I  S  G  V  M  N  Q  V  M  M  P  S  T  Q  I  Y  H  E  S  L  Q  H  L  H  N  H  A  N  S  A  M  L  P  Q  Y  N  Y  M  P  Q  Y  P  H  M  H  G  I  S  S  Y  P  F  Y  P  I  G  M  C  L  Q  P  G  Q  L  P  A  A  H  P  W  H  S  F  G  S  S  S  S  A  E  I  K  V  S  K  V  D  L  R  E  T  A  L  M  K  F  R  Q  K  R  K  E  R  C  F  D  K  K  I  R  Y  I  N  R  K  Q  V  A  E  Q  R  P  R  L  R  G  Q  F  V  R  K  V  N  G  V  N  V  D  V  N  G  Q  P  S  S  A  G  N  D  D  V  E  E  E  E  V  Q  I  E  Y  V  D  S  S  H  E  D  D  L  *  T  C  Q  L  I  A  T  L  *  *  F  S  C  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27882" stop="28577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DGYDNIPTSFTIERSCTPPLSQEFPHHWNSKMEEFSQVHMHLKNEAQHDVSSFHAQTPYPYYISGVMNQVMMPSTQIYHESLQHLHNHANSAMLPQYNYMPQYPHMHGISSYPFYPIGMCLQPGQLPAAHPWHSFGSSSSAEIKVSKVDLRETALMKFRQKRKERCFDKKIRYINRKQVAEQRPRLRGQFVRKVNGVNVDVNGQPSSAGNDDVEEEEVQIEYVDSSHEDDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27828" e_stop="27992"/>
            <exon e_start="28075" e_stop="28491"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.476" acc_prob="0.988" e_score="0.836"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.836">
            <gDNA_exon_boundary e_start="27828" e_stop="27992" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="0.476" acc_prob="0.988">
            <gDNA_intron_boundary i_start="27993" i_stop="28074" i_length="82"/>
          </intron>
          <exon e_serial="2" e_score="0.964">
            <gDNA_exon_boundary e_start="28075" e_stop="28491" e_length="417"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27828" stop="27992"/>
              <exon start="28075" stop="28491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476628" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACATTGATTCGAACATACAAGTCACTGGAGATGTAGAAAGTCACTTGCAAGGTGATGGCTATGACAATATTCCAACGTCTTTTACTATCGAGAGGTCATGTACTCCCCCTTTATCACAGGAATTTCCACACCACTGGAACTCAAAAATGGAGGAATTCTCTCAG : GAGTAATGAATCAAGTCATGATGCCGTCAACTCAAATATATCACGAGAGCCTGCAACATCTCCATAATCATGCTAATTCAGCTATGTTGCCTCAATACAATTATATGCCGCAATATCCTCATATGCATGGAATATCATCATATCCTTTCTACCCGATCGGCATGTGCTTACAACCAGGTCAATTGCCAGCAGCACATCCATGGCATTCGTTTGGCAGTTCATCTTCTGCCGAAATCAAGGTGAGCAAAGTTGATCTTAGAGAGACAGCTTTGATGAAGTTCAGACAAAAGAGAAAGGAAAGATGTTTTGACAAGAAGATTAGGTATATTAACCGGAAGCAAGTAGCAGAGCAGAGACCGCGTTTGAGGGGACAGTTTGTAAGGAAGGTCAATGGTGTGAATGTAGATGTCAATGGGC</gDNA_template>
            <first_frame> H  I  D  S  N  I  Q  V  T  G  D  V  E  S  H  L  Q  G  D  G  Y  D  N  I  P  T  S  F  T  I  E  R  S  C  T  P  P  L  S  Q  E  F  P  H  H  W  N  S  K  M  E  E  F  S  Q  :  E  *  *  I  K  S  *  C  R  Q  L  K  Y  I  T  R  A  C  N  I  S  I  I  M  L  I  Q  L  C  C  L  N  T  I  I  C  R  N  I  L  I  C  M  E  Y  H  H  I  L  S  T  R  S  A  C  A  Y  N  Q  V  N  C  Q  Q  H  I  H  G  I  R  L  A  V  H  L  L  P  K  S  R  *  A  K  L  I  L  E  R  Q  L  *  *  S  S  D  K  R  E  R  K  D  V  L  T  R  R  L  G  I  L  T  G  S  K  *  Q  S  R  D  R  V  *  G  D  S  L  *  G  R  S  M  V  *  M  *  M  S  M  G </first_frame>
            <second_frame>  T  L  I  R  T  Y  K  S  L  E  M  *  K  V  T  C  K  V  M  A  M  T  I  F  Q  R  L  L  L  S  R  G  H  V  L  P  L  Y  H  R  N  F  H  T  T  G  T  Q  K  W  R  N  S  L  R :   S  N  E  S  S  H  D  A  V  N  S  N  I  S  R  E  P  A  T  S  P  *  S  C  *  F  S  Y  V  A  S  I  Q  L  Y  A  A  I  S  S  Y  A  W  N  I  I  I  S  F  L  P  D  R  H  V  L  T  T  R  S  I  A  S  S  T  S  M  A  F  V  W  Q  F  I  F  C  R  N  Q  G  E  Q  S  *  S  *  R  D  S  F  D  E  V  Q  T  K  E  K  G  K  M  F  *  Q  E  D  *  V  Y  *  P  E  A  S  S  R  A  E  T  A  F  E  G  T  V  C  K  E  G  Q  W  C  E  C  R  C  Q  W   </second_frame>
            <third_frame>   H  *  F  E  H  T  S  H  W  R  C  R  K  S  L  A  R  *  W  L  *  Q  Y  S  N  V  F  Y  Y  R  E  V  M  Y  S  P  F  I  T  G  I  S  T  P  L  E  L  K  N  G  G  I  L  S   : G  V  M  N  Q  V  M  M  P  S  T  Q  I  Y  H  E  S  L  Q  H  L  H  N  H  A  N  S  A  M  L  P  Q  Y  N  Y  M  P  Q  Y  P  H  M  H  G  I  S  S  Y  P  F  Y  P  I  G  M  C  L  Q  P  G  Q  L  P  A  A  H  P  W  H  S  F  G  S  S  S  S  A  E  I  K  V  S  K  V  D  L  R  E  T  A  L  M  K  F  R  Q  K  R  K  E  R  C  F  D  K  K  I  R  Y  I  N  R  K  Q  V  A  E  Q  R  P  R  L  R  G  Q  F  V  R  K  V  N  G  V  N  V  D  V  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27893" stop="27992"/>
                    <exon start="28075" stop="28490"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYSNVFYYREVMYSPFITGISTPLELKNGGILSGVMNQVMMPSTQIYHESLQHLHNHANSAMLPQYNYMPQYPHMHGISSYPFYPIGMCLQPGQLPAAHPWHSFGSSSSAEIKVSKVDLRETALMKFRQKRKERCFDKKIRYINRKQVAEQRPRLRGQFVRKVNGVNVDVNG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="28667" PGL_stop="29136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28667" e_stop="29136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="28667" e_stop="29136" e_length="470"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28667" stop="29136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28667" stop="29136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28667" stop="29136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAATAACGCCTTGATCTACATGCTCACAAATGGCACAAGCTTGCTTTCAGCTGCCAATCAAAGGCACCTGCGATCTACATGCAGCATCGGGGTGCAATGAGATTGACCTGCTCCCTATCGCTTTCATTCCTGTGATTTTGAGCTTTAAGTGGATACTCTTGAGAGCACCCTGGACATGAGATCTCATGTGTGGCAGGTACTATGGTTTTGCCATGTTATGTTATGTCCCTGGAAGTAAAAGTTGTTAGATCCATGTTCGAACGAGGGAAGTAGAGCCACAATGCACTTTGACAGTGCAAAAAAGTAACGAGATCACTGTGACATTCCCCCTGAGGGAAGTTTCATGAAGTTTACCATATGAAATTAAATGTAATAGACTGATCATATAGTAATCTTCTGACACTTTGTTGTAATGATTAAGTTCATAATGCAACATGTTATTCAGCAGTTGGCGTTACCAAACAAATG</gDNA_template>
            <first_frame> Q  N  N  A  L  I  Y  M  L  T  N  G  T  S  L  L  S  A  A  N  Q  R  H  L  R  S  T  C  S  I  G  V  Q  *  D  *  P  A  P  Y  R  F  H  S  C  D  F  E  L  *  V  D  T  L  E  S  T  L  D  M  R  S  H  V  W  Q  V  L  W  F  C  H  V  M  L  C  P  W  K  *  K  L  L  D  P  C  S  N  E  G  S  R  A  T  M  H  F  D  S  A  K  K  *  R  D  H  C  D  I  P  P  E  G  S  F  M  K  F  T  I  *  N  *  M  *  *  T  D  H  I  V  I  F  *  H  F  V  V  M  I  K  F  I  M  Q  H  V  I  Q  Q  L  A  L  P  N  K   </first_frame>
            <second_frame>  R  I  T  P  *  S  T  C  S  Q  M  A  Q  A  C  F  Q  L  P  I  K  G  T  C  D  L  H  A  A  S  G  C  N  E  I  D  L  L  P  I  A  F  I  P  V  I  L  S  F  K  W  I  L  L  R  A  P  W  T  *  D  L  M  C  G  R  Y  Y  G  F  A  M  L  C  Y  V  P  G  S  K  S  C  *  I  H  V  R  T  R  E  V  E  P  Q  C  T  L  T  V  Q  K  S  N  E  I  T  V  T  F  P  L  R  E  V  S  *  S  L  P  Y  E  I  K  C  N  R  L  I  I  *  *  S  S  D  T  L  L  *  *  L  S  S  *  C  N  M  L  F  S  S  W  R  Y  Q  T  N  </second_frame>
            <third_frame>   E  *  R  L  D  L  H  A  H  K  W  H  K  L  A  F  S  C  Q  S  K  A  P  A  I  Y  M  Q  H  R  G  A  M  R  L  T  C  S  L  S  L  S  F  L  *  F  *  A  L  S  G  Y  S  *  E  H  P  G  H  E  I  S  C  V  A  G  T  M  V  L  P  C  Y  V  M  S  L  E  V  K  V  V  R  S  M  F  E  R  G  K  *  S  H  N  A  L  *  Q  C  K  K  V  T  R  S  L  *  H  S  P  *  G  K  F  H  E  V  Y  H  M  K  L  N  V  I  D  *  S  Y  S  N  L  L  T  L  C  C  N  D  *  V  H  N  A  T  C  Y  S  A  V  G  V  T  K  Q  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0060G16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="44508" PGL_stop="43849"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44508" e_stop="43849"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="44508" e_stop="43849" e_length="660"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44508" stop="43849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349294" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGATGATCTAGTTAGGGAAGTAATGATATTCAGGGCTATGTTCCACACGGCATTTATTCGCTCAAATGTTTTGATGTTAACTCGTGATGAAGTTGATGTCCCATGGGATGCAAAAGACCAATTTTCCAGGGAGTTCAAAGCAGAGGTTTGGTATTTATTCCTCTGAACTTGGCCCTTTTTCCTTTATCCTTTAACACGAACTACAGGAGTTGAATAATGCTCATTTCTGTACCAGGTACTCTTTTCGGACGCTGATGCTCTTCCACCTATTATAACCACTGAAGCACCAGACGAGGATGATAATGCAACTGAGGGAGCTTCACCCGACGAGTTCTTTGAGGTGGAAGAGATATTCAGCAATGCTGTTGATGCACAGGATGGAAGAGGGGAATCTGATGCCCATTCAGTTCAAGACAGTATGCAGGATGATGACAACATTGAAACATGGAAAGAAGAGTTGGAGCATCATGCCTTTCAAGATTGTTCATTTGTTGAAGGTCATCGCAAACTAGAAGAAAATATGGATTCTACTCAACAAGCATCAAAAACAAATGGTTTAGGGGATAGGGACCACTTGATTAACTCCGAGGCTGTTATTTCTGATGTTTCTAGTCGCAAAGATTCAGTAGCACAAACATCGGGGGCAAATGTCATGTC</gDNA_template>
            <first_frame> G  R  *  S  S  *  G  S  N  D  I  Q  G  Y  V  P  H  G  I  Y  S  L  K  C  F  D  V  N  S  *  *  S  *  C  P  M  G  C  K  R  P  I  F  Q  G  V  Q  S  R  G  L  V  F  I  P  L  N  L  A  L  F  P  L  S  F  N  T  N  Y  R  S  *  I  M  L  I  S  V  P  G  T  L  F  G  R  *  C  S  S  T  Y  Y  N  H  *  S  T  R  R  G  *  *  C  N  *  G  S  F  T  R  R  V  L  *  G  G  R  D  I  Q  Q  C  C  *  C  T  G  W  K  R  G  I  *  C  P  F  S  S  R  Q  Y  A  G  *  *  Q  H  *  N  M  E  R  R  V  G  A  S  C  L  S  R  L  F  I  C  *  R  S  S  Q  T  R  R  K  Y  G  F  Y  S  T  S  I  K  N  K  W  F  R  G  *  G  P  L  D  *  L  R  G  C  Y  F  *  C  F  *  S  Q  R  F  S  S  T  N  I  G  G  K  C  H  V </first_frame>
            <second_frame>  E  D  D  L  V  R  E  V  M  I  F  R  A  M  F  H  T  A  F  I  R  S  N  V  L  M  L  T  R  D  E  V  D  V  P  W  D  A  K  D  Q  F  S  R  E  F  K  A  E  V  W  Y  L  F  L  *  T  W  P  F  F  L  Y  P  L  T  R  T  T  G  V  E  *  C  S  F  L  Y  Q  V  L  F  S  D  A  D  A  L  P  P  I  I  T  T  E  A  P  D  E  D  D  N  A  T  E  G  A  S  P  D  E  F  F  E  V  E  E  I  F  S  N  A  V  D  A  Q  D  G  R  G  E  S  D  A  H  S  V  Q  D  S  M  Q  D  D  D  N  I  E  T  W  K  E  E  L  E  H  H  A  F  Q  D  C  S  F  V  E  G  H  R  K  L  E  E  N  M  D  S  T  Q  Q  A  S  K  T  N  G  L  G  D  R  D  H  L  I  N  S  E  A  V  I  S  D  V  S  S  R  K  D  S  V  A  Q  T  S  G  A  N  V  M   </second_frame>
            <third_frame>   K  M  I  *  L  G  K  *  *  Y  S  G  L  C  S  T  R  H  L  F  A  Q  M  F  *  C  *  L  V  M  K  L  M  S  H  G  M  Q  K  T  N  F  P  G  S  S  K  Q  R  F  G  I  Y  S  S  E  L  G  P  F  S  F  I  L  *  H  E  L  Q  E  L  N  N  A  H  F  C  T  R  Y  S  F  R  T  L  M  L  F  H  L  L  *  P  L  K  H  Q  T  R  M  I  M  Q  L  R  E  L  H  P  T  S  S  L  R  W  K  R  Y  S  A  M  L  L  M  H  R  M  E  E  G  N  L  M  P  I  Q  F  K  T  V  C  R  M  M  T  T  L  K  H  G  K  K  S  W  S  I  M  P  F  K  I  V  H  L  L  K  V  I  A  N  *  K  K  I  W  I  L  L  N  K  H  Q  K  Q  M  V  *  G  I  G  T  T  *  L  T  P  R  L  L  F  L  M  F  L  V  A  K  I  Q  *  H  K  H  R  G  Q  M  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44288" stop="43851"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSFLYQVLFSDADALPPIITTEAPDEDDNATEGASPDEFFEVEEIFSNAVDAQDGRGESDAHSVQDSMQDDDNIETWKEELEHHAFQDCSFVEGHRKLEENMDSTQQASKTNGLGDRDHLINSEAVISDVSSRKDSVAQTSGANVM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="52762" PGL_stop="53354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52762" e_stop="53354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="52762" e_stop="53354" e_length="593"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52762" stop="53354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288268" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGTCTACTTGCACCATGATTGCTACCCTTGCATTGTCCACAGAGATGTCAAAGCTAACAACGTGCTTCTTGACAAGGACGGAAGAGCAAAAGTCACCGATTTTGGCCTTGCCAGGGTCATGATTTCTGAACATACTCATGTTAGCACAATGGTGGCAGGGACTATTGGTTATGTTGCACCAGAATATGGGCAGATAATGCAGGCCACTACAAAAGGAGATGTCTACAGCTATGGGGTGCTAGCAATGGAGCTAGCAACTGGGAGGCATGCTATAGATGGGGGCGAAGAATGTCTAGTTGAATGGGCGACAAGGGTCATGGGAGACGGAAGGAAAGGGTTCACCAGAGCCATTATACCAGATGCTCTATTGGTACCTGGCCTAGTAGAGGGAGCAGAGGAAATGTATGAGTTGCTTAGGATTGGGATAAGGTGCACAGCTGAGACGCCTCATGACCGGCCTAACATGAAGCAGGTATTAGATATGTTGATTAGTGTTCCTAGCAGCCAAAAGGGATCCAGCCGTAGCTTTGGATCAAGTCGTAGCACTTCTCCATTATTATGATAGACTCTCTTGGAATCCAAGAGATCAAAA</gDNA_template>
            <first_frame> *  S  T  C  T  M  I  A  T  L  A  L  S  T  E  M  S  K  L  T  T  C  F  L  T  R  T  E  E  Q  K  S  P  I  L  A  L  P  G  S  *  F  L  N  I  L  M  L  A  Q  W  W  Q  G  L  L  V  M  L  H  Q  N  M  G  R  *  C  R  P  L  Q  K  E  M  S  T  A  M  G  C  *  Q  W  S  *  Q  L  G  G  M  L  *  M  G  A  K  N  V  *  L  N  G  R  Q  G  S  W  E  T  E  G  K  G  S  P  E  P  L  Y  Q  M  L  Y  W  Y  L  A  *  *  R  E  Q  R  K  C  M  S  C  L  G  L  G  *  G  A  Q  L  R  R  L  M  T  G  L  T  *  S  R  Y  *  I  C  *  L  V  F  L  A  A  K  R  D  P  A  V  A  L  D  Q  V  V  A  L  L  H  Y  Y  D  R  L  S  W  N  P  R  D  Q   </first_frame>
            <second_frame>  S  L  L  A  P  *  L  L  P  L  H  C  P  Q  R  C  Q  S  *  Q  R  A  S  *  Q  G  R  K  S  K  S  H  R  F  W  P  C  Q  G  H  D  F  *  T  Y  S  C  *  H  N  G  G  R  D  Y  W  L  C  C  T  R  I  W  A  D  N  A  G  H  Y  K  R  R  C  L  Q  L  W  G  A  S  N  G  A  S  N  W  E  A  C  Y  R  W  G  R  R  M  S  S  *  M  G  D  K  G  H  G  R  R  K  E  R  V  H  Q  S  H  Y  T  R  C  S  I  G  T  W  P  S  R  G  S  R  G  N  V  *  V  A  *  D  W  D  K  V  H  S  *  D  A  S  *  P  A  *  H  E  A  G  I  R  Y  V  D  *  C  S  *  Q  P  K  G  I  Q  P  *  L  W  I  K  S  *  H  F  S  I  I  M  I  D  S  L  G  I  Q  E  I  K  </second_frame>
            <third_frame>   V  Y  L  H  H  D  C  Y  P  C  I  V  H  R  D  V  K  A  N  N  V  L  L  D  K  D  G  R  A  K  V  T  D  F  G  L  A  R  V  M  I  S  E  H  T  H  V  S  T  M  V  A  G  T  I  G  Y  V  A  P  E  Y  G  Q  I  M  Q  A  T  T  K  G  D  V  Y  S  Y  G  V  L  A  M  E  L  A  T  G  R  H  A  I  D  G  G  E  E  C  L  V  E  W  A  T  R  V  M  G  D  G  R  K  G  F  T  R  A  I  I  P  D  A  L  L  V  P  G  L  V  E  G  A  E  E  M  Y  E  L  L  R  I  G  I  R  C  T  A  E  T  P  H  D  R  P  N  M  K  Q  V  L  D  M  L  I  S  V  P  S  S  Q  K  G  S  S  R  S  F  G  S  S  R  S  T  S  P  L  L  *  *  T  L  L  E  S  K  R  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52764" stop="53324"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYLHHDCYPCIVHRDVKANNVLLDKDGRAKVTDFGLARVMISEHTHVSTMVAGTIGYVAPEYGQIMQATTKGDVYSYGVLAMELATGRHAIDGGEECLVEWATRVMGDGRKGFTRAIIPDALLVPGLVEGAEEMYELLRIGIRCTAETPHDRPNMKQVLDMLISVPSSQKGSSRSFGSSRSTSPLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="56308" PGL_stop="57454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56308" e_stop="56465"/>
            <exon e_start="56771" e_stop="57150"/>
            <exon e_start="57444" e_stop="57454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.855" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.173" e_score="1.000"/>
          <exon-only e_score="0.636"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56308" e_stop="56465" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.855" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56466" i_stop="56770" i_length="305"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56771" e_stop="57150" e_length="380"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.173">
            <gDNA_intron_boundary i_start="57151" i_stop="57443" i_length="293"/>
          </intron>
          <exon e_serial="3" e_score="0.636">
            <gDNA_exon_boundary e_start="57444" e_stop="57454" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56308" stop="56465"/>
              <exon start="56771" stop="57150"/>
              <exon start="57444" stop="57454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56309" stop="56465"/>
              <exon start="56771" stop="57038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311134" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAAGAAATGGAGAATAATAATTCTCATGATGATCAATATGGTAGAAAAGTGATGAAGGATGTCTCTCTTCATGAACTTAGAGAGAAACTTGTTGAATTTTCTAGAGTTAGAGGTTGGGATCAGTATCACAGTCCTAGAAACCTTCTCCTAGCTCTG : GTTGGAGAAGTGGGAGAACTATCAGAGATATTTCAGTGGAAAGGTGAAGTTGCAAGGGGTTTACCTAACTGGACATCAGATGATAAAGAACATTTGGAGGAAGAACTTTCTGATGTTTTACTCTATTTGGTTCAGCTAGCTCATGTTTGTGGACTTGATTTAGGTCAAGCAGCACTTACTAAAATTGTCAAAAATGCTCAAAAATACCCTGTTACTAAACCTACTTAATTAATTAATTGTCACAAATTAAGCTACTGTTATCTTAAAATATAGCTATACGTATGTCTCATCTCCAAAGTAAGACAAGTTATTTATTATAATGTATCAAAATTGATCAATTTCAATTTGTTTGTTTTTGTTTTAAAAATAATGTTTTTTTT : TTAAAATAGAA</gDNA_template>
            <first_frame> E  K  K  W  R  I  I  I  L  M  M  I  N  M  V  E  K  *  *  R  M  S  L  F  M  N  L  E  R  N  L  L  N  F  L  E  L  E  V  G  I  S  I  T  V  L  E  T  F  S  *  L  W :   L  E  K  W  E  N  Y  Q  R  Y  F  S  G  K  V  K  L  Q  G  V  Y  L  T  G  H  Q  M  I  K  N  I  W  R  K  N  F  L  M  F  Y  S  I  W  F  S  *  L  M  F  V  D  L  I  *  V  K  Q  H  L  L  K  L  S  K  M  L  K  N  T  L  L  L  N  L  L  N  *  L  I  V  T  N  *  A  T  V  I  L  K  Y  S  Y  T  Y  V  S  S  P  K  *  D  K  L  F  I  I  M  Y  Q  N  *  S  I  S  I  C  L  F  L  F  *  K  *  C  F  F   : F  K  I  E </first_frame>
            <second_frame>  R  R  N  G  E  *  *  F  S  *  *  S  I  W  *  K  S  D  E  G  C  L  S  S  *  T  *  R  E  T  C  *  I  F  *  S  *  R  L  G  S  V  S  Q  S  *  K  P  S  P  S  S   : G  W  R  S  G  R  T  I  R  D  I  S  V  E  R  *  S  C  K  G  F  T  *  L  D  I  R  *  *  R  T  F  G  G  R  T  F  *  C  F  T  L  F  G  S  A  S  S  C  L  W  T  *  F  R  S  S  S  T  Y  *  N  C  Q  K  C  S  K  I  P  C  Y  *  T  Y  L  I  N  *  L  S  Q  I  K  L  L  L  S  *  N  I  A  I  R  M  S  H  L  Q  S  K  T  S  Y  L  L  *  C  I  K  I  D  Q  F  Q  F  V  C  F  C  F  K  N  N  V  F  F  :  L  K  *   </second_frame>
            <third_frame>   E  E  M  E  N  N  N  S  H  D  D  Q  Y  G  R  K  V  M  K  D  V  S  L  H  E  L  R  E  K  L  V  E  F  S  R  V  R  G  W  D  Q  Y  H  S  P  R  N  L  L  L  A  L  :  V  G  E  V  G  E  L  S  E  I  F  Q  W  K  G  E  V  A  R  G  L  P  N  W  T  S  D  D  K  E  H  L  E  E  E  L  S  D  V  L  L  Y  L  V  Q  L  A  H  V  C  G  L  D  L  G  Q  A  A  L  T  K  I  V  K  N  A  Q  K  Y  P  V  T  K  P  T  *  L  I  N  C  H  K  L  S  Y  C  Y  L  K  I  *  L  Y  V  C  L  I  S  K  V  R  Q  V  I  Y  Y  N  V  S  K  L  I  N  F  N  L  F  V  F  V  L  K  I  M  F  F  F :   *  N  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56310" stop="56465"/>
                    <exon start="56771" stop="56998"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEMENNNSHDDQYGRKVMKDVSLHELREKLVEFSRVRGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVARGLPNWTSDDKEHLEEELSDVLLYLVQLAHVCGLDLGQAALTKIVKNAQKYPVTKPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="73255" PGL_stop="75107"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73255" e_stop="73288"/>
            <exon e_start="74251" e_stop="74314"/>
            <exon e_start="74419" e_stop="75107"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.581" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73255" e_stop="73288" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.856">
            <gDNA_intron_boundary i_start="73289" i_stop="74250" i_length="962"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74251" e_stop="74314" e_length="64"/>
          </exon>
          <intron i_serial="2" don_prob="0.581" acc_prob="0.888">
            <gDNA_intron_boundary i_start="74315" i_stop="74418" i_length="104"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74419" e_stop="75107" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73255" stop="73288"/>
              <exon start="74251" stop="74314"/>
              <exon start="74419" stop="74778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73268" stop="73288"/>
              <exon start="74251" stop="74314"/>
              <exon start="74419" stop="75107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74251" stop="74314"/>
              <exon start="74419" stop="74787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGGTCCCTCTTCCTTACATCTAAGTAAAAG : GACTCCAAACGTGTGAAGTTGACGGTTCAAAAAGCACTCTGGTACTTCTTGCTTTCAGGTTCCG : GGGTGTTGGTTTGCTATTTCATTTCCTTCTCTTACAATGGCTGATGGAATACCTGAAAACCTGGAGAAAATCGAGCCTATAGTAAATCGTGTGAGAAGGAATTCAACCGGAAGTGTAGGCTTTGAAATGGGAGGATACAAGGTCTTGTCACGTTATCTTGACGTTCCAAGAAGTTCATGCCATGATATGTGCAAACATGGTTATGAACATGATTCTCCAACGAAGGCTAAGATTCCTCGGCCCTCAAGAGCAACATTAGGGAAAATCCTAGAAAGGAAGAAAGTACCAGGCTCAACTAAACTACCTTCTGAGATCAGGAGCCAGACAACTTGCCAAGTCAATGGACAGGAAATGCAATCGTCCACCAAAAGATTAGCGCCTTCTGGAAATCAACAAAGTGAGTCCAAGCTTAAGCCTTTGGAAGAAAATGCATCAAGAAGGCATCAAAGAAGATACAGTGACAACTTTATACCAGGGAATTCTTCGAAACTTCAAGAGTCTCTATCAAATGGATCAAGCAGTAGACAAAACCAGAGCTGTAAAATGGAGAAAGACAGTGGATCCTCCGAGCTAAGCAAGAAAAAGAATATTGTTACCTCAACTGTTGCATTGTCTCCAAAATCTTCTGTGAAAAAAGTATCGAGCACAATATCCAGTAACAACTCCCCCAGAAAGGCATCTCAACTTAA</gDNA_template>
            <first_frame> F  G  V  P  L  P  Y  I  *  V  K   : G  L  Q  T  C  E  V  D  G  S  K  S  T  L  V  L  L  A  F  R  F  R :   G  V  G  L  L  F  H  F  L  L  L  Q  W  L  M  E  Y  L  K  T  W  R  K  S  S  L  *  *  I  V  *  E  G  I  Q  P  E  V  *  A  L  K  W  E  D  T  R  S  C  H  V  I  L  T  F  Q  E  V  H  A  M  I  C  A  N  M  V  M  N  M  I  L  Q  R  R  L  R  F  L  G  P  Q  E  Q  H  *  G  K  S  *  K  G  R  K  Y  Q  A  Q  L  N  Y  L  L  R  S  G  A  R  Q  L  A  K  S  M  D  R  K  C  N  R  P  P  K  D  *  R  L  L  E  I  N  K  V  S  P  S  L  S  L  W  K  K  M  H  Q  E  G  I  K  E  D  T  V  T  T  L  Y  Q  G  I  L  R  N  F  K  S  L  Y  Q  M  D  Q  A  V  D  K  T  R  A  V  K  W  R  K  T  V  D  P  P  S  *  A  R  K  R  I  L  L  P  Q  L  L  H  C  L  Q  N  L  L  *  K  K  Y  R  A  Q  Y  P  V  T  T  P  P  E  R  H  L  N  L  </first_frame>
            <second_frame>  L  G  S  L  F  L  T  S  K  *  K  :  D  S  K  R  V  K  L  T  V  Q  K  A  L  W  Y  F  L  L  S  G  S   : G  V  L  V  C  Y  F  I  S  F  S  Y  N  G  *  W  N  T  *  K  P  G  E  N  R  A  Y  S  K  S  C  E  K  E  F  N  R  K  C  R  L  *  N  G  R  I  Q  G  L  V  T  L  S  *  R  S  K  K  F  M  P  *  Y  V  Q  T  W  L  *  T  *  F  S  N  E  G  *  D  S  S  A  L  K  S  N  I  R  E  N  P  R  K  E  E  S  T  R  L  N  *  T  T  F  *  D  Q  E  P  D  N  L  P  S  Q  W  T  G  N  A  I  V  H  Q  K  I  S  A  F  W  K  S  T  K  *  V  Q  A  *  A  F  G  R  K  C  I  K  K  A  S  K  K  I  Q  *  Q  L  Y  T  R  E  F  F  E  T  S  R  V  S  I  K  W  I  K  Q  *  T  K  P  E  L  *  N  G  E  R  Q  W  I  L  R  A  K  Q  E  K  E  Y  C  Y  L  N  C  C  I  V  S  K  I  F  C  E  K  S  I  E  H  N  I  Q  *  Q  L  P  Q  K  G  I  S  T  * </second_frame>
            <third_frame>   W  G  P  S  S  L  H  L  S  K  R :   T  P  N  V  *  S  *  R  F  K  K  H  S  G  T  S  C  F  Q  V  P  :  G  C  W  F  A  I  S  F  P  S  L  T  M  A  D  G  I  P  E  N  L  E  K  I  E  P  I  V  N  R  V  R  R  N  S  T  G  S  V  G  F  E  M  G  G  Y  K  V  L  S  R  Y  L  D  V  P  R  S  S  C  H  D  M  C  K  H  G  Y  E  H  D  S  P  T  K  A  K  I  P  R  P  S  R  A  T  L  G  K  I  L  E  R  K  K  V  P  G  S  T  K  L  P  S  E  I  R  S  Q  T  T  C  Q  V  N  G  Q  E  M  Q  S  S  T  K  R  L  A  P  S  G  N  Q  Q  S  E  S  K  L  K  P  L  E  E  N  A  S  R  R  H  Q  R  R  Y  S  D  N  F  I  P  G  N  S  S  K  L  Q  E  S  L  S  N  G  S  S  S  R  Q  N  Q  S  C  K  M  E  K  D  S  G  S  S  E  L  S  K  K  K  N  I  V  T  S  T  V  A  L  S  P  K  S  S  V  K  K  V  S  S  T  I  S  S  N  N  S  P  R  K  A  S  Q  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74273" stop="74314"/>
                    <exon start="74419" stop="75105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>729</number_coding_nucleotides>
                  <number_encoded_amino_acids>243</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFKKHSGTSCFQVPGCWFAISFPSLTMADGIPENLEKIEPIVNRVRRNSTGSVGFEMGGYKVLSRYLDVPRSSCHDMCKHGYEHDSPTKAKIPRPSRATLGKILERKKVPGSTKLPSEIRSQTTCQVNGQEMQSSTKRLAPSGNQQSESKLKPLEENASRRHQRRYSDNFIPGNSSKLQESLSNGSSSRQNQSCKMEKDSGSSELSKKKNIVTSTVALSPKSSVKKVSSTISSNNSPRKASQL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="75280" PGL_stop="76341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75280" e_stop="76341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="75280" e_stop="76341" e_length="1062"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75280" stop="76095"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75281" stop="75633"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75477" stop="76325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75739" stop="76341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546816" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75740" stop="76341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGACAGTGTCTTCATCCCTTTGTTCCCCATCATTTCCACCATCTTCAGGTGGTAGTAACTCGAGAACTATTGACACCACTACCCAGTCATCCGTTTCCTCATCTTCATTGATGTCACCGTCATCAAACTCAGCAAATGAGTCTGCTCACTGTGATGGAACAAGCTCTAGCACCAGTCAAAATGGAACTACAACTCAGAAGCAAAGCACAAAACCTCGGAAAGCTGGACAACTTGGCTTAGAAAAGGAAGATTGCAGTCCTAAACAGCTCAAGTTCAAAAAAGGGAAGACAATTGATATCCAATCTGAGAAATACAGTCCGCGGAAACAAAAGTTGAGGCAAGTCACCATAAAAGATAAGGGCGAAAATGAAAATGGTAATCCAATAGGAAAAGGTTTGAGAAAATCCAATGCTGATGGCCATTCATATGCTGCGAAAGGCGAAGTTGTGACAGTAAATCTTCGATCCAATGGTATAGAGGATTCAAAAGAAACTCCAAGTTTGTTCAACAACGTGATTGAAATTACTGCAAGCAAGCTTGCCAAGACTAGGAGAAGCAAGGTCAAGGCTCTGGTGGGTGCTTTTGAAACTGTAATCTCCCTTCAGGATAAAAAATCCTCTCCAGTAATTGGAAGATCTTAACTTACATTTCTCTTTACAGAAGGAATTTGTCTGCCAGATGCAGGATTCCAAGCAGTAATCTGTATGATAATACTTTGTTACTGTCCTAGTGACTATTACTTTAGGTAGTTGTAGGGATTGATCACTCAAATTTGATTTTTAATCGAGTTAATGAGTGCTTAGAACAGTCTATTCAGAGAAATTTGGTTGAGCTTAAGACATTCTTCGATGAGTAACTCACCCATGTAAAATTTCAGTAGCTGAGGTACTTGTTAGCGTATTAAGTCTTACCATTAAGTATTGGTTTTATTCTGCATAATAGAATAGTCCAGACTTTAAAATTCTTTGTTGAGGATGACACACAGTCATCCTAATTCTTTTATGCCTGTACATATTTGCTCAATAAACAACAGAAATTTCGGAGGATTACTCTGAAGCCAA</gDNA_template>
            <first_frame> K  T  V  S  S  S  L  C  S  P  S  F  P  P  S  S  G  G  S  N  S  R  T  I  D  T  T  T  Q  S  S  V  S  S  S  S  L  M  S  P  S  S  N  S  A  N  E  S  A  H  C  D  G  T  S  S  S  T  S  Q  N  G  T  T  T  Q  K  Q  S  T  K  P  R  K  A  G  Q  L  G  L  E  K  E  D  C  S  P  K  Q  L  K  F  K  K  G  K  T  I  D  I  Q  S  E  K  Y  S  P  R  K  Q  K  L  R  Q  V  T  I  K  D  K  G  E  N  E  N  G  N  P  I  G  K  G  L  R  K  S  N  A  D  G  H  S  Y  A  A  K  G  E  V  V  T  V  N  L  R  S  N  G  I  E  D  S  K  E  T  P  S  L  F  N  N  V  I  E  I  T  A  S  K  L  A  K  T  R  R  S  K  V  K  A  L  V  G  A  F  E  T  V  I  S  L  Q  D  K  K  S  S  P  V  I  G  R  S  *  L  T  F  L  F  T  E  G  I  C  L  P  D  A  G  F  Q  A  V  I  C  M  I  I  L  C  Y  C  P  S  D  Y  Y  F  R  *  L  *  G  L  I  T  Q  I  *  F  L  I  E  L  M  S  A  *  N  S  L  F  R  E  I  W  L  S  L  R  H  S  S  M  S  N  S  P  M  *  N  F  S  S  *  G  T  C  *  R  I  K  S  Y  H  *  V  L  V  L  F  C  I  I  E  *  S  R  L  *  N  S  L  L  R  M  T  H  S  H  P  N  S  F  M  P  V  H  I  C  S  I  N  N  R  N  F  G  G  L  L  *  S  Q </first_frame>
            <second_frame>  R  Q  C  L  H  P  F  V  P  H  H  F  H  H  L  Q  V  V  V  T  R  E  L  L  T  P  L  P  S  H  P  F  P  H  L  H  *  C  H  R  H  Q  T  Q  Q  M  S  L  L  T  V  M  E  Q  A  L  A  P  V  K  M  E  L  Q  L  R  S  K  A  Q  N  L  G  K  L  D  N  L  A  *  K  R  K  I  A  V  L  N  S  S  S  S  K  K  G  R  Q  L  I  S  N  L  R  N  T  V  R  G  N  K  S  *  G  K  S  P  *  K  I  R  A  K  M  K  M  V  I  Q  *  E  K  V  *  E  N  P  M  L  M  A  I  H  M  L  R  K  A  K  L  *  Q  *  I  F  D  P  M  V  *  R  I  Q  K  K  L  Q  V  C  S  T  T  *  L  K  L  L  Q  A  S  L  P  R  L  G  E  A  R  S  R  L  W  W  V  L  L  K  L  *  S  P  F  R  I  K  N  P  L  Q  *  L  E  D  L  N  L  H  F  S  L  Q  K  E  F  V  C  Q  M  Q  D  S  K  Q  *  S  V  *  *  Y  F  V  T  V  L  V  T  I  T  L  G  S  C  R  D  *  S  L  K  F  D  F  *  S  S  *  *  V  L  R  T  V  Y  S  E  K  F  G  *  A  *  D  I  L  R  *  V  T  H  P  C  K  I  S  V  A  E  V  L  V  S  V  L  S  L  T  I  K  Y  W  F  Y  S  A  *  *  N  S  P  D  F  K  I  L  C  *  G  *  H  T  V  I  L  I  L  L  C  L  Y  I  F  A  Q  *  T  T  E  I  S  E  D  Y  S  E  A   </second_frame>
            <third_frame>   D  S  V  F  I  P  L  F  P  I  I  S  T  I  F  R  W  *  *  L  E  N  Y  *  H  H  Y  P  V  I  R  F  L  I  F  I  D  V  T  V  I  K  L  S  K  *  V  C  S  L  *  W  N  K  L  *  H  Q  S  K  W  N  Y  N  S  E  A  K  H  K  T  S  E  S  W  T  T  W  L  R  K  G  R  L  Q  S  *  T  A  Q  V  Q  K  R  E  D  N  *  Y  P  I  *  E  I  Q  S  A  E  T  K  V  E  A  S  H  H  K  R  *  G  R  K  *  K  W  *  S  N  R  K  R  F  E  K  I  Q  C  *  W  P  F  I  C  C  E  R  R  S  C  D  S  K  S  S  I  Q  W  Y  R  G  F  K  R  N  S  K  F  V  Q  Q  R  D  *  N  Y  C  K  Q  A  C  Q  D  *  E  K  Q  G  Q  G  S  G  G  C  F  *  N  C  N  L  P  S  G  *  K  I  L  S  S  N  W  K  I  L  T  Y  I  S  L  Y  R  R  N  L  S  A  R  C  R  I  P  S  S  N  L  Y  D  N  T  L  L  L  S  *  *  L  L  L  *  V  V  V  G  I  D  H  S  N  L  I  F  N  R  V  N  E  C  L  E  Q  S  I  Q  R  N  L  V  E  L  K  T  F  F  D  E  *  L  T  H  V  K  F  Q  *  L  R  Y  L  L  A  Y  *  V  L  P  L  S  I  G  F  I  L  H  N  R  I  V  Q  T  L  K  F  F  V  E  D  D  T  Q  S  S  *  F  F  Y  A  C  T  Y  L  L  N  K  Q  Q  K  F  R  R  I  T  L  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0060G16.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75280" stop="75921"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>639</number_coding_nucleotides>
                  <number_encoded_amino_acids>213</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTVSSSLCSPSFPPSSGGSNSRTIDTTTQSSVSSSSLMSPSSNSANESAHCDGTSSSTSQNGTTTQKQSTKPRKAGQLGLEKEDCSPKQLKFKKGKTIDIQSEKYSPRKQKLRQVTIKDKGENENGNPIGKGLRKSNADGHSYAAKGEVVTVNLRSNGIEDSKETPSLFNNVIEITASKLAKTRRSKVKALVGAFETVISLQDKKSSPVIGRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 49 chains have been computed
$ 
$ memory statistics:
$ 48544 bytes spliced alignments in total
$ 24 spliced alignments have been stored
$ 2022 bytes was the average size of a spliced alignment
$ 18904 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1575 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 20:56:53
-->
