<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:29:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723170" ref_strand="+" ref_description="SGN-E723170 [FC19CE09]">
      <seq>gaatacgaagaagaaaagaaaaaattacaccaaaaaagagcaaaaatggcgttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcggtacttcatttctgtttgctacttccttatttcttataattatgtgatattgagacttaatttttgtttttgttcttcttctcttagatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccccaaaggggcccctttaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6573" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6872" g_stop="7258" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="443" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9028" g_stop="9270" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="686" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="729"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E723170" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E723170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6872" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAANAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342418" ref_strand="+" ref_description="SGN-E342418 [cTOF-8-M15]">
      <seq>aaatacaccaaaaaagagcaaaaatggcgttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcnttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaagaaagtcttaacaatatatggaaatttctttataattcactttccaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6594" stop="9615"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6894" g_stop="7088" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="278" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="334" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9322" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="630" r_length="296" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E342418" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6894" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTC-TTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGT</genome_strand>
        <mrna_strand>AAATACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCNTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342264" ref_strand="+" ref_description="SGN-E342264 [cTOF-8-M13]">
      <seq>gagcaaaaatggcgtcgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcacagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgagtttgcaagtactacacggagatacagagcattgaagaagtagaaaagagatacaacgaccagtggctgcctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatggtaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttctactactacatatcgaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6609" stop="9551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6909" g_stop="7088" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="263" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="319" r_length="56" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9251" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="543" r_length="224" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E342264" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6909" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGA</genome_strand>
        <mrna_strand>GAGCAAAAATGGCGTCGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCACAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGAGTTTGCAAGTACTACACGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAACGACCAGTGGCTGCCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGGTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTCTACTACTACATATCGAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712346" ref_strand="+" ref_description="SGN-E712346 [FB04CD06]">
      <seq>gttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaanctttggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6622" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6922" g_stop="7088" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="250" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9270" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="549" r_length="243" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="559" polyA_stop="592"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E712346" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6922" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA</genome_strand>
        <mrna_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349342" ref_strand="+" ref_description="SGN-E349342 [cTOS-1-C24]">
      <seq>aatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6627" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6927" g_stop="7088" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="245" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="301" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9269" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="543" r_length="242" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E349342" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6927" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAA</genome_strand>
        <mrna_strand>AATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713422" ref_strand="+" ref_description="SGN-E713422 [FB08CD03]">
      <seq>ctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcggtacttcatttctgtttgctacttccttatttcttataattatgtgatattgagacttaatttttgtttttgttcttcttctcttagatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6693" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6993" g_stop="7258" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="322" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9028" g_stop="9278" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="573" r_length="251" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E713422" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6993" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAAC</genome_strand>
        <mrna_strand>CTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200219" ref_strand="-" ref_description="SGN-E200219 [cLEC-12-K11]">
      <seq>ctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctaccccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaagaaagtcttaacaatatatggaaatttctttataattccaaaaaaaaaaaaaaaaaaaaaaactcgagactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6857" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7069" g_stop="7088" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="103" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="159" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9304" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="436" r_length="277" r_score="0.996"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9305" i_stop="11406" i_length="2102">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11407" g_stop="11442" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="472" r_length="36" r_score="0.722"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E200219" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200219" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7069" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9304"/>
          <exon e_start="11407" e_stop="11442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGTTTACCAATCAGTACATTCCAATATCACAGGGTGAAATATAAAAGCCACAAGAAACAGGCCCAGAAACACCAAAAAAAAAAAATCTACTATGACATTTTTGCTACAGAAAGAATCAAGCAGTGTGCCTCTTCTTCTTCTTTGTCTTCAACCTATCACATAAGAAAGTTTTCTCTAATTGATCCACTCTCTGTGCCAGCGAATTCAGCATTCGTGTTTGTAGTTCATTTTTGTGGCACAGTTCAGTCATCATTCTCATCATATTCTCATTCTTCTCCACCATTTTCTCCAACAACTCTCGGTTTCTTCTACTCTCTTCTCCCCCTTCAAACTTGTGTGACCTTGTTTCATTCTCATTCTCATTCTCATTCACATCCTCAACTACTTCGATCAAATCCCCAACTTCACCTCTCTCCACACTTTCCTCCACACATTCGAGCATTGGACAGTCCGTTTCCTGCTTCACCTCCTGCAATCCTCCACGCTTCTCATTCAGCGGTGCTACATCGTGTTCACCCTCTATGGGTGTTTTCTCATCATTTGATGCTGCTTGAGTTTCTACATCCACACTCTGCTCTGACAGATGACAAAGTTCATTCTGATTTGTCAATTTTCCATCTTCATCCTGTTTTCCTGTTGAATTGGGGATGTCTCCGGTCTGATTGACTGGTTCAGAGAGTTCATCGGATTGATTCTCCTCTTCAGCTGCAATTTGATTTGCAGCAGCAACAATGCAGTCGACTTTCTCTTGCAAATAGATGGCCTTTCTAATCACAGCCTTTCTGCACTCCCTAACACCGGAATCAACTCCACGAATGGAGTCCAACTTGAAAAGCAGAGACATCAGCGTCTCATTCACCCGCAACCTTTCCCTTTCATCTCTACAAATCAACTCCGCCGTTTCTCTACACAAAAGCTTCCGCTCAACATCTTCCACCTCTTTTCGTATCAACTTGATTTTCTTCACGCTTTTTCTCACCAAAAAGCCTCTGAATACCTTCTGGATCTTCAACGCTGAACCGGACCTATCCGGCTCAGGTTTCTTTGTCGCCGAGGCCAAAACGGACCGCTCGGGATCCGAACTAACGAAATGGACCGGAATCTGAACAACCTTGGAGGCCTGCTTGATTCCGGCAGGTTTCTGGTGAATCGATTGCACTGGAATTCCTCTCATGTTTGAGGAATAGCCAGGGCGAGCTGACTGGGGCCAATAGCTTCCGTATAATGGATACTCCATTGTTAACTTTGATCGCTTTGTTGAGATATATATTGATCGCTAATGAAGTCTGAAGTTTTTGTTGTATATGCAATGAGAGAAGCTGTGAAGCTTTCTGGTATTTATGCGGTTGAGAAAGAAACTCAACTGAATTTTCCAGAAGGTTCAGGAATTTTTGGAAGGGCACAAAAATATCTTAGCTTTCGCTAGAGTGATGTAGAATGTTCTATCTCTCTATAATTCAATTAAAACATGTCTTTAACCAATTAATTAAATATAGAAAAATTTTAAAAATATTTTCCTTTCGTATCAAATACGCTCTTAATTAAAAAAATAATAATATTGAAACTCAATCACTTATTTTGCATTTTTTATGTTGAGTTCTATTTTTCAAACATATTATATTGGATCCTTATATACGAGAGCGGTGTGCATTATTTTGATTAAATTGAATTTTAATTTGGATTGAATTTTTGAATTCTTGAATTTATTTTGCATTTATAATTTACTTTGTTTGATTTTTTGATTTGGTCTCGATTTTTAGAAAAATAAAAATCGAAAAATTTAAAAAATCGAATTATATTATATAAATTATATATATACTGTACATATTAAATTGAAGTTAATCAATTTTGTCCCTTTTTAGTTATTTTTATTATAATTTAGTTTATTTTCTTATATTTGATCATCTATAATTGATATACTTTTAAGTATTGTGATTTACGTTTTACTTGTGATTTATATTTAAAAGTATATTTAAGAAAGTCAATTTATATATATATATATATATATATATATATAAATTTAAATTGTAAATAATTGTTATATTTCTTATTGACATAACCAATTAACCAAATCGAAAAAACTCAAACAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATT</genome_strand>
        <mrna_strand>CTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACCCCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E608199" ref_strand="+" ref_description="SGN-E608199 [24180]">
      <seq>aatgtgatcctctgtctggcagcatgcccttctctacctggtgtatctatcgtgtttgcaagtactacaaggagattcagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctgtgcaccaatcatattattcaaggctacttgtagctgaagtaacatttagaccatgcaatgtaacataatatcagtcttgtgtttgctttacaagccatcgctatgaatctatgactactacatattcaaaggagtttgcaaaagggaagaaagtctgacaatatggaaatttctctaatattcagtattcactttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="8727" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8885" g_stop="8922" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.789"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="0.79"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9028" g_stop="9304" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="313" r_length="273" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9305" i_stop="12223" i_length="2919">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.089" a_score="0.77"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12224" g_stop="12267" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="357" r_length="44" r_score="0.773"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E608199" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8885" e_stop="8922"/>
          <exon e_start="9028" e_stop="9304"/>
          <exon e_start="12224" e_stop="12267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGATCCTATGTTTAGCGGCATG-CCTTCTCTA-CTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGTTTACCAATCAGTACATTCCAATATCACAGGGTGAAATATAAAAGCCACAAGAAACAGGCCCAGAAACACCAAAAAAAAAAAATCTACTATGACATTTTTGCTACAGAAAGAATCAAGCAGTGTGCCTCTTCTTCTTCTTTGTCTTCAACCTATCACATAAGAAAGTTTTCTCTAATTGATCCACTCTCTGTGCCAGCGAATTCAGCATTCGTGTTTGTAGTTCATTTTTGTGGCACAGTTCAGTCATCATTCTCATCATATTCTCATTCTTCTCCACCATTTTCTCCAACAACTCTCGGTTTCTTCTACTCTCTTCTCCCCCTTCAAACTTGTGTGACCTTGTTTCATTCTCATTCTCATTCTCATTCACATCCTCAACTACTTCGATCAAATCCCCAACTTCACCTCTCTCCACACTTTCCTCCACACATTCGAGCATTGGACAGTCCGTTTCCTGCTTCACCTCCTGCAATCCTCCACGCTTCTCATTCAGCGGTGCTACATCGTGTTCACCCTCTATGGGTGTTTTCTCATCATTTGATGCTGCTTGAGTTTCTACATCCACACTCTGCTCTGACAGATGACAAAGTTCATTCTGATTTGTCAATTTTCCATCTTCATCCTGTTTTCCTGTTGAATTGGGGATGTCTCCGGTCTGATTGACTGGTTCAGAGAGTTCATCGGATTGATTCTCCTCTTCAGCTGCAATTTGATTTGCAGCAGCAACAATGCAGTCGACTTTCTCTTGCAAATAGATGGCCTTTCTAATCACAGCCTTTCTGCACTCCCTAACACCGGAATCAACTCCACGAATGGAGTCCAACTTGAAAAGCAGAGACATCAGCGTCTCATTCACCCGCAACCTTTCCCTTTCATCTCTACAAATCAACTCCGCCGTTTCTCTACACAAAAGCTTCCGCTCAACATCTTCCACCTCTTTTCGTATCAACTTGATTTTCTTCACGCTTTTTCTCACCAAAAAGCCTCTGAATACCTTCTGGATCTTCAACGCTGAACCGGACCTATCCGGCTCAGGTTTCTTTGTCGCCGAGGCCAAAACGGACCGCTCGGGATCCGAACTAACGAAATGGACCGGAATCTGAACAACCTTGGAGGCCTGCTTGATTCCGGCAGGTTTCTGGTGAATCGATTGCACTGGAATTCCTCTCATGTTTGAGGAATAGCCAGGGCGAGCTGACTGGGGCCAATAGCTTCCGTATAATGGATACTCCATTGTTAACTTTGATCGCTTTGTTGAGATATATATTGATCGCTAATGAAGTCTGAAGTTTTTGTTGTATATGCAATGAGAGAAGCTGTGAAGCTTTCTGGTATTTATGCGGTTGAGAAAGAAACTCAACTGAATTTTCCAGAAGGTTCAGGAATTTTTGGAAGGGCACAAAAATATCTTAGCTTTCGCTAGAGTGATGTAGAATGTTCTATCTCTCTATAATTCAATTAAAACATGTCTTTAACCAATTAATTAAATATAGAAAAATTTTAAAAATATTTTCCTTTCGTATCAAATACGCTCTTAATTAAAAAAATAATAATATTGAAACTCAATCACTTATTTTGCATTTTTTATGTTGAGTTCTATTTTTCAAACATATTATATTGGATCCTTATATACGAGAGCGGTGTGCATTATTTTGATTAAATTGAATTTTAATTTGGATTGAATTTTTGAATTCTTGAATTTATTTTGCATTTATAATTTACTTTGTTTGATTTTTTGATTTGGTCTCGATTTTTAGAAAAATAAAAATCGAAAAATTTAAAAAATCGAATTATATTATATAAATTATATATATACTGTACATATTAAATTGAAGTTAATCAATTTTGTCCCTTTTTAGTTATTTTTATTATAATTTAGTTTATTTTCTTATATTTGATCATCTATAATTGATATACTTTTAAGTATTGTGATTTACGTTTTACTTGTGATTTATATTTAAAAGTATATTTAAGAAAGTCAATTTATATATATATATATATATATATATATATAAATTTAAATTGTAAATAATTGTTATATTTCTTATTGACATAACCAATTAACCAAATCGAAAAAACTCAAACAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATTTGATTTGGATTGGGTTACACTTCTTCAAAAATAAAAATCAAAAGTTTAAATCGAATAATATAAAATGAACCAAAAAATCGAATGTACACCCTTAAATATGACTAACGAAAAAAAAATCTTAGATTATTGACGATCACTCAGAGGTAAAATAATGTATTAAAACAATCAATCCAATCAATTAAATAAATTTAGTTTCTTAAATATTAAATGTGTATTACGGAAATTATTGTCCAGTCACATTTTTGGCATAGTTGACTGCAGATTATATTTATGGCTTCAATTTTCTTAAGTTATTAACTTCTTCGCATGTTAATAAAAACAATTATAATTTATATATAAATATAAACATGCATTTATTAATTTTACTATTTCAAATTTAATTGTAACGTAATGTACCTCTAATTAATTCGATCAAACATAAAGTTTTCATTTAATTCATATCTAATTACCTTCAAATTCATATATCTTACCATATCGTTTTATTAGGATTTATATTCAATTTTTTAAAGAGAGAATTTTTACAGTCGAGTTAAAATAGTTTTTTCATTATTACAAATAAAAATATCAATATTCATCTTTTCTTGATTCGATTTATCTCAATCTATTCTTATCGTACCTCTAAATTCGGCCAAAACATAAGGTTTTCAAGAATATTTCATTCTATTCCATTGCTTATACCTATTCTCGAGCTTTCCCACTCATACTCCCACTTCGATTCCCATTTTCTTCCTATAAATACTTCATTCATTAAATTTATATTCGTCAAATTACATTTACTTAGTATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AATGTGATCCTCTGTCTGGCAGCATGCCCTTCTCTACCTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATTCAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTGTGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATTTAGACCATGCAATG-TAACATAATATCAGTCTTGTGTTTGCTTTACAAGCCATCGCTATGAATCTATGACTACTACATATTCAAAGGAGTTTGCAAAAGGGAAGAAAGTC-TGAC-A-ATATGGAAATTTCTCTAATATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTCACTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E226260" ref_strand="+" ref_description="SGN-E226260 [cLEL-31-M13](-)">
      <seq>ggcacactgcttgattctttctgtagcaaaaatgtcatagtagattttttttttttggtgtttctgggcctgtatcttgtggcttttatatttcaccctgtgatactggaatgtactgattggtaaacaaagattttggaaagtgaattataaagaaatttccatatattgttaagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="9748" stop="8972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9448" g_stop="9272" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="178" polyA_stop="196"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E226260" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E226260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9448" e_stop="9272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</genome_strand>
        <mrna_strand>GGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTATCTTGTGGCTTTTATATTTCACCCTGTGATACTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371331" ref_strand="+" ref_description="SGN-E371331 [TUS-27-C5](-)">
      <seq>caggatgaagatggaaaattgccaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggaaaaaggtgaagttggggatttgatcaaagtagttgaggatgtgaattagaatgagaatgagaattaaacaaggtcacacaagtttgaagggggagaaaagagtaaaagaaaccgagagttgttggagaaaatggtggaaaagaattagaatatgatgagaatgatgtctgaactgtgccacaaaaatgaactacaaacacgaatgctgaattcgctggcccagagagtggatcaattaaagaaaacttttttatgtgataggttgaagacaaagaagaagaaaaggcacactgcttgattctttctgtagcaaaaatgtcatagtagattttttttttggtgtttctgggcctgttttttgtggcttttatatttcaccctgtgatattggaatgtactgattggtaaacaaagattttggaaagtgaattataaagaaattttctatatattgttaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10247" stop="8972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9947" g_stop="9274" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="673" r_length="673" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="674" polyA_stop="696"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E371331" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9947" e_stop="9274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAA-TTTCCATATATTGTTAA</genome_strand>
        <mrna_strand>CAGGATGAAGATGGAAAATTGCCAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAAAAAGGTGAAGTTGGGGATTTGATCAAAGTAGTTGAGGATGTGAATTAGAATGAGAATGAGAATTAAACAAGGTCACACAAGTTTGAAGGGGGAGAAAAGAGTAAAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAAAAGAATTAGAATATGATGAGAATGATGTCTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCCCAGAGAGTGGATCAATTAAAGAAAACTTTTTTATGTGATAGGTTGAAGACAAAGAAGAAGAAAAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGA--TTTTTTTTTTGGTGTTTCTGGGCCTGTTTTTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTTCTATATATTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477763" ref_strand="+" ref_description="SGN-E477763 [cSTD-1-N21]">
      <seq>agacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtaattagaaaggccatctatttgcaagagaaagttgactccattgtttctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaatcagccaatcagaccggagacatccccaattcaacaggaaatcaggatgaagatggaaaattgaataatcagaatgaactttgtgatctgtcagagcagagtgtggatgtagaaactcaagcgacatcaaatgatgagaaaacacccgtagagggtgaacacgatgtagcaccgtcggttgagaagtgtgaagaattgcaggaggtgaaggaggaaacggactgtccaaagcacgaacgtgtggaggaaagtgtggagagaggtgaagttggggatgtgattgaaggaattgaggatgagaagaatgaaacaaggtcacacaagcttgacggggaagaggagagtagaagaacagagagttgttggagaaaatggtggagaagaatgagaatatgatgagaatgatgactgaactgtgccaaaaaaatgaactacaaacacgaatgctgaattcgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10471" stop="9216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10171" g_stop="9516" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="640" r_length="640" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E477763" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10171" e_stop="9516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTG</genome_strand>
        <mrna_strand>AGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTAATTAGAAAGGCCATCTATTTGCAAGAGAAAGTTGACTCCATTGTTTCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAATCAGCCAATCAGACCGGAGACATCCCCAATTCAACAGGAAATCAGGATGAAGATGGAAAATTGAATAATCAGAATGAACTTTGTGATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCGACATCAAATGATGAGAAAACACCCGTAGAGGGTGAACACGATGTAGCACCGTCGGTTGAGAAGTGTGAAGAATTGCAGGAGGTGAAGGAGGAAACGGACTGTCCAAAGCACGAACGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATGTGATTG-A--AG--GA--AT-TG-A-G-G-ATGAG-A--AGAATGAAACAAGGTCACACAAGCTTGACGGGGAAGAGGAGAGTAGAAG-AACAGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCAAAAAAATGAACTACAAACACGAATGCTGAATTCGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211366" ref_strand="+" ref_description="SGN-E211366 [cLEC-67-A13]">
      <seq>tggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggagagaggtgaagttggggatttgatcgaagtagttgaggatgtgaatgagaatgagaatgagaatgaaacaaggtcacacaagtttgaagggggagaagagagtagaagaaaccgagagttgttggagaaaatggtggagaagaatgagaatatgatgagaatgatgactgaactgtgccacaaaaatgaactacnaacacgaatgctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10444" stop="9222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10144" g_stop="9522" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E211366" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10144" e_stop="9522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAAT</genome_strand>
        <mrna_strand>TGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACNAACACGAATGCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273408" ref_strand="+" ref_description="SGN-E273408 [cLEN-3-P22]">
      <seq>gacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcataaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcataccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcacaatgaactttgtcatctgtcagagcatagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtgtatgattgcaggaggtgaagcaggaaacggactgtccaatgctctaatgtgtggaggaaagtgtggagagaggtgaagttggggatttgatcgaagtatattttgaggatgtgaatgagaatgataatgagaatgaaacaaggtcacacaagtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10470" stop="9347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10170" g_stop="9647" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E273408" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10170" e_stop="9647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAG--TA-GTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTG</genome_strand>
        <mrna_strand>GACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCATAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCATACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCACAATGAACTTTGTCATCTGTCAGAGCATAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGTATGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCTAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTATATTTTGAGGATGTGAATGAGAATGATAATGAGAATGAAACAAGGTCACACAAGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371332" ref_strand="+" ref_description="SGN-E371332 [TUS-27-C5]">
      <seq>tggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggagaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10678" stop="9429"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10378" g_stop="9729" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E371332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E371332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10378" e_stop="9729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGA</genome_strand>
        <mrna_strand>TGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268985" ref_strand="+" ref_description="SGN-E268985 [cLEI-16-C8]">
      <seq>gttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaagtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10679" stop="9524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10380" g_stop="9824" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E268985" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10380" e_stop="9824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATG</genome_strand>
        <mrna_strand>GTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAAGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E479916" ref_strand="+" ref_description="SGN-E479916 [cSTD-11-H24]">
      <seq>tgcccggaattcaagcccggcctccaagggttgtccagattccggtccacttcgtcagttcggaatcccgagccggtccgttttggcctcggcgaaaccagaaacctgagggcggatcggtccgcttcagcgttgaagatccagaagggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcatgtcgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtaattagaaaggccatctatttgcaagagaaagttgactccattgtttctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaatcagccaatcagaccggagacatccccaattcaacaggaaatcangatgaagatggaaaattgaataatcagaatgaactnntgtgatctgtcagagcagagtgttggatgtagaaactcaagcgacatcaaatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10755" stop="9554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10455" g_stop="9854" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="613" r_length="613" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E479916" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10455" e_stop="9854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TG-CCGGAAT-CAAG-CAGGCCTCCAA-GGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGG-ATCCCGAG-CGGTCCGTTTTGGCCTCGGCGACA-AAGAAACCTGA-GCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAA-GGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACT-TTGTCATCTGTCAGAGCAGAGTG-TGGATGTAGAAACTCAAGCAGCATCAAATGATG</genome_strand>
        <mrna_strand>TGCCCGGAATTCAAGCCCGGCCTCCAAGGGTTGTCCAGATTCCGGTCCACTTCGTCAGTTCGGAATCCCGAGCCGGTCCGTTTTGGCCTCGGCGAAACCAGAAACCTGAGGGCGGATCGGTCCGCTTCAGCGTTGAAGATCCAGAAGGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCATGTCGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTAATTAGAAAGGCCATCTATTTGCAAGAGAAAGTTGACTCCATTGTTTCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAATCAGCCAATCAGACCGGAGACATCCCCAATTCAACAGGAAATCANGATGAAGATGGAAAATTGAATAATCAGAATGAACTNNTGTGATCTGTCAGAGCAGAGTGTTGGATGTAGAAACTCAAGCGACATCAAATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428431" ref_strand="+" ref_description="SGN-E428431 [STM-50-E18]">
      <seq>caaaaacttcagacttcgttagctatcaatatctcatcaaagcgatcaaagttaacaatggagaatccattctacggaagctattggtcccagccagctcaccctcgctattcctcaaacatgagaggaataccagtgcaatcgattcaccagaaacctgccggaatcaagccggcctccaaggttgtccagattccggtccacttcgtcagttcggatcccgagcggtccgttttggcctcggcgaaacagaaacctgaggcggatcggtccgcttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcatgtcgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtaattagaaaggccatctatttgcaagagaaagttgactccattgtttctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaatcagccaatcagaccggagacatccccaattncacaggaaatcaggatgaagatggaaaattgaatatcagaatgaactttgtgatctgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10899" stop="9598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10617" g_stop="9898" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="715" r_length="715" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E428431" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10617" e_stop="9898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTCAGACTTCATTAGCGATCAATATATATCTCAACAAAGCGATCAAAGTTAACAATGGAGTATCCATTATACGGAAGCTATTGGCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTC</genome_strand>
        <mrna_strand>CAAAAACTTCAGACTTCGTTAGCTATC---A-ATATCTCATCAAAGCGATCAAAGTTAACAATGGAGAATCCATTCTACGGAAGCTATTGGTCCCAGCCAGCTCACCCTCGCTATTCCTCAAACATGAGAGGAATACCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCCGGCCTCCAAGGTTGTCCAGATTCCGGTCCACTTCGTCAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGAAACAGAAACCTGAGGCGGATCGGTCCGCTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCATGTCGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTAATTAGAAAGGCCATCTATTTGCAAGAGAAAGTTGACTCCATTGTTTCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAATCAGCCAATCAGACCGGAGACATCCCCAATTNCACAGGAAATCAGGATGAAGATGGAAAATTGA-ATATCAGAATGAACTTTGTGATCTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257520" ref_strand="+" ref_description="SGN-E257520 [cLEG-45-I5]">
      <seq>cccagtcagctcgccctggctattcctcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacnaatcagaatgaactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10825" stop="9607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10525" g_stop="9907" g_length="619"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="619" r_length="619" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E257520" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10525" e_stop="9907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTG</genome_strand>
        <mrna_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACNAATCAGAATGAACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E254739" ref_strand="+" ref_description="SGN-E254739 [cLEG-33-C1]">
      <seq>gccccagtcagctcgccctggctattcctcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtatagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10827" stop="9668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10527" g_stop="9968" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E254739" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10527" e_stop="9968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACA</genome_strand>
        <mrna_strand>GCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTATAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619166" ref_strand="+" ref_description="SGN-E619166 [69852]">
      <seq>caaaaacttcagacttcgttagctatcaatatctcatcaaagcgatcaaagttaacaatggagaatccattctacggaagctattggtcccagccagctcaccctctctattcctcaaacatgagaggaataccagtgcaatcgattcaccagaaacctgccggaatcaagccggcctccaaggttgtccagattccggtccacttcgtcagttcggatcccgagcggtccgttttggcctcggcgaaacagaaacctgaggcggatcggtccgcttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcatgtcgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcggatgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgtaagggagtgcagaaaggctgtaattagaaaggccatctatttgcaagagaaagttgactccattgtttccgctgcaaatcaaattgcagctgaagaggagaatcaatatacctgattacgatgagctctctgaaccaggcaatcagaccgtaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10899" stop="9707"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10617" g_stop="10009" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E619166" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619166" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10617" e_stop="10009"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTTCAGACTTCATTAGCGATCAATATATATCTCAACAAAGCGATCAAAGTTAACAATGGAGTATCCATTATACGGAAGCTATTGGCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCA</genome_strand>
        <mrna_strand>CAAAAACTTCAGACTTCGTTAGCTATC---A-ATATCTCATCAAAGCGATCAAAGTTAACAATGGAGAATCCATTCTACGGAAGCTATTGGTCCCAGCCAGCTCACCCTCTCTATTCCTCAAACATGAGAGGAATACCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCCGGCCTCCAAGGTTGTCCAGATTCCGGTCCACTTCGTCAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGAAACAGAAACCTGAGGCGGATCGGTCCGCTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCATGTCGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGATGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTAAGGGAGTGCAGAAAGGCTGTAATTAGAAAGGCCATCTATTTGCAAGAGAAAGTTGACTCCATTGTTTCCGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251923" ref_strand="+" ref_description="SGN-E251923 [cLEG-14-M7]">
      <seq>tcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10799" stop="9806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10499" g_stop="10106" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E251923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10499" e_stop="10106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGT</genome_strand>
        <mrna_strand>TCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359846" ref_strand="+" ref_description="SGN-E359846 [cLPP-9-I22]">
      <seq>tattcaaataccaaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcaggaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcangacatcacggtgacactcagaacttgtgggatcgttttcttcctattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11926" stop="13708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12226" g_stop="12537" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="470" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="578" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13282" i_length="290">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13283" g_stop="13408" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="704" r_length="126" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E359846" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359846" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12226" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13283" e_stop="13408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAA-AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGT-GGATCGTTTTCTTCCTATTCTT</genome_strand>
        <mrna_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG..................................................................................................................................................................................................................................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCANGACATCACGGTGACACTCAGA-ACTTGTGGGATCGTTTTCTTCCTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365045" ref_strand="+" ref_description="SGN-E365045 [cLPP-17-J20]">
      <seq>caaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11937" stop="13060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12237" g_stop="12537" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12760" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="441" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365045" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365045" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12237" e_stop="12537"/>
          <exon e_start="12622" e_stop="12760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAGAAAAAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTAC</genome_strand>
        <mrna_strand>CAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360018" ref_strand="+" ref_description="SGN-E360018 [cLPP-9-B4]">
      <seq>aaaaagagaaaaaatatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaagagtaaatgatacaaattttgtagaatcatttactaacatataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11938" stop="13045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12238" g_stop="12537" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12745" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="425" r_length="124" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360018" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>424</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12238" e_stop="12537"/>
          <exon e_start="12622" e_stop="12745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGAGAAAAAAAATCAA-AAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACA</genome_strand>
        <mrna_strand>AAAAAGAGAAAAAATATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAAGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359594" ref_strand="+" ref_description="SGN-E359594 [cLPP-5-I24]">
      <seq>agaaaaaaaatcacaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtaaccattgattttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaattactcggttattggtgactggggacgaacgggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagttaatgatacaaattttgtaaaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11942" stop="13076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12242" g_stop="12537" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12776" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="451" r_length="155" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E359594" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12242" e_stop="12537"/>
          <exon e_start="12622" e_stop="12776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAG</genome_strand>
        <mrna_strand>AGAAAAAAAATCACAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAACCATTGATTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTACTCGGTTATTGGTGACTGGGGACGAACGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTTAATGATACAAATTTTGTAAAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362801" ref_strand="+" ref_description="SGN-E362801 [cLPP-2-E14]">
      <seq>aaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11948" stop="13478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12248" g_stop="12537" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="448" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="556" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13178" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="669" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362801" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12248" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAA-AAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</genome_strand>
        <mrna_strand>AAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361934" ref_strand="+" ref_description="SGN-E361934 [cLPP-11-K1]">
      <seq>aaaatcaaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11950" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12248" g_stop="12537" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="447" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361934" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12248" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAAATCAAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361634" ref_strand="+" ref_description="SGN-E361634 [cLPP-12-M17]">
      <seq>aaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11948" stop="13065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12248" g_stop="12537" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12765" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="435" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361634" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12248" e_stop="12537"/>
          <exon e_start="12622" e_stop="12765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAATCAAAAAAAAA-AAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</genome_strand>
        <mrna_strand>AAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362828" ref_strand="+" ref_description="SGN-E362828 [cLPP-2-B13]">
      <seq>aaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11949" stop="13383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12249" g_stop="12537" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="447" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="555" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13083" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="573" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362828" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12249" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCA</genome_strand>
        <mrna_strand>AAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364158" ref_strand="+" ref_description="SGN-E364158 [cLPP-16-D15]">
      <seq>aaaaatcaaaaaaaaaaaaaggaggttgggactgaagtataacaattggtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggatattggtgactggggacgaaggggtacttataatcaatctcacgtacctcgccacatggaaagagtcggagagaacttagacattgattttgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11949" stop="12961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12249" g_stop="12537" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12661" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="330" r_length="40" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364158" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12249" e_stop="12537"/>
          <exon e_start="12622" e_stop="12661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTAT</genome_strand>
        <mrna_strand>AAAAATCAAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTGGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGATATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTACCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAACTTAGACATTGATTTTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330137" ref_strand="+" ref_description="SGN-E330137 [cTOD-5-J5]">
      <seq>aaaatcaaaaaaaaaaaggaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaagtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11950" stop="13423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12250" g_stop="12537" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="444" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="552" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13123" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="553" r_stop="610" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E330137" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330137" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12250" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</genome_strand>
        <mrna_strand>AAAATC-AAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330138" ref_strand="+" ref_description="SGN-E330138 [cTOD-5-J7]">
      <seq>aaaatcaaaaaaaaaaagtatgttggttctgaagtataacaatttgtgcggctttgggaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggacagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatgggacagcgtattaagcaaccacgattacagaggaaacgtataagcacaactcagtccttaccttaagaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11950" stop="13249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12250" g_stop="12537" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="444" r_length="157" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12949" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="509" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E330138" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12250" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATT</genome_strand>
        <mrna_strand>AAAATC-AAAAAAAAAAAGTATGTTGGTTCTGAAGTATAACAATTTGTGCGGCTTTGGGAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGACAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGGACAGCG..........................................................................................................TATTAAGCAACCACGATTACAGAGGAAACGTATAAGCACAACTCAGTCCTTACCTTAAGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363515" ref_strand="+" ref_description="SGN-E363515 [cLPP-4-P21]">
      <seq>aaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11951" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12251" g_stop="12537" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="445" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363515" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12251" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364476" ref_strand="+" ref_description="SGN-E364476 [cLPP-18-A2]">
      <seq>aaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11951" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12251" g_stop="12537" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="445" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364476" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12251" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363465" ref_strand="+" ref_description="SGN-E363465 [cLPP-4-B3]">
      <seq>tcaaaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11956" stop="13043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12251" g_stop="12537" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12743" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="409" r_length="122" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363465" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12251" e_stop="12537"/>
          <exon e_start="12622" e_stop="12743"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATA</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361478" ref_strand="+" ref_description="SGN-E361478 [cLPP-6-C17]">
      <seq>aatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttcaaaaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11952" stop="13070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12252" g_stop="12537" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="287" r_length="287" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12770" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="435" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361478" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12252" e_stop="12537"/>
          <exon e_start="12622" e_stop="12770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATG</genome_strand>
        <mrna_strand>AATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTT-CAAAAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364439" ref_strand="+" ref_description="SGN-E364439 [cLPP-20-L12]">
      <seq>tcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactacgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttacacattgattctgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggttcatcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11954" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12254" g_stop="12537" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="442" r_length="157" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364439" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12254" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTACGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTACACATTGATTCTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTTCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364406" ref_strand="+" ref_description="SGN-E364406 [cLPP-20-K22]">
      <seq>tcaaaaaaaaaaaaaagaggttgggactgacgtgttgccattggagctggtctctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgttttatcaacggggtgacaattttttatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctttacaaaaacaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11954" stop="13070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12254" g_stop="12537" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12770" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="437" r_length="152" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364406" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12254" e_stop="12537"/>
          <exon e_start="12622" e_stop="12770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAAC-GGGTGACAA-TTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGC-TTACAAAAACAATG</genome_strand>
        <mrna_strand>TCAAAAAAAAAAAAAAGAGGTTGGGACTGACGTGTTGCCATTGGAGCTGGTCTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTTTTATCAACGGGGTGACAATTTTTTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTTACAAAAACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360212" ref_strand="+" ref_description="SGN-E360212 [cLPP-14-C12]">
      <seq>tcaaaataaaaaaaaagatgttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgttgctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtgaatgatacaaattttgtagaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11954" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12254" g_stop="12537" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="285" r_length="285" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12746" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="410" r_length="125" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360212" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360212" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12254" e_stop="12537"/>
          <exon e_start="12622" e_stop="12746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAA-AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>TCAAAATAAAAAAAAAGATGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTTGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTGAATGATACAAATTTTGTAGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360191" ref_strand="+" ref_description="SGN-E360191 [cLPP-14-I23]">
      <seq>aaaaaaaaaaaaataggttgggactgaagtataacaatttgagctatctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11956" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12256" g_stop="12537" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="283" r_length="283" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12746" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="408" r_length="125" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360191" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12256" e_stop="12537"/>
          <exon e_start="12622" e_stop="12746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCT-TCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>AAAAAAAAAAAAATAGGTTGGGACTGAAGTATAACAATTTGAGCTATCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361342" ref_strand="+" ref_description="SGN-E361342 [cLPP-6-G1]">
      <seq>aaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11960" stop="13069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12260" g_stop="12537" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12769" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="426" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361342" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361342" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12260" e_stop="12537"/>
          <exon e_start="12622" e_stop="12769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>AAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360331" ref_strand="+" ref_description="SGN-E360331 [cLPP-8-A18]">
      <seq>aaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacgcattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttangaaaattgatagcagatggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11963" stop="13266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12263" g_stop="12537" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="432" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12966" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="514" r_length="82" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360331" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12263" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTG</genome_strand>
        <mrna_strand>AAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGCATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGCAGATGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329445" ref_strand="+" ref_description="SGN-E329445 [cTOD-11-A2]">
      <seq>aaaaggaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11964" stop="13220"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12264" g_stop="12537" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="431" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12920" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="467" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E329445" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12264" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAG</genome_strand>
        <mrna_strand>AAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332363" ref_strand="+" ref_description="SGN-E332363 [cTOD-17-A7]">
      <seq>acgaggctgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11976" stop="13072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12273" g_stop="12537" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12772" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="416" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E332363" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332363" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12273" e_stop="12537"/>
          <exon e_start="12622" e_stop="12772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGT</genome_strand>
        <mrna_strand>ACGAGGCTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363010" ref_strand="+" ref_description="SGN-E363010 [cLPP-2-D9]">
      <seq>gggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11975" stop="13477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12275" g_stop="12537" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="420" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13177" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="640" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363010" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12275" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360268" ref_strand="+" ref_description="SGN-E360268 [cLPP-14-N2]">
      <seq>gggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11975" stop="13428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12275" g_stop="12537" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="420" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13128" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="591" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360268" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12275" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTA</genome_strand>
        <mrna_strand>GGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547725" ref_strand="+" ref_description="SGN-E547725 [TUS-71-M2]">
      <seq>ctgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11979" stop="13822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12279" g_stop="12537" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="416" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="524" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="652" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="781" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13489" g_stop="13522" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="782" r_stop="815" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E547725" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12279" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATG</genome_strand>
        <mrna_strand>CTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363035" ref_strand="+" ref_description="SGN-E363035 [cLPP-2-L9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccctgagtgaatcgacagcgaaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="651" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13322" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="652" r_stop="691" r_length="40" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363035" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCCTGAGTGAATCGACAGCGAAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359841" ref_strand="+" ref_description="SGN-E359841 [cLPP-9-G24]">
      <seq>tgaagtataaccatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacatttggcgttggtgtgctccctagacatgcatacatggnctagcgtagtaaaagaactcgaaaagcccttgagtgaatcgacagcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="653" r_length="130" r_score="0.945"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13317" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="688" r_length="35" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E359841" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG-TGGTGTGCTCCCTAGACATGCATACATGG-CTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAAC</genome_strand>
        <mrna_strand>TGAAGTATAACCATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACATTTGGCGTTGGTGTGCTCCCTAGACATGCATACATGGNCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGCCCTTGAGTGAATCGACAGCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363022" ref_strand="+" ref_description="SGN-E363022 [cLPP-2-H9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13187" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="645" r_length="122" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363022" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364931" ref_strand="+" ref_description="SGN-E364931 [cLPP-17-K3]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13486"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13186" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="644" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364931" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364931" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329263" ref_strand="+" ref_description="SGN-E329263 [cTOD-2-F8]">
      <seq>tgaagtattacaatttgtgcttctttctcaatttccttggttgtcgaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaagcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaactcctaaagatcacatctacgattggcgtggtgtgcttcctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13177" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="635" r_length="112" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E329263" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>TGAAGTATTACAATTTGTGCTTCTTTCTCAATTTCCTTGGTTGTCGAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAAGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAAGATCACATCTACGATTGGCGTGGTGTGCTTCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362325" ref_strand="+" ref_description="SGN-E362325 [cLPP-10-L18]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13176" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362325" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362325" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331885" ref_strand="+" ref_description="SGN-E331885 [cTOD-7-J10]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacaactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13176" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="634" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E331885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361127" ref_strand="+" ref_description="SGN-E361127 [cLPP-13-F1]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaagatcacatctacgattggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13151" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="609" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361127" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAAGATCACATCTACGATTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360410" ref_strand="+" ref_description="SGN-E360410 [cLPP-8-L22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13141" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360410" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361154" ref_strand="+" ref_description="SGN-E361154 [cLPP-13-N9]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13141" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361154" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365084" ref_strand="+" ref_description="SGN-E365084 [cLPP-17-I13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13141" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="599" r_length="76" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365084" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364478" ref_strand="+" ref_description="SGN-E364478 [cLPP-18-A20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaagagaaatatttcactactcctaaggatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13136" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="594" r_length="71" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364478" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAAGAGAAATATTTCACTACTCCTAAGGATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360196" ref_strand="+" ref_description="SGN-E360196 [cLPP-14-K21]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccactattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaagtctttcgtagttaatgcagaaattgctgaaatattcatgggggatacaactccatttgaggagaaatatttcactactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.954"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13126" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="584" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360196" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACTATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGGGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362578" ref_strand="+" ref_description="SGN-E362578 [cLPP-1-B13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13123" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="581" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362578" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362578" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360424" ref_strand="+" ref_description="SGN-E360424 [cLPP-8-A13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="523" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13084" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="542" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360424" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364332" ref_strand="+" ref_description="SGN-E364332 [cLPP-20-J20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttangaaaattgatagcagatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12963" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="494" r_length="79" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364332" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGCAGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364345" ref_strand="+" ref_description="SGN-E364345 [cLPP-20-N20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgttgaagcacaactcagtccttaccttangaaaattgatagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12955" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="486" r_length="71" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364345" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12955"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTTGAAGCACAACTCAGTCCTTACCTTANGAAAATTGATAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363237" ref_strand="+" ref_description="SGN-E363237 [cLPP-19-J18]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgattacggattaacaggagtaaatgatacaaattttgtgaaatcatttactaacatatacacagcaaaaagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgttgaagcacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13226"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12926" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="457" r_length="42" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363237" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATTACGGATTAACAGGAGTAAATGATACAAATTTTGTGAAATCATTTACTAACATATACACAGCAAAAAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTTGAAGCACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362249" ref_strand="+" ref_description="SGN-E362249 [cLPP-10-G22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12914" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="445" r_length="30" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362249" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360712" ref_strand="+" ref_description="SGN-E360712 [cLPP-7-N16]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12898" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="429" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360712" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12898"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361404" ref_strand="+" ref_description="SGN-E361404 [cLPP-6-D17]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361404" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361476" ref_strand="+" ref_description="SGN-E361476 [cLPP-6-C13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="415" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361476" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>415</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363432" ref_strand="+" ref_description="SGN-E363432 [cLPP-4-E20]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattntgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12769" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="406" r_length="148" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363432" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTNTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329175" ref_strand="+" ref_description="SGN-E329175 [cTOD-2-F3]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12769" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="406" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E329175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361657" ref_strand="+" ref_description="SGN-E361657 [cLPP-12-G24]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttgctttgttgtcaaatcctaatacagaaccatggctaaattctccaataattccatggttgtgtgctttttggtagccattgtttttggtatctctagtgcaagtgcatctactacgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttgttggctattggtgactggggacgaacgggtacttatcatcaatctcacgtagctcgccacatggaaagagtctgagagaagttagacattgattttgtattatcaacgggtgacaatttctatgattacggattaacaggaataaatgacacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12768" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361657" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTGCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTCTCCAATAATTCCATGGTTGTGTGCTTTTTGGTAGCCATTGTTTTTGGTATCTCTAGTGCAAGTGCATCTACTACGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTGTTGGCTATTGGTGACTGGGGACGAACGGGTACTTATCATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCTGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATTACGGATTAACAGGAATAAATGACACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364192" ref_strand="+" ref_description="SGN-E364192 [cLPP-16-D2]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12760" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="397" r_length="139" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364192" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTAC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364380" ref_strand="+" ref_description="SGN-E364380 [cLPP-20-O13]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12752" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="389" r_length="131" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364380" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365131" ref_strand="+" ref_description="SGN-E365131 [cLPP-17-I22]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13049"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12749" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="386" r_length="128" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365131" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGC</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360604" ref_strand="+" ref_description="SGN-E360604 [cLPP-7-C4]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaagggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13048"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12748" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="385" r_length="127" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360604" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12748"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAG</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAAGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365029" ref_strand="+" ref_description="SGN-E365029 [cLPP-17-F4]">
      <seq>tgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaaatttgtagaatcatttactaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="13041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12741" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="378" r_length="120" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365029" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATA</genome_strand>
        <mrna_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAAATTTGTAGAATCATTTACTAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364133" ref_strand="+" ref_description="SGN-E364133 [cLPP-16-C16]">
      <seq>tgaagtataacagtttgtgtctatttctcaatttccttcgctgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagcttgccacatggaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11980" stop="12844"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12280" g_stop="12537" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12630" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="267" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364133" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12280" e_stop="12537"/>
          <exon e_start="12622" e_stop="12630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGA</genome_strand>
        <mrna_strand>TGAAGTATAACAGTTTGTGTCTATTTCTCAATTTCCTTCGCTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTTGCCAC....................................................................................ATGGAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361291" ref_strand="+" ref_description="SGN-E361291 [cLPP-15-M13]">
      <seq>gaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctaaacattgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11981" stop="13477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12281" g_stop="12537" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="414" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="522" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13177" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="635" r_length="113" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361291" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12281" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACA-TGCATACAT</genome_strand>
        <mrna_strand>GAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAAACATTGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E331907" ref_strand="+" ref_description="SGN-E331907 [cTOD-16-E3]">
      <seq>aagtataacaatttgtgcttctttctcgatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctactgcaagagcatctactatgcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacataactcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtataagcacaactcaatccttaccttaggaaaattgatagcagatggatatgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatgatggatacaactccatttgatgagaaatatttcacaactcctaaggatcacatctacgattggcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11982" stop="13450"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12282" g_stop="12537" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="413" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="521" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13150" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="606" r_length="85" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E331907" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12282" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCGATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTACTGCAAGAGCATCTACTATGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACATAACTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTATAAGCACAACTCAATCCTTACCTTAGGAAAATTGATAGCAGATGGATATGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGATGGATACAACTCCATTTGATGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332019" ref_strand="+" ref_description="SGN-E332019 [cTOD-16-F2]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaaaaattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcaccctactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataatggtttaacaggagtaaatgatacaaatttcgtagagtcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaacgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtcttttgtagttaacgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcacgactcctaaggatcacatctacgattggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11982" stop="13449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12282" g_stop="12537" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="413" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="521" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13149" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="605" r_length="84" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E332019" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332019" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12282" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGC</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACGACTCCTAAGGATCACATCTACGATTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360797" ref_strand="+" ref_description="SGN-E360797 [cLPP-7-B17]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11982" stop="13065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12282" g_stop="12537" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12765" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="400" r_length="144" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360797" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12282" e_stop="12537"/>
          <exon e_start="12622" e_stop="12765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361114" ref_strand="+" ref_description="SGN-E361114 [cLPP-13-O22]">
      <seq>aagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11982" stop="13017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12282" g_stop="12537" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12717" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="352" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361114" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12282" e_stop="12537"/>
          <exon e_start="12622" e_stop="12717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAAT</genome_strand>
        <mrna_strand>AAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361507" ref_strand="+" ref_description="SGN-E361507 [cLPP-6-E2]">
      <seq>agtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11983" stop="13204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12283" g_stop="12537" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="412" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12904" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="432" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361507" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12283" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTAC</genome_strand>
        <mrna_strand>AGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364947" ref_strand="+" ref_description="SGN-E364947 [cLPP-17-O9]">
      <seq>gtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaataccagaaccatggctaaattttccaataattccatggttctgtgcctttttggtagccattgtttttgttatctctagtgcaagtgccatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggaccaaggggtaccttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagaccattgattttgtattatcaacgggtgaccaatttctatgataaccggattaaccaggagtaaatgataccaaattttgtagaatcatttactaacatatacccagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11984" stop="13292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12284" g_stop="12537" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="420" r_length="162" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="528" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13079" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="542" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364947" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12284" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATA-CAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTG-CTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTG-CATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTA-CTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGA-CATTGATTTTGTATTATCAACGGGTGA-CAATTTCTATGATAA-TGGTTTAA-CAGGAGTAAATGATA-CAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATA</genome_strand>
        <mrna_strand>GTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACCAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACCAAGGGGTACCTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACCATTGATTTTGTATTATCAACGGGTGACCAATTTCTATGATAACCGGATTAACCAGGAGTAAATGATACCAAATTTTGTAGAATCATTTACTAACATATACCCAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360058" ref_strand="+" ref_description="SGN-E360058 [cLPP-9-N20]">
      <seq>tataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11985" stop="13059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12285" g_stop="12537" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12759" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="391" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360058" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360058" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12285" e_stop="12537"/>
          <exon e_start="12622" e_stop="12759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTA</genome_strand>
        <mrna_strand>TATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364463" ref_strand="+" ref_description="SGN-E364463 [cLPP-18-E19]">
      <seq>ataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgcttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11986" stop="13059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12286" g_stop="12537" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12759" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="390" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364463" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12286" e_stop="12537"/>
          <exon e_start="12622" e_stop="12759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTA</genome_strand>
        <mrna_strand>ATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGCTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361523" ref_strand="+" ref_description="SGN-E361523 [cLPP-6-I22]">
      <seq>aacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11988" stop="13228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12288" g_stop="12537" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="407" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12928" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="451" r_length="44" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361523" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12288" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12928"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTC</genome_strand>
        <mrna_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363130" ref_strand="+" ref_description="SGN-E363130 [cLPP-19-I16]">
      <seq>aacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactatgcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgttaaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11988" stop="13078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12288" g_stop="12537" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="407" r_length="157" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363130" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12288" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>AACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTATGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTTAAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362875" ref_strand="+" ref_description="SGN-E362875 [cLPP-2-F4]">
      <seq>caatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11990" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12290" g_stop="12537" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="405" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="513" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13176" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="624" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362875" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12290" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362378" ref_strand="+" ref_description="SGN-E362378 [cLPP-10-P15]">
      <seq>caatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagctttcaaaaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11990" stop="13071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12290" g_stop="12537" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12771" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="398" r_length="150" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362378" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362378" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12290" e_stop="12537"/>
          <exon e_start="12622" e_stop="12771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGG</genome_strand>
        <mrna_strand>CAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTTCAAAAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361942" ref_strand="+" ref_description="SGN-E361942 [cLPP-11-M3]">
      <seq>aatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11991" stop="13254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12291" g_stop="12537" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="404" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12954" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="474" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361942" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12291" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</genome_strand>
        <mrna_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360637" ref_strand="+" ref_description="SGN-E360637 [cLPP-7-O8]">
      <seq>aatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11991" stop="13069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12291" g_stop="12537" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12769" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="395" r_length="148" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360637" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12291" e_stop="12537"/>
          <exon e_start="12622" e_stop="12769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</genome_strand>
        <mrna_strand>AATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362027" ref_strand="+" ref_description="SGN-E362027 [cLPP-11-F8]">
      <seq>atttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaagggtacttataatcaatcttacgtagctcgccacattggaagagtctgagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacttgagtggatgatacaaattgtttggaatcatttactaacatatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11992" stop="13046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12292" g_stop="12537" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="246" r_length="246" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12746" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="371" r_length="125" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362027" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12292" e_stop="12537"/>
          <exon e_start="12622" e_stop="12746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACAC</genome_strand>
        <mrna_strand>ATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAAGGGTACTTATAATCAATCTTACGTAGCTCGCCAC....................................................................................ATTGGAAGAGTCTGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACTTGAGTGGATGATACAAATTGTTTGGAATCATTTACTAACATATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363778" ref_strand="+" ref_description="SGN-E363778 [cLPP-3-O16]">
      <seq>tttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11993" stop="13477"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12293" g_stop="12537" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="402" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="510" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13177" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="622" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363778" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12293" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</genome_strand>
        <mrna_strand>TTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359822" ref_strand="+" ref_description="SGN-E359822 [cLPP-9-O13]">
      <seq>tgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11995" stop="13081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12295" g_stop="12537" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="400" r_length="157" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E359822" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12295" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</genome_strand>
        <mrna_strand>TGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374229" ref_strand="+" ref_description="SGN-E374229 [TUS-33-L21]">
      <seq>gtgcttttttctcaatttcctttgttgtcaaatactaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtaaccattgctattgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttataggcgactggggacgaatgggtacttataatcaatctcacgtagctcgccacatggaaagagtctagacagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaagcaaccacgattacagaggaaatgtacaagcacaactcattccttaccttacgaaaattgatagcagatggatttgtttaaggtctctcgtagttaatgcagacattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggagcgctccctatacatgcatacatggctagcgtagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11996" stop="13492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12296" g_stop="12537" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="400" r_length="158" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="508" r_length="108" r_score="0.926"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13192" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="635" r_length="127" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E374229" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12296" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTC-GGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAA</genome_strand>
        <mrna_strand>GTGCTTTTTTCTCAATTTCCTTTGTTGTCAAATACTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAACCATTGCTATTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATAGGCGACTGGGGACGAATGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCTAGACAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAAGCAACCACGATTACAGAGGAAATGTACAAGCACAACTCATTCCTTACCTTACGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTCTCGTAGTTAATGCAG.........................................................................ACATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGAGCGCTCCCTATACATGCATACATGGCTAGCGTAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373630" ref_strand="+" ref_description="SGN-E373630 [TUS-33-K12]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11997" stop="13657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="12537" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="634" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13357" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="709" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E373630" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13357"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCA</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364506" ref_strand="+" ref_description="SGN-E364506 [cLPP-18-O8]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11997" stop="13478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="12537" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13178" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="619" r_length="113" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364506" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362867" ref_strand="+" ref_description="SGN-E362867 [cLPP-2-B22]">
      <seq>tgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11997" stop="13476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12297" g_stop="12537" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="241" r_length="241" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="398" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="506" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13176" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="617" r_length="111" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362867" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12297" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</genome_strand>
        <mrna_strand>TGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359769" ref_strand="+" ref_description="SGN-E359769 [cLPP-5-J6]">
      <seq>ctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgcttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12002" stop="12979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12302" g_stop="12537" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12679" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="294" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E359769" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>294</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12302" e_stop="12537"/>
          <exon e_start="12622" e_stop="12679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATT</genome_strand>
        <mrna_strand>CTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGCTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363954" ref_strand="+" ref_description="SGN-E363954 [cLPP-16-O11]">
      <seq>tttctcaatttcctttgggggcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattaggatttgaatctctagtgcaagtgcatctactaggcttaagaaatttgatcacccagctaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12003" stop="13012"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12303" g_stop="12537" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12712" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="326" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363954" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363954" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12303" e_stop="12537"/>
          <exon e_start="12622" e_stop="12712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATT-GTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATA</genome_strand>
        <mrna_strand>TTTCTCAATTTCCTTTGGGGGCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTAGGATTTG-AATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTGATCACCCAGCTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361006" ref_strand="+" ref_description="SGN-E361006 [cLPP-13-F4]">
      <seq>tcgatgacaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaangatcacatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12019" stop="13441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12317" g_stop="12537" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="378" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="486" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13141" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="562" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361006" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12317" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13141"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTA</genome_strand>
        <mrna_strand>TCGATGACAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAANGATCACATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364555" ref_strand="+" ref_description="SGN-E364555 [cLPP-18-B10]">
      <seq>ttatctctagtgcaagtgcatctactaggcttaagaaatggaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattgtgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttatgaaaattgatagcagatggatttgtttaaagtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12101" stop="13426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12401" g_stop="12537" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="294" r_length="157" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="402" r_length="108" r_score="0.944"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13126" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="463" r_length="61" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364555" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364555" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12401" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCC</genome_strand>
        <mrna_strand>TTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATGGAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTGTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTATGAAAATTGATAGCAGATGGATTTGTTTAAAGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361623" ref_strand="+" ref_description="SGN-E361623 [cLPP-12-I13]">
      <seq>tttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12139" stop="13254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12439" g_stop="12537" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="256" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12954" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="326" r_length="70" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361623" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12439" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12954"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</genome_strand>
        <mrna_strand>TTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361810" ref_strand="+" ref_description="SGN-E361810 [cLPP-12-G10]">
      <seq>ggacgaagggtttcttataatcaatctcacgtagctcggcacatggaaagagtcggagagaacttagacattgattttgcattatcaacgggtgacaatttgtatgataactgattaacacgagtaaatgatacaaattttgtagaatcatttactaacatatacacagcacagagcttacaaaaacaatggtacagcgtattaggcaaccacgatttcagatgaaatgtagaagcacaactgagtccttaccttacgaaaattgatagcagatggattagtgtaaagtctctcgtagataatgcagaaattgctgaaatattcatggtggatacaactccatctgaggagaaatatttcactactcctaatgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12196" stop="13437"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12496" g_stop="12537" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="199" r_length="157" r_score="0.936"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="307" r_length="108" r_score="0.889"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.86"/>
            <acceptor a_prob="0.964" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13137" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="379" r_length="72" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361810" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12496" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACA</genome_strand>
        <mrna_strand>GGACGAAGGGTTTCTTATAATCAATCTCACGTAGCTCGGCAC....................................................................................ATGGAAAGAGTCGGAGAGAACTTAGACATTGATTTTGCATTATCAACGGGTGACAATTTGTATGATAACTGATTAACACGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCACAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTTCAGATGAAATGTAGAAGCACAACTGAGTCCTTACCTTACGAAAATTGATAGCAGATGGATTAGTGTAAAGTCTCTCGTAGATAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATCTGAGGAGAAATATTTCACTACTCCTAATGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365077" ref_strand="+" ref_description="SGN-E365077 [cLPP-17-E17]">
      <seq>tcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12216" stop="13852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12516" g_stop="12537" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="179" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="287" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="415" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="544" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13489" g_stop="13552" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="608" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365077" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12516" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG</genome_strand>
        <mrna_strand>TCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E363948" ref_strand="+" ref_description="SGN-E363948 [cLPP-16-K15]">
      <seq>atctcacggagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12319" stop="13812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12519" g_stop="12537" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="176" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="284" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="412" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="541" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13489" g_stop="13512" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="565" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E363948" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12519" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13512"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATG</genome_strand>
        <mrna_strand>ATCTCACGGAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362320" ref_strand="+" ref_description="SGN-E362320 [cLPP-10-J18]">
      <seq>catggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12322" stop="13959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12537" g_stop="12537" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="158" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="266" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="394" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="523" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="591" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13638" g_stop="13659" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="613" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E362320" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12537" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGT</genome_strand>
        <mrna_strand>C....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365221" ref_strand="+" ref_description="SGN-E365221 [cLPP-17-P12]">
      <seq>catggaaagagtcagagagaagtgggacattgattccgtattatcaacgggtgacaatttctatgataacgggtcaacaggagtaaatgatacaaatggtgtagaatcatttactaacatatacacagcatagagcttacaaaaacaatggtacagcgtattatgcaaccacgattacagatgaaatgtacaatcacaactcagtccttaccttatgaaaattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12322" stop="13252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12537" g_stop="12537" g_length="1"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1" r_length="1" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="158" r_length="157" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12952" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="226" r_length="68" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365221" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>226</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12537" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGAT</genome_strand>
        <mrna_strand>C....................................................................................ATGGAAAGAGTCAGAGAGAAGTGGGACATTGATTCCGTATTATCAACGGGTGACAATTTCTATGATAACGGGTCAACAGGAGTAAATGATACAAATGGTGTAGAATCATTTACTAACATATACACAGCATAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTATGCAACCACGATTACAGATGAAATGTACAATCACAACTCAGTCCTTACCTTATGAAAATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547724" ref_strand="+" ref_description="SGN-E547724 [TUS-71-M2](-)">
      <seq>agaggaaatgtagaagcacaactcagtcctacccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12605" stop="14333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12905" g_stop="12992" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="216" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="345" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="413" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13638" g_stop="14042" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="807" r_length="394" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E547724" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12905" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="14042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATT</genome_strand>
        <mrna_strand>AGAGGAAATGTAGAAGCACAACTCAGTCCTACCCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTA----------GGGTT-AATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549560" ref_strand="+" ref_description="SGN-E549560 [TUS-71-I18](-)">
      <seq>aaaattgatagcagatggattttttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaaaaagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12644" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12944" g_stop="12992" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.94"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="176" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="305" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13638" g_stop="14054" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="779" r_length="406" r_score="0.892"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E549560" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12944" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="14054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAA</genome_strand>
        <mrna_strand>AAAATTGATAGCAGATGGATTT-TTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTA----------GGGTT-AATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCAAAAAAAAAAAAAAAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373629" ref_strand="+" ref_description="SGN-E373629 [TUS-33-K12](-)">
      <seq>catttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12799" stop="14333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13099" g_stop="13193" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="224" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="292" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13638" g_stop="13978" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="633" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="677" polyA_stop="688"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E373629" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13099" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>CATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223934" ref_strand="+" ref_description="SGN-E223934 [cLEL-19-J2](-)">
      <seq>gattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12843" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13143" g_stop="13193" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="180" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="248" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13638" g_stop="13869" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="480" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E223934" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13143" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATC</genome_strand>
        <mrna_strand>GATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E234602" ref_strand="+" ref_description="SGN-E234602 [cLEL-6-D6](-)">
      <seq>cgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12849" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13149" g_stop="13193" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13638" g_stop="13870" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E234602" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E234602" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13149" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCT</genome_strand>
        <mrna_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235082" ref_strand="+" ref_description="SGN-E235082 [cLEL-6-D6](-)">
      <seq>cgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcaacatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12849" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13149" g_stop="13193" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13638" g_stop="13870" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="475" r_length="233" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E235082" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13149" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCT</genome_strand>
        <mrna_strand>CGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E365011" ref_strand="+" ref_description="SGN-E365011 [cLPP-17-N17]">
      <seq>tccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="12859" stop="14277"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13159" g_stop="13193" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="164" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="232" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13638" g_stop="13978" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="573" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="583"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E365011" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E365011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13159" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>TCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360881" ref_strand="-" ref_description="SGN-E360881 [cLPP-13-A21]">
      <seq>catgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtaaaaaacaaattggattctttgtttttgttgatgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13040" stop="14323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13340" g_stop="13411" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="140" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13638" g_stop="13978" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="481" r_length="341" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="522"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E360881" ref_strand="-">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360881" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13340" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG--TTT-TT--TGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>CATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAAAAAACAAATTGGATTCTTTGTTTTTGTTGATGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223808" ref_strand="+" ref_description="SGN-E223808 [cLEL-19-J2](-)">
      <seq>ttagaagtgcaggacatcgcggtgacactcagatacttgtggatcgttttcttcctattcttagaaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13047" stop="14167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13347" g_stop="13411" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="133" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13638" g_stop="13869" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="365" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E223808" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13347" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13869"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATC</genome_strand>
        <mrna_strand>TTAGAAGTGCAGGACATCGCGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGA.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228960" ref_strand="+" ref_description="SGN-E228960 [cLEL-29-G23](-)">
      <seq>gatgtgatttttcatgaacggacatgaccactgtcttgaacatattagcgacactgaaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcatgtttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13195" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13495" g_stop="13556" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13638" g_stop="14062" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="486" r_length="425" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E228960" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228960" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13495" e_stop="13556"/>
          <exon e_start="13638" e_stop="14062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG-AAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</genome_strand>
        <mrna_strand>GATGT-GATTTTT-CATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225395" ref_strand="+" ref_description="SGN-E225395 [cLEL-17-G9](-)">
      <seq>tgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13336" stop="14333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13551" g_stop="13556" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13638" g_stop="14032" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="401" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="420"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E225395" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13551" e_stop="13556"/>
          <exon e_start="13638" e_stop="14032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</genome_strand>
        <mrna_strand>TGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E228864" ref_strand="+" ref_description="SGN-E228864 [cLEL-29-G23](-)">
      <seq>gttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcatgtttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13341" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13641" g_stop="14062" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E228864" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13641" e_stop="14062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</genome_strand>
        <mrna_strand>GTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373635" ref_strand="+" ref_description="SGN-E373635 [TUS-33-M2](-)">
      <seq>gcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13363" stop="14333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13663" g_stop="14041" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E373635" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>379</cumulative_length_of_scored_exons>
        <coverage percentage="1.030" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13663" e_stop="14041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGAT</genome_strand>
        <mrna_strand>GCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTA----------GGGTT-AATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E225837" ref_strand="+" ref_description="SGN-E225837 [cLEL-17-G9](-)">
      <seq>ggttcaaaggcatggagagcagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13366" stop="68430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13666" g_stop="14032" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14033" i_stop="14604" i_length="572">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14605" g_stop="14623" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="386" r_length="19" r_score="0.684"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E225837" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13666" e_stop="14032"/>
          <exon e_start="14605" e_stop="14623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATTGCAAATCTGCAATCTGGTATAATCTAATACACAAATGAGTACACACTATCAGTGTAAAAGATTTTTACAATACCTCTCCTCTGTCCTTAATTACTTGTCTATTTTTCCATCTCTAATTAGCACACCTATTAATAACTTTGAAAAAGGAACAACTTTTTAAAAATCTTTAGTTTTTAATTCATCTACTTCATAATTATTAGGGGTAAACTCGTTGTATCAATTATTGTTTTCTTAATAGGTGTGCTAATCTAAAAGTGGACAAGTAAGTAGGGTATAAAAAAACGAGAAGAGAGATTAATCTGGCCAATCAATATGTATCATTCGTTATCAATTCCCTTGTTGGAAAATTAATCCACAATAAATATATATTGCATGCTTTCTGTAATTTCCAATGTTCTTTGAGATACTATTGCTCTCTAGATATATATATAGCTCACATCTGTTTGTTTATTTCTTGCAAGCAGTTCTAAATTAATTTTTTGCTGCTGTTGCTTCACAAATATGACAGCGTCTAAGGTTACAATGAAGCTATTGATAGACAGCAAAAGCAAAAAAGTAATG</genome_strand>
        <mrna_strand>GGTTCAAAGGCATGGAGAGCAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346020" ref_strand="+" ref_description="SGN-E346020 [cTOF-24-G14]">
      <seq>aagaaaagagggagaaagaaaaagagaagaaaaaaaagaaagggatggtttttggagagaattttttttttacatcttgtgatagaaaaaaaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggttttttattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagctcgctgccccgaagaaggtgaaatcctttttcttttttttttctttttagatggtgtcattccaccttgctaactatttttttttggtttggtttcttgggtgacatcgattcgagtccattttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15604" stop="16589"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15904" g_stop="16289" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E346020" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15904" e_stop="16289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAG-AAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCC--TTT-TTTTTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGA</genome_strand>
        <mrna_strand>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAAAAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTTATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTCTTTTTTTTTTCTTTTTAGATGGTGTCATTCCACCTTGCTAACTA-TTTTTTTTTGGTTTGGTTTCTTGGGTGACATCGATTCGAGTCCATTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326764" ref_strand="+" ref_description="SGN-E326764 [cTOC-25-A24]">
      <seq>gaaaagaagaaaagagggagaaagaaaaagagaagaaaaagaagaagaaaaaaaagaaagggatggttttctggagagaattttttttttacatcttgtgatagaaaagaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggtttttgattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagcttgctgccccgaagaaggtaatcctttttttttctttcttcttttttagatgttgtcattccaccttgctaactatttttttttgttttgttttcttgtgtgacatcgattcgagtccactttggattccattcttgcattcctcgttgagccataaagtctcaaaacactttttccgagtcagccaaccccctgagaggatgtacaggtcgaaagcaaaaccattggagagctgctggaagtagcggattgcaggcatttggctgcgatttttgttttgaagctgtgtatctggtttatacacaatatatacactgtgatacaggttaaaaatccacaggaggcccaaactcaaaatctgaattgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15594" stop="16832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15928" g_stop="16532" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="649" r_length="607" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E326764" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15928" e_stop="16532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTT-TGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTT-TTT-TTC-TTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATG</genome_strand>
        <mrna_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTTCTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTTGCTGCCCCGAAGAAGGT-AATCCTTTTTTTTTCTTTCTTCTTTTTTAGATGTTGTCATTCCACCTTGCTAACTA-TTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCACTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGTCTCAAAACACTTTTTCCGAGTCAGCCAACCCCCTGAGAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGCTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTTAAAAATCCACAGGAGGCCCAAACTCAAAATCTGAATTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E390285" ref_strand="+" ref_description="SGN-E390285 [TUS-40-O1](-)">
      <seq>atcatttttaaaacttacttaacaagtgtatatcatcgcccgataatgtatacttatgtatacgggctgcaccatacgtccgccccccccccctaattccgaattttaattagaataggtgttcctctacgttcctctgccaatcatattttttgagcatatatatagtatatcatccctgtatatctgtgtatacaggatatatttaagcctgttcttcaactttcagaagttgaaaactcctttccataaacgtaatttccctgtcgtcaactccgattttgagtttgggcctcctgtggatgtttgacctgtatcacagtgtatatattgtgtataaaccagatacacagcttcaaaacaaaaatcgcagccaaatgcctgcaatccgccacttccagcagctctccaatggttttgcttgccacctgtacatcctttcaggggttgtctgactcgggaaaagtgttttgagcctttatggctcaacgaggaatgcaagaatggaatccaaagtggactcgaatcgatgtcacacaagaaaacaaaacaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17099" stop="15942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16799" g_stop="16242" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="557" r_length="557" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E390285" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E390285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16799" e_stop="16242"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCATTTTTTAAACCTGTTTAACAATTATATATCGTCGCCCGATAATGTATACTAATGTATACGGGCTGCACCCTGCGTCCGTATTAATTGCCTAATCCCGAATTTTAGTTAAAACAAGCATCCGTGTACGTTCCCCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCTCTGTATATCTGTGTATACAGGCTGTATATAAGCCTGTTTTTCAACTTTCGGAAGTTGAAAACTCCTTTCCAGAAACGCAATTTTCCTGTCATCAATTCAGATTTTGAATTTGGGCCTCCTGTGGATTTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAACTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCTACTTCCAGCAGCTCTCCAATGGTTTTGCTTTCGACCTGTACATCCTTTCAGGGGGTTGGCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAATGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</genome_strand>
        <mrna_strand>ATCATTTTTAAAACTTACTTAACAAGTGTATATCATCGCCCGATAATGTATACTTATGTATACGGGCTGCACCATACGTCCGCCCCCCCCCCCTAATTCCGAATTTTAATTAGAATAGGTGTTCCTCTACGTTCCTCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCCCTGTATATCTGTGTATACAGGATATATTTAAGCCTGTTCTTCAACTTTCAGAAGTTGAAAACTCCTTTCCATAAACGTAATTTCCCTGTCGTCAACTCCGATTTTGAGTTTGGGCCTCCTGTGGATGTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAGCTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCCACTTCCAGCAGCTCTCCAATGGTTTTGCTTGCCACCTGTACATCCTTTCA-GGGGTTGTCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAGTGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312705" ref_strand="+" ref_description="SGN-E312705 [cTOA-8-G23]">
      <seq>tttttttttttgttttcttgtgtgacatcgattcgagtccattttggattccattcttgcattcctcgttgagccataaagactcaaaacacttttcccgagtcagccaaccccctgaaaggatgtacaggtcgaaagcaaaaccattggagagctgctggaagtagcggattgcaggcatttggctgtgatttttgttttgaagttgtgtatctggtttatacacaatatatacactgtgatacaggccaaaaatccacaggaggcccaaactcaaaatctgaattgacgacaggaaaattacgtttctggaaaggagttttcaacttccgaaagttgaaaaacaggcttatataccagcctgtatacacagatataccagagatgatatactatatatatgctcaaaaaatatgattggcaggggaacgtacacggacgcttgttttaactaaaattcgggattaggcaattaatacggacgcggggtgcagcccgtatacatcagtatacattatcgggtgatgatatacacttgttaagtaagttttaaaaaatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15942" stop="17099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16242" g_stop="16799" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E312705" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E312705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16242" e_stop="16799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATA-CAGCCTGTATACACAGATATA-CAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAA-ACAGGTTTAAAAAATGAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGACTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGTGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGCCAAAAATCCACAGGAGGCCCAAACTCAAAATCTGAATTGACGACAGGAAAATTACGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACCAGCCTGTATACACAGATATACCAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGACGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCGGGGTGCAGCCCGTATACATCAGTATACATTATCGGGTGATGATATACACTTGTTAAGTAAGTTTTAAAAAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320939" ref_strand="+" ref_description="SGN-E320939 [cTOB-13-E2]">
      <seq>actgtgatacaggtcaaaaatccacaggaggcccaaattcaaaatctgaattgatgacaggaaaattgcgtttctggaaaggagttttcaacttccgaaagttgaaaaacaggcttatatacagcctgtatacacagatatacagagatgatatactatatatatgctcaaaaaatatgattggcaggggaacgtacacggatgcttgttttaactaaaattcgggattaggcaattaatacggacgcagggtgcagcccgtatacattagtatacattatcgggcgacgatatataattgttaaacaggtttaaaaaatgatacaggtacaaatatgcagagacgatatgcgaaatataggggaaatagctgaaaatgcgtatataaataaatgcagggctcaaaaggtccaaaatggatgctgatatacaccgtatacaacagtatacatcttttgtatactttatatctcctttttcaggaaattgggctaaggcccttcagttcccttttatcaacaggcccaataaccatttgtttttacaggttttttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16177" stop="17341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16477" g_stop="17041" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E320939" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320939" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16477" e_stop="17041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</genome_strand>
        <mrna_strand>ACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356241" ref_strand="+" ref_description="SGN-E356241 [cTOS-20-D24]">
      <seq>taaatagattaggacaggtgggccaaagcccaattggatggatttgggcaatcaagcccaagttcaaatatttttctctctttatttattatttgtttgaattaattagtgttttggtagaattttaataatctcctaaagagtagccatttttcattattttaaattttactattttattcacttttatcaccatttagttttccttaaattaattccctctaaacattttccttaagaaaaaaaaaagtaaaaagaatgaaatacaaaatatcaaaatgaattttctcttttacttagttaaaaatttttattttaaaagtcatttagtcaaatcgccggtcaaccgcaagttagcgggcatcccgagggcctaacaccttctcgagatgtacattgaacttcgaacccttttcaattgatttttaatctgtttttnaatcttttgaagtttttcttgattttgtcaaaaatcaagtggcgactccaattttgaaggtcggtttttctttaacaataagattaattgatttttcgaaacctagtcaattttttctcatttctccattttaacataacagtagtatattttttaagtaaaacacataatactcatgtaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16757" stop="17980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17057" g_stop="17679" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E356241" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17057" e_stop="17679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATT-CCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTAT-TTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</genome_strand>
        <mrna_strand>TAAATAGATTAGGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAGCCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCCTCTAAACATTTTCCTTAAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAACTTCGAACCCTTTTCAATTGATTTTTAATCTG-TTTTTNAATCTTTTGAAGTTTTTCTTGATTTTGTCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTTAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCATTTTAACAT-AACAGTAGTATATTTTTTAAGTAAAACACATAATACTCATGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E461706" ref_strand="+" ref_description="SGN-E461706 [cPRO-9-G14]">
      <seq>cactgctctctctctcaatacctcccactaccctcaatcacatgcactctgcctacatgatgatgtaaattctggttttctttagtcttcttttctgccctcagttcaaggctatgtagctaacttagccgcaaacaccattctgtagagcagactggatgatgagaattttgctagctgattctgactcaacatcagcacccttagctgagatacaaaattttacgttatttgttagttcatggaatgttggaggcattgcaccaccaaacgacttgaacatggaggacttgcttgatactcgaaacaacttggctgatatttatgttctcgggtttcaagaaattgtacctctgaatgctggaagtgttatagtgccagagaatacaactatatgcatgcaatggaattctcttattagcacagctcttaacaagatagatgtcaacaacataacccttcaggaggcagaggaagaagaaagtgtaagagtttacccactaaagaaagggagttccttgaagttcaatgtagaaaattcaacacaatttgaatgcataattagcaagcaaatggtgggaatatttattacagtatgggcacggtctccactccctccctatatcagtcatacaagtgtctcctgtgtaggctgtggtatttttggctaccttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26739" stop="28721"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27052" g_stop="27255" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="226" r_length="205" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27256" i_stop="27390" i_length="135">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27391" g_stop="27498" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="334" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27499" i_stop="28078" i_length="580">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28079" g_stop="28421" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="677" r_length="343" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E461706" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E461706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27052" e_stop="27255"/>
          <exon e_start="27391" e_stop="27498"/>
          <exon e_start="28079" e_stop="28421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTACCTCCAATCACATGTACTCTGCCTACATGATGATGTAAATTCTGGTTTTCTTTAGTCTTCTTTTCTGTCCTCAGTTCAAGGCTATGTAGCTAACGTAGCCGCAAACACCACTCTGTAGAGCAGACTGGATGATGAGAA-TATGTTAGCTGATTCTGACTCAACATCAGCACCCTTAGCTGAGATACAAAATTTTACGTACGGCAATTCAACAATAGCAACATCTACAAATATTCTATATACTTCAATGCCAATTTAACAATAGTAACATTCACAAATCTTCTATATACTTCTGTTTATCTCATACTTATTGTTTTTTTTCTTCTCAATAAGGTTATTTGTTAGTTCATGGAATGTTGGAGGCATTGCACCACCAAACGACTTGAACATGGAGGAATTGCTTGATACTCGAAACAACTTGGCTGATATTTATGTTCTCGGGTAACCTTTTACTTCAATATAATTCGTTGTACTATAGGTAGGTCAACTAAAGCACCTGATGGGCTGCATTTCGCATATGCAGCCACCCTTAGGGTAGCAGTGCCATGCAAATGCATCATCATCTGTGCCTATTTCAATGGGACAGAGCGGGGTGGGGCAAATACTTAACATGGCAGGGACGGGAAGCTCTTACGCAGGGCAGGTAAAACAAATTTTTTGAACTTCAAACGTGAGCGGAGAAAGGGTAGGGTAGTTAAAATTAATAAGTTCTACTGTATTAGATCAACTTTTTTTGAACCTATCTCTTGAAAAGCTGGACATAAGCCATTTTCTACGCGGGACAGGGAGGGCTAGGTGAGTTAAAATAGAAGGGGAAAAAATGCTAAGCACGGAAAGGCTGATACAAGTTGCAGCTTTTGTGGGGTAGGCTTCACCCGTCCCACCCCCTTTGTAATCCCAGGGCAACTGGTATCATGTGGCCTAATCAACGAAGTAGAGTGTATGGTAATATTTGCAGTATTTAATGGTCTAAATTCTACTTTGAGAATGTACAACTCTTGAGCAAACTACTTTTTATCAGGTTTCAAGAAATTGTACCGCTGAATGCTGGAAGTGTTATAGTGCCAGAGAATACAACTATATGCATGCAATGGAATTCTCTTATTAGCACAGCTCTTAACAAGTTAGATGTCAACAACATAACCCTTCAGGAGGCAGAGGAAGAAGAAAGTGTAAAAGTTTACCCACTAAAGAAAGGGAGTTCCTTGAAGTTCAATGTAGAAAACTCAACACAATTTGAATGCATAATTAGCAAGCAAATGGTGGGAATATTTATTACAGTATGGGCACGGTCTCCACTCCTTCCCTATATCAGTCATACAAGTGTCTCCTGTGTAGGCTGTGGTATTTTTGGCTACCTTGGA</genome_strand>
        <mrna_strand>CTCCCACTACCCTCAATCACATGCACTCTGCCTACATGATGATGTAAATTCTGGTTTTCTTTAGTCTTCTTTTCTGCCCTCAGTTCAAGGCTATGTAGCTAACTTAGCCGCAAACACCATTCTGTAGAGCAGACTGGATGATGAGAATTTTGCTAGCTGATTCTGACTCAACATCAGCACCCTTAGCTGAGATACAAAATTTTAC.......................................................................................................................................GTTATTTGTTAGTTCATGGAATGTTGGAGGCATTGCACCACCAAACGACTTGAACATGGAGGACTTGCTTGATACTCGAAACAACTTGGCTGATATTTATGTTCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAAATTGTACCTCTGAATGCTGGAAGTGTTATAGTGCCAGAGAATACAACTATATGCATGCAATGGAATTCTCTTATTAGCACAGCTCTTAACAAGATAGATGTCAACAACATAACCCTTCAGGAGGCAGAGGAAGAAGAAAGTGTAAGAGTTTACCCACTAAAGAAAGGGAGTTCCTTGAAGTTCAATGTAGAAAATTCAACACAATTTGAATGCATAATTAGCAAGCAAATGGTGGGAATATTTATTACAGTATGGGCACGGTCTCCACTCCCTCCCTATATCAGTCATACAAGTGTCTCCTGTGTAGGCTGTGGTATTTTTGGCTACCTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430359" ref_strand="+" ref_description="SGN-E430359 [STM-53-F23]">
      <seq>cactgctctctctctcaatacctcccactaccctcaatcacatgcactctgcctacatgatgatgtaaattctggttttctttagtcttcttttctgccctcagttcaaggctatgtagctaacttagccgcaaacaccattctgtagagcagactggatgatgagaattttgctagctgattctgactcaacatcagcacccttagctgagatacaaaattttacgttatttgttagttcatggaatgttggaggcattgcaccaccaaacgacttgaacatggaggacttgcttgatactcgaaacaacttggctgatatttatgttctcgggtttcaagaaattgtacctctgaatgctggaagtgttatagtgccagagaatacaactatatgcatgcaatggaattctcttattagcacagctcttaacaagatagatgtcaacaacataacccttcaggaggcagaggaagaagaaagtgtaagagtttacccactaaagaaagggagttccttgaagttcaatgtagaaaattcaacacaatttgaatgcataattagcaagcaaatggtgggaatatttattacagtatgggcacggtctccactccttccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="26739" stop="28665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27052" g_stop="27255" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="226" r_length="205" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27256" i_stop="27390" i_length="135">
            <donor d_prob="0.756" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27391" g_stop="27498" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="334" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27499" i_stop="28078" i_length="580">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28079" g_stop="28365" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="621" r_length="287" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E430359" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27052" e_stop="27255"/>
          <exon e_start="27391" e_stop="27498"/>
          <exon e_start="28079" e_stop="28365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCACTACCTCCAATCACATGTACTCTGCCTACATGATGATGTAAATTCTGGTTTTCTTTAGTCTTCTTTTCTGTCCTCAGTTCAAGGCTATGTAGCTAACGTAGCCGCAAACACCACTCTGTAGAGCAGACTGGATGATGAGAA-TATGTTAGCTGATTCTGACTCAACATCAGCACCCTTAGCTGAGATACAAAATTTTACGTACGGCAATTCAACAATAGCAACATCTACAAATATTCTATATACTTCAATGCCAATTTAACAATAGTAACATTCACAAATCTTCTATATACTTCTGTTTATCTCATACTTATTGTTTTTTTTCTTCTCAATAAGGTTATTTGTTAGTTCATGGAATGTTGGAGGCATTGCACCACCAAACGACTTGAACATGGAGGAATTGCTTGATACTCGAAACAACTTGGCTGATATTTATGTTCTCGGGTAACCTTTTACTTCAATATAATTCGTTGTACTATAGGTAGGTCAACTAAAGCACCTGATGGGCTGCATTTCGCATATGCAGCCACCCTTAGGGTAGCAGTGCCATGCAAATGCATCATCATCTGTGCCTATTTCAATGGGACAGAGCGGGGTGGGGCAAATACTTAACATGGCAGGGACGGGAAGCTCTTACGCAGGGCAGGTAAAACAAATTTTTTGAACTTCAAACGTGAGCGGAGAAAGGGTAGGGTAGTTAAAATTAATAAGTTCTACTGTATTAGATCAACTTTTTTTGAACCTATCTCTTGAAAAGCTGGACATAAGCCATTTTCTACGCGGGACAGGGAGGGCTAGGTGAGTTAAAATAGAAGGGGAAAAAATGCTAAGCACGGAAAGGCTGATACAAGTTGCAGCTTTTGTGGGGTAGGCTTCACCCGTCCCACCCCCTTTGTAATCCCAGGGCAACTGGTATCATGTGGCCTAATCAACGAAGTAGAGTGTATGGTAATATTTGCAGTATTTAATGGTCTAAATTCTACTTTGAGAATGTACAACTCTTGAGCAAACTACTTTTTATCAGGTTTCAAGAAATTGTACCGCTGAATGCTGGAAGTGTTATAGTGCCAGAGAATACAACTATATGCATGCAATGGAATTCTCTTATTAGCACAGCTCTTAACAAGTTAGATGTCAACAACATAACCCTTCAGGAGGCAGAGGAAGAAGAAAGTGTAAAAGTTTACCCACTAAAGAAAGGGAGTTCCTTGAAGTTCAATGTAGAAAACTCAACACAATTTGAATGCATAATTAGCAAGCAAATGGTGGGAATATTTATTACAGTATGGGCACGGTCTCCACTCCTTCCCT</genome_strand>
        <mrna_strand>CTCCCACTACCCTCAATCACATGCACTCTGCCTACATGATGATGTAAATTCTGGTTTTCTTTAGTCTTCTTTTCTGCCCTCAGTTCAAGGCTATGTAGCTAACTTAGCCGCAAACACCATTCTGTAGAGCAGACTGGATGATGAGAATTTTGCTAGCTGATTCTGACTCAACATCAGCACCCTTAGCTGAGATACAAAATTTTAC.......................................................................................................................................GTTATTTGTTAGTTCATGGAATGTTGGAGGCATTGCACCACCAAACGACTTGAACATGGAGGACTTGCTTGATACTCGAAACAACTTGGCTGATATTTATGTTCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGAAATTGTACCTCTGAATGCTGGAAGTGTTATAGTGCCAGAGAATACAACTATATGCATGCAATGGAATTCTCTTATTAGCACAGCTCTTAACAAGATAGATGTCAACAACATAACCCTTCAGGAGGCAGAGGAAGAAGAAAGTGTAAGAGTTTACCCACTAAAGAAAGGGAGTTCCTTGAAGTTCAATGTAGAAAATTCAACACAATTTGAATGCATAATTAGCAAGCAAATGGTGGGAATATTTATTACAGTATGGGCACGGTCTCCACTCCTTCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E223955" ref_strand="+" ref_description="SGN-E223955 [cLEL-19-L6](-)">
      <seq>agccttgttgaacagtttttaccattcgtgaagcagttctaaacttctagtaatggcaatagtgattgttcaataacaacatacccagtgcaattctacaagtggggtctggaaagggtagagcgtgtacaaaaccttacccctaccttagaagatagagagattgtttctcatagacccttggctcaagaagaagcatatcaaagcagttcgggaatagtgattattgtgtatggtaaatacactagaacatcagaaatattcaaacaaaaccaccagctagcagaacgcagtttactggataaaggaacagtgaaaaaaagaaattaagagcctagaatttgggtccgaaatgatgaggaaaacttgtatacttactaaagtttcgtgttataggtttctcttttgtcgctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29622" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29922" g_stop="30336" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30337" i_stop="31112" i_length="776">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.141" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31113" g_stop="31136" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="440" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E223955" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E223955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29922" e_stop="30336"/>
          <exon e_start="31113" e_stop="31136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTAC-AAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACAGTAAGGGCAGCAAGGGGATGATGAATTACTGGCTGATTCATTCCAACCTTTTTATTTATTTGCAAATAAGAAGAAAAAAAAAGAGAGAAGGGTTGTGGGAAGGTGAGGCAAGCATAATTTGTTGAATAACCTTTTAGGAAACATGAATTTCCATATTGATCCAGAAAGGGAATATAAGGTTACATTCAAAATACATGCGGCAAAAGAAACTATAAAATGCACAGCCAAAAAAAAGAAGTGATTAAGTGCATGTAGATTATTGTACATTAACGAAAACAAAAAGTACAAATGTTTTCGCCATGACAGAGAGTTTGCATATTTGCATTTCCATTTACACAATAGCAGAAAGGGAAAGAACAAACTACTGGTAGTTGTTCAATTGTTGTAAACAACAGAGAAGTTCATAAGATGCACGCAAAAGGCAAATACCCCAATTACTATGCTGAGAGGCAATTCATATAGAAAGACAACCAACATTCAGATTACTCAAAGTTCAGGTCATTGTAATAAGCAAAATATTTAGCATGAATACAAATGCGAACTGAACAACACCCAAGTAGCATATGTCCAACTAAACAAACTTGCTTTACTGTCATCCTTTTTTCTGAAAAGATCGGTAGCTCTAATTTTCTATTAAACTTCCATCTAATTCTCTAATGCTCACATCACCATTTGCTCTTTATTTTAGATTACCATTGTTAATAGTGTGTCCAAGCAGAATCATGTGCTTGAGGTATAACCTTCACAGTATCTTTCCTTTATACTTTGCATGATAGAACACTTAAAAAATAAAGCGAAAA</genome_strand>
        <mrna_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAAAGGGTAGAGCGTGTACAAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E430360" ref_strand="+" ref_description="SGN-E430360 [STM-53-F23]">
      <seq>ttttttattttgaatataaccttatattccctttctggatcaatatggatttcatgtttcccaaaaggtaattcaacaaattaagcttgcctcaccttcccacaacccttttcttttttttttctcttatttgcaaaaaaataaaaaggttggaatgaatcagccagtaattcatcatccccttgctgcccttactcttgcaacaaaagagaaacctataacacgaaatgttagtaagtgtacaagttttcctcatcattttggacccaaattctaggctcttaatttcttttttcactgttcctttatccagttattgtggtctgctagctggtggttttgtttgaatacttctggtgttgtagtgtatttaccatacacaataatcactattcccaaactgctttaatatgcttcttcttgagccgagggtctatcagaaacaatctctctacctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="30831" stop="29772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30534" g_stop="30070" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E430360" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E430360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30534" e_stop="30070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATGTATTTTGAATGTAACCTTATATTCCCTTTCTGGATCAATATGGAAATTCATGTTTCCTAAAAGGTTATTCAACAAATTATGCTTGCCTCACCTTCCCACAACCCTTCTCTCTTTTTTTTTCTTCTTATTTGCAAATAAATAAAAAGGTTGGAATGAATCAGCCAGTAATTCATCATCCCCTTGCTGCCCTTACTGTAGCGACAAAAGAGAAACCTATAACACGAAACTTTAGTAAGTATACAAGTTTTCCTCATCATTTCGGACCCAAATTCTAGGCTCTTAATTTCTTTTTTTCACTGTTCCTTTATCCAGTAAACTGCGTTCTGCTAGCTGGTGGTTTTGTTTGAATATTTCTGATGTTCTAGTGTATTTACCATACACAATAATCACTATTCCCGAACTGCTTTGATATGCTTCTTCTTGAGCCAAGGGTCTATGAGAAACAATCTCTCTATCTTCT</genome_strand>
        <mrna_strand>TTTTTTATTTTGAATATAACCTTATATTCCCTTTCTGGATCAATATGG-ATTTCATGTTTCCCAAAAGGTAATTCAACAAATTAAGCTTGCCTCACCTTCCCACAACCCTTTTCT-TTTTTTTTTC-TCTTATTTGCAAAAAAATAAAAAGGTTGGAATGAATCAGCCAGTAATTCATCATCCCCTTGCTGCCCTTACTCTTGCAACAAAAGAGAAACCTATAACACGAAATGTTAGTAAGTGTACAAGTTTTCCTCATCATTTTGGACCCAAATTCTAGGCTCTTAATTTC-TTTTTTCACTGTTCCTTTATCCAGT-TATTGTGGTCTGCTAGCTGGTGGTTTTGTTTGAATACTTCTGGTGTTGTAGTGTATTTACCATACACAATAATCACTATTCCCAAACTGCTTTAATATGCTTCTTCTTGAGCCGAGGGTCTATCAGAAACAATCTCTCTACCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E224329" ref_strand="+" ref_description="SGN-E224329 [cLEL-19-L6](-)">
      <seq>aagattgtttctcatagacccttggctcaagaagaagcatatcaaagcagttcgggaatagtgattattgtgtatggtaaatacgctagaacatcagaaatattcaaacagaaccaccagctagcagaacgcagtttactggataaaggaacagtgaaaaaaagaaattaagagcctagaatttgggtccgaaatgatgaggaaaccttgtatccttactaaagtttcgtgttataggtttctcttttgtcgctaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29781" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30080" g_stop="30339" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30340" i_stop="30406" i_length="67">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30407" g_stop="30425" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="279" r_length="19" r_score="0.789"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E224329" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E224329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30080" e_stop="30339"/>
          <exon e_start="30407" e_stop="30425"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACAGTAAGGGCAGCAAGGGGATGATGAATTACTGGCTGATTCATTCCAACCTTTTTATTTATTTGCAAATAAGAAGAAAAAAAAAGAGAGAA</genome_strand>
        <mrna_strand>AAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACGCTAGAACATCAGAAATATTCAAACAGAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAACCTTGTATCCTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTAAAAAA...................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745008" ref_strand="+" ref_description="SGN-E745008 [GI|1929055]">
      <seq>gaattcggcacgagcctctataaatcttttttttccccttctctctctttttgtgtttgttcagacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgtcgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36173" stop="47238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36473" g_stop="36582" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="124" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="176" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="250" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="314" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="427" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="475" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="637" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="811" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="895" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="951" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="1082" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1175" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1176" r_stop="1240" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1384" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1428" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1429" r_stop="1512" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1513" r_stop="1586" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1587" r_stop="1699" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1700" r_stop="1795" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="46526" g_stop="46937" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1796" r_stop="2207" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2208" polyA_stop="2225"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E745008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2193</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36473" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTCGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E447522" ref_strand="+" ref_description="SGN-E447522 [cSTA-26-J14]">
      <seq>ctttttttccccttctctttcttttgtgtttgttcggacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattacccagggttgcaatatctggatggtttcccagaggttaaggttgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaagtggtggaagtggccatgaacctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgactcaattctcgctggcatacgagctgtcacaggtcccatgggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36186" stop="39802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36485" g_stop="36582" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="149" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="223" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="287" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="400" r_length="113" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39502" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="433" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E447522" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E447522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36485" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGC</genome_strand>
        <mrna_strand>CTTTTTTTCCCCTTCTCTTTC-TTTTGTGTTTGTTCGGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTACCCAGGGTTGCAATATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTTGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAACCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGACTCAATTCTCGCT.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745780" ref_strand="+" ref_description="SGN-E745780 [GI|47105090]">
      <seq>ggtgtttgttcagacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgttgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36211" stop="47238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36510" g_stop="36582" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="125" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="199" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="263" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="376" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="424" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="496" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="586" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="760" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="844" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="845" r_stop="900" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="901" r_stop="1031" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="1124" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1125" r_stop="1189" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1190" r_stop="1333" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1334" r_stop="1377" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1378" r_stop="1461" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1462" r_stop="1535" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1536" r_stop="1648" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1649" r_stop="1744" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="46526" g_stop="46937" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1745" r_stop="2156" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2157" polyA_stop="2172"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E745780" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2156</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36510" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>GGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202842" ref_strand="+" ref_description="SGN-E202842 [cLEB-1-I20]">
      <seq>gcacgagaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36228" stop="41520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36526" g_stop="36582" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="247" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="360" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="408" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="480" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="570" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41220" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="671" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E202842" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36526" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATC</genome_strand>
        <mrna_strand>GCACGAGAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281372" ref_strand="-" ref_description="SGN-E281372 [cLEL-1-N4](-)">
      <seq>gcacgagaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36230" stop="39636"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36526" g_stop="36582" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="109" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="183" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="247" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39336" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="324" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E281372" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>324</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36526" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGAC</genome_strand>
        <mrna_strand>GCACGAGAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542308" ref_strand="+" ref_description="SGN-E542308 [TUS-63-I19]">
      <seq>acaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgttgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaacaggagctgctgtagctgaccttcaacagtagatgtggtggtttctcatgttctgaaggagatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36230" stop="42022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36530" g_stop="36582" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="105" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="179" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="243" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="356" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="404" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="476" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="566" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="740" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41646" g_stop="41722" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="741" r_stop="816" r_length="76" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E542308" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36530" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41722"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTT</genome_strand>
        <mrna_strand>ACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAAACAGGAGCTGCTGTAGCTGACCTTCAA-CAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314348" ref_strand="+" ref_description="SGN-E314348 [cTOA-21-H10]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagaaggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaaagcaaacgtgcatcagaaatggttgggacaatgggcgttgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36234" stop="41515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36582" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="562" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41215" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="658" r_length="96" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E314348" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCG</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAAGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314387" ref_strand="+" ref_description="SGN-E314387 [cTOA-21-G10]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaagcattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36234" stop="40335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36582" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40035" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="524" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E314387" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTG</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAAGCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E417546" ref_strand="+" ref_description="SGN-E417546 [STM-25-L3]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattacccagggttgcaatatctggatggtttcccagaggttaaggttgtcttgcatgctagtgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgaacctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgactcaattcttgctggcatacgagctgtcacaggtcccatgggatgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgccgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36234" stop="40312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36582" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="0.938"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="472" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40012" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="501" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E417546" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E417546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTT</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTACCCAGGGTTGCAATATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTTGTCTTGCATGCTAGTGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAACCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGACTCAATTCTTGCT.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGATGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCCGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314130" ref_strand="+" ref_description="SGN-E314130 [cTOA-21-G11]">
      <seq>agcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttgggttggctgctgaacaagcaaaatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36234" stop="40124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36534" g_stop="36582" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="101" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="175" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="239" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="352" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="400" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39824" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="456" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E314130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36534" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGA</genome_strand>
        <mrna_strand>AGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGGTTGGCTGCTGAACAAGCAAAATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E326925" ref_strand="+" ref_description="SGN-E326925 [cTOC-18-D21]">
      <seq>aacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacngtgcagctgaaagcaaacgtgcatcagaaatggttgggancatgggcngtgcgttatctgtttgcacgttgccagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36241" stop="41538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36541" g_stop="36582" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="94" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="232" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="393" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="465" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="555" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41238" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="674" r_length="119" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E326925" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E326925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36541" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGG</genome_strand>
        <mrna_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACNGTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGGANCATGGGCNGTGCGTTATCTGTTTGCACGTTGCCAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328534" ref_strand="+" ref_description="SGN-E328534 [cTOC-23-G8]">
      <seq>aacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgntcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaaagcaaacgtgcatcagaaatggttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36241" stop="41500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36541" g_stop="36582" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="94" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="232" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="345" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="393" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="465" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="555" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41200" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="636" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E328534" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36541" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGG</genome_strand>
        <mrna_strand>AACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGNTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAAGCAAACGTGCATCAGAAATGGTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317027" ref_strand="+" ref_description="SGN-E317027 [cTOA-27-K9]">
      <seq>cattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaaatggccatgagcctgctcatgctggatttgttggagaaaggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaagtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagaccagatggtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36245" stop="40142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36544" g_stop="36582" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="91" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="165" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="229" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="342" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="390" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="462" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="39990" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="469" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E317027" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E317027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36544" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="39990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAA</genome_strand>
        <mrna_strand>CATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAATGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAAGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAAGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGACCAG...............................................................................................................................................ATGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E366492" ref_strand="+" ref_description="SGN-E366492 [cLPT-13-K10]">
      <seq>aaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcaatatctggatggtttcccagaggttaaggttgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcacgtggtggaagtggccatgaacctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgactcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaattgtcggtgatgactgtgctttaccacctccaagaggcattgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36369" stop="40334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36572" g_stop="36582" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="63" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="137" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="201" r_length="64" r_score="0.969"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="314" r_length="113" r_score="0.982"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="362" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="434" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40034" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="485" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E366492" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E366492" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36572" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCT</genome_strand>
        <mrna_strand>AAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAATATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTTGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAACCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGACTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATTGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466986" ref_strand="+" ref_description="SGN-E466986 [cPRO-26-P17]">
      <seq>gttgactcaattcttgctgtcccatgggatgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgccgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacacttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgatgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcattatctgtttgtacattgccaggacaggtgacttcagaccgtttaggcccaggaaagatggagcttggtcttggaatacatggggaaccaggagctgctgttgctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39189" stop="43356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39355" g_stop="39372" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39373" i_stop="39488" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39489" g_stop="39517" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="47" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="119" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="209" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="383" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="467" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="523" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="654" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43113" g_stop="43124" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="666" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E466986" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39355" e_stop="39372"/>
          <exon e_start="39489" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTT</genome_strand>
        <mrna_strand>GTTGACTCAATTCTTGCT....................................................................................................................GTCCCATGGGATGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCCGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACACTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGATGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCATTATCTGTTTGTACATTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGAAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTTGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466766" ref_strand="+" ref_description="SGN-E466766 [cPRO-26-C3]">
      <seq>gtcacaggtcccatgggatgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgccgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacacttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgatgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcattatctgtttgtacattgccaggacaggtgacttcagaccgtttaggcccaggaaagatggagcttggtcttggaatacatggggaacccagagctgctgttgctgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39182" stop="41593"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39482" g_stop="39517" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="108" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="198" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="372" r_length="174" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E466766" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39482" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA</genome_strand>
        <mrna_strand>GTCACAGGTCCCATGGGATGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCCGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACACTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGATGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCATTATCTGTTTGTACATTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGAAAGATGGAGCTTGGTCTTGGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412027" ref_strand="+" ref_description="SGN-E412027 [STM-15-L5]">
      <seq>ctatactggtgatcgactgaattttggtttggctgccgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacacttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgatgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcattatctgtttgtacattgccaggacaggtgacttcagaccgtttaggcccaggaaagatggagcttggtcttggaatacatggggaaccaagagctgctgttgctgaccttcaaccagtaaatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39471" stop="43233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39771" g_stop="39840" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="160" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="334" r_length="174" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="418" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="0.98"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="474" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42914" g_stop="42933" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="494" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E412027" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39771" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="42933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGA</genome_strand>
        <mrna_strand>CTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCCGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACACTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGATGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCATTATCTGTTTGTACATTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGAAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAAGAGCTGCTGTTGCTGACCTTCAACCAGTAAATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268155" ref_strand="+" ref_description="SGN-E268155 [cLEI-15-M24]">
      <seq>cgactgaattttggtttggctgctgaacaagcaaaatttgaacgttataaagtcgagatggtaatcgccggtgatgactgtgctttaccacctccaataggcattgctggcctaaaagggttggcaaggacgcttatcgttcacaaagctgccggagctgcaccagcttgcggtcttccccttgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39484" stop="41461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39784" g_stop="39840" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="147" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41161" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="189" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E268155" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268155" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39784" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGAC</genome_strand>
        <mrna_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATTTGAACGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGCCGGTGATGACTGTGCTTTACCACCTCCAATAGGCATTGCTGGCCTAAAAGGGTTGGCAAGGACGCTTATCGTTCACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGAGCTGCACCAGCTTGCGGTCTTCCCCTTGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323558" ref_strand="+" ref_description="SGN-E323558 [cTOC-2-K21]">
      <seq>gatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="40972" stop="43501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41272" g_stop="41293" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="106" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="162" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="293" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43113" g_stop="43201" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="382" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E323558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41272" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCT</genome_strand>
        <mrna_strand>GATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457597" ref_strand="+" ref_description="SGN-E457597 [cPRO-3-M11]">
      <seq>caggagctgctgttgctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttcctccatcacattctatcaagagtgacaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgaggcagctattgaagcagcagctactgaggttgtaaatcttagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgcagtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacaatcaatgaaattggagcttctattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcaaagttgaaagaaaacgctgagtcggttgtcacagctcttcactgggctgcttcacttgaagctgctatcgctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41356" stop="45601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41656" g_stop="41729" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="261" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="354" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="563" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="607" r_length="44" r_score="0.977"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="691" r_length="84" r_score="0.964"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="692" r_stop="765" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="45270" g_stop="45301" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="766" r_stop="797" r_length="32" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E457597" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E457597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41656" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCT</genome_strand>
        <mrna_strand>CAGGAGCTGCTGTTGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCTCCATCACATTCTATCAAGAGTGACAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGGCAGCTATTGAAGCAGCAGCTACTGAGGTTGTAAATCTTAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCAGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAATCAATGAAATTGGAGCTTCTATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCAAAGTTGAAAGAAAACGCTGAGTCGGTTGTCACAGCTCTTCACT.........................................................................................GGGCTGCTTCACTTGAAGCTGCTATCGCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429611" ref_strand="+" ref_description="SGN-E429611 [STM-52-I4]">
      <seq>caggagctgctgttgctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttcctccatcacattctatcaagagtgacaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgaggcagctattgaagcagcagctactgaggttgtaaatcttagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaagtgcagtggctatacttgaagacatgaagaagtactatccgttgaatgaccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41356" stop="45242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41656" g_stop="41729" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="261" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="354" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="563" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="607" r_length="44" r_score="0.955"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="44923" g_stop="44942" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="608" r_stop="627" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E429611" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41656" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="44942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTG</genome_strand>
        <mrna_strand>CAGGAGCTGCTGTTGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCTCCATCACATTCTATCAAGAGTGACAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGGCAGCTATTGAAGCAGCAGCTACTGAGGTTGTAAATCTTAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAAGTGCAGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305048" ref_strand="+" ref_description="SGN-E305048 [cLEX-10-B2]">
      <seq>caggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="41356" stop="44141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41656" g_stop="41729" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="130" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="261" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="354" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="419" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43794" g_stop="43841" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="467" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E305048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41656" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAG</genome_strand>
        <mrna_strand>CAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203243" ref_strand="+" ref_description="SGN-E203243 [cLEB-3-G19]">
      <seq>gcacgaggattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgctgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagatggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcacaaacagtcaatgaaattggagcctccattggaagagtaatggggggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42613" stop="45294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="147" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="0.98"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="240" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="305" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="449" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="493" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="44923" g_stop="44994" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="565" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E203243" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="44994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAAC</genome_strand>
        <mrna_strand>ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGCTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGATGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCACAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E542306" ref_strand="+" ref_description="SGN-E542306 [TUS-63-I19](-)">
      <seq>gcattttagatcgtttagatgctccaactaaagctccaaattggcctgttgtgctgaaggcaaccggcntcntgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagcctcnagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgtttctcttctcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42845" stop="47009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43145" g_stop="43205" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="124" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="268" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="312" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="396" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="470" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="583" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="679" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46526" g_stop="46717" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="869" r_length="190" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E542306" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>873</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E542306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43145" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATT</genome_strand>
        <mrna_strand>GC-ATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTT-GTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCNTCNTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCTCNAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATG-TTTCTC-TTCTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594120" ref_strand="+" ref_description="SGN-E594120 [37364]">
      <seq>aaagctccccctcatttatatttcccttagtaaaagaactagagtaacagagagaaaagttcatattaggtaattcactagtatcctcttatctgtgggtgatataactagcacataatctgtatgatttttgtagcaatttaccctgtataagataatagatctactttgcttactggaagttaaaaatttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43035" stop="43801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43307" g_stop="43497" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="196" polyA_stop="205"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E594120" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>191</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594120" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43307" e_stop="43497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAG---CAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGA-TTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAG</genome_strand>
        <mrna_strand>AAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGTAACAGAGAGAAAAGTTCATATTAGGTAATTCACTAGTATCCTCTTATCTGTGGGTGATATAACTAGCACATAATCTGTATGATTTTTGTAGCAATTTACCCTGTATAAGATAATAGATCTACTTTGCTTACTGGAAGTTAAAAATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304607" ref_strand="+" ref_description="SGN-E304607 [cLEX-11-F12]">
      <seq>gcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43198" stop="45659"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="209" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="253" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="337" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="411" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="45270" g_stop="45359" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="501" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E304607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATAC</genome_strand>
        <mrna_strand>GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229900" ref_strand="+" ref_description="SGN-E229900 [cLEL-33-J15](-)">
      <seq>attatccaccgagtttagaaggctgtgattggtccaaagaacgggtcacaggcggatttctcagttgtcaaaaaaaataattattcactaacagacaatatgtgtctttgtttgttttccctctttcctgcttgcaccgtctgtggtgtggttatttcagagtgttctgcttgtacacatctgcttgcagcattgtttgctcttgggaaatccctgtaattaattgttgggtatagataggtttcattttttaaacaggggaggtagaagtctcttcatgagttaaaacacgaggttttgtgaaagacagcttgagacggcagaagttgtgtttaatctcctttgtagtcaacttaatgatatgatatgaaaaatcagctgctattgcatgttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="43998" stop="44994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44298" g_stop="44693" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="414"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E229900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44298" e_stop="44693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</genome_strand>
        <mrna_strand>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAACGGGTCACAGGCGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230255" ref_strand="+" ref_description="SGN-E230255 [cLEL-33-J15](-)">
      <seq>tatccaccgagtttagaaggctgtgattggtccaaagagcgggtcacagacggatttctcagttgtcaaaaaaaataattattcactaacagacaatatgtgtctttgtttgttttccctctttcctgcttgcaccgtctgtggtgtggttatttcagagtgttctgcttgtacacatctgcttgcagcattgtttgctcttgggaaatccctgtaattaattgttgggtatagataggtttcattttttaaacaggggaggtagaagtctcttcatgagttaaaacacgaggttttgtgaaagacagcttgagacggcagaagttgtgtttaatctcctttgtagtcaacttaatgatatgatatgaaaaatcagctgctattgcatgttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44000" stop="44994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44300" g_stop="44693" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="412"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E230255" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44300" e_stop="44693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</genome_strand>
        <mrna_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733077" ref_strand="+" ref_description="SGN-E733077 [LB03DF08]">
      <seq>tgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44619" stop="47238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="94" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="168" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="281" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="377" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46526" g_stop="46937" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="789" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="790" polyA_stop="802"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E733077" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</genome_strand>
        <mrna_strand>CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429612" ref_strand="-" ref_description="SGN-E429612 [STM-52-I4]">
      <seq>agagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcaaagttgaaagaaaacgctgagtcggttgtcacagctcttcactgggctgcttcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacacttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgtggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgccttagctgtgaaggagaagtataatacagcataagcatatttaattggccattcctattacttcctgcaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44678" stop="46990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44978" g_stop="45006" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="103" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="216" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="312" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46526" g_stop="46690" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="477" r_length="165" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E429612" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E429612" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44978" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAA</genome_strand>
        <mrna_strand>AGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCAAAGTTGAAAGAAAACGCTGAGTCGGTTGTCACAGCTCTTCACT.........................................................................................GGGCTGCTTCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACACTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGTGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCCTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATTGGCCATTCCTATTACTTCCTGCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281582" ref_strand="-" ref_description="SGN-E281582 [cLEL-1-N4]">
      <seq>ggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44801" stop="47001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44999" g_stop="45006" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="0.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="82" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="195" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="291" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46526" g_stop="46701" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="467" r_length="176" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E281582" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281582" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44999" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTT</genome_strand>
        <mrna_strand>GGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552280" ref_strand="+" ref_description="SGN-E552280 [cTSB-3-G24]">
      <seq>atatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45010" stop="47229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45310" g_stop="45382" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46526" g_stop="46929" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="573" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="600"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E552280" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E552280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45310" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</genome_strand>
        <mrna_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553283" ref_strand="+" ref_description="SGN-E553283 [cTSB-4-B11]">
      <seq>atatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45010" stop="47229"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45310" g_stop="45382" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="169" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46526" g_stop="46929" g_length="404"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="573" r_length="404" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="574" polyA_stop="601"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E553283" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45310" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46929"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</genome_strand>
        <mrna_strand>ATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E412028" ref_strand="-" ref_description="SGN-E412028 [STM-15-L5]">
      <seq>aaagagaggttgaatgctggggacgaccctgtggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgccttagctgtgaaggagaagtataatacagcataagcatatttaattggacattcctattacttcctgcaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45170" stop="46990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45377" g_stop="45382" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.961" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="102" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46526" g_stop="46690" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="267" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E412028" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>267</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412028" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45377" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAA</genome_strand>
        <mrna_strand>AAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGTGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCCTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATTGGACATTCCTATTACTTCCTGCAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E614377" ref_strand="+" ref_description="SGN-E614377 [64163]">
      <seq>ttgaatgctggggacgaccctgtggatgctttcattatttctgctgaggcagcatctgctggcgccgagtcaaccaagcacatgcaggcgcaggctggccgttcaaactatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgccttagctgtgaaggagaagtataatacagcataagcatatttaattggccattcctattacttcctgcaggaatgttttatctcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="45175" stop="47002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45475" g_stop="45567" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="0.98"/>
            <acceptor a_prob="0.785" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46526" g_stop="46704" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="272" r_length="179" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E614377" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E614377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45475" e_stop="45567"/>
          <exon e_start="46526" e_stop="46704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCT</genome_strand>
        <mrna_strand>TTGAATGCTGGGGACGACCCTGTGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGCGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAAACTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCCTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATTGGCCATTCCTATTACTTCCTGCAGGAATGTTTTATCTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540856" ref_strand="+" ref_description="SGN-E540856 [TUS-61-F15](-)">
      <seq>ttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcatctcttcgcgcaccttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46260" stop="47259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46560" g_stop="46962" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E540856" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540856" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46560" e_stop="46962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548454" ref_strand="+" ref_description="SGN-E548454 [TUS-61-F15]">
      <seq>ttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcatctcttcgcgcacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46260" stop="47259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46560" g_stop="46962" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E548454" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>403</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E548454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46560" e_stop="46962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289940" ref_strand="+" ref_description="SGN-E289940 [cLET-9-H7]">
      <seq>tgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactntattggaacaatggattttcttattctgctacttttagcatctcttcgcgcacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="46261" stop="47259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46561" g_stop="46962" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E289940" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46561" e_stop="46962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>TGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTNTATTGGAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712465" ref_strand="+" ref_description="SGN-E712465 [FB04DG04]">
      <seq>gtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaattcagccctaacagccaacttcaaattgtgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgatagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgtttttgctcctttaattctctagatttggtgcaattttattttgttgttgctcgttgtttggcacttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggtcccgtggttttttactcttcacatcgaaaggtttttcncgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggggccgggacccctttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53365" stop="33980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53061" g_stop="52531" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="549" r_length="528" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52530" i_stop="48155" i_length="4376">
            <donor d_prob="0.836" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48154" g_stop="48099" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="605" r_length="56" r_score="0.661"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48098" i_stop="47821" i_length="278">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47820" g_stop="47800" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="626" r_length="21" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E712465" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53061" e_stop="52531"/>
          <exon e_start="48154" e_stop="48099"/>
          <exon e_start="47820" e_stop="47800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGATCTTTTTCTCCTTCCTATGTGGAAAAATAAAAGTCCAATTTGGACCAATCCATTTTTGCCCATAGGCCTATTCTTATTAGGCAAATATAAGAATATTTA-GGTCTTATTTTCAAATACAC-AGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTTAAATCGAGAAGGGAAAGTATAGATTTGGGTATTCTTCCACTGTTATCCATCTTGTTAGGACCGGAAATAAGTAGGTGTAAACGCGGAAGGTAGCAAAGCAAACCTCGAAAGACCACGAGTAAGAAGACAATGAGAAATATACCAAAAGACACAGAGATTTAACGTGGTTCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTCGGAATACATGAGAGGTTCACACAAGTGATAACGTATCAAGCTTGTGATCCACAAATTCTCCCTCTAACCAAAACTCTCAAAGCCCTTAAGACTACATTGTGAATGCTGATTAAGTTAGAAGGAACAACATGCCTCTATTTATAGAGTCCTAAACCTTTTTCTACAAGAAAAGGATTAGTCAATCCAAAACCTTTTCCTACAAGGAAAACCTATTTATGGTAAGAAATTTAGGGCAAATAAAACCCAACAATCACAACTCATGAATTCCCATTATCTATATCCTCTAGGAGATGCAAAGTATATTTTATGTAAACTCTAACCATCATACTAATTTGGAAAAATTCTTGCTCTAATTATTTTTAAGTAAAGAAAATTCGACTAATTAAAAGACTTAAAAGAACACGAGCTTAAAGGTATTTGATGTTTCAACATATATATACATCTAAGGGACATTGAGTAAGATATTCATTATTAATTTGATGATTAACTTAAAAAAAGGTGATTAGTTTAATAAAAAATAATTATAGAGGAAGGATGATTAGCAAAGAAATTCTATATTAAGATGTTGCATGTGTGGGAGAATGCAAATTCATATCATTGTCTCTATTCTTTCAACACACAATAAAATACATTTCTTTGTTTATTCAATAACTTAAAAGACTTTTTTTTTTTTAATCTTCCTTTGTATTGTCATTATCCATCAAACACCGAACAAAAAAGAAAGATGGAGATTTAGGTGGATTCAGAATTTAAATTCGATAGAGTACTCCTTAAATCCATTATACTTAAGAAATTAGAGTATTCAAAATTAACAACTTTCTTTTTGCGATTTTTGATTGTTTAAATATACTCTATGTTAGAAAATATTGAGGTCATTTGGAAGTATTAACTATATATGCTACAACCTCTATTTGGTTTAATTATGATATGACAATTGGATTAGTTTGAAAAGACATATCGAACCAAAATAAAACAATACGTTGCATTTGAACAGTCTCTAATTTGTGGAGGTGCACCCAATAATCATTACAGGGTTTACTGGACTATTTTAAGCTTGTGTTTCACTTCTCACCACATATCTTATTGATTGATTAGATTTCTTATGGCGATGTTTTATGACAAATTATCATTTCAGCTTCTTATCCAGAATTCCAAGTATAGGCCCATTGAAATAGAGGATTCATTAAAAAATAATGGCATTTACCAATTATAGACCTATAGGCTCTCGAGAGAATATTTTCTCCTCACTAACCAAACACCAGAAAAACACGACAACAGACTGTAAATTCCATCTCTTGACATGCCCTTATGGTCGATTCTAAGCTACAAGTCTTACGAGATATATGAGGAATTCTCTAAAATGCCAAGGTTGAATGGATTATTCAGTAACAACTCAAACTGAATATCTCTATTGTTCAAGGAACGAAAGAACGAGTCAATTTCTGGGAAGAAACGTTTACTTAGATGTGACTAGAACTACACCTCCACCCCGCGCAAGTTGGAGGAATCTCTAAATAGATCCTAAATGTCCATGATGCTGCCATTGAACCTGTCTTACTCCAATATTATAAGAACTCACTAGAAGTCCTCTACATTTCTGAGTGCTCACAAATCTCTAATAAGACAAAAGGACTCCTAATGAACATTTGGCATAAAATAACACACTAACATAACATGACTAGAACTTAATCCCCCAACTAGTTATTGGTATAAACTTAAAAGCTAATAACTTGGGCCATTTCTGAGACTGTGAAATCCTTACACAAGGTATTACGGCTTATGCTAATCTTCATTCCATCGCTCAAGAGAAACCAAGTAATACCAAAATCTCAAAACAAGAACAGGAATTAGCACATCACAATCTACACCTCAGTCAGTGGATTGACAATACAAGTCAATCTACTTGATGAATTTGCCACATGCATTTGAAGATACATCATATTGAATGGAATTTCAAATTTGAAAAGAACATCAACCAATTAAGATAACAATCCTTAAAATGACAGGTCAGAGCCCAGGTTTGATACATTCAACCAGAGTAGTGCAGGACTTAGCCATTTGGTTGATCAAATATAAGGTATTCCCTCATAGGAAGACAGAATCTGGATAATAACAAATAAAAGAATGCAAAATTTTCCATTCATAGATCATCAATACTAATTGCATAACAAATGTACCTCCTCTGCAACTTTCATAATCTGCCACTACCGTAAGTTTACGTGCTATCTGCGAGAACTACAAAGGTAAACTGAAAGAAAATCCCACAGGACAAAATCTGAAGGAGTGCTGCAATGCTTGAATTTCACTGGTTAGAAACTAACTGACAAGCCTCAGTCCAAGCAATAGTCAACTATGTACACCAGAAATGCATCATACCTATTTTAAGGACAACTGCTAGCATATCCACCATACATCTATCTGATAATGACAAACTTGTTTGTACCATGCCTTGCCCAATGTGGCTTCAGATCAATTGGATTAGAAAAGTTATATCCTTCTGAAGCCAGTTTCTCTAGTACCTTCTTAAACGCTCCCAGGCTCATCTTCCGACCTGCTATCCTTGAACCACGCCGTTTTACATTCATAGGCAAGGGATAGGAAGACAAGTTAGTGGTACAGCAAGCTGACTGCCACCCACCACAGCCCCACCTATAACACTGCTGAGCAGCCCCAGTGCATGAGCAGATTGGTATTGGAATTACTGAAATATCCATATTAATACCATTAATGACGACTTCTGCACTTTTCCTGGGAGCTCTTGCCCGTGGAGGAGATGAGGTAGACTCGTCTTTAGGAGCCCTAGTAGCTTTCTTTGCCTTCTTAGGTTTAGGGGACTTCAGCTCTTGCGATTGACCAGCTCCCCTCTTCTTAGCAAGCCCACCTATATTATCCCCTTCTTGGCAAACCTCTTCCACCAGAGGAGCAGTTTCAACTTTCACCAAGTTTGGCTGCTGGTGCATCTGCATAGACTGAGCAGAAGATGTCTCAGGCAAAAACCCAAAACCTGGAAGATAAGGGTGGTTTGCAGATAGCACATTGAGATACTTCTCTCTATAGTCTTTTTGATTAACCCATGAATCCCTCATGTACTCCATGGGCATGGGAGACTCCGAGAGCCCACAAACCCGATGATGATGAAATGCACCACCATTAGTCGACGCCATAACTGAAGGATGGTCAGGTTGGTGGGATTGTTGTTGTTGTTGGTGATTATCATGAATGTTGCGAAAATGAGGGGGCTTTTCATTCATCGAGGACACGAATTGCAGGCCCAAATGGCCCTTCGGAACCGTTGGTGTTGGCTCAAAATAACTCCAATTTCGTATATGCATTCCGCCATTTCCATCCATGGCTGCCTGAAATCAATAGCGAAAGGCTTTAAATTAAAGACCGTATTTTGCAACCCTGGGATGTTAAATTTTGCTTAAAACAGTAGAACACCAATGCCACAGCATGCAAGCATCATTGTTTTCAACCCTGCAAAAACTACAATGGATAATGTTGACCAAATCAAACCGTAGAAAAACCACAAGTAACAACATTACAAAACATCTAATCCATTGCCACAAAACACATAAACGCTCATAATGTCAACACCAAATTAAGCAATGAAAAAGATAACAACACTCACCAAATCAAAAATGCCAGGGTAGAGAAAGAAACACAAGCAATAATACACTAAAAGAAAAACAGTACCATCAGAAAATGAGCGAAAAAATTCAATCGATCGCCAATGAAATGCAAAGAAGTTGATAAAAATTTGAACTTTCATATAAAATCAGCAATGACTAAGTTTTCTAATATAGATCTTAACAAAAATTGAGAATATAATAGTTCAAAACGGAAACTGCGAGAATTTATAAATGTCACTAGAAAAACAAAAGTACTCACCGGAGGTAAAAGTCGGCTGATTAGGGTTTGGGACTGTAATCCCCTCTATGGGAATTTGGAAGGGACGCCATTATTTACCTACTAGAATTTTGTTTTTCTATAAATTATAAATTGCAAAAAAATAAAAATAAAAAGGTTAAAAAAAATAAAATACCATGAGTAAAAAAAGTAATTATAAAGAGAAAATATATACGAATTAAAGTTGCCCACTTCTAACTTTGCGAGATGTTATACCACATGGTGTAATAACAATAATATAATAAAACATTCGCATAATTTTATATAAGCAGAGTCTAGATTATATGATATGTATACAAAGGCATATCAAAATCAAGTGTCAAACTATAGTAGAAGAGTAAATAATATCAACATGAATAAGATACTAGACTACTTACTAACCTTTTCTATCATAATTTTCGAGTTTCATATCTTCCTTCCAGGATCGTGTGATCCTCTTCTAA</genome_strand>
        <mrna_strand>TTATGGACCTTTTTC-CCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTGTTTTTTCAGCAGCCAAAAAGAGAG--AAAGAG-AGATTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGTGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGATAGAGTTGG-ATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGTTTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATTTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAAGGTTTTTCNC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGG......................................................................................................................................................................................................................................................................................GGGGCCGGGACCCCTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413209" ref_strand="+" ref_description="SGN-E413209 [STM-17-D15]">
      <seq>ggggattacagtcccaaaccctaaccaccctacttttacctccggattggaaacgatgatgctcgcatgctgtggcattggtgttctactgaaataagcaatatttagcatcctggggttgcaaaatagtgtctttattgaaatttaaagcccttttgctatcaatttcaggcagccatggatggaaatggcggtatgaatatacggaattggagctattttgagccaacaccaactgttccgaagggccatttgggcctgcaactcatgtcctcgatgaatgaaaagcccccccattttcgcaacattcacgataatcaccaccaacaacaacaaacccaccaacctgaccatcctacagttatggcgtcgactaatggtggtgcatttcatcatcatcgagtttgtgggctctcagagtctcccatgcccatggagtacatgagggattcgtgggttaatcaaaaagactatagagagaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47917" stop="49407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48217" g_stop="48260" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48261" i_stop="48674" i_length="414">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.957" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48675" g_stop="49107" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="483" r_length="439" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E413209" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48217" e_stop="48260"/>
          <exon e_start="48675" e_stop="49107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGATTACAGTCCCAAACCCTAATCAGCCGACTTTTACCTCCGGTGAGTACTTTTGTTTTTCTAGTGACATTTATAAATTCTCGCAGTTTCCGTTTTGAACTATTATATTCTCAATTTTTGTTAAGATCTATATTAGAAAACTTAGTCATTGCTGATTTTATATGAAAGTTCAAATTTTTATCAACTTCTTTGCATTTCATTGGCGATCGATTGAATTTTTTCGCTCATTTTCTGATGGTACTGTTTTTCTTTTAGTGTATTATTGCTTGTGTTTCTTTCTCTACCCTGGCATTTTTGATTTGGTGAGTGTTGTTATCTTTTTCATTGCTTAATTTGGTGTTGACATTATGAGCGTTTATGTGTTTTGTGGCAATGGATTAGATGTTTTGTAATGTTGTTACTTGTGGTTTTTCTACGGTTTGATTTGGTCAACATTATCCATTGTAGTTTTTGCAGGGTTGAAAACAATGATGCTTGCATGCTGTGGCATTGGTGTTCTACTGTTTTAAGCAAAATTTAACATCCCAGGGTTGCAAAATACGGTC--T-TT--AATTTAAAG-CCTTTCGCTATTGATTTCAGGCAGCCATGGATGGAAATGGCGGAATGCATATACGAAATTGGAGTTATTTTGAGCCAACACCAACGGTTCCGAAGGGCCATTTGGGCCTGCAATTCGTGTCCTCGATGAATGAAAAGCCCCCTCATTTTCGCAACATTCATGATAATCACCAACAACAACAACAATCCCACCAACCTGACCATCCTTCAGTTATGGCGTCGACTAATGGTGGTGCATTTCATCATCATCGGGTTTGTGGGCTCTCGGAGTCTCCCATGCCCATGGAGTACATGAGGGATTCATGGGTTAATCAAAAAGACTATAGAGAGAAG</genome_strand>
        <mrna_strand>GGGGATTACAGTCCCAAACCCTAACCACCCTACTTTTACCTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAAACGATGATGCTCGCATGCTGTGGCATTGGTGTTCTACTGAAATAAGCAATATTTAGCATCCTGGGGTTGCAAAATAGTGTCTTTATTGAAATTTAAAGCCCTTTTGCTATCAATTTCAGGCAGCCATGGATGGAAATGGCGGTATGAATATACGGAATTGGAGCTATTTTGAGCCAACACCAACTGTTCCGAAGGGCCATTTGGGCCTGCAACTCATGTCCTCGATGAATGAAAAGCCCCCCCATTTTCGCAACATTCACGATAATCACCACCAACAACAACAAACCCACCAACCTGACCATCCTACAGTTATGGCGTCGACTAATGGTGGTGCATTTCATCATCATCGAGTTTGTGGGCTCTCAGAGTCTCCCATGCCCATGGAGTACATGAGGGATTCGTGGGTTAATCAAAAAGACTATAGAGAGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E466788" ref_strand="+" ref_description="SGN-E466788 [cPRO-26-G11]">
      <seq>cccaaaccctaaccagccgacttttacctccggattggaaacgatgatgcttgcatgctgtggcattggtgttctactgaaataagcaatatttagcatcctggggttgcaaaatactgtctttattgaaatttaaagcccttttgctatcgatttcaggcagccatggatggaaatggcggtatgaatatacggaattggagctattttgagccaacaccaactgttccgaagggccatttgggcctgcaactcatgtcctcgatgaatgaaaagcccccccattttcgcaacattcacgataatcaccaccaccaacaacaaacccaacaacctgaccatcctacagttatggcgtcgactaatggtggtgcatttcatcatcatcgagtttgtgggatctcggagtctcccatgcccatggagtacacgagggattcgtgggttaatcaaaaagactatagagagaagtatctcaatgtgctatctgcaaaccacccttatcttccangttatgggtttttgcctgagacatcttccgctcagtctatgcagatgcaccagcagccgaacttggtgaaaagtgaaactgctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="47929" stop="49534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48229" g_stop="48260" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48261" i_stop="48674" i_length="414">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.957" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48675" g_stop="49234" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="598" r_length="566" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E466788" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48229" e_stop="48260"/>
          <exon e_start="48675" e_stop="49234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAACCCTAATCAGCCGACTTTTACCTCCGGTGAGTACTTTTGTTTTTCTAGTGACATTTATAAATTCTCGCAGTTTCCGTTTTGAACTATTATATTCTCAATTTTTGTTAAGATCTATATTAGAAAACTTAGTCATTGCTGATTTTATATGAAAGTTCAAATTTTTATCAACTTCTTTGCATTTCATTGGCGATCGATTGAATTTTTTCGCTCATTTTCTGATGGTACTGTTTTTCTTTTAGTGTATTATTGCTTGTGTTTCTTTCTCTACCCTGGCATTTTTGATTTGGTGAGTGTTGTTATCTTTTTCATTGCTTAATTTGGTGTTGACATTATGAGCGTTTATGTGTTTTGTGGCAATGGATTAGATGTTTTGTAATGTTGTTACTTGTGGTTTTTCTACGGTTTGATTTGGTCAACATTATCCATTGTAGTTTTTGCAGGGTTGAAAACAATGATGCTTGCATGCTGTGGCATTGGTGTTCTACTGTTTTAAGCAAAATTTAACATCCCAGGGTTGCAAAATACGGTC--T-TT--AATTTAAAG-CCTTTCGCTATTGATTTCAGGCAGCCATGGATGGAAATGGCGGAATGCATATACGAAATTGGAGTTATTTTGAGCCAACACCAACGGTTCCGAAGGGCCATTTGGGCCTGCAATTCGTGTCCTCGATGAATGAAAAGCCCCCTCATTTTCGCAACATTCATGATAATCACCAACAACAACAACAATCCCACCAACCTGACCATCCTTCAGTTATGGCGTCGACTAATGGTGGTGCATTTCATCATCATCGGGTTTGTGGGCTCTCGGAGTCTCCCATGCCCATGGAGTACATGAGGGATTCATGGGTTAATCAAAAAGACTATAGAGAGAAGTATCTCAATGTGCTATCTGCAAACCACCCTTATCTTCCAGGTTTTGGGTTTTTGCCTGAGACATCTTCTGCTCAGTCTATGCAGATGCACCAGCAGCCAAACTTGGTGAAAGTTGAAACTGCTCCTC</genome_strand>
        <mrna_strand>CCCAAACCCTAACCAGCCGACTTTTACCTCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGAAACGATGATGCTTGCATGCTGTGGCATTGGTGTTCTACTGAAATAAGCAATATTTAGCATCCTGGGGTTGCAAAATACTGTCTTTATTGAAATTTAAAGCCCTTTTGCTATCGATTTCAGGCAGCCATGGATGGAAATGGCGGTATGAATATACGGAATTGGAGCTATTTTGAGCCAACACCAACTGTTCCGAAGGGCCATTTGGGCCTGCAACTCATGTCCTCGATGAATGAAAAGCCCCCCCATTTTCGCAACATTCACGATAATCACCACCACCAACAACAAACCCAACAACCTGACCATCCTACAGTTATGGCGTCGACTAATGGTGGTGCATTTCATCATCATCGAGTTTGTGGGATCTCGGAGTCTCCCATGCCCATGGAGTACACGAGGGATTCGTGGGTTAATCAAAAAGACTATAGAGAGAAGTATCTCAATGTGCTATCTGCAAACCACCCTTATCTTCCANGTTATGGGTTTTTGCCTGAGACATCTTCCGCTCAGTCTATGCAGATGCACCAGCAGCCGAACTTGGTGAAAAGTGAAACTGCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205772" ref_strand="+" ref_description="SGN-E205772 [cLEC-20-A1]">
      <seq>aacaatttgttaatttaaatccattagccactcttgctcatcttttaagtatcttgttggattttatttgccctgatttcttaccataaataggttttccttttaggaaaaggttttgaattgactaatccttttcttgtaggaaaaggtttaggactctataaatagatgaatattccttttaacttaatcagcattcacaatgtactcttacaggctttgagagttttggttagagggagaatctgtgggtcacaagcttgatatgttatcacttgtgtgaacctcccatgtattctgagtgaattggttgaggttgattctctctgtattttgtactcttatatttatagtggattgctcatctcctttgtggacgtaggttgattgaccgaaccacgttaaatctttgtgtcttttgatatatttctcgttgtcttcttactcgtggtctttcgaggtttgtattgctagcttccgcgtttacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="51625" stop="52642"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51902" g_stop="52342" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="490" r_length="437" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E205772" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51902" e_stop="52342"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGAAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTGTTCCTTCTAACTTAATCAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGATCACAAGCTTGATACGTTATCACTTGTGTGAACCTCTCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCTCATTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGCTTTGCTACCTTCCGCGTTTACACC</genome_strand>
        <mrna_strand>TTGTTGGATTTTATTTGCCCT-GATTTCTTACCATAAATAGGTTTTCCTTTTAGGAAAAGGTTTTGAATTGACTAATCCTTTTCTTGTAGGAAAAGGTTTAGGACTCTATAAATAGATG-A--ATATTCCTTTTAACTTAATCAGCATTCACAATGTACTCTTACAGGCTTTGAGAGTTTTGGTTAGAGGGAGAATCTGTGGGTCACAAGCTTGATATGTTATCACTTGTGTGAACCTCCCATGTATTCTGAGTGAATTGGTTGAGGTTGATTCTCTCTGTATTTTGTACTCTTATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTTGATTGACCGAACCACGTTAAATCTTTGTGTCTTTTGATATATTTCTCGTTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGTATTGCTAGCTTCCGCGTTTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380017" ref_strand="+" ref_description="SGN-E380017 [TUS-1-D13](-)">
      <seq>catcaagatttacgtggaaaccccttcgatgtgaagagtaaaaaaccacgggtccaaaagctccactataatcaccaagagttacaatattgttctccaaaattggccacaaaacaaagtgtcaaacaacgagcaacaacaaaataagattgctccaaatctagagaattaaaggagcaaaatcaccaatttcgcagctactgttcacgacagcaaaactgaagctgcagaccaccaaatccaactctgtcagttcctaatcaaagattgagatgaagataatatgctgtccaaaaatcagctcaatcggacaagaaacgaagcgggaatcgcaatttgaagttggttgttatggctggatttttgactgcgaatttctctcttttttctctcttttagctgctgaaaaactctctctgaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="52218" stop="53191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52518" g_stop="52944" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E380017" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E380017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52518" e_stop="52944"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAAC-AAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGGATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATACCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGAGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTGACTGCGAAAAACTGCTCTTTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCTGTGTATTTG</genome_strand>
        <mrna_strand>CATCAAGATTTACGTGGAAACCCCTTCGATGTGAAGAGTAAAAAACCACGGGTCCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAAGTGTCAAACAACGAGCAACAACAAAATAAGATTGCTCCAAATCTAGAGAATTAAAGGAGCAAAATCACCAATTTCGCAGCTACTGTTCACGACAGCAAAACTGAAGCTGCAGACCACCAAAT-CCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGGGAATCGCAATTTGAAGTTGGTTGTTATGGCTGGATTTTTGACTGCGAATTTCTCTCTTTTTTCTCTC-TTTTAGCTGCTG-AAAAACTCTCTCTGAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340892" ref_strand="+" ref_description="SGN-E340892 [cTOF-5-E9]">
      <seq>aaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtaccgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagtattgttgtttaattcgcgtgtgatcgttgtttaaataatttgtgtgtgttgagtttgaagatgcaataataataaatatatgtgtatgtactttgtttcattgaatatcaagaaatggaaatgtactagtactattgctattagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69728" stop="67892"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69428" g_stop="69268" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="298" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68192" g_length="426"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="724" r_length="426" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E340892" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69428" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68192"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTA-CGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTATTAGC</genome_strand>
        <mrna_strand>AAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACCGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAAATATATGTGTATGTACTTTGTTTCATTGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTATTAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340222" ref_strand="+" ref_description="SGN-E340222 [cTOF-2-H3]">
      <seq>agagaaaaaaaaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagtattgttgtttaattcgcgtgtgatcgttgtttaaatattttgtgtgtgttgagtttgaagatgcaataataataatatatgtgtatgtcctttgtttcaatgaatatcaagaaatggaaatgtactagtactattgctattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69738" stop="67894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69438" g_stop="69268" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="307" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68194" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="730" r_length="423" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="731" polyA_stop="741"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E340222" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340222" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69438" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTATTA</genome_strand>
        <mrna_strand>AGAGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATATTTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAAT-ATATGTGTATGTCCTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E715583" ref_strand="+" ref_description="SGN-E715583 [FB14CG11]">
      <seq>atcaagagagtgaaaaaaaaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagtattgttgtttaattcgcgtgtgatcgttgtttaaataatttgtgtgtgttgagtttgaagatgcaataataataataatatgtgtatgtactttgtttcaatgaatatcaagaaatggaaatgtactagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69746" stop="67906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69446" g_stop="69268" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="315" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68197" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="736" r_length="421" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E715583" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69446" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTA</genome_strand>
        <mrna_strand>ATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343626" ref_strand="+" ref_description="SGN-E343626 [cTOF-20-L7]">
      <seq>ttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagtattgctgtttaattcgcgtgtgatcgatgttaaaatatctgtgtgtgttgagtttgaagatcaataata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69679" stop="67966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69379" g_stop="69268" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="248" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68266" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="598" r_length="350" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E343626" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69379" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATA</genome_strand>
        <mrna_strand>TTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGCTGTTTAATTCGCGTGTGATCGATGTTAAAAT-ATCTGTGTGTGTTGAGTTTGAAGAT-CAATAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325863" ref_strand="+" ref_description="SGN-E325863 [cTOC-12-J16]">
      <seq>agagaactagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtaatgaaaaataaacgttgagtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69733" stop="68034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69433" g_stop="69268" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="302" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68334" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="586" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E325863" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325863" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69433" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATT</genome_strand>
        <mrna_strand>AGAGAACTAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAATGAAAAATAAACGTTGAGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278047" ref_strand="+" ref_description="SGN-E278047 [cLER-4-E7]">
      <seq>taaaatcaagagagtgaaagaaaaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69750" stop="68036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69450" g_stop="69268" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="183" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="319" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68336" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="601" r_length="282" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E278047" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69450" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTA</genome_strand>
        <mrna_strand>TAAAATCAAGAGAGTGAAAGAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E620837" ref_strand="+" ref_description="SGN-E620837 [71543]">
      <seq>aaaattaagagagtgatcaaagaaagaattattaaaatggaaacaccaagggctttgtcaatccttgttcttagacttttcaccatgttgttgtgcgcagcttcagtgccaatcatgattaccaacagcttccaacttagtggaggcgagaaaaccaaatacagtgacgttaagggctacaggtacgtggtatcagcgggactaattggatttgtgtactcattaattcagctgccatttgcattatattatgccgtgacagggaagagggtttttcatggcaagttccttggccgcttggatttttacgtagacaaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgaactcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttaaggacgaagagtctaatattctttgataggggtcatttagcaactactccacttcttgctggatttgttactatggctgtgctcaccattattacttctttcagtcgcaaatgaagatcgatctacacttttttggagcaacaactattaagtgtagtagtaaaataaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69749" stop="68066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69449" g_stop="69268" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="318" r_length="136" r_score="0.890"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68373" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="563" r_length="245" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E620837" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E620837" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69449" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATC</genome_strand>
        <mrna_strand>AAAATTAAGAGAGTGATCAAAGAAAGAATTATTAAAATGGAAACACCAAGGGCTTTGTCAATCCTTGTTCTTAGACTTTTCACCATGTTGTTGTGCGCAGCTTCAGTGCCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGCGAGAAAACCAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTATCAGCGGGACTAATTGGATTTGTGTACTCATTAATTCAGCTGCCATTTGCATTATATTATGCCGTGACAGGGAAGAGGGTTTTTCATGGCAAGTTCCTTGGCCGCTTGGATTTTTACGTAGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAACTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTAAGGACGAAGAGTCTAATATTCTTTGATAGGGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGTTACTATGGCTGTGCTCACCATTATTACTTCTTTCAGTCGCAAATGAAGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405759" ref_strand="+" ref_description="SGN-E405759 [PPI-1-D21]">
      <seq>gagagagtgatcaaagaaagaattattaaaatggaaacaccaagggctttgtcaatccttgttcttagacttttcactatgttgttgtgcgcagcttcagtgccaatcatgattaccaacagcttccaacttagtggaggcgaaaaaaccaaatacagtgacgttaagggctacaggtacgtggtatcagcgggattaattggatttgtgtactcattgattcaactaccatttgcattgtattatgccgtgacagggaaaagggtttttcatggcaagttccttggccgcttggatttttacgtagacaaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgaactcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttaaggacgaagagtctaatattctttgataggggtcatttagcaactactccacttcttgctggatttgataccatggctgtgctcaccattattacttctttcagtcgcaaatgaagattgatctacacttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69742" stop="68066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69443" g_stop="69268" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="312" r_length="136" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68376" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="554" r_length="242" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E405759" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E405759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69443" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAG</genome_strand>
        <mrna_strand>GAGAGAGTGATCAAAGAAAGAATTATTAAAATGGAAACACCAAGGGCTTTGTCAATCCTTGTTCTTAGACTTTTCACTATGTTGTTGTGCGCAGCTTCAGTGCCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGCGAAAAAACCAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTATCAGCGGGATTAATTGGATTTGTGTACTCATTGATTCAACTACCATTTGCATTGTATTATGCCGTGACAGGGAAAAGGGTTTTTCATGGCAAGTTCCTTGGCCGCTTGGATTTTTACGTAGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAACTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTAAGGACGAAGAGTCTAATATTCTTTGATAGGGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGATACCATGGCTGTGCTCACCATTATTACTTCTTTCAGTCGCAAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420149" ref_strand="+" ref_description="SGN-E420149 [STM-30-F6]">
      <seq>gagagagtgatcaaagaaagaattattaaaatggaaacaccaagggctttgtcaatccttgttcttagacttttcactatgttgttgtgcgcagcttcagtgccaatcatgattaccaacagcttccaacttagtggaggcgaaaaaaccaaatacagtgacgttaagggctacaggtacgtggtatcagcgggattaattggatttgtgtactcattgattcaactaccatttgcattgtattatgccgtgacagggaaaagggtttttcatggcaagttccttggccgcttggatttttacgtagacaaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgaactcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttaaggacgaagagtctaatattctttgataggggtcatttagcaactactccacttcttgctggatttgttaccatggctgtgctcaccattattacttctttcagtcgcaaatgaagattgatctacacttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69742" stop="68066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69443" g_stop="69268" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="312" r_length="136" r_score="0.904"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68376" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="554" r_length="242" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E420149" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E420149" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69443" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAG</genome_strand>
        <mrna_strand>GAGAGAGTGATCAAAGAAAGAATTATTAAAATGGAAACACCAAGGGCTTTGTCAATCCTTGTTCTTAGACTTTTCACTATGTTGTTGTGCGCAGCTTCAGTGCCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGCGAAAAAACCAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTATCAGCGGGATTAATTGGATTTGTGTACTCATTGATTCAACTACCATTTGCATTGTATTATGCCGTGACAGGGAAAAGGGTTTTTCATGGCAAGTTCCTTGGCCGCTTGGATTTTTACGTAGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAACTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTAAGGACGAAGAGTCTAATATTCTTTGATAGGGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGTTACCATGGCTGTGCTCACCATTATTACTTCTTTCAGTCGCAAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338384" ref_strand="+" ref_description="SGN-E338384 [cTOE-15-C21]">
      <seq>aaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69727" stop="68196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69427" g_stop="69268" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="296" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68496" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="418" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E338384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69427" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGA</genome_strand>
        <mrna_strand>AAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359359" ref_strand="+" ref_description="SGN-E359359 [cLHT-31-J10]">
      <seq>agagaactagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69733" stop="68206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69433" g_stop="69268" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="302" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68506" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="414" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E359359" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E359359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69433" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATA</genome_strand>
        <mrna_strand>AGAGAACTAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239883" ref_strand="+" ref_description="SGN-E239883 [cLED-29-L22]">
      <seq>aaaatcaagagagtgaaaaaaaaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69749" stop="68812"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69449" g_stop="69268" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69112" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="231" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E239883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69449" e_stop="69268"/>
          <exon e_start="69160" e_stop="69112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAA</genome_strand>
        <mrna_strand>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E716210" ref_strand="+" ref_description="SGN-E716210 [FB16BF11]">
      <seq>agaagctggtggagaagtctactttaccatgccaagactgcagtcaatcacaattcagtgtttagaggctcttcagttcttgcatggcctcggactcatacattgtgatttgaagcccgaaaacatattggtgaaaagctacagtagatgtgaggtgaaggtaattgatctgggtagcagttgttttgaaacagatcatctttgttcttacgtccaatcaaggtcctaccgtgcaccagaagttattttagggcttccttatgataaaaagatagatatttggtcccttggctgcattttggcagaactttgcacgggcaatgtccttttccagaatgactctcctgccacgttacttgcaagggtacttggtatcacaggtccgattgaccaagagatgcttgtcaaaggacgagacacttacaaatatttcaccaaaaatcacatgctatatgaacgaaatcaagaaacaaacagaatggaatacttaatacccaaaaagacatccttgaggtatcgattgccaatgggagatcaaggtttcgttgattttgtggctcatcttttagaagttaacccaaagacgcggccttctgccttggaggctctaaaacatccatggctatcatatccatatgagccaatatcatcgtgagtcatgtgagatctcttggctctgaaggtgttttctattggtttgatttggattctccagtggtgatatatgaagaaagttgtccaagctgggttgtatttctagctaacacatatagagtgttatgtaaacatcagattttcccttttcttcctcgtctttttttggtcgcagcaaatgcgttctgtttgtacatgatgtctacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80810" stop="85523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81110" g_stop="81152" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81153" i_stop="81233" i_length="81">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81234" g_stop="81512" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="322" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84031" g_stop="84174" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="466" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84828" g_stop="85223" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="862" r_length="396" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E716210" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716210" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81110" e_stop="81152"/>
          <exon e_start="81234" e_stop="81512"/>
          <exon e_start="84031" e_stop="84174"/>
          <exon e_start="84828" e_stop="85223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAGGTTTGTTGGATCGAAATATTCATAGATATTTGATGCTAATGGTATCTCCTGTGATGAATTTCATATATACCTGTTGTGCAGTCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAATGTAAGTTTTTTTTTCCTTTTCACACTCCTCATAATGATTATTATATCTATATATTTATCGTCAACATGATTTTTTATTAGGATATGCTGTCCATTATGCCTCCTGCATTCTGGTAGTTCTTGAGTACCTTTTCCCTTATTTTTATTATATACCCCTTCCCCGTTCTCCTAGATTGATGAATTTGACAAATGCAAAGCTGCAAACATCATTATGTTTTGGAGTTAGCGCCTAGGCCTTTGGTACAGTAAGAGCATAGCGCGTAATGTGTGAGTTAGGTGCACATTAAGTCAAATATTTTGGCAGACTAAAATCTGGAATTTAAGTTGAGACAGATAAAGAGACTGACCTATTACCCACCGAGTTTCAAACATGTGTTGTTGACTTTCGGGGATTACTCAGTTATCAGAAGAATTTATGTCCTTGTAGTTGCTATTGGTATCAAATCTTTCAGAAGCCCTAGTAATTGTTGGCAATTGGCATGTCATCTTAATATGAAATAAGTTTATTAGGAGGACACTGAGACCATTCTTCGATCTGGCTGCTTCGCGCTGTACTCCTATCTTATGTTAGAATCAGAAGAAACCAATATCTGACTGCAAGAAGAATTGTGTTTGGCTTTGATATTTCTAACCAGAGAAAATCTTCATAAGAACTAAGACCTTGTGAGAAGATTTAAAAACTTTATTTCTATTATTATCGTGAAGTAAGTAATAGCTATCTTAAACCATCTCCTCACTAGCTTGACCTTTACGTTGTCAACGGATTTTTTTTTTGGCAAATGTGGTAAAAAATATGCTAATTGGATTGTTAAAGAAATGGACCTTGGGATTAATTCAACCCTCAAAAGTCAAAACTAGCTCAAAGGGGAGTATTGTGCAAGACCATATAAGAAGATCAAATGATCCTATCCCCATCGATGTGGGATATTCAACACCCCCGCACGCCTAGGACTCAACATCTTGAGCATTGGAAAATATAAGATGGGGGGCAATATCAGATGAAACGAGAACTGGGTGGGTCCAACTTTATATTATGTTAAAGAAATGAACTTTGAGCCTAACTCAAGATCAAAAGCTAGCCCAAGAGGTGAAGTGTTTAAATAATTTACATGTCCTAAAAATGAAAGAAAATCAAACACCTAATTACAATAGGAGTAAATTAAGCTACCTACCATAATTACACATATTCTAAATATAGTCACAAAGATTCTAATAGGGAAACTTACATAAATATGCTATAATAAAAAAATATTTACCATTTATAGCAATAACTTTTTTTTTCACTTGATCGATTTAATTCATTTATAATACAATTTTAATACATATTACAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATACATTTATCACACATTTTAATAGACTTATAATACAATGTGACCATTTTTTACCAAACAAACACAATATATTTCAAAAACAATTATAATTCAGATATATTGCATAAATAATTCACTTTTAATACATATTACAGATTTATCACAATATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATCCTTTTAAAATGTATTAATTTATGTAATTTTTCTATTCTAATACTACTCTCAAGCTGGTGCATGCAAATTATAATGTATCAAGCTGGGTTCATGTATAACGTGTTCTGGGATTTGCTAATATGTCTGCAAGCTGATTATTTGACCACATGAACCTTGTACGATGTCTCTTTAGAGTACCTTCTCTCTAACAAAATGACAATCAATCTCGATGTGTTTGATCCTCTCCAAAATACCAGATTTGATGCAATATGAACTGCAGCTTCTTGATCCCTTAAATGTGTAAATGAAGGGAAGAGCAAGAGAGTTCAGAATACTTCACTATCTTGAGAGTGATGAATACTGTATTTCTTATATCTTTTTATTAATAATACTAGGACTTGGTCTATTCTCCAAAAAAAATATCAGAAGTTGGTTAGTCTGTTGAAAATAGAGGTTGGATCCTTCATGAATTTTAAGATTCGGGGGATACAGATACAGAGATTTGGCTAAAAATAATTCAAAATATCTCGAAATAGAGTCGTAAAACCTAAATTTGGAGATATTATGTGGAGAACTTTAGGTGAAGATATTGTTTTAAGTGGAGAATTCTGGAAGGGGGTAAGAAGAGACTTTAAATTTATACATAGATGGTATTCCAGTTTCTTCAATTTCACCTTAGCTTTTGCATTGTTTACAAAAATCATTGAATCTGTTCGGAGTTTCTCCTCTCGATTTTGGTCAAAGTACTCAAAATTGTTTGACCATATCGGGTACGGATCTCACAGCCATGTCGTGTCGACGTGGATGCAGCACCAAAAGTGAAGAGTCCTAGCAACTTCTCTTAAAATTGCTTAAAATGAAATTTGTTATATTTGATGTTCGTATTGAAATATCAACCAACTGTAATTTGATGTCTGTTTTGAATTTTACTAGTGAAGTTCTATAGGAATTTTCCCATTTTTGCAGGTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAAGTAAAGTTTCTTCTCCCTTTCCACTCTTTATTTCAGTTTTTTTCCTTTTGTTTTTGGGGTGATCCCCTGTTTCCCCAGATCTCATTTTTAAGATCAATTTGTCTAGTGACATTAAGATCAATGTTTTCATGTGTCAATGACTCAATCTATTTGGAGGTTATTTAACCATGGATCCAGTTTTTTAAAAAGAAAAAATCAGTTTCAAAAAGGTTATTTAACATGGATCCTTCCTTTACCTTGATTTACCCATGTCCAATGGGTATAACATGGTACGGATGTTGCATAATGATACTTAAAAATTGGCTAAAAGTTAGCAACAAAAAAAAAAACACCATAGACTTGCATCCTTAGAGGATATGTATCTGTTCCCGAGTCCATGTGCATAGTCTCGAGGACAACATATATTATTCTGTGAAAGGTCTTTGGTTTTGACAGTTCTGTATCTACTAAATATTTCCTTAAGTTGCGCTTCAACTGAGATCTAGAATCTGCAACCCAGTAAACATCATTGTTGGGGAGTCCCTTTGGATTCTTTGTTTTATATATGAATTGGTTAATTGTTTGAATGCAACTTTGGCCGGAACAAAATGAAATTGGATGTAATACAATGTCGAGATAATCAATTCCTCTTTCTTTCTTCTTTCTCTTTATAGGAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGT-AACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTA</genome_strand>
        <mrna_strand>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAG.................................................................................TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAAACATC-AGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E687982" ref_strand="+" ref_description="SGN-E687982 [T3_tus_81_O21]">
      <seq>gtcaatcacaattcagtgtttagaggctcttcagttcttgcatggcctcggactcatacattgtgatttgaagcccgaaaacatattggtgaaaagctacagtagatgtgaggtgaaggtaattgatctgggtagcagttgttttgaaacagatcatctttgttcttacgtccaatcaaggtcctaccgtgcaccagaagttattttagggcttccttatgataaaaagatagatatttggtcccttggctgcattttggcagaactttgcacgggcaatgtccttttccagaatgactctcctgccacgttacttgcaagggtacttggtatcacaggtccgattgaccaagagatgcttgtcaaaggacgagacacttacnaatatttcaccaaaaatcacatgctatatgaacgaaatcaagaaacaaacagaatggaatacttaatacccaaaaagacatccttgaggtatcgattgccaatgggagatcaaggtttcgttgattttgtggctcatcttttagaagttaacccaaagacgcggccttctgccttggaggctctaaaacatccatggctatcatatccatatgagccaatatcatcgtgagtcatgtgagatctcttggctctgaaggtgttttctattggtttgatttggattctccagtggtgatatatgaagaaagttgtccaagctgggttgtatttctagctaacacatatagagtgttatgtaacatcaggattttcccttttcttcctcgtctttttttggtcgcagcaaatgcgttctgtttgtacatgatgtctactaattctttttaggtatttagtgatagcttgtgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80933" stop="85559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81233" g_stop="81512" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="280" r_length="280" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84031" g_stop="84174" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="424" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84828" g_stop="85259" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="856" r_length="432" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E687982" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81233" e_stop="81512"/>
          <exon e_start="84031" e_stop="84174"/>
          <exon e_start="84828" e_stop="85259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAATGTAAGTTTTTTTTTCCTTTTCACACTCCTCATAATGATTATTATATCTATATATTTATCGTCAACATGATTTTTTATTAGGATATGCTGTCCATTATGCCTCCTGCATTCTGGTAGTTCTTGAGTACCTTTTCCCTTATTTTTATTATATACCCCTTCCCCGTTCTCCTAGATTGATGAATTTGACAAATGCAAAGCTGCAAACATCATTATGTTTTGGAGTTAGCGCCTAGGCCTTTGGTACAGTAAGAGCATAGCGCGTAATGTGTGAGTTAGGTGCACATTAAGTCAAATATTTTGGCAGACTAAAATCTGGAATTTAAGTTGAGACAGATAAAGAGACTGACCTATTACCCACCGAGTTTCAAACATGTGTTGTTGACTTTCGGGGATTACTCAGTTATCAGAAGAATTTATGTCCTTGTAGTTGCTATTGGTATCAAATCTTTCAGAAGCCCTAGTAATTGTTGGCAATTGGCATGTCATCTTAATATGAAATAAGTTTATTAGGAGGACACTGAGACCATTCTTCGATCTGGCTGCTTCGCGCTGTACTCCTATCTTATGTTAGAATCAGAAGAAACCAATATCTGACTGCAAGAAGAATTGTGTTTGGCTTTGATATTTCTAACCAGAGAAAATCTTCATAAGAACTAAGACCTTGTGAGAAGATTTAAAAACTTTATTTCTATTATTATCGTGAAGTAAGTAATAGCTATCTTAAACCATCTCCTCACTAGCTTGACCTTTACGTTGTCAACGGATTTTTTTTTTGGCAAATGTGGTAAAAAATATGCTAATTGGATTGTTAAAGAAATGGACCTTGGGATTAATTCAACCCTCAAAAGTCAAAACTAGCTCAAAGGGGAGTATTGTGCAAGACCATATAAGAAGATCAAATGATCCTATCCCCATCGATGTGGGATATTCAACACCCCCGCACGCCTAGGACTCAACATCTTGAGCATTGGAAAATATAAGATGGGGGGCAATATCAGATGAAACGAGAACTGGGTGGGTCCAACTTTATATTATGTTAAAGAAATGAACTTTGAGCCTAACTCAAGATCAAAAGCTAGCCCAAGAGGTGAAGTGTTTAAATAATTTACATGTCCTAAAAATGAAAGAAAATCAAACACCTAATTACAATAGGAGTAAATTAAGCTACCTACCATAATTACACATATTCTAAATATAGTCACAAAGATTCTAATAGGGAAACTTACATAAATATGCTATAATAAAAAAATATTTACCATTTATAGCAATAACTTTTTTTTTCACTTGATCGATTTAATTCATTTATAATACAATTTTAATACATATTACAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATACATTTATCACACATTTTAATAGACTTATAATACAATGTGACCATTTTTTACCAAACAAACACAATATATTTCAAAAACAATTATAATTCAGATATATTGCATAAATAATTCACTTTTAATACATATTACAGATTTATCACAATATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATCCTTTTAAAATGTATTAATTTATGTAATTTTTCTATTCTAATACTACTCTCAAGCTGGTGCATGCAAATTATAATGTATCAAGCTGGGTTCATGTATAACGTGTTCTGGGATTTGCTAATATGTCTGCAAGCTGATTATTTGACCACATGAACCTTGTACGATGTCTCTTTAGAGTACCTTCTCTCTAACAAAATGACAATCAATCTCGATGTGTTTGATCCTCTCCAAAATACCAGATTTGATGCAATATGAACTGCAGCTTCTTGATCCCTTAAATGTGTAAATGAAGGGAAGAGCAAGAGAGTTCAGAATACTTCACTATCTTGAGAGTGATGAATACTGTATTTCTTATATCTTTTTATTAATAATACTAGGACTTGGTCTATTCTCCAAAAAAAATATCAGAAGTTGGTTAGTCTGTTGAAAATAGAGGTTGGATCCTTCATGAATTTTAAGATTCGGGGGATACAGATACAGAGATTTGGCTAAAAATAATTCAAAATATCTCGAAATAGAGTCGTAAAACCTAAATTTGGAGATATTATGTGGAGAACTTTAGGTGAAGATATTGTTTTAAGTGGAGAATTCTGGAAGGGGGTAAGAAGAGACTTTAAATTTATACATAGATGGTATTCCAGTTTCTTCAATTTCACCTTAGCTTTTGCATTGTTTACAAAAATCATTGAATCTGTTCGGAGTTTCTCCTCTCGATTTTGGTCAAAGTACTCAAAATTGTTTGACCATATCGGGTACGGATCTCACAGCCATGTCGTGTCGACGTGGATGCAGCACCAAAAGTGAAGAGTCCTAGCAACTTCTCTTAAAATTGCTTAAAATGAAATTTGTTATATTTGATGTTCGTATTGAAATATCAACCAACTGTAATTTGATGTCTGTTTTGAATTTTACTAGTGAAGTTCTATAGGAATTTTCCCATTTTTGCAGGTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAAGTAAAGTTTCTTCTCCCTTTCCACTCTTTATTTCAGTTTTTTTCCTTTTGTTTTTGGGGTGATCCCCTGTTTCCCCAGATCTCATTTTTAAGATCAATTTGTCTAGTGACATTAAGATCAATGTTTTCATGTGTCAATGACTCAATCTATTTGGAGGTTATTTAACCATGGATCCAGTTTTTTAAAAAGAAAAAATCAGTTTCAAAAAGGTTATTTAACATGGATCCTTCCTTTACCTTGATTTACCCATGTCCAATGGGTATAACATGGTACGGATGTTGCATAATGATACTTAAAAATTGGCTAAAAGTTAGCAACAAAAAAAAAAACACCATAGACTTGCATCCTTAGAGGATATGTATCTGTTCCCGAGTCCATGTGCATAGTCTCGAGGACAACATATATTATTCTGTGAAAGGTCTTTGGTTTTGACAGTTCTGTATCTACTAAATATTTCCTTAAGTTGCGCTTCAACTGAGATCTAGAATCTGCAACCCAGTAAACATCATTGTTGGGGAGTCCCTTTGGATTCTTTGTTTTATATATGAATTGGTTAATTGTTTGAATGCAACTTTGGCCGGAACAAAATGAAATTGGATGTAATACAATGTCGAGATAATCAATTCCTCTTTCTTTCTTCTTTCTCTTTATAGGAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</genome_strand>
        <mrna_strand>GTCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACNAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAGGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328717" ref_strand="+" ref_description="SGN-E328717 [cTOC-23-K18]">
      <seq>tcaatcacaattcagtgtttagaggctcttcagttcttgcatggcctcggactcatacattgtgatttgaagcccgaaaacatattggtgaaaagctacagtagatgtgaggtgaaggtaattgatctgggtagcagttgttttgaaacagatcatctttgttcttacgtccaatcaaggtcctaccgtgcaccagaagttattttagggcttccttatgataaaaagatagatatttggtcccttggctgcattttggcagaactttgcacgggcaatgtccttttccagaatgactctcctgccacgttacttgcaagggtacttggtatcacaggtccgattgaccaagagatgcttgtcaaaggacgagacacttacaaatatttcaccaaaaatcacatgctatatgaacgaaatcaagaaacaaacagaatggaatacttaatacccaaaaagacatccttgaggtatcgattgccaatgggagatcaaggtttcgttgattttgtggctcatcttttagaagttaacccaaagacgcggccttctgccttggaggctctaaaacatccatggctatcatatccatatgagccaatatcatcgtgagtcatgtgagatctcttggctctgaaggtgttttctattgggttgatttggattctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80934" stop="85375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81234" g_stop="81512" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84031" g_stop="84174" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="423" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84828" g_stop="85075" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="671" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E328717" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81234" e_stop="81512"/>
          <exon e_start="84031" e_stop="84174"/>
          <exon e_start="84828" e_stop="85075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAATGTAAGTTTTTTTTTCCTTTTCACACTCCTCATAATGATTATTATATCTATATATTTATCGTCAACATGATTTTTTATTAGGATATGCTGTCCATTATGCCTCCTGCATTCTGGTAGTTCTTGAGTACCTTTTCCCTTATTTTTATTATATACCCCTTCCCCGTTCTCCTAGATTGATGAATTTGACAAATGCAAAGCTGCAAACATCATTATGTTTTGGAGTTAGCGCCTAGGCCTTTGGTACAGTAAGAGCATAGCGCGTAATGTGTGAGTTAGGTGCACATTAAGTCAAATATTTTGGCAGACTAAAATCTGGAATTTAAGTTGAGACAGATAAAGAGACTGACCTATTACCCACCGAGTTTCAAACATGTGTTGTTGACTTTCGGGGATTACTCAGTTATCAGAAGAATTTATGTCCTTGTAGTTGCTATTGGTATCAAATCTTTCAGAAGCCCTAGTAATTGTTGGCAATTGGCATGTCATCTTAATATGAAATAAGTTTATTAGGAGGACACTGAGACCATTCTTCGATCTGGCTGCTTCGCGCTGTACTCCTATCTTATGTTAGAATCAGAAGAAACCAATATCTGACTGCAAGAAGAATTGTGTTTGGCTTTGATATTTCTAACCAGAGAAAATCTTCATAAGAACTAAGACCTTGTGAGAAGATTTAAAAACTTTATTTCTATTATTATCGTGAAGTAAGTAATAGCTATCTTAAACCATCTCCTCACTAGCTTGACCTTTACGTTGTCAACGGATTTTTTTTTTGGCAAATGTGGTAAAAAATATGCTAATTGGATTGTTAAAGAAATGGACCTTGGGATTAATTCAACCCTCAAAAGTCAAAACTAGCTCAAAGGGGAGTATTGTGCAAGACCATATAAGAAGATCAAATGATCCTATCCCCATCGATGTGGGATATTCAACACCCCCGCACGCCTAGGACTCAACATCTTGAGCATTGGAAAATATAAGATGGGGGGCAATATCAGATGAAACGAGAACTGGGTGGGTCCAACTTTATATTATGTTAAAGAAATGAACTTTGAGCCTAACTCAAGATCAAAAGCTAGCCCAAGAGGTGAAGTGTTTAAATAATTTACATGTCCTAAAAATGAAAGAAAATCAAACACCTAATTACAATAGGAGTAAATTAAGCTACCTACCATAATTACACATATTCTAAATATAGTCACAAAGATTCTAATAGGGAAACTTACATAAATATGCTATAATAAAAAAATATTTACCATTTATAGCAATAACTTTTTTTTTCACTTGATCGATTTAATTCATTTATAATACAATTTTAATACATATTACAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATACATTTATCACACATTTTAATAGACTTATAATACAATGTGACCATTTTTTACCAAACAAACACAATATATTTCAAAAACAATTATAATTCAGATATATTGCATAAATAATTCACTTTTAATACATATTACAGATTTATCACAATATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATCCTTTTAAAATGTATTAATTTATGTAATTTTTCTATTCTAATACTACTCTCAAGCTGGTGCATGCAAATTATAATGTATCAAGCTGGGTTCATGTATAACGTGTTCTGGGATTTGCTAATATGTCTGCAAGCTGATTATTTGACCACATGAACCTTGTACGATGTCTCTTTAGAGTACCTTCTCTCTAACAAAATGACAATCAATCTCGATGTGTTTGATCCTCTCCAAAATACCAGATTTGATGCAATATGAACTGCAGCTTCTTGATCCCTTAAATGTGTAAATGAAGGGAAGAGCAAGAGAGTTCAGAATACTTCACTATCTTGAGAGTGATGAATACTGTATTTCTTATATCTTTTTATTAATAATACTAGGACTTGGTCTATTCTCCAAAAAAAATATCAGAAGTTGGTTAGTCTGTTGAAAATAGAGGTTGGATCCTTCATGAATTTTAAGATTCGGGGGATACAGATACAGAGATTTGGCTAAAAATAATTCAAAATATCTCGAAATAGAGTCGTAAAACCTAAATTTGGAGATATTATGTGGAGAACTTTAGGTGAAGATATTGTTTTAAGTGGAGAATTCTGGAAGGGGGTAAGAAGAGACTTTAAATTTATACATAGATGGTATTCCAGTTTCTTCAATTTCACCTTAGCTTTTGCATTGTTTACAAAAATCATTGAATCTGTTCGGAGTTTCTCCTCTCGATTTTGGTCAAAGTACTCAAAATTGTTTGACCATATCGGGTACGGATCTCACAGCCATGTCGTGTCGACGTGGATGCAGCACCAAAAGTGAAGAGTCCTAGCAACTTCTCTTAAAATTGCTTAAAATGAAATTTGTTATATTTGATGTTCGTATTGAAATATCAACCAACTGTAATTTGATGTCTGTTTTGAATTTTACTAGTGAAGTTCTATAGGAATTTTCCCATTTTTGCAGGTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAAGTAAAGTTTCTTCTCCCTTTCCACTCTTTATTTCAGTTTTTTTCCTTTTGTTTTTGGGGTGATCCCCTGTTTCCCCAGATCTCATTTTTAAGATCAATTTGTCTAGTGACATTAAGATCAATGTTTTCATGTGTCAATGACTCAATCTATTTGGAGGTTATTTAACCATGGATCCAGTTTTTTAAAAAGAAAAAATCAGTTTCAAAAAGGTTATTTAACATGGATCCTTCCTTTACCTTGATTTACCCATGTCCAATGGGTATAACATGGTACGGATGTTGCATAATGATACTTAAAAATTGGCTAAAAGTTAGCAACAAAAAAAAAAACACCATAGACTTGCATCCTTAGAGGATATGTATCTGTTCCCGAGTCCATGTGCATAGTCTCGAGGACAACATATATTATTCTGTGAAAGGTCTTTGGTTTTGACAGTTCTGTATCTACTAAATATTTCCTTAAGTTGCGCTTCAACTGAGATCTAGAATCTGCAACCCAGTAAACATCATTGTTGGGGAGTCCCTTTGGATTCTTTGTTTTATATATGAATTGGTTAATTGTTTGAATGCAACTTTGGCCGGAACAAAATGAAATTGGATGTAATACAATGTCGAGATAATCAATTCCTCTTTCTTTCTTCTTTCTCTTTATAGGAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCA</genome_strand>
        <mrna_strand>TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGGTTGATTTGGATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313073" ref_strand="+" ref_description="SGN-E313073 [cTOA-14-J19]">
      <seq>tgaggtgaaggtaattgatctgggtagcagttgttttgaaacagatcatctttgttcttacgtccaatcaacgtcctaccgtgcaccacaagttattttagggcttccttatgataaaaagatagatatttggtcccttggctgcattctggcagaactttgcacgggcaatgtccttttccagaatgactctcctgccacgttacttgcacgggtacttggtatcacaggttctattgaccaagagatgcttgtcaaatgacgagacacttactaatatttcaccaaaaatcacatgctatatgaacgaaatctagagacaaacagaatggaatacttaatacccaaaaagacatccttgaggtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="81041" stop="85178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81341" g_stop="81512" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="172" r_length="172" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="84031" g_stop="84174" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="316" r_length="144" r_score="0.958"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84828" g_stop="84878" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="367" r_length="51" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E313073" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81341" e_stop="81512"/>
          <exon e_start="84031" e_stop="84174"/>
          <exon e_start="84828" e_stop="84878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAATGTAAGTTTTTTTTTCCTTTTCACACTCCTCATAATGATTATTATATCTATATATTTATCGTCAACATGATTTTTTATTAGGATATGCTGTCCATTATGCCTCCTGCATTCTGGTAGTTCTTGAGTACCTTTTCCCTTATTTTTATTATATACCCCTTCCCCGTTCTCCTAGATTGATGAATTTGACAAATGCAAAGCTGCAAACATCATTATGTTTTGGAGTTAGCGCCTAGGCCTTTGGTACAGTAAGAGCATAGCGCGTAATGTGTGAGTTAGGTGCACATTAAGTCAAATATTTTGGCAGACTAAAATCTGGAATTTAAGTTGAGACAGATAAAGAGACTGACCTATTACCCACCGAGTTTCAAACATGTGTTGTTGACTTTCGGGGATTACTCAGTTATCAGAAGAATTTATGTCCTTGTAGTTGCTATTGGTATCAAATCTTTCAGAAGCCCTAGTAATTGTTGGCAATTGGCATGTCATCTTAATATGAAATAAGTTTATTAGGAGGACACTGAGACCATTCTTCGATCTGGCTGCTTCGCGCTGTACTCCTATCTTATGTTAGAATCAGAAGAAACCAATATCTGACTGCAAGAAGAATTGTGTTTGGCTTTGATATTTCTAACCAGAGAAAATCTTCATAAGAACTAAGACCTTGTGAGAAGATTTAAAAACTTTATTTCTATTATTATCGTGAAGTAAGTAATAGCTATCTTAAACCATCTCCTCACTAGCTTGACCTTTACGTTGTCAACGGATTTTTTTTTTGGCAAATGTGGTAAAAAATATGCTAATTGGATTGTTAAAGAAATGGACCTTGGGATTAATTCAACCCTCAAAAGTCAAAACTAGCTCAAAGGGGAGTATTGTGCAAGACCATATAAGAAGATCAAATGATCCTATCCCCATCGATGTGGGATATTCAACACCCCCGCACGCCTAGGACTCAACATCTTGAGCATTGGAAAATATAAGATGGGGGGCAATATCAGATGAAACGAGAACTGGGTGGGTCCAACTTTATATTATGTTAAAGAAATGAACTTTGAGCCTAACTCAAGATCAAAAGCTAGCCCAAGAGGTGAAGTGTTTAAATAATTTACATGTCCTAAAAATGAAAGAAAATCAAACACCTAATTACAATAGGAGTAAATTAAGCTACCTACCATAATTACACATATTCTAAATATAGTCACAAAGATTCTAATAGGGAAACTTACATAAATATGCTATAATAAAAAAATATTTACCATTTATAGCAATAACTTTTTTTTTCACTTGATCGATTTAATTCATTTATAATACAATTTTAATACATATTACAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATACATTTATCACACATTTTAATAGACTTATAATACAATGTGACCATTTTTTACCAAACAAACACAATATATTTCAAAAACAATTATAATTCAGATATATTGCATAAATAATTCACTTTTAATACATATTACAGATTTATCACAATATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATCCTTTTAAAATGTATTAATTTATGTAATTTTTCTATTCTAATACTACTCTCAAGCTGGTGCATGCAAATTATAATGTATCAAGCTGGGTTCATGTATAACGTGTTCTGGGATTTGCTAATATGTCTGCAAGCTGATTATTTGACCACATGAACCTTGTACGATGTCTCTTTAGAGTACCTTCTCTCTAACAAAATGACAATCAATCTCGATGTGTTTGATCCTCTCCAAAATACCAGATTTGATGCAATATGAACTGCAGCTTCTTGATCCCTTAAATGTGTAAATGAAGGGAAGAGCAAGAGAGTTCAGAATACTTCACTATCTTGAGAGTGATGAATACTGTATTTCTTATATCTTTTTATTAATAATACTAGGACTTGGTCTATTCTCCAAAAAAAATATCAGAAGTTGGTTAGTCTGTTGAAAATAGAGGTTGGATCCTTCATGAATTTTAAGATTCGGGGGATACAGATACAGAGATTTGGCTAAAAATAATTCAAAATATCTCGAAATAGAGTCGTAAAACCTAAATTTGGAGATATTATGTGGAGAACTTTAGGTGAAGATATTGTTTTAAGTGGAGAATTCTGGAAGGGGGTAAGAAGAGACTTTAAATTTATACATAGATGGTATTCCAGTTTCTTCAATTTCACCTTAGCTTTTGCATTGTTTACAAAAATCATTGAATCTGTTCGGAGTTTCTCCTCTCGATTTTGGTCAAAGTACTCAAAATTGTTTGACCATATCGGGTACGGATCTCACAGCCATGTCGTGTCGACGTGGATGCAGCACCAAAAGTGAAGAGTCCTAGCAACTTCTCTTAAAATTGCTTAAAATGAAATTTGTTATATTTGATGTTCGTATTGAAATATCAACCAACTGTAATTTGATGTCTGTTTTGAATTTTACTAGTGAAGTTCTATAGGAATTTTCCCATTTTTGCAGGTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAAGTAAAGTTTCTTCTCCCTTTCCACTCTTTATTTCAGTTTTTTTCCTTTTGTTTTTGGGGTGATCCCCTGTTTCCCCAGATCTCATTTTTAAGATCAATTTGTCTAGTGACATTAAGATCAATGTTTTCATGTGTCAATGACTCAATCTATTTGGAGGTTATTTAACCATGGATCCAGTTTTTTAAAAAGAAAAAATCAGTTTCAAAAAGGTTATTTAACATGGATCCTTCCTTTACCTTGATTTACCCATGTCCAATGGGTATAACATGGTACGGATGTTGCATAATGATACTTAAAAATTGGCTAAAAGTTAGCAACAAAAAAAAAAACACCATAGACTTGCATCCTTAGAGGATATGTATCTGTTCCCGAGTCCATGTGCATAGTCTCGAGGACAACATATATTATTCTGTGAAAGGTCTTTGGTTTTGACAGTTCTGTATCTACTAAATATTTCCTTAAGTTGCGCTTCAACTGAGATCTAGAATCTGCAACCCAGTAAACATCATTGTTGGGGAGTCCCTTTGGATTCTTTGTTTTATATATGAATTGGTTAATTGTTTGAATGCAACTTTGGCCGGAACAAAATGAAATTGGATGTAATACAATGTCGAGATAATCAATTCCTCTTTCTTTCTTCTTTCTCTTTATAGGAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTAT</genome_strand>
        <mrna_strand>TGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAACGTCCTACCGTGCACCACAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTCTGGCAGAACTTTGCACGGGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCACGGGTACTTGGTATCACAGGTTCTATTGACCAAGAGATGCTTGTCAAATGACGAGACACTTACTAATATTTCACCAAAAATCACATGCTATATGAACGAAATCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380065" ref_strand="+" ref_description="SGN-E380065 [TUS-3-J21](-)">
      <seq>caactccattagttgttggaactaccattggtgctgctgctttgggagctagatacttgataagagcgtggcaaaggttcaaagcagcaccccgagtgaggaggttttatcctgggggctttgatcgggatatgacacggcgagaagcagcattgattctcggagttagggaaagtgctgtcttgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgccggtggcagccattatcttgcttccaagatcaatgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattttaattgaccagtgtgttctttacgctgcgaattcttaacagcttcatgatagtcaacattaaaatggatctttttctggggaaaaggagaacatattctgtttcgagttaagaggtgaatttgtatcaacagctgggtgcattactgccataaatttcatgtaatgcaaccagaaatattctttgcagattgtttacaataaaaagttgtatattcctgttaactatactctatttggaaacattactcgatctgcatgtagtatgtacgcagtgggttcatcccacctactgctcggaatgaactaactacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86732" stop="85102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86432" g_stop="86264" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85870" g_stop="85402" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="638" r_length="469" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E380065" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86432" e_stop="86264"/>
          <exon e_start="85870" e_stop="85402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTACATG</genome_strand>
        <mrna_strand>CAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTGGAAACATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGGAATGAACTAACTACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379400" ref_strand="+" ref_description="SGN-E379400 [TUS-3-J21]">
      <seq>tcttctacttctttatctcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagacttgcgagttttctcatgtcaactccattagttgttggaactaccattggtgctgctgctttgggagctagatacttgataagagcgtggcaaaggttcaaagcagcaccccgagtgaggaggttttatcctgggggctttgatcgggatatgacacggcgagaagcagcattgattctcggagttagggaaagtgctgtcttgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgccggtggcagccattatcttgcttccaagatcaatgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattttaattgaccagtgtgttctttacgctgcgaattcttaacagcttcatgatagtcaacattaaaatggatctttttctggggaaaaggagaacatattctgtttcgagttaagaggtgaatttgtatcaacagctgggtgcattactgccataaatttcatgtaatgcaaccagaaatattctttgcagattgtttacaataaaaagttgtatattcctgttaactatactctattttgaaccattactcgatctgcatgtagtatgtacgcagtgggttcatcccacctactgctcgacttgaactaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87642" stop="85106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87342" g_stop="87252" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86433" g_stop="86264" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="261" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85870" g_stop="85406" g_length="465"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="726" r_length="465" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E379400" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87342" e_stop="87252"/>
          <exon e_start="86433" e_stop="86264"/>
          <exon e_start="85870" e_stop="85406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGAGCTAGAGATTATGTTAATGGATGGTATTTTAGGGAGGGTTTTCTTAGCTGCCACAAGAACCATGGTGCTATTTTAGCCTGAAAAGAGATTGATTTGCTATGCAAGGGTCTGAACTTTAGTTTCTTATTCTTATTAATCGTACTAAACCTCTGTAAGTTCTACTCGGTTGATCTATTATAGTACCAAGTGTTTTCGTGCTCTCTCTTTTCAGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTA</genome_strand>
        <mrna_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611054" ref_strand="+" ref_description="SGN-E611054 [60800]">
      <seq>ggatccccgggccctgcaggtctattttcagcgaattgattgtgaatttgtgtcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagtcttgcgagttttctcatgtcaactccattagttgtgggaactactattggtgctgctgctttgggagctagatacttgataagagcatggcaaacattcaaagcagcacctcgagtgaggatgttttatcctgggggctttgatcgggatatgacaaggcgagaagcagcattgattctcggagttagggaaagtgctgtcctgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgctggtggcagccattatcttgcttccaagatcaacgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattctaattgactagtgttttctttacacttttatttcttaacagcttcatgatagtcagtatacattaaccggatctgtttctggggagaaagagaacataatttgattcgaggaagagatgaatttgtatcaacagctaggtgcattactgtcataaacttcatgtaatgcagtcagaaattttcttttgcagattgctttataataacaagttgtatcttcctgtttaaaaacgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87631" stop="85194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87312" g_stop="87252" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="126" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86433" g_stop="86264" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="296" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85870" g_stop="85482" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="688" r_length="392" r_score="0.864"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E611054" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87312" e_stop="87252"/>
          <exon e_start="86433" e_stop="86264"/>
          <exon e_start="85870" e_stop="85482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGAGCTAGAGATTATGTTAATGGATGGTATTTTAGGGAGGGTTTTCTTAGCTGCCACAAGAACCATGGTGCTATTTTAGCCTGAAAAGAGATTGATTTGCTATGCAAGGGTCTGAACTTTAGTTTCTTATTCTTATTAATCGTACTAAACCTCTGTAAGTTCTACTCGGTTGATCTATTATAGTACCAAGTGTTTTCGTGCTCTCTCTTTTCAGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCA--ACA-TTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTC-TTTGCAGATTG-TTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATT</genome_strand>
        <mrna_strand>CTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGTCTTGCGAGTTTTCTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCATTAGTTGTGGGAACTACTATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCATGGCAAACATTCAAAGCAGCACCTCGAGTGAGGATGTTTTATCCTGGGGGCTTTGATCGGGATATGACAAGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCCTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCTGGTGGCAGCCATTATCTTGCTTCCAAGATCAACGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTCTAATTGACTAGTGTTTTCTTTACACTTTTATTTCTTAACAGCTTCATGATAGTCAGTATACATTAACCGGATCTGTTTCTGGGGAGAAAGAGAACATAATTTGATTCGAG-GAAGAGATGAATTTGTATCAACAGCTAGGTGCATTACTGTCATAAACTTCATGTAATGCAGTCAGAAATTTTCTTTTGCAGATTGCTTTATAATAACAAGTTGTATCTTCCTGTTTA-AAAACGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354044" ref_strand="+" ref_description="SGN-E354044 [cTOS-16-E6]">
      <seq>acggcgagaagcagcattgattctcggagttagggaaagtgctgtcttgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgccggtggcagccattatcttgcttccaagatcaatgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattttaattgaccagtgtgttctttacgctgcgaattcttaacagcttcatgatagtcaacattaaaatggatctttttctggggaaaaggagaacatattctgtttcgagttaagaggtgaatttgtatcaacagctgggtgcattactgccataaatttcatgtaatgcaaccagaaatattctttgcagattgtttacaataaaaagttgtatattcctggttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86596" stop="85189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86296" g_stop="86264" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="85870" g_stop="85483" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="422" r_length="389" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E354044" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354044" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86296" e_stop="86264"/>
          <exon e_start="85870" e_stop="85483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCT-GTTAACTATACTCTAT</genome_strand>
        <mrna_strand>ACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGGTTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E617481" ref_strand="-" ref_description="SGN-E617481 [66331]">
      <seq>cgacgatgaaatttgctattttcagcgaattgattgtgaatttgtgtcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagtcttgcgagttttctcatgtcaactccattagttgtgggaactactattggtgctgctgctttgggagctagatacttgataagagcatggcaaacattcaaagcagcacctcgagtgaggatgttttatcctgggggctttgatcgggatatgacaaggcgagaagcagcattgattctcggagttagggaaagtgctgtcctgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgctggtggcagccattatcttgcttccaagatcaacgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattctaattgactagtgttttctttacacttttatttcttaacagcttcatgatagtcagtatacattaaccggatctgtttctggggagaaagagaacataatttgattcgaggaagagatgaatttgtatcaacagctaggtgcattactgtcataaacttcatgtaatgcagtcagaaattttcttttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87661" stop="85231"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87312" g_stop="87252" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="120" r_length="61" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.961" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86433" g_stop="86264" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="290" r_length="170" r_score="0.953"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="0.98"/>
            <acceptor a_prob="0.923" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85870" g_stop="85531" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="633" r_length="343" r_score="0.885"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E617481" ref_strand="-">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E617481" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87312" e_stop="87252"/>
          <exon e_start="86433" e_stop="86264"/>
          <exon e_start="85870" e_stop="85531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGAGCTAGAGATTATGTTAATGGATGGTATTTTAGGGAGGGTTTTCTTAGCTGCCACAAGAACCATGGTGCTATTTTAGCCTGAAAAGAGATTGATTTGCTATGCAAGGGTCTGAACTTTAGTTTCTTATTCTTATTAATCGTACTAAACCTCTGTAAGTTCTACTCGGTTGATCTATTATAGTACCAAGTGTTTTCGTGCTCTCTCTTTTCAGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCA--ACA-TTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTC-TTTGC</genome_strand>
        <mrna_strand>CTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGTCTTGCGAGTTTTCTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCATTAGTTGTGGGAACTACTATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCATGGCAAACATTCAAAGCAGCACCTCGAGTGAGGATGTTTTATCCTGGGGGCTTTGATCGGGATATGACAAGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCCTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCTGGTGGCAGCCATTATCTTGCTTCCAAGATCAACGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTCTAATTGACTAGTGTTTTCTTTACACTTTTATTTCTTAACAGCTTCATGATAGTCAGTATACATTAACCGGATCTGTTTCTGGGGAGAAAGAGAACATAATTTGATTCGAG-GAAGAGATGAATTTGTATCAACAGCTAGGTGCATTACTGTCATAAACTTCATGTAATGCAGTCAGAAATTTTCTTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208570" ref_strand="+" ref_description="SGN-E208570 [cLEC-39-F22]">
      <seq>tcttctacttctttatctcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagacttgcgagttttctcatgtcaactccattagttgttggaactaccattggtgctgctgctttgggagctagatacttgataagagcgtggcaaaggttcaaagcagcaccccgagtgaggaggttttatcctgggggctttgatcgggatatgacacggcgagaagcagcattgattctcggagttagggaaagtgctgtcttgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgccggtggcagccattatcttgcttccaagatcaatgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattttaattgaccagtgtgttctttacgctgcgaattcttaacagcttcatgatagtcaacattaaaatggatctttttctgggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87642" stop="85335"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87342" g_stop="87252" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86433" g_stop="86264" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="261" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85870" g_stop="85635" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="497" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E208570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87342" e_stop="87252"/>
          <exon e_start="86433" e_stop="86264"/>
          <exon e_start="85870" e_stop="85635"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGAGCTAGAGATTATGTTAATGGATGGTATTTTAGGGAGGGTTTTCTTAGCTGCCACAAGAACCATGGTGCTATTTTAGCCTGAAAAGAGATTGATTTGCTATGCAAGGGTCTGAACTTTAGTTTCTTATTCTTATTAATCGTACTAAACCTCTGTAAGTTCTACTCGGTTGATCTATTATAGTACCAAGTGTTTTCGTGCTCTCTCTTTTCAGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGA</genome_strand>
        <mrna_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719715" ref_strand="+" ref_description="SGN-E719715 [FC08CG04]">
      <seq>cttctacttctttatctcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagacttgcgagttttctcatggtaattaatcttctacttctttcactttccttgagaatttctgttttaggattttatcatttttgctgtgatgaaaataatttgtttttttttaagtttaataagtacttcatggtaagcgcctgtatgcaatgaaatcagctctgtgagcttggctggtggatacagcaatctatgttctttttccaaattttgtctcaaatttgaaattgagctcctgtttagccatatagttttgaggttgcaaacttgaatttgagtttttgaaatttttagttttgtttagacatacatttgacctggaaaaagttgaagttttgtgtgtggatgtgccaaaaacgcaactttttggaatttatttcacgataaaatggatattcaatgataaatttttgaaatttaatcctaaaatctatatggtcaaactctagctatgggaaaaaggtcaaatttagtatttgagacagccaagttcattaatctttgttttctttttcaagtatatagtacttttaattgcataattgaacctcaaagcatattgtgttttgcgcttcaattattgttgataaatgttctgggatagtgtatatatagacctgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87641" stop="86345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87341" g_stop="86645" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E719715" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719715" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87341" e_stop="86645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</genome_strand>
        <mrna_strand>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCAATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361069" ref_strand="+" ref_description="SGN-E361069 [cLPP-13-A6]">
      <seq>acaatagataataaaaattcatccgcgaaaagagggattaaatttgatcaagctcgctctgtttcatctggatcggagatcggaattctccttctagtgttcgccttcaccggcattccgatctccggcagttcacaatgatcaatattccatacttgactgccttgtccacctatttcagctatggcttgctctttgcctttggccaatttcgtgatttcttcagaaaaatattcgattggtggaacgccagtaatcttcagggatatgcacctatctgcttaggactagaagatttctatattcgtcggttgtatcttcgcattcaggactgttttggaaggccaatatgcagtcctcctgatgcttggtttgacgtggtagagcgtgtatccaatgataataacaagacactaaatcggaccacaaaagtttcaaggtgcctgaacttgggatcatataattaccttggttttgcttcttctgatgaatattgtaccccgcgtgttattgagtctttgaaaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88225" stop="89810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88525" g_stop="88787" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88903" g_stop="88968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="329" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89103" g_stop="89191" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="418" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89401" g_stop="89510" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="528" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361069" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88525" e_stop="88787"/>
          <exon e_start="88903" e_stop="88968"/>
          <exon e_start="89103" e_stop="89191"/>
          <exon e_start="89401" e_stop="89510"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATAGATAATAACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAGGTACATGTGTATTTCTATTTCTATAATGTCCGTCTCGTGAATGAATATGCGCGTCTCTGCTTTTGATTCATGCCTTTAATTTTATGGTGATCTCGTGTTTAAAATTTAATGGCAGGGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAGGTAATCATCAACACTTGTTGCAGATTTGTGATGGTTTATGCTTGAATTAGTACAATTGTGTTGATTCCGTAGCTGTCTTATGCTAAATGAGAATTTATATTTGTTCATAATATTTTTGCTTCGTTTTATAATAGGATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAAGTTAGTATACGTCATTTGCTTCGTTTTGATATTTTTCTTTGACTTTCTGAAAAATACTTCCCTCCATTTTGTGGTTCTTTGATTGTTCTGTGTAATACTGGTGATGTATGAATATTTCTCTGTTGTACAATGTAAGATATATGGTTTGTAGTAAGTGTTTTGAAACATTGTTTATAATGCTCAATCCACTCAAAATTCTTTTTATGCAGTCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACAT</genome_strand>
        <mrna_strand>ACAATAGATAATAAAAATTCATCCGCGAAAAGAGGGATTAAATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAATATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG...................................................................................................................GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG......................................................................................................................................GACTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA.................................................................................................................................................................................................................TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E333449" ref_strand="+" ref_description="SGN-E333449 [cTOD-20-I9]">
      <seq>gataataacaattcatccgcgaaaagagggattggatttgatcaagctcgctctgtttcatctggatcggagatcggaattctccttctagtgttcgccttcaccggcattccgatctccggcagttcacaatgatcaacattccatacttgactgccttgtccacctatttcagctatggcttgctctttgcctttggccaatttcgtgatttcttcagaaaaatattcgattggtggaacgccagtaatcttcagggatatgcacctatctgcttaggactagaagatttctatattcgtcggttgtatcttcgcattcaggattgttttggaaggccaatatgcagtcctcctgatgcttggtttgacgtggtagagcgtgtatccaatgataataacaagacactaaatcggaccacaaaagtttcaaggtgcctgaacttgggatcatataattaccttggttttgcttcttctgatgaatattgtaccccgcgtgttattgagtctttgaaaacattttccgcaagcacatgcagtacccgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88231" stop="89843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88531" g_stop="88787" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="257" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88903" g_stop="88968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="323" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89103" g_stop="89191" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="412" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89401" g_stop="89543" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="555" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E333449" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88531" e_stop="88787"/>
          <exon e_start="88903" e_stop="88968"/>
          <exon e_start="89103" e_stop="89191"/>
          <exon e_start="89401" e_stop="89543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAATAACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAGGTACATGTGTATTTCTATTTCTATAATGTCCGTCTCGTGAATGAATATGCGCGTCTCTGCTTTTGATTCATGCCTTTAATTTTATGGTGATCTCGTGTTTAAAATTTAATGGCAGGGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAGGTAATCATCAACACTTGTTGCAGATTTGTGATGGTTTATGCTTGAATTAGTACAATTGTGTTGATTCCGTAGCTGTCTTATGCTAAATGAGAATTTATATTTGTTCATAATATTTTTGCTTCGTTTTATAATAGGATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAAGTTAGTATACGTCATTTGCTTCGTTTTGATATTTTTCTTTGACTTTCTGAAAAATACTTCCCTCCATTTTGTGGTTCTTTGATTGTTCTGTGTAATACTGGTGATGTATGAATATTTCTCTGTTGTACAATGTAAGATATATGGTTTGTAGTAAGTGTTTTGAAACATTGTTTATAATGCTCAATCCACTCAAAATTCTTTTTATGCAGTCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</genome_strand>
        <mrna_strand>GATAATAACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG...................................................................................................................GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG......................................................................................................................................GATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA.................................................................................................................................................................................................................TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329139" ref_strand="+" ref_description="SGN-E329139 [cTOD-2-I17]">
      <seq>acaattcatccgcgaaaagagggattggatttgatcaagctcgctctgtttcatctggatcggagatcggaattctccttctagtgttcgccttcaccggcattccgatctccggcagttcacaatgatcaacattccatacttgactgccttgtccacctatttcagctatggcttgctctttgcctttggccaatttcgtgatttcttcagaaaaatattcgattggtggaacgccagtaatcttcagggatatgcacctatctgcttaggactagaagatttctatattcgtcggttgtatcttcgcattcaggattgttttggaaggccaatatgcagtcctcctgatgcttggtttgacgtggtagagcgtgtatccaatgataataacaagacactaaatcggaccacaaaagtttcaaggtgcctgaacttgggatcatataattaccttggttttgcttcttctgatgaatattgtaccccgcgtgttattgagtctttgaaaacattttccgcaagcacatgcagtacccgtgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88238" stop="89842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88538" g_stop="88787" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88903" g_stop="88968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="316" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89103" g_stop="89191" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="405" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89401" g_stop="89542" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="547" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E329139" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88538" e_stop="88787"/>
          <exon e_start="88903" e_stop="88968"/>
          <exon e_start="89103" e_stop="89191"/>
          <exon e_start="89401" e_stop="89542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAGGTACATGTGTATTTCTATTTCTATAATGTCCGTCTCGTGAATGAATATGCGCGTCTCTGCTTTTGATTCATGCCTTTAATTTTATGGTGATCTCGTGTTTAAAATTTAATGGCAGGGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAGGTAATCATCAACACTTGTTGCAGATTTGTGATGGTTTATGCTTGAATTAGTACAATTGTGTTGATTCCGTAGCTGTCTTATGCTAAATGAGAATTTATATTTGTTCATAATATTTTTGCTTCGTTTTATAATAGGATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAAGTTAGTATACGTCATTTGCTTCGTTTTGATATTTTTCTTTGACTTTCTGAAAAATACTTCCCTCCATTTTGTGGTTCTTTGATTGTTCTGTGTAATACTGGTGATGTATGAATATTTCTCTGTTGTACAATGTAAGATATATGGTTTGTAGTAAGTGTTTTGAAACATTGTTTATAATGCTCAATCCACTCAAAATTCTTTTTATGCAGTCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGAT</genome_strand>
        <mrna_strand>ACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG...................................................................................................................GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG......................................................................................................................................GATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA.................................................................................................................................................................................................................TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E364004" ref_strand="+" ref_description="SGN-E364004 [cLPP-16-O4]">
      <seq>tctgtttcatctggatcggagatcggaattctccttctagtgttcgccttcaccggcattccgatctccggcagttcacaatgatcaatattccatacttgactgccttgtccacctatttcagctatggcttgctctttgcctttggccaatttcgtgatttcttcagaaaaatattcgattggtggaacgccagtaatcttcagggatatgcacctatctgcttaggactagaagatttctatattcgtcggttgtatcttcgcattcaggactgttttggaaggccaatatgcagtcctcctgatgcttggtttgacgtggtagagcgtgtatccaatgataataacaagacactaaatcggaccacaaaagtttcaaggtgcctgaacttgggatcatataattaccttggttttgcttcttctgatgaatattgtaccccgcgtgttattgagtctttgaaaacattttccgcaagcacatgcagtacccgtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88282" stop="89841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88582" g_stop="88787" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88903" g_stop="88968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="272" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89103" g_stop="89191" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="361" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89401" g_stop="89541" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="502" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E364004" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88582" e_stop="88787"/>
          <exon e_start="88903" e_stop="88968"/>
          <exon e_start="89103" e_stop="89191"/>
          <exon e_start="89401" e_stop="89541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAGGTACATGTGTATTTCTATTTCTATAATGTCCGTCTCGTGAATGAATATGCGCGTCTCTGCTTTTGATTCATGCCTTTAATTTTATGGTGATCTCGTGTTTAAAATTTAATGGCAGGGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAGGTAATCATCAACACTTGTTGCAGATTTGTGATGGTTTATGCTTGAATTAGTACAATTGTGTTGATTCCGTAGCTGTCTTATGCTAAATGAGAATTTATATTTGTTCATAATATTTTTGCTTCGTTTTATAATAGGATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAAGTTAGTATACGTCATTTGCTTCGTTTTGATATTTTTCTTTGACTTTCTGAAAAATACTTCCCTCCATTTTGTGGTTCTTTGATTGTTCTGTGTAATACTGGTGATGTATGAATATTTCTCTGTTGTACAATGTAAGATATATGGTTTGTAGTAAGTGTTTTGAAACATTGTTTATAATGCTCAATCCACTCAAAATTCTTTTTATGCAGTCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGA</genome_strand>
        <mrna_strand>TCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAATATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG...................................................................................................................GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG......................................................................................................................................GACTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA.................................................................................................................................................................................................................TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549465" ref_strand="+" ref_description="SGN-E549465 [TUS-70-K17]">
      <seq>accatggaagaagataatcgttgtggtcgagggtatatatagtatggaaggggagctttgccaactcccagagattgttgcgatatgcaagaagtacaaggcatatgtgtatctggatgaggctcatagcattggagcagttggaagaactggaaggggggtctgtgagctcttaggagttgatgctgcagatgtggagattatgatgggaacttttacaaagtcatttggatcatgtgggggttatattgcaggatcaaaggaacttattgaatatctgaagtacacttgcccagctcatctttacgccacatcaatatcacctccagctgcccaacaaataatttcttctatcaatgttatacttggtgaagatggttctagtagaggggctcagaagctagcacagatacgtgaaaatagcaactttttccgctctgaattacagaagatgggctttgaggttctgggggacaatgattctccagtcatgcccattatgctctacaatccagcaaaaatacctgctttttcacgggagtgtctcaaacgaaaagtggcagtagtgacagttgcttttccagctactcctttactactggccagagcacgaatttgcatatctgctgctcactcaagggatgatcttattaaagcgctcgaggttatcagcgaaagtggtgacctagtgggcattaaatacttccctgtcgagcccacaaagagcagctagaagcaaaccgagtcaagctggaaatgagtaagtttcagaattgattnncatcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89780" stop="92620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90080" g_stop="90179" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="90359" i_length="180">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90360" g_stop="90521" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="262" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90522" i_stop="91249" i_length="728">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91250" g_stop="91376" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="389" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91377" i_stop="91490" i_length="114">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91491" g_stop="91657" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="556" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91658" i_stop="91777" i_length="120">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91778" g_stop="91885" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="664" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91886" i_stop="92204" i_length="319">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92205" g_stop="92332" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="791" r_length="127" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E549465" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549465" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90080" e_stop="90179"/>
          <exon e_start="90360" e_stop="90521"/>
          <exon e_start="91250" e_stop="91376"/>
          <exon e_start="91491" e_stop="91657"/>
          <exon e_start="91778" e_stop="91885"/>
          <exon e_start="92205" e_stop="92332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGCATATATAGTATGGAAGGGGAGCTTTGCCAACTGCCAGAGATTGTTGCGATATGCAAGAAGTACAAGGTAATATAGTGTTTGATGTCTCTTCCTGGAACTTCTTCTTTTAATAGACATTGTCAATAATCTTTTAGCTTTCTGCCAAGCTCTTTCTTGTACGAGAGCATCTAGTTTATATGTATCTGCTTTCTGAGGTTCATGTTTGCTGATTTGCATGTGTCTAAATCTACTATCTGATTTTTGCAGGCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGACACTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTACATTGCAGGATCAAAGGTATGATTTTCACAAAAAAAAAATGCTTCTGACTAGCTTTTTCATTGGTTGAGTTAGGCTTTCCATCCTTTAATTTACTGAAGAACCGTTCGTGGATAACTTGGGATTTGTATCAAACCTCATATTTCTCAAGGATATTACCTGGTTGTATCTGCTGAATGCTGCCTCATTCTAATATGTCATTGGGTTTGAAATGAATGCTGCTCCGACCATGGTGACAACAAAATTGTTCAATTGGTAGCCTTAGTTGGTTTGCCTGATTGGTTAGCAACTGTAACTGTCATCACGTTATGTATTGCCATTTTCTAGATACTCCTTTTTACATTTTCTTTTCTTAAGCTAATATGCTCAATCTTTGCATGAAAATCACATTATTACATAATCAGGTCAAACCTTTTCCAAAGAACATAGCAACCCAGTAAACCAGAGTATATTGGCACTTGAATGAAAACCCTATTTCCAGCTGATAATAAAATCAGTCTTGTAGGAAATTATATGTACTGCAGGCTTGCGGGCATTTCATGTCCGATCTTCCAGTACAACTGATTTGATAGACTTTATCTAGACGATTTGTTTCATGGTTTCTGCCAGTAAACCGCCTGAATGATTGATTCTTTTACTTTTTCTTTTCCACTTCAGTAGAATGTGTGTTCACAGAGCTTTTTCTTGTGGTAAATATATGATGTCATCTATAAGAGATGGTTTTGACATTTGATACAACAATATAGGAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAGGTCAGAAATTTCGTCCTGCTAAATGCAACTCTACTTTTCATTATATTCTTAATGCAACTCAACACTGGTATAATGATAGTCTACTGATCATTAGAGCAACTTTGGTTCTTATAGGGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTTGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAAGTACTGTTTTCTACTATTTTTTCAGCTTCATCCAAACTAGAATTAGATCAATCTCTATTAAATGCGTACTCCCAATTTTTCTTCTTGTAATGATATTTATTTCATATCCCACTACTATAGGTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAGGTTAGCTTGTACTTGCATTTGTTTGTCATTTCAGATGATGATCATGTTTAGTTATGTCCTACTGACACTATACGAGCAACAATCCGGCACCAGAGATGCTGCTTATTGAGGAATTAACCTATTGTCATGCCATACAAAATAAAAAAGAAGATTTAAACAGATTAGAGTGGCATATTGAAATCTTGAATGAAGAAGGTCTTCTGTGTTTCAATTAGTATTTCAGTTCATGAAAATCAACACCTACCAGAAAAGAAAGGCAATGTAGCCATTACTAGTGCAAGTGAATAGCTAGTAACTTAGCAACTATTGCTTTTGTCAGGTTATCAGCGAAGTTGGTGATCTAGTGGGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGG-AATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATG</genome_strand>
        <mrna_strand>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGTATATATAGTATGGAAGGGGAGCTTTGCCAACTCCCAGAGATTGTTGCGATATGCAAGAAGTACAAG....................................................................................................................................................................................GCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGATGCTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTATATTGCAGGATCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAG..................................................................................................................GGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTGGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAA........................................................................................................................GTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAG...............................................................................................................................................................................................................................................................................................................................GTTATCAGCGAAAGTGGTGACCTAGTGGGCATTAAATACTTCCCTGTCGAGCCC-ACAAAGAGCAGCTAGAAGCAAACCGAGTCAAGCTGGAAATGAG-TAAGTTTCAGAATTGATTNNCATCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361544" ref_strand="+" ref_description="SGN-E361544 [cLPP-6-D7]">
      <seq>ccatggaagaagataatcgttgtggtcgagggtatatatagtatggaaggggagctttgccaactcccagagattgttgcgatatgcaagaagtacaaggcatatgtgtatctggatgaggctcatagcattggagcagttggaagaactggaaggggggtctgtgagctcttaggagttgatgctgcagatgtggagattatgatgggaacttttacaaagtcatttggatcatgtgggggttatattgcaggatcaaaggaacttattgaatatctgaagtacacttgcccagctcatctttacgccacatcaatatcacctccagctgcccaacaaataatttcttctatcaatgttatacttggtgaagatggttctagtagaggggctcagaagctagcacagatacgtgaaaatagcaactttttccgctctgaattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89781" stop="91847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90081" g_stop="90179" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="90359" i_length="180">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90360" g_stop="90521" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="261" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90522" i_stop="91249" i_length="728">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91250" g_stop="91376" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="388" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91377" i_stop="91490" i_length="114">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91491" g_stop="91547" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="445" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E361544" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90081" e_stop="90179"/>
          <exon e_start="90360" e_stop="90521"/>
          <exon e_start="91250" e_stop="91376"/>
          <exon e_start="91491" e_stop="91547"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATGGAAGAAGATAATCGTTGTGGTCGAGGGCATATATAGTATGGAAGGGGAGCTTTGCCAACTGCCAGAGATTGTTGCGATATGCAAGAAGTACAAGGTAATATAGTGTTTGATGTCTCTTCCTGGAACTTCTTCTTTTAATAGACATTGTCAATAATCTTTTAGCTTTCTGCCAAGCTCTTTCTTGTACGAGAGCATCTAGTTTATATGTATCTGCTTTCTGAGGTTCATGTTTGCTGATTTGCATGTGTCTAAATCTACTATCTGATTTTTGCAGGCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGACACTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTACATTGCAGGATCAAAGGTATGATTTTCACAAAAAAAAAATGCTTCTGACTAGCTTTTTCATTGGTTGAGTTAGGCTTTCCATCCTTTAATTTACTGAAGAACCGTTCGTGGATAACTTGGGATTTGTATCAAACCTCATATTTCTCAAGGATATTACCTGGTTGTATCTGCTGAATGCTGCCTCATTCTAATATGTCATTGGGTTTGAAATGAATGCTGCTCCGACCATGGTGACAACAAAATTGTTCAATTGGTAGCCTTAGTTGGTTTGCCTGATTGGTTAGCAACTGTAACTGTCATCACGTTATGTATTGCCATTTTCTAGATACTCCTTTTTACATTTTCTTTTCTTAAGCTAATATGCTCAATCTTTGCATGAAAATCACATTATTACATAATCAGGTCAAACCTTTTCCAAAGAACATAGCAACCCAGTAAACCAGAGTATATTGGCACTTGAATGAAAACCCTATTTCCAGCTGATAATAAAATCAGTCTTGTAGGAAATTATATGTACTGCAGGCTTGCGGGCATTTCATGTCCGATCTTCCAGTACAACTGATTTGATAGACTTTATCTAGACGATTTGTTTCATGGTTTCTGCCAGTAAACCGCCTGAATGATTGATTCTTTTACTTTTTCTTTTCCACTTCAGTAGAATGTGTGTTCACAGAGCTTTTTCTTGTGGTAAATATATGATGTCATCTATAAGAGATGGTTTTGACATTTGATACAACAATATAGGAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAGGTCAGAAATTTCGTCCTGCTAAATGCAACTCTACTTTTCATTATATTCTTAATGCAACTCAACACTGGTATAATGATAGTCTACTGATCATTAGAGCAACTTTGGTTCTTATAGGGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTAC</genome_strand>
        <mrna_strand>CCATGGAAGAAGATAATCGTTGTGGTCGAGGGTATATATAGTATGGAAGGGGAGCTTTGCCAACTCCCAGAGATTGTTGCGATATGCAAGAAGTACAAG....................................................................................................................................................................................GCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGATGCTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTATATTGCAGGATCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAG..................................................................................................................GGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E547008" ref_strand="+" ref_description="SGN-E547008 [TUS-70-K17](-)">
      <seq>ggcattaaatacttccctgtcgagcccaacaaagagcagctagaagcaaaccgagtcaagctggaatgagttaagtttcagaattgattcaatcaagcatgatacgtctttaggatgagaagttttgacactttttaacttttgtatacaaagtgttgtcacgtactacatgggatagtcttatctttctcttatgcttcacgaaagggatgctgcaaggtgccaagtcgtgaatattttgttctctcaaaccaaaaatagagaaatgccatggaaaaagcaaatcttcaatattgactcacaaattgctgaaggaaactaaagagtagtagtgaaaagccaatagcaacactgtaacaagaagggcaagaagcaaacttgcctctctgtattcactgtcaagatgagaagttcaaaaacatgaacgtcaatccgaaagatctttgaatcatataattcagcttgctttgtctattgtttttgtcttttatgttatttgctagcattagtttctgaaacttgttaaactgttaaagaatggactttcagctaatatgaaggtttgcaatgcttgtatacccagttttggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91932" stop="93121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92232" g_stop="92822" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="629"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E547008" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92232" e_stop="92822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAACTTTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAAGTGCCAAGTCGTGAATATTTTGTTCTCTCAAAACAAAAATAGAGAAATGACATGGAAAAAGTAAATCTTCAATATTGACTCACAAATTGCTGGAGGAAACTAAAGAGTAGTAGTGAAAAGACAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTG-CT-TTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACGGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACACAGTTTTAGTAG</genome_strand>
        <mrna_strand>GGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACCGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAAC-TTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAGGTGCCAAGTCGTGAATATTTTGTTCTCTCAAACCAAAAATAGAGAAATGCCATGGAAAAAGCAAATCTTCAATATTGACTCACAAATTGCTGAAGGAAACTAAAGAGTAGTAGTGAAAAGCCAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTGTCTATTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACTGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACCCAGTTTTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E446543" ref_strand="+" ref_description="SGN-E446543 [cSTA-21-F20]">
      <seq>caaaatttcaagcattgctgcaaagtatatggggaggcctatttcgcaacttccaccagtgcaacctgttcatttgtcctcacttaacttaatgtccatgcctaattttggactaactggtccttcacttgatcttgatcttctccctggaagttcgacgagtacttttccaaatttaccatgtcctacattgaacatatcagacatggataagtcccttatggctgatattgctggaaatgccatggaggaactgattaggcttttacaaactaacgaacctttgtggacaaagtccacagctgatggcagagatgtacttgacatcgataactatgaccagatttttccaaaggctaacagttcgttgaaaaatccaaatgttcgtgttgaggcttccaggcaatcaggtgttgtgatcatgaatggtttggccttagtcgacatgttcatggatgtgaataaatgggtggaattctttcctacaattgtttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="101778" stop="102964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102078" g_stop="102537" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="102538" i_stop="102628" i_length="91">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102629" g_stop="102664" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="496" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E446543" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E446543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102078" e_stop="102537"/>
          <exon e_start="102629" e_stop="102664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATTTCAAGCATTGCTGCAAAGTATATGGGGAGGCCTATTTCGCAACTTCCACCAGTGCAACCTGTTCATTTGTCTTCACTTAACTTAATGTCCATGCCTAATTTTGGACTAACTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGAAGTTCGACGAGTACTTATCCAAATTTACCATGTCCTACATTCAACATATCAGACATGGATAAGTCCCTTATGGCTGATATTGCTGGTAATGCCATGGAGGAATTGATTAGGCTTTTACAAACTAACGAACCTTTGTGGACAAAGTCCACAACTGATGGCAGAGATGTACTTGACATCGATAAATACGGCCAGATTTTTCCAAAGGCTAACAGTTCGTTGAAAAATCCAAATGTTCGTGTTGAGGCTTCCAGGCAATCAGGTGTTGTGATAATGAATGGTTTGGCCTTAGTCGACATGTTCATGGATGTGGTTAGTCTATTTTCTCGTTCACATTTCTTTTGTATAGCTTTTAAGTAACCTTAATAGTGAAAATTTTGATCTGTTTCTCATAATTTTGTAGAACAAATGGGTGGAATTCTTTCCTACAATTGTTTCA</genome_strand>
        <mrna_strand>CAAAATTTCAAGCATTGCTGCAAAGTATATGGGGAGGCCTATTTCGCAACTTCCACCAGTGCAACCTGTTCATTTGTCCTCACTTAACTTAATGTCCATGCCTAATTTTGGACTAACTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGAAGTTCGACGAGTACTTTTCCAAATTTACCATGTCCTACATTGAACATATCAGACATGGATAAGTCCCTTATGGCTGATATTGCTGGAAATGCCATGGAGGAACTGATTAGGCTTTTACAAACTAACGAACCTTTGTGGACAAAGTCCACAGCTGATGGCAGAGATGTACTTGACATCGATAACTATGACCAGATTTTTCCAAAGGCTAACAGTTCGTTGAAAAATCCAAATGTTCGTGTTGAGGCTTCCAGGCAATCAGGTGTTGTGATCATGAATGGTTTGGCCTTAGTCGACATGTTCATGGATGTG...........................................................................................AATAAATGGGTGGAATTCTTTCCTACAATTGTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738513" ref_strand="+" ref_description="SGN-E738513 [LC13DG04]">
      <seq>ccttttgtgatctacacattagttttctctctctaggaatcactttctctctctaatctgatatagtagtagttgtcttctctctccgtctcatttgcgttttgtaggttacggcggtggttggttggagaagggcggaaattggtgtaccggcggtgattttgagttgctatcatggtgcggaagaggagaactgatgttcctggtggtgctgagagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagtatcaacgagggggaggacaaccccagcgccgtggtggtatagggggccgtggggcaccttctggtggctcttctaggccaccagttcccgagctgcaccaagcaactgagactccacatcagcccgtaccatatggaagaccagcagatacatactcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaaattgctgtgcaaccagtaacaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113122" stop="116085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113422" g_stop="113587" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115205" g_stop="115785" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="747" r_length="581" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E738513" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738513" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113422" e_stop="113587"/>
          <exon e_start="115205" e_stop="115785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAGGTATACATTTCTGTGATTTTGATGTATCTCTGTTAGTTTAGCATTTTAGATCTAACTGGTTCAGCGTTTTCAATTGTTGTTTATGTTCAATTTAGGGTTTTTGCTTTACGCCGATTCTCCGATTGTTCTACTTTTAGCTGAGTTCACTTGATGATCAGATCTAACTGACTGTTGATTTGGTTATGATTTTTTTTCTCATTTATGCTGTTTTCTTTTTGCCTTGTTAAACTTTTTATGTGCCTTTTCCTAGTCCTTGTTAGCTCTTTTTGTGCTGTTGCGAAGATATGATGGGTAATTTTGAATGCTGTGTGTTTGAGGGGTTTATCTCTTGTATGTTCTGTTTTTGGTGTGTTAGTTGTATAGACTACTGTTAAGAAGTGAAATGTGGATTTCTTTCCTATTTTATCTTCTGGGCTCTATTTGAGTTCATTTTAATTTGATTGACCTGTTTTGACTTGGCATTGAGTTTAGGGAAGTGAATAAACTATTGACTGTTGTGGTCTTTGAAATGAAAGATAAGTAGAATGTTGAATATGACGCTCTAAGTTGTGTTGCTGCTGTTATGTGGAGTGTGAGGTTGTCAGAACATGTTCTTTATATTTTCCTGTATATTTTCGATTAGTAAAGTTTAGTTCTTGTTAAATTCTCACCTATATTTTTAACCTTATTTGTCTTGTTATCTATGTGTCACATGGATTTATTATTCTGTTCTATTTACATGTCCGGAGCAATCTGTTCGAGCATGAATTTGTCTTTTGATTTTGGGAAGGGCAAAATGCTTCGATAAATGATCTCTGAAGCAGAAATTAAACTAATAACACCGTGTCCGTTTTTATCACAAAACCCAGTTGGAAGCATTCTTGTCATCTTGTTTGAAAGGTGTATCTTTTATGTTTTTATTCTCTCCGGGATTGAGAAATGGAAATGGTATGAGCTTTTACTGTTTTGTTGTCCTATAGTACATTCTTCTTTTGAGCATCCACGGGGTGACCTAGTGGTCAATGGTGGGTCAAAGAACCATGAGGCTTCTGGTTCAAATCCCAGCAGCAGAGGCAAAAACACTAAGAGATTTCTTCCCATATGTCCAAACCTTGGTGGACCGAGTTATCCGGTACCTGTGTTGGTAGGAGGTAGTAAGTGCCTTCAGAATTAGTATAGGTGTGCATAAGTTGGCCCGGACAATCACTACTATAATGAAAAAAACGTTCTCTTTGATTGCCAAATGTTATGCCTTCAAAGCTTGGATATGTTCGTCTGTAATGAAAAAAACATTCTCTTTGATTGCCAAATATTATGCCTTCAAAGCTTGGATGTGTTCTTCTGTGAATTGTAACTGAATCTCGTTAATCCTATTATTTAGGACTATGTTTGCATGAGATCATACTGTGGATCTTTTGTTTCTGTTTGCTATAGAAGTTGCTTGAACACGTATTGATAGAGATTTTGTTTGTGATTTATTGGGGGGGGGGGGGGTTTGGAGCCTATCAGTTGTAATCAGGGCTCATAGATTGATATCAGATATGTTTTTTGATGAGTTCATCAATTGTGTTTTTAAGGACAATGTGGCTGATCTCTACTTGAATATTTTTTAAGTGACAATTGTCTTTTTTTTTATAGTTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAAT</genome_strand>
        <mrna_strand>CCTTTTGTGATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGATACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGTAACAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740127" ref_strand="+" ref_description="SGN-E740127 [LC20AH03]">
      <seq>cttatctacacattagttttctctctctaggaatcactttctctctctaatctgatatagtagtagttgtcttctctctccgtctcatttgcgttttgtaggttacggcggtggttggttggagaagggcggaaattggtgtaccggcggtgattttgagttgctatcatggtgcggaagaggagaactgatgttcctggtggtgctgagagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagtatcaacgagggggaggacaaccccagcgccgtggtggtatagggggccgtggggcaccttctggtggctcttctaggccaccagttcccgagctgcaccaagcaactgagactccacatcagcccgtaccatatggaagaccagcagaaacatactcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaaattgctgtgcaaccagaagcaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggaactagatgcattgttaaagccaatcacttctttgccgagttacctgacaaagacttgcaccattatgatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113129" stop="116159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113428" g_stop="113587" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115205" g_stop="115857" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="813" r_length="653" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E740127" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113428" e_stop="113587"/>
          <exon e_start="115205" e_stop="115857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAGGTATACATTTCTGTGATTTTGATGTATCTCTGTTAGTTTAGCATTTTAGATCTAACTGGTTCAGCGTTTTCAATTGTTGTTTATGTTCAATTTAGGGTTTTTGCTTTACGCCGATTCTCCGATTGTTCTACTTTTAGCTGAGTTCACTTGATGATCAGATCTAACTGACTGTTGATTTGGTTATGATTTTTTTTCTCATTTATGCTGTTTTCTTTTTGCCTTGTTAAACTTTTTATGTGCCTTTTCCTAGTCCTTGTTAGCTCTTTTTGTGCTGTTGCGAAGATATGATGGGTAATTTTGAATGCTGTGTGTTTGAGGGGTTTATCTCTTGTATGTTCTGTTTTTGGTGTGTTAGTTGTATAGACTACTGTTAAGAAGTGAAATGTGGATTTCTTTCCTATTTTATCTTCTGGGCTCTATTTGAGTTCATTTTAATTTGATTGACCTGTTTTGACTTGGCATTGAGTTTAGGGAAGTGAATAAACTATTGACTGTTGTGGTCTTTGAAATGAAAGATAAGTAGAATGTTGAATATGACGCTCTAAGTTGTGTTGCTGCTGTTATGTGGAGTGTGAGGTTGTCAGAACATGTTCTTTATATTTTCCTGTATATTTTCGATTAGTAAAGTTTAGTTCTTGTTAAATTCTCACCTATATTTTTAACCTTATTTGTCTTGTTATCTATGTGTCACATGGATTTATTATTCTGTTCTATTTACATGTCCGGAGCAATCTGTTCGAGCATGAATTTGTCTTTTGATTTTGGGAAGGGCAAAATGCTTCGATAAATGATCTCTGAAGCAGAAATTAAACTAATAACACCGTGTCCGTTTTTATCACAAAACCCAGTTGGAAGCATTCTTGTCATCTTGTTTGAAAGGTGTATCTTTTATGTTTTTATTCTCTCCGGGATTGAGAAATGGAAATGGTATGAGCTTTTACTGTTTTGTTGTCCTATAGTACATTCTTCTTTTGAGCATCCACGGGGTGACCTAGTGGTCAATGGTGGGTCAAAGAACCATGAGGCTTCTGGTTCAAATCCCAGCAGCAGAGGCAAAAACACTAAGAGATTTCTTCCCATATGTCCAAACCTTGGTGGACCGAGTTATCCGGTACCTGTGTTGGTAGGAGGTAGTAAGTGCCTTCAGAATTAGTATAGGTGTGCATAAGTTGGCCCGGACAATCACTACTATAATGAAAAAAACGTTCTCTTTGATTGCCAAATGTTATGCCTTCAAAGCTTGGATATGTTCGTCTGTAATGAAAAAAACATTCTCTTTGATTGCCAAATATTATGCCTTCAAAGCTTGGATGTGTTCTTCTGTGAATTGTAACTGAATCTCGTTAATCCTATTATTTAGGACTATGTTTGCATGAGATCATACTGTGGATCTTTTGTTTCTGTTTGCTATAGAAGTTGCTTGAACACGTATTGATAGAGATTTTGTTTGTGATTTATTGGGGGGGGGGGGGGTTTGGAGCCTATCAGTTGTAATCAGGGCTCATAGATTGATATCAGATATGTTTTTTGATGAGTTCATCAATTGTGTTTTTAAGGACAATGTGGCTGATCTCTACTTGAATATTTTTTAAGTGACAATTGTCTTTTTTTTTATAGTTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT</genome_strand>
        <mrna_strand>CTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAAGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735879" ref_strand="+" ref_description="SGN-E735879 [LC03CA09]">
      <seq>cgatagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagttccagcaaattgctgtgcaaccagaagcaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggaactagatgcattgttaaggccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattacaccagaggtagcttcccgaggtgtcaaccgcgctgtcatggagcagcttgtaaagctttacagagaatcccatcttgggaagaggcttccagcctatgatggaagaaaaagtttgtacaccgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacccggtggtgctaggcgagaaagggagtttaaagttgtgatcaagctggctgctcgtgctgatcttcatcatttagggatgttcttacaagggaggcaggcggatgcaccccaggaggccctacaggttcttgatattgttctgcgtgagttgccaacaagtaggtattgtcccgtgggccgatcattctattcccctgatttangacgaagacaaccactangtgaaggtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114952" stop="116879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115251" g_stop="115461" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115462" i_stop="115677" i_length="216">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115678" g_stop="115857" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="391" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115961" g_stop="116169" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="600" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116250" g_stop="116399" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="750" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116400" i_stop="116507" i_length="108">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116508" g_stop="116579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="751" r_stop="822" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E735879" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>822</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115251" e_stop="115461"/>
          <exon e_start="115678" e_stop="115857"/>
          <exon e_start="115961" e_stop="116169"/>
          <exon e_start="116250" e_stop="116399"/>
          <exon e_start="116508" e_stop="116579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGTATGCTCCTATGGATTTGAGAAGTCAAGAAACATTTTTAGCAGTATTTAATGTATGCCTTTTCTAATTTGTGTTGGCAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAGGTATGGTTCTTGACTGGCTTTAATTTCTGTTTTGTCAAAAGCATTGATTACTTCTAAATTGTTGAGTTATGTATTTATCTTTTCCCTTTAATTCATTGTTACCTGCAGGTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</genome_strand>
        <mrna_strand>CGATAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAG........................................................................................................................................................................................................................CAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG................................................................................GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAG............................................................................................................GTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTANGACGAAGACAACCACTANGTGAAGGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E738593" ref_strand="+" ref_description="SGN-E738593 [LC14BA04]">
      <seq>agagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagttccagcaaattgctgtgcaaccagaagcaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggaactagatgcattgttaaggccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattacaccagaggtagcttcccgaggtgtcaaccgcgctgtcatggagcagcttgtaaagctttacagagaatcccatcttgggaagaggcttccagcctatgatggaagaaaaagtttgtacaccgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacccggtggtgctaggcgagaaagggagtttaaagttgtgatcaagctggctgctcgtgctgatcttcatcatttagggatgttcttacaagggaggcaggcggatgcaccccaggaggccctacaggttcttgatattgttctgcgtgagttgccaacaagtaggtattgtcccgtgggccgatcattctattcccctgatttaggacgaagacaaccactaggtgaaggtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114953" stop="116879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115253" g_stop="115461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115462" i_stop="115677" i_length="216">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115678" g_stop="115857" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="389" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115961" g_stop="116169" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="598" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116250" g_stop="116399" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="748" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116400" i_stop="116507" i_length="108">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116508" g_stop="116579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="820" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E738593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115253" e_stop="115461"/>
          <exon e_start="115678" e_stop="115857"/>
          <exon e_start="115961" e_stop="116169"/>
          <exon e_start="116250" e_stop="116399"/>
          <exon e_start="116508" e_stop="116579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGTATGCTCCTATGGATTTGAGAAGTCAAGAAACATTTTTAGCAGTATTTAATGTATGCCTTTTCTAATTTGTGTTGGCAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAGGTATGGTTCTTGACTGGCTTTAATTTCTGTTTTGTCAAAAGCATTGATTACTTCTAAATTGTTGAGTTATGTATTTATCTTTTCCCTTTAATTCATTGTTACCTGCAGGTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</genome_strand>
        <mrna_strand>AGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAG........................................................................................................................................................................................................................CAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG................................................................................GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAG............................................................................................................GTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584471" ref_strand="+" ref_description="SGN-E584471 [10298]">
      <seq>cgtactatcacagggcagaggacccagcagtatcacgagggggaggagactccagcgtcgtggtggtatagggggccgtggggcaccttctggtggctcttctaggccaccagttcccgagctgcaccaagcaactgagactccacatcagcccgtaccatatggaagaccagcagaaacatactcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaacttgcatgtgcaaccagaagcaggtgcaccccaagcaataccacctgtatctagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggcactagatgcattgttaaagccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattaccccagaagtagcttcccgaggtgtcaaccgcgctgtcatggagcagctggtaaagctttacagagagtcccatcttgggaagaggcttccagcctatgacggaagaaaaagtctgtacaccgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacctggtggtgctaggcgagaaagggagtttaaagttgtgatcaaactggctgctcgtgctgatcttcatcacttagggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115185" stop="116617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115433" g_stop="115857" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="422" r_length="422" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115961" g_stop="116169" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="631" r_length="209" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116250" g_stop="116317" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="699" r_length="68" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E584471" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115433" e_stop="115857"/>
          <exon e_start="115961" e_stop="116169"/>
          <exon e_start="116250" e_stop="116317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGC-TGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGTATGCTCCTATGGATTTGAGAAGTCAAGAAACATTTTTAGCAGTATTTAATGTATGCCTTTTCTAATTTGTGTTGGCAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGT</genome_strand>
        <mrna_strand>CGTACTATC-ACAGGGCAGAGG-ACCCAGCAGTATC-ACGAGGGGGAGGA-GACTCCAGCGTCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAACTTGCATGTGCAACCAGAAGCAGGTGCACCCCAAGCAATACCACCTGTATCTAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGCACTAGATGCATTGTTAAAGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACCCCAGAAGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTGGTAAAGCTTTACAGAGAGTCCCATCTTGGGAAGAGGCTTCCAGCCTATGACGGAAGAAAAAGTCTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCTGGTGGTGCTAG................................................................................GCGAGAAAGGGAGTTTAAAGTTGTGATCAAACTGGCTGCTCGTGCTGATCTTCATCACTTAGGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E568647" ref_strand="+" ref_description="SGN-E568647 [12963]">
      <seq>ctcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaacttgctgtgcaaccagaaggaggtgcaccccaagcaataccacctgtatctagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggcactagatgcattgttaaggccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattaccccagaagtagcttcccgaggtgtcaaccgcgctgtcatggagcagctggtaaagctttacagagagtcccatcttgggaagaggcttccagcctatgacggaagaaaaagtctgtacactgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacctggtggtgctaggcgagaaagggagtttaaagttgtgatcaaactggctgctcgtgctgatcttcatcacttagggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115320" stop="116616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115620" g_stop="115857" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="238" r_length="238" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115961" g_stop="116169" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="447" r_length="209" r_score="0.962"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80">
            <donor d_prob="0.909" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="116250" g_stop="116316" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="514" r_length="67" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E568647" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E568647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115620" e_stop="115857"/>
          <exon e_start="115961" e_stop="116169"/>
          <exon e_start="116250" e_stop="116316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGTATGCTCCTATGGATTTGAGAAGTCAAGAAACATTTTTAGCAGTATTTAATGTATGCCTTTTCTAATTTGTGTTGGCAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATG</genome_strand>
        <mrna_strand>CTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAACTTGCTGTGCAACCAGAAGGAGGTGCACCCCAAGCAATACCACCTGTATCTAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGCACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACCCCAGAAGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTGGTAAAGCTTTACAGAGAGTCCCATCTTGGGAAGAGGCTTCCAGCCTATGACGGAAGAAAAAGTCTGTACACTGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCTGGTGGTGCTAG................................................................................GCGAGAAAGGGAGTTTAAAGTTGTGATCAAACTGGCTGCTCGTGCTGATCTTCATCACTTAGGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444563" ref_strand="+" ref_description="SGN-E444563 [cSTA-43-K24]">
      <seq>cctgtatctagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggcactagatgcattgttaaagccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattaccccagaagtagcttcccgaggtgtcaaccgcgctgtcatggagcagctggtaaagctttacagagagtcccatcttgggaagaggcttccagcctatgacggaagaaaaagtctgtacaccgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="115432" stop="116457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115732" g_stop="115857" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115961" g_stop="116157" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="323" r_length="197" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E444563" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E444563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115732" e_stop="115857"/>
          <exon e_start="115961" e_stop="116157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACC</genome_strand>
        <mrna_strand>CCTGTATCTAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGCACTAGATGCATTGTTAAAGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACCCCAGAAGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTGGTAAAGCTTTACAGAGAGTCCCATCTTGGGAAGAGGCTTCCAGCCTATGACGGAAGAAAAAGTCTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340913" ref_strand="+" ref_description="SGN-E340913 [cTOF-5-M5]">
      <seq>cgcagatgggattatccctgaatattgatatgtcttccacagcattcattgagccactgccggtcattgaatttgtgagccagcttctgaatcgggatatctcttctagaccattgtctgatgctgatcgggttaagataaagaaggccctgagaggtgtaaaggtggaggtcactcatcgtgggaatatgaggaggaagtaccgcatatctggtttgacatctcaagcaacaagagaagttgactttccctgtagatgaaagaggtaccatgaaagctgttgtggaatactttcgagaaacgtatggttttgttattcagcatactcagttgccttgtcttcaagttggaaatacacaaaggccaaattatttgcctatggaggtctgcaagattgtggaggggcagaggtactccaaacgcttgaatgagaggcagataacagcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgatattcttcagactgttcgtcacaatgcttattcagatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctaccacaagtgggccaatggaatatgatgaataagaaaatgggtaatggaggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116315" stop="119213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116615" g_stop="116641" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116642" i_stop="116787" i_length="146">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116788" g_stop="116897" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="137" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116898" i_stop="117171" i_length="274">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117172" g_stop="117278" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="245" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229">
            <donor d_prob="0.983" d_score="0.96"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117508" g_stop="117646" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="384" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117729" g_stop="117845" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="501" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="609" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118835" g_stop="118906" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="681" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E340913" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116615" e_stop="116641"/>
          <exon e_start="116788" e_stop="116897"/>
          <exon e_start="117172" e_stop="117278"/>
          <exon e_start="117508" e_stop="117646"/>
          <exon e_start="117729" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATGGGATTATCCCTGAATATTGGTCAGCACATTTTTCATGACTATTACATTTTGATTTCATTTCTTCATTTTGTCGAACTTGCAACTGATTATCAGTCAAGTACAGCATTTTTACCACAATGTGTGCCTGTATGGGAACATGTTTCTCATCAATGTGCCCTTCTACAGATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAGGTTGGTTTTGCATATGACTATCGTATTCGTGATAGTCTCAGAGTCTACCAGAGCCTTTTACTGTTCCCAACAATTGATTGGGACAATAAAAAGAACCCATTTATTATATATATTAAATCTTCTCCTGCAGTTCCCTTTAGATATCATTTCATCCAAATAAGGATTTATTTCCAACAGCATCTACAATGATACATTCACATATTAGGGCCATTTCCTTTTTTTCTTTTTGGCAGGTTGTTTGGTTAATTTTGTTTTTAACCCTATTGAACTGCAGATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAG-AGTTGACGTATGTATTTCACTCAAGTCTGTAATTATGATGAAACAATTTTCTCTATGTCAAGTCTTGTCCATAATATTTTGCAGTTGGATCAACTTTTAACTTTTTCAAAAGAATATATTTTACAGTTGGATCAATTGGTGCAGTTAGTGGTGTGCCATCTGATCTTTAATGTTCTGTTGTCTGTATGTGGGATTAACTCATCGTTCTAATCACTGTGTTTTATTTGTTTGGGTAGTTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTGGGTGTGTTTTATCTTTCACATAACTTGTTATTTTCCAAGTATCTTGTGTATTTTATGTGCTTACATATCTCGAGTCCAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG</genome_strand>
        <mrna_strand>CGCAGATGGGATTATCCCTGAATATTG..................................................................................................................................................ATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAG..................................................................................................................................................................................................................................................................................ATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAAGTTGAC.....................................................................................................................................................................................................................................TTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG..................................................................................GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E295380" ref_strand="+" ref_description="SGN-E295380 [cLET-23-M18]">
      <seq>aaaggtggaggtcactcatcgtgggaatatgaggaggaagtaccgcatatctggtttgacatctcaagcaacaagagagttgactttccctgtagatgaaagaggtaccatgaaagctgttgtggaatactttcgagaaacgtatggttttgttattcagcatactcagttgccttgtcttcaagttggaaatacacaaaggccaaattatttgcctatggaggtctgcaagattgtggaggggcagaggtactccaaacgcttgaatgagaggcagataacagcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgatattcttcagactgttcgtcacaatgcttattcagatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctaccacaagtgggccaatggaatatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116895" stop="119200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117195" g_stop="117278" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117508" g_stop="117646" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="223" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117729" g_stop="117845" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="340" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="448" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118835" g_stop="118900" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="514" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E295380" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117195" e_stop="117278"/>
          <exon e_start="117508" e_stop="117646"/>
          <exon e_start="117729" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGACGTATGTATTTCACTCAAGTCTGTAATTATGATGAAACAATTTTCTCTATGTCAAGTCTTGTCCATAATATTTTGCAGTTGGATCAACTTTTAACTTTTTCAAAAGAATATATTTTACAGTTGGATCAATTGGTGCAGTTAGTGGTGTGCCATCTGATCTTTAATGTTCTGTTGTCTGTATGTGGGATTAACTCATCGTTCTAATCACTGTGTTTTATTTGTTTGGGTAGTTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTGGGTGTGTTTTATCTTTCACATAACTTGTTATTTTCCAAGTATCTTGTGTATTTTATGTGCTTACATATCTCGAGTCCAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATG</genome_strand>
        <mrna_strand>AAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGAC.....................................................................................................................................................................................................................................TTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG..................................................................................GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E420552" ref_strand="+" ref_description="SGN-E420552 [STM-31-K24]">
      <seq>gaggaagtaccgcatatctggtttgacatctcaagcaacaagagagttgactttccctgttgatgaaagaggtacaatgaaagctgttgtggagtactttcgagaaacctatggttttgttattcagcatactcagttgccttgtcttcaagttggaaatacacaaaggccaaattatttgcctatggaggtctgcaagattgtggaggggcagaggtactccaagcgcttgaatgagaggcagataacagcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgacattcttcagactgttcgtcacaatgcttatgctgatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctgccacaagtgggccagtggaatatgatgaataagaaaatggttaatggaggaacagtgaacaactggatctgtataaacttttctcgcaatgtgcaagacagtgttgcacggggattctgttctgagcttgcacaaatgtgcatgatatcgggcatgatcttcaacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116928" stop="120089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117228" g_stop="117278" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117508" g_stop="117646" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="190" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117729" g_stop="117845" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="307" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="415" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="118835" g_stop="118906" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="487" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758">
            <donor d_prob="0.583" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119665" g_stop="119787" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="610" r_length="123" r_score="0.959"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95">
            <donor d_prob="0.992" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="119883" g_stop="119892" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="620" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E420552" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E420552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117228" e_stop="117278"/>
          <exon e_start="117508" e_stop="117646"/>
          <exon e_start="117729" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118906"/>
          <exon e_start="119665" e_stop="119787"/>
          <exon e_start="119883" e_stop="119892"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGACGTATGTATTTCACTCAAGTCTGTAATTATGATGAAACAATTTTCTCTATGTCAAGTCTTGTCCATAATATTTTGCAGTTGGATCAACTTTTAACTTTTTCAAAAGAATATATTTTACAGTTGGATCAATTGGTGCAGTTAGTGGTGTGCCATCTGATCTTTAATGTTCTGTTGTCTGTATGTGGGATTAACTCATCGTTCTAATCACTGTGTTTTATTTGTTTGGGTAGTTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTGGGTGTGTTTTATCTTTCACATAACTTGTTATTTTCCAAGTATCTTGTGTATTTTATGTGCTTACATATCTCGAGTCCAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAGGTAACTGATATTAGCATGATTGAGATCCATGTTGCCAGTTTGACTGTCATTTCCATGCAGTTAAATGCCATCTATTGGTGTGTGTTCTCACAATGTTAGTCTTGCTTTGCCTCTAATTACTATTTTAAGGCCCCAAATGAAGTATCAGTTTAGTTGTTCATGCCTTATTTTACCTGTCTTTACTACATATGGCTTATGATAGAAAAACCGACCTCAAGGAACTTTAAAGTGTGCTTTGTTTTGTCCTTTCCTTTTTAATCTTGTAGATATCCTGCAGCAATTTCATCATATATTGATGGTCAAAAATTAGTTTGGTTGCTCTTTGTTACCCGTTCCATACACTATGTATGTTATGCTGTACCCTTAGAGATGCAGAGCTAAATTCGAGTTTTCTGATCCCACTGTTTGATCAACGTCACTAAGATCCATATACTTAGCTGCACCTTATGATAATATAGCCATAAAAGTTTATAGCAGGTTTGAACAAGGAAAGAGTTCTGGTGATAACTAGGAACTCAAAGACAATGAAAGGGAGTAGTATCAACGAAACAGTTGAGCATAAGAGTTCTTGATGGATACTTCCCGTTCATAGTTTTCTTTTTCTATGAAGTACATTTTTTTGCTCTGTTATGTGTCGATTTTCAGTCAATATTGGAGATTAAGTTAGTTTTAAATCTCAAATTAGCTGCCTTTCTGTTGAATTTCAGTCAGTGTGGGATGCGCTTTGGTTAATTACTCTACTCTATTGTTGTCGACAGAAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATGGTAATTGGACTTTAATGTTTTTCCATTTTTATTACTGTTACTTTTTTTGGTGGTCCCGCGACATAAAATTTTAAGACACTATTATATCTTTGTAGATCTTCAACC</genome_strand>
        <mrna_strand>GAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGAC.....................................................................................................................................................................................................................................TTTCCCTGTTGATGAAAGAGGTACAATGAAAGCTGTTGTGGAGTACTTTCGAGAAACCTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG..................................................................................GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAGCGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGACATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATGCTGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTGCCACAAGTGGGCCAGTGGAATATGATGAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTTAATGGAGGAACAGTGAACAACTGGATCTGTATAAACTTTTCTCGCAATGTGCAAGACAGTGTTGCACGGGGATTCTGTTCTGAGCTTGCACAAATGTGCATGATATCGGGCATG...............................................................................................ATCTTCAACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558808" ref_strand="+" ref_description="SGN-E558808 [18206]">
      <seq>actcagttgccttgtcttcaagttggaaatacacaaaggccaaattatttgcctatggaggtctgcaagattgtggaggggcagaggtactccaagcgcttgaatgagaggcagataacagcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgacattcttcagactgttcgtcacaatgcttatgctgatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctgccacaagtgggccagtggaatatgatgaataagaaaatggttaatggaggaacagtgaacaactggatctgtataaacttttctcgcaatgtgcaagacagtgttgcacggggattctgttctgagcttgcacaaatgtgcatgatatcgggcgtgatcttcaacccgaatcctgttctaccaccagtgagtgctcgccctgatcaagttgagagagtcttgaaaactcgatttcatgatgctatgacgaagttgcagccgaatgggagggagctcgatctgttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117287" stop="120314"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117587" g_stop="117646" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="117729" g_stop="117845" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="177" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="285" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="118835" g_stop="118906" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="357" r_length="72" r_score="0.972"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758">
            <donor d_prob="0.583" d_score="0.96"/>
            <acceptor a_prob="0.799" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119665" g_stop="119787" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="480" r_length="123" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95">
            <donor d_prob="0.992" d_score="0.92"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="119883" g_stop="120014" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="612" r_length="132" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E558808" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117587" e_stop="117646"/>
          <exon e_start="117729" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118906"/>
          <exon e_start="119665" e_stop="119787"/>
          <exon e_start="119883" e_stop="120014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTGGGTGTGTTTTATCTTTCACATAACTTGTTATTTTCCAAGTATCTTGTGTATTTTATGTGCTTACATATCTCGAGTCCAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAGGTAACTGATATTAGCATGATTGAGATCCATGTTGCCAGTTTGACTGTCATTTCCATGCAGTTAAATGCCATCTATTGGTGTGTGTTCTCACAATGTTAGTCTTGCTTTGCCTCTAATTACTATTTTAAGGCCCCAAATGAAGTATCAGTTTAGTTGTTCATGCCTTATTTTACCTGTCTTTACTACATATGGCTTATGATAGAAAAACCGACCTCAAGGAACTTTAAAGTGTGCTTTGTTTTGTCCTTTCCTTTTTAATCTTGTAGATATCCTGCAGCAATTTCATCATATATTGATGGTCAAAAATTAGTTTGGTTGCTCTTTGTTACCCGTTCCATACACTATGTATGTTATGCTGTACCCTTAGAGATGCAGAGCTAAATTCGAGTTTTCTGATCCCACTGTTTGATCAACGTCACTAAGATCCATATACTTAGCTGCACCTTATGATAATATAGCCATAAAAGTTTATAGCAGGTTTGAACAAGGAAAGAGTTCTGGTGATAACTAGGAACTCAAAGACAATGAAAGGGAGTAGTATCAACGAAACAGTTGAGCATAAGAGTTCTTGATGGATACTTCCCGTTCATAGTTTTCTTTTTCTATGAAGTACATTTTTTTGCTCTGTTATGTGTCGATTTTCAGTCAATATTGGAGATTAAGTTAGTTTTAAATCTCAAATTAGCTGCCTTTCTGTTGAATTTCAGTCAGTGTGGGATGCGCTTTGGTTAATTACTCTACTCTATTGTTGTCGACAGAAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATGGTAATTGGACTTTAATGTTTTTCCATTTTTATTACTGTTACTTTTTTTGGTGGTCCCGCGACATAAAATTTTAAGACACTATTATATCTTTGTAGATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATC</genome_strand>
        <mrna_strand>ACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG..................................................................................GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAGCGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGACATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATGCTGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTGCCACAAGTGGGCCAGTGGAATATGATGAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTTAATGGAGGAACAGTGAACAACTGGATCTGTATAAACTTTTCTCGCAATGTGCAAGACAGTGTTGCACGGGGATTCTGTTCTGAGCTTGCACAAATGTGCATGATATCGGGCGTG...............................................................................................ATCTTCAACCCGAATCCTGTTCTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGAGTCTTGAAAACTCGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338534" ref_strand="+" ref_description="SGN-E338534 [cTOE-15-P24]">
      <seq>agcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgatattcttcagactgttcgtcacaatgcttattcagatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctaccacaagtgggccaatggaatatgatgaataagaaaatggtaaatggaggaacagtgaacaactggatctgtataaatttttctcgcaatgtgcaagacagtgttgcccggggattttgttctgagcttgcacagatgtgcatgatatcgggcatgatcttcaacccgaatcctgttttaccaccagtgagtgctcgccctgatcaagttgagagggtcctgaaaactagatttcatgatgctatgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="117488" stop="120275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117788" g_stop="117845" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="166" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="118835" g_stop="118906" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="238" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119665" g_stop="119787" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="361" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="119883" g_stop="119975" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="454" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E338534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117788" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118906"/>
          <exon e_start="119665" e_stop="119787"/>
          <exon e_start="119883" e_stop="119975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAGGTAACTGATATTAGCATGATTGAGATCCATGTTGCCAGTTTGACTGTCATTTCCATGCAGTTAAATGCCATCTATTGGTGTGTGTTCTCACAATGTTAGTCTTGCTTTGCCTCTAATTACTATTTTAAGGCCCCAAATGAAGTATCAGTTTAGTTGTTCATGCCTTATTTTACCTGTCTTTACTACATATGGCTTATGATAGAAAAACCGACCTCAAGGAACTTTAAAGTGTGCTTTGTTTTGTCCTTTCCTTTTTAATCTTGTAGATATCCTGCAGCAATTTCATCATATATTGATGGTCAAAAATTAGTTTGGTTGCTCTTTGTTACCCGTTCCATACACTATGTATGTTATGCTGTACCCTTAGAGATGCAGAGCTAAATTCGAGTTTTCTGATCCCACTGTTTGATCAACGTCACTAAGATCCATATACTTAGCTGCACCTTATGATAATATAGCCATAAAAGTTTATAGCAGGTTTGAACAAGGAAAGAGTTCTGGTGATAACTAGGAACTCAAAGACAATGAAAGGGAGTAGTATCAACGAAACAGTTGAGCATAAGAGTTCTTGATGGATACTTCCCGTTCATAGTTTTCTTTTTCTATGAAGTACATTTTTTTGCTCTGTTATGTGTCGATTTTCAGTCAATATTGGAGATTAAGTTAGTTTTAAATCTCAAATTAGCTGCCTTTCTGTTGAATTTCAGTCAGTGTGGGATGCGCTTTGGTTAATTACTCTACTCTATTGTTGTCGACAGAAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATGGTAATTGGACTTTAATGTTTTTCCATTTTTATTACTGTTACTTTTTTTGGTGGTCCCGCGACATAAAATTTTAAGACACTATTATATCTTTGTAGATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACG</genome_strand>
        <mrna_strand>AGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATG...............................................................................................ATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E729147" ref_strand="+" ref_description="SGN-E729147 [LA20AE07]">
      <seq>gtgaacaactggatctgtataaatttttactcgcatgtgcacgacagtgttgcccggggattttgttctgagcttgcacagatgtgcatgatcatcgggcatgatcttcaacccgaatcctgttttaccaccagtgagtgctcgccctgatcaagttgagagggtcctgaaaactagatttcatgatgctatgacgaagtcgcagccgaatgggagggagctcgatctgttgatcgtaatattgcccgacaataatggctccctttatggtgatctaaaacgaatttgtgaaactgatcttggcattgtctcgcaatgctgcttgacaaaacatgtgtttaagatgagcaagcagtatttagccaatgtgtcccttaagattaatgtgaaggttggaggtagaaacaccgtgcttgttgatgcgatctctaggcgaattccccttgtcagcgaccgcccagctattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119386" stop="120696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119686" g_stop="119787" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119883" g_stop="120048" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="269" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120139" g_stop="120396" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="527" r_length="258" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E729147" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729147" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119686" e_stop="119787"/>
          <exon e_start="119883" e_stop="120048"/>
          <exon e_start="120139" e_stop="120396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACAACTGGATCTGTATAAATTTTT-CTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGAT-ATCGGGCATGGTAATTGGACTTTAATGTTTTTCCATTTTTATTACTGTTACTTTTTTTGGTGGTCCCGCGACATAAAATTTTAAGACACTATTATATCTTTGTAGATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATGGTACAGGCCAAGACTGGTGAAATTCATGTAGTGTTTCTTTGCAAGCTCCTGGAATATGCTGCAACTGAAGTATTTTATTTCTTTTTCTAGGTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTG</genome_strand>
        <mrna_strand>GTGAACAACTGGATCTGTATAAATTTTTACTCGC-ATGTGCACGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATCATCGGGCATG...............................................................................................ATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTCGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTAATATTGCCCGACAATAATGGCTCCCTTTATG..........................................................................................GTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAGCTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E436890" ref_strand="+" ref_description="SGN-E436890 [cSTA-1-D3]">
      <seq>caccagtgagtgctcgccctgatcaagttgagagagtcttgaaaactcgatttcatgatgctatgacgaagttgcagccgaatgggagggagctcgatctgttgatcgtcatattgcccgacaataatggctccctttatggtgatctaaaacggatttgtgaaactgatcttggcattgtctcgcaatgctgcttgacaaaacatgtgtttaagatgagcaagcagtatttagccaatgtgtcccttaagattaatgtgaaagttggaggaagaaacaccgtgcttgttgatgcgatctctaggcgaattccccttgtcagcgaccgcccaactattatttttggtgcagatgtcacccatccccaccctgnggaggattctagtccgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119608" stop="120687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119908" g_stop="120048" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120139" g_stop="120387" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="390" r_length="249" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E436890" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E436890" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119908" e_stop="120048"/>
          <exon e_start="120139" e_stop="120387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATGGTACAGGCCAAGACTGGTGAAATTCATGTAGTGTTTCTTTGCAAGCTCCTGGAATATGCTGCAACTGAAGTATTTTATTTCTTTTTCTAGGTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGT</genome_strand>
        <mrna_strand>CACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGAGTCTTGAAAACTCGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATG..........................................................................................GTGATCTAAAACGGATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAAGTTGGAGGAAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGNGGAGGATTCTAGTCCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297702" ref_strand="+" ref_description="SGN-E297702 [cLET-28-O9]">
      <seq>cgatctgttgatcgtcatattgcccgacaataatggctccctttatggtgatctaaaacgaatttgtgaaactgatcttggcattgtctcgcaatgctgcttgacaaaacatgtgtttaagatgagcaagcagtatttagccaatgtgtcccttaaaattaatgtgaaggttggaggtataaacaccgtgcttgttgatgcgatctctaggcgaattccccttgtcagcgaccgcccaactattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctgcggtggttgcttctcaagattggcctgagattaccaagtatgctggtctggtttctgctcaagctcataggcaagagcttatacaagatctgtacaagacttggcacgatccaactagaggaactgtgactggtggcatgataaaggaattgctgatttccttccgtcgagcgactggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119702" stop="121085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120002" g_stop="120048" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120139" g_stop="120398" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="307" r_length="260" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120496" g_stop="120638" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="450" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120750" g_stop="120785" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="486" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E297702" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120002" e_stop="120048"/>
          <exon e_start="120139" e_stop="120398"/>
          <exon e_start="120496" e_stop="120638"/>
          <exon e_start="120750" e_stop="120785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATGGTACAGGCCAAGACTGGTGAAATTCATGTAGTGTTTCTTTGCAAGCTCCTGGAATATGCTGCAACTGAAGTATTTTATTTCTTTTTCTAGGTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTAGGTTGTTGTGTACTTCATTCTTTTGGTTTCTCTGATCCTCTTGGTAATCTATTTCTCCAAAGCAAATATAGTGCTCAATTTTCATATCTTTTAGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGTATTGTCCTTTTCCCTTTCCTTTTTTGAAAGAACATGCCCTAATGTTCGAATTTTTATTGTACTGGACTTAATTTTGCTTCTGATTCTTGCTCTTTTATCTATCACTCAGGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACA</genome_strand>
        <mrna_strand>CGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATG..........................................................................................GTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAAATTAATGTGAAGGTTGGAGGTATAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG.................................................................................................GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCACGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA...............................................................................................................GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731247" ref_strand="+" ref_description="SGN-E731247 [LA26CC11]">
      <seq>cattatttagccaatgtgtcccttaagattaatgtgaaggttggaggtagaaacaccgtgcttgttgatgcgatctctaggcgaattccccttgtcagcgaccgcccaactattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctgcggtggttgcttctcaagattggcctgagattaccaagtatgctggtctggtttctgctcaagctcataggcaagagcttatacaagatctgtacaagacttggcaagatccaactagaggaactgtgactggtggcatgataaaggaattgctgatttccttccgtcgagcgactggacagaagcctcagagaataatattctaccgagatggagttagtgagggacagttttatcaagtgcttctttttgaacttgatgcaatccgcaaggcttgtgcatctttagaacccaactatcagcccccagttacgtttgtggtggtgcaaaagcgtcaccacacaaggttgtttgccaacaaccaccgtgatcgaaatgctgtcgatcggagtgggaacattttgcctggtactgtggttgattcaaagatctgtcaccctactgagtttgatttctatctctgtagccatgctggcatacagggtactagccggccagcacattatcatgtcttgtgggacgagaacnatttttctgctgatgggctgcagtctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="119922" stop="121855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120222" g_stop="120398" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120496" g_stop="120638" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="320" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120750" g_stop="120812" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="383" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.501" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120899" g_stop="120962" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="447" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121107" g_stop="121242" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="583" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121243" i_stop="121324" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121325" g_stop="121398" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="657" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121399" i_stop="121480" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121481" g_stop="121555" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="732" r_length="75" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E731247" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120222" e_stop="120398"/>
          <exon e_start="120496" e_stop="120638"/>
          <exon e_start="120750" e_stop="120812"/>
          <exon e_start="120899" e_stop="120962"/>
          <exon e_start="121107" e_stop="121242"/>
          <exon e_start="121325" e_stop="121398"/>
          <exon e_start="121481" e_stop="121555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTAGGTTGTTGTGTACTTCATTCTTTTGGTTTCTCTGATCCTCTTGGTAATCTATTTCTCCAAAGCAAATATAGTGCTCAATTTTCATATCTTTTAGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGTATTGTCCTTTTCCCTTTCCTTTTTTGAAAGAACATGCCCTAATGTTCGAATTTTTATTGTACTGGACTTAATTTTGCTTCTGATTCTTGCTCTTTTATCTATCACTCAGGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCGGTATTTATGATTAACCCTTCTATGCCTGCAATTTGCAATTTTTGTTTTCCTCTTGGGCTGAAATTGGTCGTCTTTTCTCCCCTCAGAGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAGGTATTTTCTTTTCTGCTATATCTTAGTCTGCCTGTTTATTATGAACTCAGAATTTCTTTCTATTTTCTGGACGATGAGGATGGCTAGAAACAAGCGTGCCCTTTTACTTGTTAGAAGTTCTGAACTGTCTTAAATCCGATTCAGGCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTGGTGAGTGTTAATTTCAGTATCTCTGATGATTCTATAATAGCTGCAAATGATCCTAAAACCTTCTTAAAATGTAATTGTGAAGGTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAGGTAATAAGATAGATATTCTATAAAATTTGATCGTCATGTTTAAAGGACTTGGTTGTAAGTTCCCAATTTTGTGGTATTGCAGGGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTG</genome_strand>
        <mrna_strand>CATTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG.................................................................................................GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA...............................................................................................................GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG......................................................................................AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG................................................................................................................................................GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTG..................................................................................GTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAG..................................................................................GGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACNATTTTTCTGCTGATGGGCTGCAGTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310022" ref_strand="+" ref_description="SGN-E310022 [cTOA-4-O17]">
      <seq>agcgaccgcccaactattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctgcgggggttgcttctcaagattggcctgagattaccaagtatgctggtctggtttctgctcaagctcataggcaagagcttatacaagatctgtacaagacttggcaagatccaactagaggaactgtgactggtggcatgataaaggaattgctgatttccttccgtcgagcgactggacagaagcctcagagaataatattctaccgagatggagttagtgagggacagttttatcaagtgcttctttttgaacttgatgcaatccgcaaggcttgtgcatctttagaacccaactatcagcccccagttacgtttgtggtggtgcaaaagcgtcaccacacaaggttgtttgccaacaaccaccgtgatcgaaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120018" stop="121514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120318" g_stop="120398" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120496" g_stop="120638" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="224" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120750" g_stop="120812" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="287" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.501" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120899" g_stop="120962" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="351" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121107" g_stop="121214" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="459" r_length="108" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E310022" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120318" e_stop="120398"/>
          <exon e_start="120496" e_stop="120638"/>
          <exon e_start="120750" e_stop="120812"/>
          <exon e_start="120899" e_stop="120962"/>
          <exon e_start="121107" e_stop="121214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTAGGTTGTTGTGTACTTCATTCTTTTGGTTTCTCTGATCCTCTTGGTAATCTATTTCTCCAAAGCAAATATAGTGCTCAATTTTCATATCTTTTAGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGTATTGTCCTTTTCCCTTTCCTTTTTTGAAAGAACATGCCCTAATGTTCGAATTTTTATTGTACTGGACTTAATTTTGCTTCTGATTCTTGCTCTTTTATCTATCACTCAGGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCGGTATTTATGATTAACCCTTCTATGCCTGCAATTTGCAATTTTTGTTTTCCTCTTGGGCTGAAATTGGTCGTCTTTTCTCCCCTCAGAGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAGGTATTTTCTTTTCTGCTATATCTTAGTCTGCCTGTTTATTATGAACTCAGAATTTCTTTCTATTTTCTGGACGATGAGGATGGCTAGAAACAAGCGTGCCCTTTTACTTGTTAGAAGTTCTGAACTGTCTTAAATCCGATTCAGGCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCT</genome_strand>
        <mrna_strand>AGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG.................................................................................................GGGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA...............................................................................................................GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG......................................................................................AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG................................................................................................................................................GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342672" ref_strand="+" ref_description="SGN-E342672 [cTOF-7-P13]">
      <seq>caactattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctgcggtggttgcttctcaagattggcctgagattaccaagtatgctggtctggtttctgctcaagctcataggcaagagcttatacaagatctgtacaagacttggcaagatccaactagaggaactgtgactggtggcatgataaaggaattgctgatttccttccgtcgagcgactggacagaagcctcagagaataatattctaccgagatggagttagtgagggacagttttatcaagtgcttctttttgaacttgatgcaatccgcaaggcttgtgcatctttagaacccaactatcagcccccagttacgtttgtggtggtgcaaaagcgtcaccacacaaggttgtttgccaacaaccaccgtgatcgaaatgctgtcgatcggagtgggaacattttgcctggtactgtggttgattcaaagatctgtcaccctactgagtttgatttctatctctgtagccatgctggcatacagggtactagccggccagcacattatcatgtcttgtgggacgagaaccaattttctgctgatgggctgcagtctttgactaacaacctttgctacacatatgctaggtgtactcgttctgtctccattgntcctccagcatattatgcacatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="120028" stop="122161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120328" g_stop="120398" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120496" g_stop="120638" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="214" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120750" g_stop="120812" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="277" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.501" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120899" g_stop="120962" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="341" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="121107" g_stop="121242" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="477" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="121243" i_stop="121324" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="121325" g_stop="121398" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="551" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="121399" i_stop="121480" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="121481" g_stop="121575" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="646" r_length="95" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="121646" g_stop="121677" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="678" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156">
            <donor d_prob="0.814" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="121834" g_stop="121861" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="706" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E342672" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120328" e_stop="120398"/>
          <exon e_start="120496" e_stop="120638"/>
          <exon e_start="120750" e_stop="120812"/>
          <exon e_start="120899" e_stop="120962"/>
          <exon e_start="121107" e_stop="121242"/>
          <exon e_start="121325" e_stop="121398"/>
          <exon e_start="121481" e_stop="121575"/>
          <exon e_start="121646" e_stop="121677"/>
          <exon e_start="121834" e_stop="121861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTAGGTTGTTGTGTACTTCATTCTTTTGGTTTCTCTGATCCTCTTGGTAATCTATTTCTCCAAAGCAAATATAGTGCTCAATTTTCATATCTTTTAGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGTATTGTCCTTTTCCCTTTCCTTTTTTGAAAGAACATGCCCTAATGTTCGAATTTTTATTGTACTGGACTTAATTTTGCTTCTGATTCTTGCTCTTTTATCTATCACTCAGGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCGGTATTTATGATTAACCCTTCTATGCCTGCAATTTGCAATTTTTGTTTTCCTCTTGGGCTGAAATTGGTCGTCTTTTCTCCCCTCAGAGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAGGTATTTTCTTTTCTGCTATATCTTAGTCTGCCTGTTTATTATGAACTCAGAATTTCTTTCTATTTTCTGGACGATGAGGATGGCTAGAAACAAGCGTGCCCTTTTACTTGTTAGAAGTTCTGAACTGTCTTAAATCCGATTCAGGCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTGGTGAGTGTTAATTTCAGTATCTCTGATGATTCTATAATAGCTGCAAATGATCCTAAAACCTTCTTAAAATGTAATTGTGAAGGTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAGGTAATAAGATAGATATTCTATAAAATTTGATCGTCATGTTTAAAGGACTTGGTTGTAAGTTCCCAATTTTGTGGTATTGCAGGGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACACGTAAGTTGAATGTAGCTTCCATAGTTCTTTAAATCTCCAGTATTCTGATGGACTTTTATTTTTTTTCCAGATATGCTAGGTGTACTCGTTCTGTCTCCATTGGTATGTTCACTGGCTTGTTAGTGGTTTTTCTTTTGCATCTATTTTTGATGCCCAATCTAACCCCTCTCCCCCCAATTCTTTCTTGGAATTTCCTTTCTGTGTAACCTGTTCATCATAGCATGTTAGTGAACTTGAGTTCGTTGATGTCGTTTGCAGTTCCTCCAGCATATTATGCACATTTGGC</genome_strand>
        <mrna_strand>CAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG.................................................................................................GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA...............................................................................................................GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG......................................................................................AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG................................................................................................................................................GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTG..................................................................................GTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAG..................................................................................GGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACCAATTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACAC......................................................................ATATGCTAGGTGTACTCGTTCTGTCTCCATTG............................................................................................................................................................NTCCTCCAGCATATTATGCACATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238633" ref_strand="+" ref_description="SGN-E238633 [cLEL-9-B19](-)">
      <seq>acatatgctaggtgtactcgttctgtctccattgttcctccagcatattatgcacatttggcagctttccgtgctcgtttttacatggaaccagagacatctgacggtggatctgtcacaagcggagctgctccgtacaaaggtggtgtaggagctgttggaaggagcacaagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaaggagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtacattgtggcttgaacaattgctattgaagagcatggctagttatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121344" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121574" g_stop="121575" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121646" g_stop="121677" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="34" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156">
            <donor d_prob="0.814" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121834" g_stop="122238" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="439" r_length="405" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122239" i_stop="124335" i_length="2097">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.830" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124336" g_stop="124349" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="453" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E238633" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238633" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121574" e_stop="121575"/>
          <exon e_start="121646" e_stop="121677"/>
          <exon e_start="121834" e_stop="122238"/>
          <exon e_start="124336" e_stop="124349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTAAGTTGAATGTAGCTTCCATAGTTCTTTAAATCTCCAGTATTCTGATGGACTTTTATTTTTTTTCCAGATATGCTAGGTGTACTCGTTCTGTCTCCATTGGTATGTTCACTGGCTTGTTAGTGGTTTTTCTTTTGCATCTATTTTTGATGCCCAATCTAACCCCTCTCCCCCCAATTCTTTCTTGGAATTTCCTTTCTGTGTAACCTGTTCATCATAGCATGTTAGTGAACTTGAGTTCGTTGATGTCGTTTGCAGTTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAAGTGCCTTGTTATTTTCTTTTTTGGTATTTCTCTACATAACATAAAAAAAAAGGTCTTGACAATCTTGTGAACATGCGCCCTTGTGTAGATGTTAATTGAAGACAGTAAGTTTCATAGCAAGCCCATGATAACACGACTCACTCATCTGTAGCAAGTGCTCCTATAGCTGCACGGAGTAGGGGAGTGCAAGTAGATAATGATTTGCCTAGACTATGTGAAATAGTCCCGGTATTATTACTCCCTAGTTTTACTAATACATTTTATTCAATACTATTTTTATACACGATCCCTCATAGTACAACATGTGTTATTTCAGAACTTAGCGTAGAATATACACTCTACCAAACAATCAAGATGTGTTTCAGAACTTAGTGTAGTGAAAAGCAATCTTTTTATTATACTAGCAATAGGTTCAGTTAAATTCAGGTGCACAAAGGAAGATATCAAGCTTTTTAACCCTGTTCCAGAACTTGGGAACTTTCTTTCCAACTTCAGCACCAACAGTTCTCTGCTGTTCACCCTTTTTGACATTGCCAACAACAGCCTCTTCAGGCACTTTAAAGCAACCCTTCAACCCCATCTTGGACCTGCCCCTTTTCTCTTCTTCATGTTTCAGTAGCTGCTCATAATACTCATTGTTCCTTCTCTCCAATCCATATATCTGACTTTGAAGATCCTCAACTTTTCGACTAAGCATGCAAACTCTGTGATTCTCCCTTCTGTTTAGCATGCACCTTGCAAGCTCAGCTACCTTCCTCTTCATGAACAAAGACTCTGACGACAACCCCTTATTCTCCTCCATCAATGAACCCACTTTGTATCCCAATCTCGCGTTCTCATTTAACAAGATCAACCTCTCCGATTCCAACAACTCCAATAAGCTCTCCTGCAACTCTATCTTCCTTGATGACTCGTTGCAATGCTTGTCAACTTGACTAAGCTCGTGCAGTATGATTTCACAGTCTACACTTCTGATCACCAAGTCTGCAATGATCATGTCTGGTTCAAATTTGGCTTGTGTGGATGGAAATGGAGGCTGATATGATAATGAACTCTCAGCATCAGAATCAATAATCTCCGATCCGTTGTTCTCTTCCTTATCAAATTGATCATCATTATCATGATCATAATGGAAGGATGGAATAGGGAAGGAATTTTGACGATGATGGTTCTTGGCAAGTGTTTGGCAATAGCGGTCTGCCAAAGAGAGATAGTTGCCATACAATTCTTGAAGTAAGGCCAGAAGCTGTGGCCGTTTCTGGTAGTAAGCATCAGCGCGTTCTGTAAAACTGTCAGCACCATATTTATTGGGAATGTTCACGACCAACTTCTTCATCTTCGTGTCCAAATCTGAAGAAAAAAACACAATCCAAATACAATCAAATATGTGTATGATGTTGACTTGACAAGTAAAGCATTTGAAAATTTGAATTCTACACCTCTTTTAAATTGATCAAATCCAAGTTAAAAAATGGACCCTTTGGCTCTTGCCTGGACCATGAGCTACAGTGACAGATGTTGACAATGAAACTTAATACACCTATTTATTAAGTTTTATCATTTCCCATAACATTGACAACAACAACATATCCATAAGTGAGATTTAGAGCATACACATATCTTACTCCTTTATTTTCAAATATACATTGATATCTATCCATACTTGTTCCCCGCACATATACACATAGGATTAACAATAGTTTAAATTTCTCTTTTACCTTAATCAAATAATTTACAGTAAGGAGATATTGTTTTAAACCATAAATTTTAAAAGTCTTTATTTTTTCCTTAAACAACATATCAAGTCAAATAATGTCACATAAAATGGGACGAAAAGGGTGATACTAATTACTAAACTCTATCCAAACCCTCACACACACACACATGTTGACTTTGAAACATTGGATATGACCAAGTCTATGAACAATCTGCCAACCAGGCAGAAGGATTAAAGGTACTGTTAATTCTGCTGAGGAAACAGACATTATTTTCTTTCTGCAACACAACAGTATGGTGTGATACATCCCTTTTAGAGGGAGGTCCTACTATTCAAATTTCAAAAAAAGAAGCATTTTTTGTCTACTCTTTAAACCTCAGACAGAAACAGCAAA</genome_strand>
        <mrna_strand>AC......................................................................ATATGCTAGGTGTACTCGTTCTGTCTCCATTG............................................................................................................................................................TTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAAAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTACATTGTGGCTTGAACAATTGCTATTGAAGAGCATGGCTAGTTATTTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239118" ref_strand="+" ref_description="SGN-E239118 [cLEL-9-B19](-)">
      <seq>tccattgttcctccagcatattatgcacatttggcagctttccgtgctcgtttttacatggaaccagagacatctgacggtggatctgtcacaagcggagctgctccgtacagaggtggtgtaggagctgttggaaggagcacaagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaaggagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccagactatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagctatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121533" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121671" g_stop="121677" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156">
            <donor d_prob="0.814" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121834" g_stop="122238" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="412" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="122239" i_stop="124335" i_length="2097">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.830" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="124336" g_stop="124349" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="426" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E239118" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121671" e_stop="121677"/>
          <exon e_start="121834" e_stop="122238"/>
          <exon e_start="124336" e_stop="124349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTGGTATGTTCACTGGCTTGTTAGTGGTTTTTCTTTTGCATCTATTTTTGATGCCCAATCTAACCCCTCTCCCCCCAATTCTTTCTTGGAATTTCCTTTCTGTGTAACCTGTTCATCATAGCATGTTAGTGAACTTGAGTTCGTTGATGTCGTTTGCAGTTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAAGTGCCTTGTTATTTTCTTTTTTGGTATTTCTCTACATAACATAAAAAAAAAGGTCTTGACAATCTTGTGAACATGCGCCCTTGTGTAGATGTTAATTGAAGACAGTAAGTTTCATAGCAAGCCCATGATAACACGACTCACTCATCTGTAGCAAGTGCTCCTATAGCTGCACGGAGTAGGGGAGTGCAAGTAGATAATGATTTGCCTAGACTATGTGAAATAGTCCCGGTATTATTACTCCCTAGTTTTACTAATACATTTTATTCAATACTATTTTTATACACGATCCCTCATAGTACAACATGTGTTATTTCAGAACTTAGCGTAGAATATACACTCTACCAAACAATCAAGATGTGTTTCAGAACTTAGTGTAGTGAAAAGCAATCTTTTTATTATACTAGCAATAGGTTCAGTTAAATTCAGGTGCACAAAGGAAGATATCAAGCTTTTTAACCCTGTTCCAGAACTTGGGAACTTTCTTTCCAACTTCAGCACCAACAGTTCTCTGCTGTTCACCCTTTTTGACATTGCCAACAACAGCCTCTTCAGGCACTTTAAAGCAACCCTTCAACCCCATCTTGGACCTGCCCCTTTTCTCTTCTTCATGTTTCAGTAGCTGCTCATAATACTCATTGTTCCTTCTCTCCAATCCATATATCTGACTTTGAAGATCCTCAACTTTTCGACTAAGCATGCAAACTCTGTGATTCTCCCTTCTGTTTAGCATGCACCTTGCAAGCTCAGCTACCTTCCTCTTCATGAACAAAGACTCTGACGACAACCCCTTATTCTCCTCCATCAATGAACCCACTTTGTATCCCAATCTCGCGTTCTCATTTAACAAGATCAACCTCTCCGATTCCAACAACTCCAATAAGCTCTCCTGCAACTCTATCTTCCTTGATGACTCGTTGCAATGCTTGTCAACTTGACTAAGCTCGTGCAGTATGATTTCACAGTCTACACTTCTGATCACCAAGTCTGCAATGATCATGTCTGGTTCAAATTTGGCTTGTGTGGATGGAAATGGAGGCTGATATGATAATGAACTCTCAGCATCAGAATCAATAATCTCCGATCCGTTGTTCTCTTCCTTATCAAATTGATCATCATTATCATGATCATAATGGAAGGATGGAATAGGGAAGGAATTTTGACGATGATGGTTCTTGGCAAGTGTTTGGCAATAGCGGTCTGCCAAAGAGAGATAGTTGCCATACAATTCTTGAAGTAAGGCCAGAAGCTGTGGCCGTTTCTGGTAGTAAGCATCAGCGCGTTCTGTAAAACTGTCAGCACCATATTTATTGGGAATGTTCACGACCAACTTCTTCATCTTCGTGTCCAAATCTGAAGAAAAAAACACAATCCAAATACAATCAAATATGTGTATGATGTTGACTTGACAAGTAAAGCATTTGAAAATTTGAATTCTACACCTCTTTTAAATTGATCAAATCCAAGTTAAAAAATGGACCCTTTGGCTCTTGCCTGGACCATGAGCTACAGTGACAGATGTTGACAATGAAACTTAATACACCTATTTATTAAGTTTTATCATTTCCCATAACATTGACAACAACAACATATCCATAAGTGAGATTTAGAGCATACACATATCTTACTCCTTTATTTTCAAATATACATTGATATCTATCCATACTTGTTCCCCGCACATATACACATAGGATTAACAATAGTTTAAATTTCTCTTTTACCTTAATCAAATAATTTACAGTAAGGAGATATTGTTTTAAACCATAAATTTTAAAAGTCTTTATTTTTTCCTTAAACAACATATCAAGTCAAATAATGTCACATAAAATGGGACGAAAAGGGTGATACTAATTACTAAACTCTATCCAAACCCTCACACACACACACATGTTGACTTTGAAACATTGGATATGACCAAGTCTATGAACAATCTGCCAACCAGGCAGAAGGATTAAAGGTACTGTTAATTCTGCTGAGGAAACAGACATTATTTTCTTTCTGCAACACAACAGTATGGTGTGATACATCCCTTTTAGAGGGAGGTCCTACTATTCAAATTTCAAAAAAAGAAGCATTTTTTGTCTACTCTTTAAACCTCAGACAGAAACAGCAAA</genome_strand>
        <mrna_strand>TCCATTG............................................................................................................................................................TTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGACTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGCTATTTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740692" ref_strand="+" ref_description="SGN-E740692 [LC22CA03]">
      <seq>cgccaagggcataagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaagcagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121661" stop="122538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121958" g_stop="122238" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="282" polyA_stop="291"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E740692" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121958" e_stop="122238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</genome_strand>
        <mrna_strand>CGCCAAGGGCATAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGCAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740452" ref_strand="+" ref_description="SGN-E740452 [LC21CA03]">
      <seq>gcataagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaagcagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121666" stop="122538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121966" g_stop="122238" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="283"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E740452" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121966" e_stop="122238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</genome_strand>
        <mrna_strand>GCATAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGCAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736050" ref_strand="+" ref_description="SGN-E736050 [LC04AF06]">
      <seq>gcacaagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaagcagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121666" stop="122538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121966" g_stop="122238" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="283"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E736050" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121966" e_stop="122238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</genome_strand>
        <mrna_strand>GCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGCAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E740926" ref_strand="+" ref_description="SGN-E740926 [LC23CA10]">
      <seq>gcacaagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaagcagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagttatttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121666" stop="122538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121966" g_stop="122238" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="274" polyA_stop="283"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E740926" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121966" e_stop="122238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</genome_strand>
        <mrna_strand>GCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGCAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561008" ref_strand="+" ref_description="SGN-E561008 [20753]">
      <seq>aggggtttgcttgcagaagagtaactcgtcggagaaacagcagcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagcgcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttggttctagatgatgccgaggaagtcaatgtgaagaagaatagcagaaagcagttagggcggattcttctgaaaggagataatatcacattgatgatgaacacggggaaatgatttcatgttagcaggatcttgtgaagaagtttgatttttcctggcaaaaatctactattgaaacaacaactctttgaggacaaggagcaggatgttagacgcaaatcattgagtttgaagttccatttatgttttgatatatgtatattcagaatggtatgctcagacctctttatacagtgaagaagagtagccttatgaccatttctctctatgttggtagtattgttgtcacaattatattgcaggtaaagaagtgtgttaacttgagaaattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129289" stop="33981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128989" g_stop="128897" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="120" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="183" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127317" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="262" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127201" g_stop="127156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="308" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.81"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127001" g_stop="126726" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="596" r_length="288" r_score="0.826"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="126725" i_stop="125713" i_length="1013">
            <donor d_prob="0.000" d_score="0.69"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="125712" g_stop="125698" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="611" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E561008" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128989" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127317"/>
          <exon e_start="127201" e_stop="127156"/>
          <exon e_start="127001" e_stop="126726"/>
          <exon e_start="125712" e_stop="125698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAGGTGCGTAGTAAATAACTTTCAACCTAAGGCCTAGCCCTTTTCTCCCTCGGAATTACAACAAAAAATCATATTCTCTACTACTTTTGTTTCTAAGATGTCTTTGTTTCCTCTGCAGGGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACACGTATGTTTTCGACTCATTGCTTTACCGCTTTTCCCGATGCACCTGAAAACATAGTTAATCACTCCTAACAAATAGGTTATAACTGCCATTATGAAATCTCTCCCCTTTGGCAGTGTAATGCTGATATATTTTCATTTGTTTTCTCTCTATTCAGGGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAG-TTCAATTTT-CTGGCAAAAATCAACTATTGGAATGTC--GTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTA--------ACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTGTTACTATGGATTTTTCATGTCTAATATGCTTTTTTAGGGTGGAGGTGTTGCCCAGTCATGGTGCATGACTAAATTTACATGTGATTCATTCTCAACGTTATCGTTACAAATGGATCCGTAAATCTTCGAGTGAAATTTCTCGTCTCACCAAACAATCATATAATCGTTTTTGGGACACACTTCAGGGAGACGATCTTTTGTAACAGTGTGATTCTTTCGTTCTAAAAAAAGAAATCTTGAATTCGAACTCTATGAGAATGACATTGACATAAAAGATTACCCCTTGAAAGGGTAAATTAGATATCGAAAAACCAATAATTGAATTGTCAATTCGAACTTCTCCAGCTAGGTCTGCCTGCTATTCCGTACGTCCTTACAGACATCTTAGGAAGTACCCAATTACCCATTGTCGAGAAAAATGGGTGGCTTTTTGCAAAATATTAAAAGAATGTTGGAAATTAAAATTTAAAAGATTTGTGAAAGTTACCCCCTCCGTCCCTTTTTACTTGTTCACTTTTGAATTGATACACCTATTAATGACGTAGTGAGTTTACCATTTTATTCATATTAATTATGAAGTTGGTGAAAAAATTTACATTTAAAAAAAATTGTCATTTCTTGATTTGTTAAAATGGATAAATAATTAGGGATAACTATAAAAGGAAAATTAGATAAGTAATTAGGGACGGAAGGAGCATTGTTTTATAATCATTTTTACCTGAATTATTATTTATTTATTTTTTGGGGAAAAGGTTGAGATTTTTATAAATACTAGCCTTTCAAAATTAATTTTCAAATCGTTGCAGGCTTTTAGATAATTTTCAGTTGAATGAAAGATTTAATAAGAATATTTAAAAATTACTAAAGATGAAATTTTAAATTGGGAAAAAAAGGTGAGAGTGTACGATTAAAAATTGTTGTTTCTCTTAATATATGTATCTATCTAGGGTGAATTTCAGCATTTATTTGGGGTAACTATTTATAACGAAAGTGTTTTATATCAGTGCCACAAAAAAAAAAAAAAA</genome_strand>
        <mrna_strand>AGGGGTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCAGCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCGCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG...................................................................................................................GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC..........................................................................................................................................................GGGGAAATGATTTCATGTTAGCAGGATCTTGTGAAGAAGTTTGATTTTTCCTGGCAAAAATCTACTATTGAAACAACAACTCTTTGAGGACAAGGAGCAGGATGTTAGACGCAAATCATTGAGTTTGAAGTTCCATTTATGTTTTGATATATGTATATTCAGAATGGTATGCTCAGACCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTATTGTTGTCACAATTATATTGCAGGTAAAGAAGTGTGTTAACTTGAGAAATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349656" ref_strand="+" ref_description="SGN-E349656 [cTOS-3-M15]">
      <seq>aaggttctacttacgcaaatagtctcaaaatttaaacttaacgacaacacgagcccaaacccgaattcatctccgggtaatgtaatgcgacatttcgattctcaaatagcaaggcttgagacttttgagtcaaactagggttttgcttgcagaagagtaactcgtcggagaaacagcatcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagctcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttggttctagatgatgccgaggaagtcaatgtgaagaagaatagcagaaagcagttagggcggattcttctgaaaggagataatatcacattgatgatgaacacggngaaatgatttcctgttagctggatcttgagaagaagttcaattttctggcaaaaatcaactattggaatgtcgtctttgtggacaagaagctggatgttagatgcacatgattgagtttgaacttccatttatgttttgatatatgtatattcagcatggtatgctcagatctctttatacagtgaagaagagtagccttatgaccatttctctctatgttggtagtaacaattatatcgcaggtaaagaattgtgttaactcgagaaatcaagtgttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129425" stop="126417"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129125" g_stop="128897" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="256" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="319" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127317" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="398" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127201" g_stop="127156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="444" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127001" g_stop="126717" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="729" r_length="285" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E349656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129125" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127317"/>
          <exon e_start="127201" e_stop="127156"/>
          <exon e_start="127001" e_stop="126717"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAGGTGCGTAGTAAATAACTTTCAACCTAAGGCCTAGCCCTTTTCTCCCTCGGAATTACAACAAAAAATCATATTCTCTACTACTTTTGTTTCTAAGATGTCTTTGTTTCCTCTGCAGGGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACACGTATGTTTTCGACTCATTGCTTTACCGCTTTTCCCGATGCACCTGAAAACATAGTTAATCACTCCTAACAAATAGGTTATAACTGCCATTATGAAATCTCTCCCCTTTGGCAGTGTAATGCTGATATATTTTCATTTGTTTTCTCTCTATTCAGGGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTGTTACTA</genome_strand>
        <mrna_strand>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG...................................................................................................................GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC..........................................................................................................................................................GGNGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350455" ref_strand="+" ref_description="SGN-E350455 [cTOS-5-J16]">
      <seq>cttgcagaagagtaactcgtcggagaaacagcatcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagctcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttggttctagatgatgccgaggaagtcaatgtgaagaagaatagcagaaagcagttagggcggattcttctgaaaggagataatatcacattgatgatgaacacggggaaatgatttcctgttagctggatcttgagaagaagttcaattttctggcaaaaatcaactattggaatgtcgtctttgtggacaagaagctggatgttagatgcacatgattgagtttgaacttccatttatgttttgatatatgtatattcagcatggtatgctcagatctctttatacagtgaagaagagtagccttatgaccatttctctctatgttggtagtaacaattatatcgcaggtaaagaattgtgttaactcgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129280" stop="126426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128980" g_stop="128897" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="111" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="174" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127317" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="253" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127201" g_stop="127156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="299" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127001" g_stop="126723" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="578" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E350455" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350455" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128980" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127317"/>
          <exon e_start="127201" e_stop="127156"/>
          <exon e_start="127001" e_stop="126723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAGGTGCGTAGTAAATAACTTTCAACCTAAGGCCTAGCCCTTTTCTCCCTCGGAATTACAACAAAAAATCATATTCTCTACTACTTTTGTTTCTAAGATGTCTTTGTTTCCTCTGCAGGGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACACGTATGTTTTCGACTCATTGCTTTACCGCTTTTCCCGATGCACCTGAAAACATAGTTAATCACTCCTAACAAATAGGTTATAACTGCCATTATGAAATCTCTCCCCTTTGGCAGTGTAATGCTGATATATTTTCATTTGTTTTCTCTCTATTCAGGGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTG</genome_strand>
        <mrna_strand>CTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG...................................................................................................................GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC..........................................................................................................................................................GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341219" ref_strand="+" ref_description="SGN-E341219 [cTOE-22-A6]">
      <seq>taactcgtcggagaaacagcatcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagctcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttggttctagatgatgccgaggaagtcaatgtgaagaagaatagcagaaagcagttagggcggattcttctgaaaggagataatatcacattgatgatgaacacggggaaatgatttcctgttagctggatcttgagaagaagttcaattttctggcaaaaatcaactattggaatgtcgtctttgtggacaagaagctggatgttagatgcacatgattgagtttgaacttccatttatgttttgatatatgtatattcagcatggtatgctcagatctctttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129268" stop="126519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128968" g_stop="128897" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="99" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="162" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127317" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="241" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127201" g_stop="127156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="287" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127001" g_stop="126819" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="470" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E341219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128968" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127317"/>
          <exon e_start="127201" e_stop="127156"/>
          <exon e_start="127001" e_stop="126819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAGGTGCGTAGTAAATAACTTTCAACCTAAGGCCTAGCCCTTTTCTCCCTCGGAATTACAACAAAAAATCATATTCTCTACTACTTTTGTTTCTAAGATGTCTTTGTTTCCTCTGCAGGGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACACGTATGTTTTCGACTCATTGCTTTACCGCTTTTCCCGATGCACCTGAAAACATAGTTAATCACTCCTAACAAATAGGTTATAACTGCCATTATGAAATCTCTCCCCTTTGGCAGTGTAATGCTGATATATTTTCATTTGTTTTCTCTCTATTCAGGGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATA</genome_strand>
        <mrna_strand>TAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG...................................................................................................................GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC..........................................................................................................................................................GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356354" ref_strand="+" ref_description="SGN-E356354 [cTOS-20-O20]">
      <seq>cttgcagaagagtaactcgtcggagaaacagcatcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagctcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129280" stop="127071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="128980" g_stop="128897" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="111" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="174" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127369" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="201" r_length="27" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-E356354" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>201</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356354" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="128980" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127369"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTT</genome_strand>
        <mrna_strand>CTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E541736" ref_strand="+" ref_description="SGN-E541736 [TUS-62-K22]">
      <seq>gcgaaatagagcttcttctgcggcttgtccagaagacttgaggaaaatttcgccttctgaacctaaggagagagattccactctagataccgaacctgaaagtggaatttcaaatagcaagaagactgtgttgaatggagggggtgatcactttgaggatctttcagttggagggtgtaataatatagcaaattcaggtagatccatcatagatatggataatgaggatgctatatgtaagcgtactagagcacgctactcacttgctagctttacacttgatgaacttgagacatttcttcaggagactgatgacgaggatgatcttcagaatgtcaacgatgaagaagagtacaggaagtttcttgcagctgttttacatggtggagatggaaattctggaaatatacaagataatgaaaatgttgatgatgaagatgaagacaatgatgcagattttgagcttgaaattgaggaggcattggagagtgaccttgatgaacatctgaaggatgatattgaagagtacgaggctgttggtcgaagacctaagactaggcaaaccaggcgccaaagatcttctcttgagaacaagaataagattttaggattgtcagataggccactacgccctttgttaccatatcttcccagttctccttattccgtacatggtgcaaaaggcatgatgcctccatccagtctgctgcctgcaaatgatggctttgtgaatggatttacaccccatcagataggacaattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132076" stop="133442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132376" g_stop="133142" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E541736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132376" e_stop="133142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</genome_strand>
        <mrna_strand>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E299734" ref_strand="+" ref_description="SGN-E299734 [cLEW-1-F8]">
      <seq>cgaaatagagcttcttctgcggcttgtccagaagacttgaggaaaatttcgccttctgaacctaaggagagagattccactctagataccgaacctgaaagtggaatttcaaatagcaagaagactgtgttgaatggagggggtgatcactttgaggatctttcagttggagggtgtaataatatagcaaattcaggtagatccatcatagatatggataatgaggatgctatatgtaagcgtactagagcacgctactcacttgctagctttacacttgatgaacttgagacatttcttcaggagactgatgacgaggatgatcttcagaatgtcaacgatgaagaagagtacaggaagtttcttgcagctgttttacatggtggagatggaaattctggaaatatacaagataatgaaaatgttgatgatgaagatgaagacaatgatgcagattttgagcttgaaattgaggaggcattggagagtgaccttgatgaacatctgaaggatgatattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132077" stop="133196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132377" g_stop="132896" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-E299734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132377" e_stop="132896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTG</genome_strand>
        <mrna_strand>CGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>240</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6872" PGL_stop="14623"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6909" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9304"/>
            <exon e_start="12224" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13066" e_stop="13193"/>
            <exon e_start="13283" e_stop="13411"/>
            <exon e_start="13489" e_stop="13556"/>
            <exon e_start="13638" e_stop="14062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.921"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6909" e_stop="7088" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.921">
            <gDNA_exon_boundary e_start="9028" e_stop="9304" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="9305" i_stop="12223" i_length="2919"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12224" e_stop="12537" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
            <gDNA_exon_boundary e_start="13066" e_stop="13193" e_length="128"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13283" e_stop="13411" e_length="129"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13489" e_stop="13556" e_length="68"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="13638" e_stop="14062" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6927" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8885" stop="8922"/>
              <exon start="9028" stop="9304"/>
              <exon start="12224" stop="12267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12237" stop="12537"/>
              <exon start="12622" stop="12760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12537"/>
              <exon start="12622" stop="12745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12242" stop="12537"/>
              <exon start="12622" stop="12776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12537"/>
              <exon start="12622" stop="12661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364158" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="13066" stop="13141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12401" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12439" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12496" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12516" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12519" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12905" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="14042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12944" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="14054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13099" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13143" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13340" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13556"/>
              <exon start="13638" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13556"/>
              <exon start="13638" stop="14032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13641" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13663" stop="14041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : L  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13066" stop="13193"/>
                    <exon start="13283" stop="13411"/>
                    <exon start="13489" stop="13556"/>
                    <exon start="13638" stop="13854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6911" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9225" stop="9304"/>
                    <exon start="12224" stop="12350"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYYYILKRVCEREESLNNIWKFLYNSIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6872" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9304"/>
            <exon e_start="12224" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13066" e_stop="13193"/>
            <exon e_start="13283" e_stop="13411"/>
            <exon e_start="13489" e_stop="13556"/>
            <exon e_start="13638" e_stop="14062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="0.997"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.972"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="6872" e_stop="7258" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="9028" e_stop="9304" e_length="277"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="9305" i_stop="12223" i_length="2919"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12224" e_stop="12537" e_length="314"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="13066" e_stop="13193" e_length="128"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13283" e_stop="13411" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13489" e_stop="13556" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13638" e_stop="14062" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6872" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6993" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8885" stop="8922"/>
              <exon start="9028" stop="9304"/>
              <exon start="12224" stop="12267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12237" stop="12537"/>
              <exon start="12622" stop="12760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12537"/>
              <exon start="12622" stop="12745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12242" stop="12537"/>
              <exon start="12622" stop="12776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364158" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330137" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12251" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363515" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364476" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="12622" stop="12770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12254" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12254" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12256" stop="12537"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E360331" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E332363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12281" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332019" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12283" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12284" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12285" stop="12537"/>
              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12286" stop="12537"/>
              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12290" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12290" stop="12537"/>
              <exon start="12622" stop="12771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="12537"/>
              <exon start="12622" stop="12746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12293" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12295" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12296" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12302" stop="12537"/>
              <exon start="12622" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="12537"/>
              <exon start="12622" stop="12712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12317" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12401" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12439" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12496" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12516" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12519" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12905" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="14042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12944" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="14054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13099" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13143" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13340" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13556"/>
              <exon start="13638" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13556"/>
              <exon start="13638" stop="14032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13641" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13663" stop="14041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> Q  Y  E  E  E  K  K  K  L  H  Q  K  R  A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L  G  T  S  F  L  F  A  T  S  L  F  L  I  I  M  *  Y  *  D  L  I  F  V  F  V  L  L  L  L  D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </first_frame>
            <second_frame>  N  T  K  K  K  R  K  N  Y  T  K  K  E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  V  L  H  F  C  L  L  L  P  Y  F  L  *  L  C  D  I  E  T  *  F  L  F  L  F  F  F  S  *  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </second_frame>
            <third_frame>   I  R  R  R  K  E  K  I  T  P  K  K  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R  Y  F  I  S  V  C  Y  F  L  I  S  Y  N  Y  V  I  L  R  L  N  F  C  F  C  S  S  S  L  R  Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : L  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13066" stop="13193"/>
                    <exon start="13283" stop="13411"/>
                    <exon start="13489" stop="13556"/>
                    <exon start="13638" stop="13854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6872" stop="7135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYEEEKKKLHQKRAKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLGTSFLFATSLFLIIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7142" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIFVFVLLLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9225" stop="9304"/>
                    <exon start="12224" stop="12350"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYYYILKRVCEREESLNNIWKFLYNSIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="6909" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9304"/>
            <exon e_start="12224" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13066" e_stop="13193"/>
            <exon e_start="13283" e_stop="13411"/>
            <exon e_start="13489" e_stop="13556"/>
            <exon e_start="13638" e_stop="14032"/>
            <exon e_start="14605" e_stop="14623"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.921"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.684"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6909" e_stop="7088" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.921">
            <gDNA_exon_boundary e_start="9028" e_stop="9304" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="9305" i_stop="12223" i_length="2919"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12224" e_stop="12537" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73"/>
          </intron>
          <exon e_serial="8" e_score="0.992">
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              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12286" stop="12537"/>
              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12290" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12290" stop="12537"/>
              <exon start="12622" stop="12771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="12537"/>
              <exon start="12622" stop="12746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12293" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12295" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12296" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13357"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12297" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12302" stop="12537"/>
              <exon start="12622" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="12537"/>
              <exon start="12622" stop="12712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12317" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13141"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12401" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364555" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12439" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12496" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12516" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12519" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13512"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362320" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13099" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13143" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234602" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13159" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13340" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13556"/>
              <exon start="13638" stop="14032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13666" stop="14032"/>
              <exon start="14605" stop="14623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225837" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTC : CAAAAGCAAAAAAGTAATG</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S :   K  S  K  K  V  M </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : L  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A   : P  K  A  K  K  *   </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  :  Q  K  Q  K  S  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13066" stop="13193"/>
                    <exon start="13283" stop="13411"/>
                    <exon start="13489" stop="13556"/>
                    <exon start="13638" stop="13854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6911" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9225" stop="9304"/>
                    <exon start="12224" stop="12350"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYYYILKRVCEREESLNNIWKFLYNSIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="6909" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9304"/>
            <exon e_start="12224" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13283" e_stop="13411"/>
            <exon e_start="13489" e_stop="13556"/>
            <exon e_start="13638" e_stop="14062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.089" e_score="0.921"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.952"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6909" e_stop="7088" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.921">
            <gDNA_exon_boundary e_start="9028" e_stop="9304" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.089">
            <gDNA_intron_boundary i_start="9305" i_stop="12223" i_length="2919"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="12224" e_stop="12537" e_length="314"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="7" e_score="0.976">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="7" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12993" i_stop="13282" i_length="290"/>
          </intron>
          <exon e_serial="8" e_score="0.952">
            <gDNA_exon_boundary e_start="13283" e_stop="13411" e_length="129"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13489" e_stop="13556" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="13638" e_stop="14062" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6927" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8885" stop="8922"/>
              <exon start="9028" stop="9304"/>
              <exon start="12224" stop="12267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12226" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13283" stop="13408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359846" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12237" stop="12537"/>
              <exon start="12622" stop="12760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365045" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12238" stop="12537"/>
              <exon start="12622" stop="12745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12242" stop="12537"/>
              <exon start="12622" stop="12776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12248" stop="12537"/>
              <exon start="12622" stop="12765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12537"/>
              <exon start="12622" stop="12661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12250" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12251" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12251" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12251" stop="12537"/>
              <exon start="12622" stop="12743"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12252" stop="12537"/>
              <exon start="12622" stop="12770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12254" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12254" stop="12537"/>
              <exon start="12622" stop="12770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12254" stop="12537"/>
              <exon start="12622" stop="12746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360212" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12256" stop="12537"/>
              <exon start="12622" stop="12746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12260" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12263" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12264" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329445" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12273" stop="12537"/>
              <exon start="12622" stop="12772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332363" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12955"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12926"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362249" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361476" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365131" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12748"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12280" stop="12537"/>
              <exon start="12622" stop="12630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12282" stop="12537"/>
              <exon start="12622" stop="12717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12283" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12285" stop="12537"/>
              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360058" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12286" stop="12537"/>
              <exon start="12622" stop="12759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12928"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361523" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12288" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363130" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12290" stop="12537"/>
              <exon start="12622" stop="12771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362378" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12291" stop="12537"/>
              <exon start="12622" stop="12769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12292" stop="12537"/>
              <exon start="12622" stop="12746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12295" stop="12537"/>
              <exon start="12622" stop="12778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12302" stop="12537"/>
              <exon start="12622" stop="12679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12303" stop="12537"/>
              <exon start="12622" stop="12712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363954" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12439" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12954"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361623" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12537" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13340" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360881" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13869"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13556"/>
              <exon start="13638" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228960" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13551" stop="13556"/>
              <exon start="13638" stop="14032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13641" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228864" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13663" stop="14041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373635" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : TATATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   I  F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : L  Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : G  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Y  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13283" stop="13305"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAGTRKGLE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12984" stop="12992"/>
                    <exon start="13283" stop="13411"/>
                    <exon start="13489" stop="13556"/>
                    <exon start="13638" stop="13854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTQELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6911" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9225" stop="9304"/>
                    <exon start="12224" stop="12350"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFYYYILKRVCEREESLNNIWKFLYNSIFKYQKEKKNQKKKRRLGLKYNNLCFFLNFLCCQILIQNHG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="6909" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9304"/>
            <exon e_start="11407" e_stop="11442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.996"/>
          <exon-only e_score="0.722"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6909" e_stop="7088" e_length="180"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="9028" e_stop="9304" e_length="277"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9305" i_stop="11406" i_length="2102"/>
          </intron>
          <exon e_serial="5" e_score="0.722">
            <gDNA_exon_boundary e_start="11407" e_stop="11442" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6927" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7069" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9304"/>
              <exon start="11407" stop="11442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200219" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTC : CAAAAAAGAGAAAAAACAAAGCAAATCGAATTTATT</gDNA_template>
            <first_frame> E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S :   K  K  E  K  K  Q  S  K  S  N  L   </first_frame>
            <second_frame>  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I   : P  K  K  R  K  N  K  A  N  R  I  Y  </second_frame>
            <third_frame>   A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  :  Q  K  R  E  K  T  K  Q  I  E  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6911" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="6894" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6894" e_stop="7088" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="9028" e_stop="9322" e_length="295"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6894" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6909" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6927" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349342" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAACAATATATGGAAATTTCTTTATAATTCACTTTCCAAAATCTTTGT</gDNA_template>
            <first_frame> N  Y  T  K  K  E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N  N  I  W  K  F  L  Y  N  S  L  S  K  I  F   </first_frame>
            <second_frame>  I  T  P  K  K  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L  T  I  Y  G  N  F  F  I  I  H  F  P  K  S  L  </second_frame>
            <third_frame>   L  H  Q  K  R  A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  Q  Y  M  E  I  S  L  *  F  T  F  Q  N  L  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6896" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LHQKRAKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10617" PGL_stop="9272"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10617" e_stop="9272"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="10617" e_stop="9272" e_length="1346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10617" stop="9898"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10617" stop="10009"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619166" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10527" stop="9968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10525" stop="9907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10499" stop="10106"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10455" stop="9854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10380" stop="9824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10378" stop="9729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10171" stop="9516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10170" stop="9647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273408" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10144" stop="9522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="9274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9448" stop="9272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E226260" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAAACTTCAGACTTCATTAGCGATCAATATATATCTCAACAAAGCGATCAAAGTTAACAATGGAGTATCCATTATACGGAAGCTATTGGCCCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAAGA</gDNA_template>
            <first_frame> Q  K  L  Q  T  S  L  A  I  N  I  Y  L  N  K  A  I  K  V  N  N  G  V  S  I  I  R  K  L  L  A  P  V  S  S  P  W  L  F  L  K  H  E  R  N  S  S  A  I  D  S  P  E  T  C  R  N  Q  A  G  L  Q  G  C  S  D  S  G  P  F  R  *  F  G  S  R  A  V  R  F  G  L  G  D  K  E  T  *  A  G  *  V  R  F  S  V  E  D  P  E  G  I  Q  R  L  F  G  E  K  K  R  E  E  N  Q  V  D  T  K  R  G  G  R  C  *  A  E  A  F  V  *  R  N  G  G  V  D  L  *  R  *  K  G  K  V  A  G  E  *  D  A  D  V  S  A  F  Q  V  G  L  H  S  W  S  *  F  R  C  *  G  V  Q  K  G  C  D  *  K  G  H  L  F  A  R  E  S  R  L  H  C  C  C  C  K  S  N  C  S  *  R  G  E  S  I  R  *  T  L  *  T  S  Q  S  D  R  R  H  P  Q  F  N  R  K  T  G  *  R  W  K  I  D  K  S  E  *  T  L  S  S  V  R  A  E  C  G  C  R  N  S  S  S  I  K  *  *  E  N  T  H  R  G  *  T  R  C  S  T  A  E  *  E  A  W  R  I  A  G  G  E  A  G  N  G  L  S  N  A  R  M  C  G  G  K  C  G  E  R  *  S  W  G  F  D  R  S  S  *  G  C  E  *  E  *  E  *  E  *  N  K  V  T  Q  V  *  R  G  R  R  E  *  K  K  P  R  V  V  G  E  N  G  G  E  E  *  E  Y  D  E  N  D  D  *  T  V  P  Q  K  *  T  T  N  T  N  A  E  F  A  G  T  E  S  G  S  I  R  E  N  F  L  M  *  *  V  E  D  K  E  E  E  E  A  H  C  L  I  L  S  V  A  K  M  S  *  *  I  F  F  F  W  C  F  W  A  C  F  L  W  L  L  Y  F  T  L  *  Y  W  N  V  L  I  G  K  Q  R  F  W  K  V  N  Y  K  E  I  S  I  Y  C  *   </first_frame>
            <second_frame>  K  N  F  R  L  H  *  R  S  I  Y  I  S  T  K  R  S  K  L  T  M  E  Y  P  L  Y  G  S  Y  W  P  Q  S  A  R  P  G  Y  S  S  N  M  R  G  I  P  V  Q  S  I  H  Q  K  P  A  G  I  K  Q  A  S  K  V  V  Q  I  P  V  H  F  V  S  S  D  P  E  R  S  V  L  A  S  A  T  K  K  P  E  P  D  R  S  G  S  A  L  K  I  Q  K  V  F  R  G  F  L  V  R  K  S  V  K  K  I  K  L  I  R  K  E  V  E  D  V  E  R  K  L  L  C  R  E  T  A  E  L  I  C  R  D  E  R  E  R  L  R  V  N  E  T  L  M  S  L  L  F  K  L  D  S  I  R  G  V  D  S  G  V  R  E  C  R  K  A  V  I  R  K  A  I  Y  L  Q  E  K  V  D  C  I  V  A  A  A  N  Q  I  A  A  E  E  E  N  Q  S  D  E  L  S  E  P  V  N  Q  T  G  D  I  P  N  S  T  G  K  Q  D  E  D  G  K  L  T  N  Q  N  E  L  C  H  L  S  E  Q  S  V  D  V  E  T  Q  A  A  S  N  D  E  K  T  P  I  E  G  E  H  D  V  A  P  L  N  E  K  R  G  G  L  Q  E  V  K  Q  E  T  D  C  P  M  L  E  C  V  E  E  S  V  E  R  G  E  V  G  D  L  I  E  V  V  E  D  V  N  E  N  E  N  E  N  E  T  R  S  H  K  F  E  G  G  E  E  S  R  R  N  R  E  L  L  E  K  M  V  E  K  N  E  N  M  M  R  M  M  T  E  L  C  H  K  N  E  L  Q  T  R  M  L  N  S  L  A  Q  R  V  D  Q  L  E  K  T  F  L  C  D  R  L  K  T  K  K  K  K  R  H  T  A  *  F  F  L  *  Q  K  C  H  S  R  F  F  F  F  G  V  S  G  P  V  S  C  G  F  Y  I  S  P  C  D  I  G  M  Y  *  L  V  N  K  D  F  G  K  *  I  I  K  K  F  P  Y  I  V  K  </second_frame>
            <third_frame>   K  T  S  D  F  I  S  D  Q  Y  I  S  Q  Q  S  D  Q  S  *  Q  W  S  I  H  Y  T  E  A  I  G  P  S  Q  L  A  L  A  I  P  Q  T  *  E  E  F  Q  C  N  R  F  T  R  N  L  P  E  S  S  R  P  P  R  L  F  R  F  R  S  I  S  L  V  R  I  P  S  G  P  F  W  P  R  R  Q  R  N  L  S  R  I  G  P  V  Q  R  *  R  S  R  R  Y  S  E  A  F  W  *  E  K  A  *  R  K  S  S  *  Y  E  K  R  W  K  M  L  S  G  S  F  C  V  E  K  R  R  S  *  F  V  E  M  K  G  K  G  C  G  *  M  R  R  *  C  L  C  F  S  S  W  T  P  F  V  E  L  I  P  V  L  G  S  A  E  R  L  *  L  E  R  P  S  I  C  K  R  K  S  T  A  L  L  L  L  Q  I  K  L  Q  L  K  R  R  I  N  P  M  N  S  L  N  Q  S  I  R  P  E  T  S  P  I  Q  Q  E  N  R  M  K  M  E  N  *  Q  I  R  M  N  F  V  I  C  Q  S  R  V  W  M  *  K  L  K  Q  H  Q  M  M  R  K  H  P  *  R  V  N  T  M  *  H  R  *  M  R  S  V  E  D  C  R  R  *  S  R  K  R  T  V  Q  C  S  N  V  W  R  K  V  W  R  E  V  K  L  G  I  *  S  K  *  L  R  M  *  M  R  M  R  M  R  M  K  Q  G  H  T  S  L  K  G  E  K  R  V  E  E  T  E  S  C  W  R  K  W  W  R  R  M  R  I  *  *  E  *  *  L  N  C  A  T  K  M  N  Y  K  H  E  C  *  I  R  W  H  R  E  W  I  N  *  R  K  L  S  Y  V  I  G  *  R  Q  R  R  R  R  G  T  L  L  D  S  F  C  S  K  N  V  I  V  D  F  F  F  L  V  F  L  G  L  F  L  V  A  F  I  F  H  P  V  I  L  E  C  T  D  W  *  T  K  I  L  E  S  E  L  *  R  N  F  H  I  L  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10595" stop="9435"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1158</number_coding_nucleotides>
                  <number_encoded_amino_acids>386</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSIYISTKRSKLTMEYPLYGSYWPQSARPGYSSNMRGIPVQSIHQKPAGIKQASKVVQIPVHFVSSDPERSVLASATKKPEPDRSGSALKIQKVFRGFLVRKSVKKIKLIRKEVEDVERKLLCRETAELICRDERERLRVNETLMSLLFKLDSIRGVDSGVRECRKAVIRKAIYLQEKVDCIVAAANQIAAEEENQSDELSEPVNQTGDIPNSTGKQDEDGKLTNQNELCHLSEQSVDVETQAASNDEKTPIEGEHDVAPLNEKRGGLQEVKQETDCPMLECVEESVERGEVGDLIEVVEDVNENENENETRSHKFEGGEESRRNRELLEKMVEKNENMMRMMTELCHKNELQTRMLNSLAQRVDQLEKTFLCDRLKTKKKKRHTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="15904" PGL_stop="17041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15904" e_stop="17041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.959"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.959">
            <gDNA_exon_boundary e_start="15904" e_stop="17041" e_length="1138"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15904" stop="16289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15928" stop="16532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E326764" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16242" stop="16799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16477" stop="17041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320939" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</gDNA_template>
            <first_frame> K  K  R  G  R  K  K  K  R  R  K  K  R  K  G  W  F  L  E  R  I  F  F  L  H  L  V  I  E  K  K  R  I  I  E  R  V  Y  S  *  E  D  F  T  I  V  *  A  H  L  Y  I  Y  *  S  *  I  K  N  R  R  I  V  R  F  L  I  I  I  *  I  R  S  C  V  V  E  G  H  P  F  A  R  F  V  S  N  S  L  P  R  R  R  *  N  P  F  F  F  F  L  F  R  C  C  H  S  T  L  L  T  I  F  F  L  F  C  F  L  V  *  H  R  F  E  S  I  L  D  S  I  L  A  F  L  V  E  P  *  R  L  K  T  L  F  P  S  Q  P  T  P  *  K  D  V  Q  V  E  S  K  T  I  G  E  L  L  E  V  A  D  C  R  H  L  A  A  I  F  V  L  K  L  C  I  W  F  I  H  N  I  Y  T  V  I  Q  V  K  N  P  Q  E  A  Q  I  Q  N  L  N  *  *  Q  E  N  C  V  S  G  K  E  F  S  T  S  E  S  *  K  T  G  L  Y  T  A  C  I  H  R  Y  T  E  M  I  Y  Y  I  Y  A  Q  K  I  *  L  A  G  E  R  T  R  M  L  V  L  T  K  I  R  D  *  A  I  N  T  D  A  G  C  S  P  Y  T  L  V  Y  I  I  G  R  R  Y  I  I  V  K  Q  V  *  K  M  I  Q  V  Q  I  C  R  D  D  M  R  N  I  G  E  I  A  E  N  A  Y  I  N  K  C  R  A  Q  K  V  Q  N  G  C  *  Y  T  P  Y  T  T  V  Y  I  F  C  I  L  Y  I  S  F  F  R  K  L  G  *  G  P  S  V  P  F  Y  Q  Q  A  Q  *  P  F  V  F  T  G  F  F  F  K  K  </first_frame>
            <second_frame>  R  K  E  G  E  R  K  R  E  E  K  K  E  R  D  G  F  W  R  E  F  F  F  Y  I  L  *  *  K  R  K  E  L  L  K  E  F  I  H  R  K  I  L  Q  *  F  K  H  T  Y  I  S  I  E  V  E  L  K  T  E  G  L  *  G  F  *  L  S  F  E  F  E  V  V  *  W  K  V  I  P  L  L  V  S  S  L  T  R  C  P  E  E  G  E  I  L  F  F  F  F  F  L  D  V  V  I  P  P  C  *  L  F  F  F  C  F  V  F  L  C  D  I  D  S  S  P  F  W  I  P  F  L  H  S  S  L  S  H  K  G  S  K  H  F  S  R  V  S  Q  P  P  E  R  M  Y  R  S  K  A  K  P  L  E  S  C  W  K  *  R  I  A  G  I  W  L  R  F  L  F  *  S  C  V  S  G  L  Y  T  I  Y  T  L  *  Y  R  S  K  I  H  R  R  P  K  F  K  I  *  I  D  D  R  K  I  A  F  L  E  R  S  F  Q  L  P  K  V  E  K  Q  A  Y  I  Q  P  V  Y  T  D  I  Q  R  *  Y  T  I  Y  M  L  K  K  Y  D  W  Q  G  N  V  H  G  C  L  F  *  L  K  F  G  I  R  Q  L  I  R  T  Q  G  A  A  R  I  H  *  Y  T  L  S  G  D  D  I  *  L  L  N  R  F  K  K  *  Y  R  Y  K  Y  A  E  T  I  C  E  I  *  G  K  *  L  K  M  R  I  *  I  N  A  G  L  K  R  S  K  M  D  A  D  I  H  R  I  Q  Q  Y  T  S  F  V  Y  F  I  S  P  F  S  G  N  W  A  K  A  L  Q  F  P  F  I  N  R  P  N  N  H  L  F  L  Q  V  F  F  L  K  K </second_frame>
            <third_frame>   E  K  R  E  K  E  K  E  K  K  K  K  K  G  M  V  F  G  E  N  F  F  F  T  S  C  D  R  K  E  K  N  Y  *  K  S  L  F  I  G  R  F  Y  N  S  L  S  T  P  I  Y  L  L  K  L  N  *  K  Q  K  D  C  E  V  F  D  Y  H  L  N  S  K  L  C  S  G  R  S  S  L  C  S  F  R  L  *  L  A  A  P  K  K  V  K  S  F  F  F  F  S  F  *  M  L  S  F  H  L  A  N  Y  F  F  F  V  L  F  S  C  V  T  S  I  R  V  H  F  G  F  H  S  C  I  P  R  *  A  I  K  A  Q  N  T  F  P  E  S  A  N  P  L  K  G  C  T  G  R  K  Q  N  H  W  R  A  A  G  S  S  G  L  Q  A  F  G  C  D  F  C  F  E  V  V  Y  L  V  Y  T  Q  Y  I  H  C  D  T  G  Q  K  S  T  G  G  P  N  S  K  S  E  L  M  T  G  K  L  R  F  W  K  G  V  F  N  F  R  K  L  K  N  R  L  I  Y  S  L  Y  T  Q  I  Y  R  D  D  I  L  Y  I  C  S  K  N  M  I  G  R  G  T  Y  T  D  A  C  F  N  *  N  S  G  L  G  N  *  Y  G  R  R  V  Q  P  V  Y  I  S  I  H  Y  R  A  T  I  Y  N  C  *  T  G  L  K  N  D  T  G  T  N  M  Q  R  R  Y  A  K  Y  R  G  N  S  *  K  C  V  Y  K  *  M  Q  G  S  K  G  P  K  W  M  L  I  Y  T  V  Y  N  S  I  H  L  L  Y  T  L  Y  L  L  F  Q  E  I  G  L  R  P  F  S  S  L  L  S  T  G  P  I  T  I  C  F  Y  R  F  F  F  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16314" stop="16694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIKAQNTFPESANPLKGCTGRKQNHWRAAGSSGLQAFGCDFCFEVVYLVYTQYIHCDTGQKSTGGPNSKSELMTGKLRFWKGVFNFRKLKNRLIYSLYTQIYRDDILYICSKNMIGRGTYTDACFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="16799" PGL_stop="16242"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16799" e_stop="16242"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="16799" e_stop="16242" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16799" stop="16242"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCATTTTTTAAACCTGTTTAACAATTATATATCGTCGCCCGATAATGTATACTAATGTATACGGGCTGCACCCTGCGTCCGTATTAATTGCCTAATCCCGAATTTTAGTTAAAACAAGCATCCGTGTACGTTCCCCTGCCAATCATATTTTTTGAGCATATATATAGTATATCATCTCTGTATATCTGTGTATACAGGCTGTATATAAGCCTGTTTTTCAACTTTCGGAAGTTGAAAACTCCTTTCCAGAAACGCAATTTTCCTGTCATCAATTCAGATTTTGAATTTGGGCCTCCTGTGGATTTTTGACCTGTATCACAGTGTATATATTGTGTATAAACCAGATACACAACTTCAAAACAAAAATCGCAGCCAAATGCCTGCAATCCGCTACTTCCAGCAGCTCTCCAATGGTTTTGCTTTCGACCTGTACATCCTTTCAGGGGGTTGGCTGACTCGGGAAAAGTGTTTTGAGCCTTTATGGCTCAACGAGGAATGCAAGAATGGAATCCAAAATGGACTCGAATCGATGTCACACAAGAAAACAAAACAAAAAA</gDNA_template>
            <first_frame> I  I  F  *  T  C  L  T  I  I  Y  R  R  P  I  M  Y  T  N  V  Y  G  L  H  P  A  S  V  L  I  A  *  S  R  I  L  V  K  T  S  I  R  V  R  S  P  A  N  H  I  F  *  A  Y  I  *  Y  I  I  S  V  Y  L  C  I  Q  A  V  Y  K  P  V  F  Q  L  S  E  V  E  N  S  F  P  E  T  Q  F  S  C  H  Q  F  R  F  *  I  W  A  S  C  G  F  L  T  C  I  T  V  Y  I  L  C  I  N  Q  I  H  N  F  K  T  K  I  A  A  K  C  L  Q  S  A  T  S  S  S  S  P  M  V  L  L  S  T  C  T  S  F  Q  G  V  G  *  L  G  K  S  V  L  S  L  Y  G  S  T  R  N  A  R  M  E  S  K  M  D  S  N  R  C  H  T  R  K  Q  N  K  K </first_frame>
            <second_frame>  S  F  F  K  P  V  *  Q  L  Y  I  V  A  R  *  C  I  L  M  Y  T  G  C  T  L  R  P  Y  *  L  P  N  P  E  F  *  L  K  Q  A  S  V  Y  V  P  L  P  I  I  F  F  E  H  I  Y  S  I  S  S  L  Y  I  C  V  Y  R  L  Y  I  S  L  F  F  N  F  R  K  L  K  T  P  F  Q  K  R  N  F  P  V  I  N  S  D  F  E  F  G  P  P  V  D  F  *  P  V  S  Q  C  I  Y  C  V  *  T  R  Y  T  T  S  K  Q  K  S  Q  P  N  A  C  N  P  L  L  P  A  A  L  Q  W  F  C  F  R  P  V  H  P  F  R  G  L  A  D  S  G  K  V  F  *  A  F  M  A  Q  R  G  M  Q  E  W  N  P  K  W  T  R  I  D  V  T  Q  E  N  K  T  K   </second_frame>
            <third_frame>   H  F  L  N  L  F  N  N  Y  I  S  S  P  D  N  V  Y  *  C  I  R  A  A  P  C  V  R  I  N  C  L  I  P  N  F  S  *  N  K  H  P  C  T  F  P  C  Q  S  Y  F  L  S  I  Y  I  V  Y  H  L  C  I  S  V  Y  T  G  C  I  *  A  C  F  S  T  F  G  S  *  K  L  L  S  R  N  A  I  F  L  S  S  I  Q  I  L  N  L  G  L  L  W  I  F  D  L  Y  H  S  V  Y  I  V  Y  K  P  D  T  Q  L  Q  N  K  N  R  S  Q  M  P  A  I  R  Y  F  Q  Q  L  S  N  G  F  A  F  D  L  Y  I  L  S  G  G  W  L  T  R  E  K  C  F  E  P  L  W  L  N  E  E  C  K  N  G  I  Q  N  G  L  E  S  M  S  H  K  K  T  K  Q  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16563" stop="16243"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLLSRNAIFLSSIQILNLGLLWIFDLYHSVYIVYKPDTQLQNKNRSQMPAIRYFQQLSNGFAFDLYILSGGWLTREKCFEPLWLNEECKNGIQNGLESMSHKKTKQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17057" PGL_stop="17679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17057" e_stop="17679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="17057" e_stop="17679" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17057" stop="17679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356241" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTATTTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</gDNA_template>
            <first_frame> *  I  D  Y  D  R  W  A  K  A  Q  L  D  G  F  G  Q  S  N  P  S  S  N  I  F  L  S  L  F  I  I  C  L  N  *  L  V  F  W  *  N  F  N  N  L  L  K  S  S  H  F  S  L  F  *  I  L  L  F  Y  S  L  L  S  P  F  S  F  P  *  I  N  S  S  K  H  F  P  L  E  K  K  K  *  K  E  *  N  T  K  Y  Q  N  E  F  S  L  L  L  S  *  K  F  L  F  *  K  S  F  S  Q  I  A  G  Q  P  Q  V  S  G  H  P  E  G  L  T  P  S  R  D  V  H  *  S  S  N  P  F  Q  L  I  F  N  L  F  F  K  S  F  E  V  F  L  D  F  I  K  N  Q  V  A  T  P  I  L  K  V  G  F  S  *  T  I  R  L  I  D  F  S  K  P  S  Q  F  F  L  I  S  P  I  K  H  K  Q  *  Y  F  F  K  *  N  I  K  Y  Y  F  A   </first_frame>
            <second_frame>  K  *  I  M  T  G  G  P  K  P  N  W  M  D  L  G  N  Q  T  Q  V  Q  I  F  F  S  L  Y  L  L  F  V  *  I  N  *  C  F  G  R  I  L  I  I  S  *  R  V  A  I  F  H  Y  F  K  F  Y  Y  F  I  H  F  Y  H  H  L  V  F  L  K  L  I  P  L  N  I  S  L  *  K  K  K  S  K  K  N  E  I  Q  N  I  K  M  N  F  L  F  Y  L  V  K  N  F  Y  F  K  S  H  L  V  K  S  P  V  N  R  K  L  A  G  I  P  R  A  *  H  L  L  E  M  Y  I  E  V  R  T  L  F  N  *  F  L  I  C  F  L  N  L  L  K  F  F  L  I  L  S  K  I  K  W  R  L  Q  F  *  R  S  V  F  L  K  Q  *  D  *  L  I  F  R  N  L  V  N  F  F  S  F  L  P  L  N  I  N  S  S  I  F  L  S  E  T  S  S  I  T  L  L  </second_frame>
            <third_frame>   N  R  L  *  Q  V  G  Q  S  P  I  G  W  I  W  A  I  K  P  K  F  K  Y  F  S  L  F  I  Y  Y  L  F  E  L  I  S  V  L  V  E  F  *  *  S  P  K  E  *  P  F  F  I  I  L  N  F  T  I  L  F  T  F  I  T  I  *  F  S  L  N  *  F  L  *  T  F  P  F  R  K  K  K  V  K  R  M  K  Y  K  I  S  K  *  I  F  S  F  T  *  L  K  I  F  I  L  K  V  I  *  S  N  R  R  S  T  A  S  *  R  A  S  R  G  P  N  T  F  S  R  C  T  L  K  F  E  P  F  S  I  D  F  *  S  V  F  *  I  F  *  S  F  S  *  F  Y  Q  K  S  S  G  D  S  N  F  E  G  R  F  F  L  N  N  K  I  N  *  F  F  E  T  *  S  I  F  S  H  F  S  H  *  T  *  T  V  V  F  F  *  V  K  H  Q  V  L  L  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="27052" PGL_stop="28421"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27052" e_stop="27255"/>
            <exon e_start="27391" e_stop="27498"/>
            <exon e_start="28079" e_stop="28421"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.756" acc_prob="0.996" e_score="0.946"/>
          <exon-intron don_prob="0.986" acc_prob="0.975" e_score="0.991"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="27052" e_stop="27255" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.756" acc_prob="0.996">
            <gDNA_intron_boundary i_start="27256" i_stop="27390" i_length="135"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="27391" e_stop="27498" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.975">
            <gDNA_intron_boundary i_start="27499" i_stop="28078" i_length="580"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="28079" e_stop="28421" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27052" stop="27255"/>
              <exon start="27391" stop="27498"/>
              <exon start="28079" stop="28421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E461706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27052" stop="27255"/>
              <exon start="27391" stop="27498"/>
              <exon start="28079" stop="28365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCTCACTACCTCCAATCACATGTACTCTGCCTACATGATGATGTAAATTCTGGTTTTCTTTAGTCTTCTTTTCTGTCCTCAGTTCAAGGCTATGTAGCTAACGTAGCCGCAAACACCACTCTGTAGAGCAGACTGGATGATGAGAATATGTTAGCTGATTCTGACTCAACATCAGCACCCTTAGCTGAGATACAAAATTTTAC : GTTATTTGTTAGTTCATGGAATGTTGGAGGCATTGCACCACCAAACGACTTGAACATGGAGGAATTGCTTGATACTCGAAACAACTTGGCTGATATTTATGTTCTCGG : GTTTCAAGAAATTGTACCGCTGAATGCTGGAAGTGTTATAGTGCCAGAGAATACAACTATATGCATGCAATGGAATTCTCTTATTAGCACAGCTCTTAACAAGTTAGATGTCAACAACATAACCCTTCAGGAGGCAGAGGAAGAAGAAAGTGTAAAAGTTTACCCACTAAAGAAAGGGAGTTCCTTGAAGTTCAATGTAGAAAACTCAACACAATTTGAATGCATAATTAGCAAGCAAATGGTGGGAATATTTATTACAGTATGGGCACGGTCTCCACTCCTTCCCTATATCAGTCATACAAGTGTCTCCTGTGTAGGCTGTGGTATTTTTGGCTACCTTGGA</gDNA_template>
            <first_frame> L  S  L  P  P  I  T  C  T  L  P  T  *  *  C  K  F  W  F  S  L  V  F  F  S  V  L  S  S  R  L  C  S  *  R  S  R  K  H  H  S  V  E  Q  T  G  *  *  E  Y  V  S  *  F  *  L  N  I  S  T  L  S  *  D  T  K  F  Y  :  V  I  C  *  F  M  E  C  W  R  H  C  T  T  K  R  L  E  H  G  G  I  A  *  Y  S  K  Q  L  G  *  Y  L  C  S  R  :  V  S  R  N  C  T  A  E  C  W  K  C  Y  S  A  R  E  Y  N  Y  M  H  A  M  E  F  S  Y  *  H  S  S  *  Q  V  R  C  Q  Q  H  N  P  S  G  G  R  G  R  R  K  C  K  S  L  P  T  K  E  R  E  F  L  E  V  Q  C  R  K  L  N  T  I  *  M  H  N  *  Q  A  N  G  G  N  I  Y  Y  S  M  G  T  V  S  T  P  S  L  Y  Q  S  Y  K  C  L  L  C  R  L  W  Y  F  W  L  P  W  </first_frame>
            <second_frame>  S  H  Y  L  Q  S  H  V  L  C  L  H  D  D  V  N  S  G  F  L  *  S  S  F  L  S  S  V  Q  G  Y  V  A  N  V  A  A  N  T  T  L  *  S  R  L  D  D  E  N  M  L  A  D  S  D  S  T  S  A  P  L  A  E  I  Q  N  F  T :   L  F  V  S  S  W  N  V  G  G  I  A  P  P  N  D  L  N  M  E  E  L  L  D  T  R  N  N  L  A  D  I  Y  V  L  G :   F  Q  E  I  V  P  L  N  A  G  S  V  I  V  P  E  N  T  T  I  C  M  Q  W  N  S  L  I  S  T  A  L  N  K  L  D  V  N  N  I  T  L  Q  E  A  E  E  E  E  S  V  K  V  Y  P  L  K  K  G  S  S  L  K  F  N  V  E  N  S  T  Q  F  E  C  I  I  S  K  Q  M  V  G  I  F  I  T  V  W  A  R  S  P  L  L  P  Y  I  S  H  T  S  V  S  C  V  G  C  G  I  F  G  Y  L  G </second_frame>
            <third_frame>   L  T  T  S  N  H  M  Y  S  A  Y  M  M  M  *  I  L  V  F  F  S  L  L  F  C  P  Q  F  K  A  M  *  L  T  *  P  Q  T  P  L  C  R  A  D  W  M  M  R  I  C  *  L  I  L  T  Q  H  Q  H  P  *  L  R  Y  K  I  L   : R  Y  L  L  V  H  G  M  L  E  A  L  H  H  Q  T  T  *  T  W  R  N  C  L  I  L  E  T  T  W  L  I  F  M  F  S   : G  F  K  K  L  Y  R  *  M  L  E  V  L  *  C  Q  R  I  Q  L  Y  A  C  N  G  I  L  L  L  A  Q  L  L  T  S  *  M  S  T  T  *  P  F  R  R  Q  R  K  K  K  V  *  K  F  T  H  *  R  K  G  V  P  *  S  S  M  *  K  T  Q  H  N  L  N  A  *  L  A  S  K  W  W  E  Y  L  L  Q  Y  G  H  G  L  H  S  F  P  I  S  V  I  Q  V  S  P  V  *  A  V  V  F  L  A  T  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27179" stop="27255"/>
                    <exon start="27391" stop="27498"/>
                    <exon start="28079" stop="28421"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLDDENMLADSDSTSAPLAEIQNFTLFVSSWNVGGIAPPNDLNMEELLDTRNNLADIYVLGFQEIVPLNAGSVIVPENTTICMQWNSLISTALNKLDVNNITLQEAEEEESVKVYPLKKGSSLKFNVENSTQFECIISKQMVGIFITVWARSPLLPYISHTSVSCVGCGIFGYLG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="29922" PGL_stop="31136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29922" e_stop="30336"/>
            <exon e_start="31113" e_stop="31136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.141" e_score="0.990"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="29922" e_stop="30336" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.141">
            <gDNA_intron_boundary i_start="30337" i_stop="31112" i_length="776"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="31113" e_stop="31136" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29922" stop="30336"/>
              <exon start="31113" stop="31136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTACAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACA : AACACTTAAAAAATAAAGCGAAAA</gDNA_template>
            <first_frame> S  L  V  E  Q  F  L  P  F  V  K  Q  F  *  T  S  S  N  G  N  S  D  C  S  I  T  T  Y  P  V  Q  F  Y  K  W  G  L  E  R  V  E  R  V  Q  T  L  P  L  P  *  K  I  E  R  L  F  L  I  D  P  W  L  K  K  K  H  I  K  A  V  R  E  *  *  L  L  C  M  V  N  T  L  E  H  Q  K  Y  S  N  K  T  T  S  *  Q  N  A  V  Y  W  I  K  E  Q  *  K  K  E  I  K  S  L  E  F  G  S  E  M  M  R  K  T  C  I  L  T  K  V  S  C  Y  R  F  L  F  C  R  Y   : K  H  L  K  N  K  A  K  </first_frame>
            <second_frame>  A  L  L  N  S  F  Y  H  S  *  S  S  S  K  L  L  V  M  A  I  V  I  V  Q  *  Q  H  T  Q  C  N  S  T  S  G  V  W  R  G  *  S  V  Y  K  P  Y  P  Y  L  R  R  *  R  D  C  F  S  *  T  L  G  S  R  R  S  I  S  K  Q  F  G  N  S  D  Y  C  V  W  *  I  H  *  N  I  R  N  I  Q  T  K  P  P  A  S  R  T  Q  F  T  G  *  R  N  S  E  K  K  K  L  R  A  *  N  L  G  P  K  *  *  G  K  L  V  Y  L  L  K  F  R  V  I  G  F  S  F  V  A  T  :  N  T  *  K  I  K  R  K </second_frame>
            <third_frame>   P  C  *  T  V  F  T  I  R  E  A  V  L  N  F  *  *  W  Q  *  *  L  F  N  N  N  I  P  S  A  I  L  Q  V  G  S  G  E  G  R  A  C  T  N  L  T  P  T  L  E  D  R  E  I  V  S  H  R  P  L  A  Q  E  E  A  Y  Q  S  S  S  G  I  V  I  I  V  Y  G  K  Y  T  R  T  S  E  I  F  K  Q  N  H  Q  L  A  E  R  S  L  L  D  K  G  T  V  K  K  R  N  *  E  P  R  I  W  V  R  N  D  E  E  N  L  Y  T  Y  *  S  F  V  L  *  V  S  L  L  S  L  Q :   T  L  K  K  *  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29987" stop="30250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNNNIPSAILQVGSGEGRACTNLTPTLEDREIVSHRPLAQEEAYQSSSGIVIIVYGKYTRTSEIFKQNHQLAERSLLDKGTVKKRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30080" e_stop="30339"/>
            <exon e_start="30407" e_stop="30425"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.969"/>
          <exon-only e_score="0.789"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="30080" e_stop="30339" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="30340" i_stop="30406" i_length="67"/>
          </intron>
          <exon e_serial="2" e_score="0.789">
            <gDNA_exon_boundary e_start="30407" e_stop="30425" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30080" stop="30339"/>
              <exon start="30407" stop="30425"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224329" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACAGTA : AAGAAAAAAAAAGAGAGAA</gDNA_template>
            <first_frame> E  I  V  S  H  R  P  L  A  Q  E  E  A  Y  Q  S  S  S  G  I  V  I  I  V  Y  G  K  Y  T  R  T  S  E  I  F  K  Q  N  H  Q  L  A  E  R  S  L  L  D  K  G  T  V  K  K  R  N  *  E  P  R  I  W  V  R  N  D  E  E  N  L  Y  T  Y  *  S  F  V  L  *  V  S  L  L  S  L  Q  * :   R  K  K  K  R  E </first_frame>
            <second_frame>  R  L  F  L  I  D  P  W  L  K  K  K  H  I  K  A  V  R  E  *  *  L  L  C  M  V  N  T  L  E  H  Q  K  Y  S  N  K  T  T  S  *  Q  N  A  V  Y  W  I  K  E  Q  *  K  K  E  I  K  S  L  E  F  G  S  E  M  M  R  K  T  C  I  L  T  K  V  S  C  Y  R  F  L  F  C  R  Y  S   : K  E  K  K  R  E   </second_frame>
            <third_frame>   D  C  F  S  *  T  L  G  S  R  R  S  I  S  K  Q  F  G  N  S  D  Y  C  V  W  *  I  H  *  N  I  R  N  I  Q  T  K  P  P  A  S  R  T  Q  F  T  G  *  R  N  S  E  K  K  K  L  R  A  *  N  L  G  P  K  *  *  G  K  L  V  Y  L  L  K  F  R  V  I  G  F  S  F  V  A  T  V  :  K  K  K  K  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="30534" PGL_stop="30070"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30534" e_stop="30070"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="30534" e_stop="30070" e_length="465"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30534" stop="30070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430360" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATGTATTTTGAATGTAACCTTATATTCCCTTTCTGGATCAATATGGAAATTCATGTTTCCTAAAAGGTTATTCAACAAATTATGCTTGCCTCACCTTCCCACAACCCTTCTCTCTTTTTTTTTCTTCTTATTTGCAAATAAATAAAAAGGTTGGAATGAATCAGCCAGTAATTCATCATCCCCTTGCTGCCCTTACTGTAGCGACAAAAGAGAAACCTATAACACGAAACTTTAGTAAGTATACAAGTTTTCCTCATCATTTCGGACCCAAATTCTAGGCTCTTAATTTCTTTTTTTCACTGTTCCTTTATCCAGTAAACTGCGTTCTGCTAGCTGGTGGTTTTGTTTGAATATTTCTGATGTTCTAGTGTATTTACCATACACAATAATCACTATTCCCGAACTGCTTTGATATGCTTCTTCTTGAGCCAAGGGTCTATGAGAAACAATCTCTCTATCTTCT</gDNA_template>
            <first_frame> A  C  I  L  N  V  T  L  Y  S  L  S  G  S  I  W  K  F  M  F  P  K  R  L  F  N  K  L  C  L  P  H  L  P  T  T  L  L  S  F  F  F  F  L  F  A  N  K  *  K  G  W  N  E  S  A  S  N  S  S  S  P  C  C  P  Y  C  S  D  K  R  E  T  Y  N  T  K  L  *  *  V  Y  K  F  S  S  S  F  R  T  Q  I  L  G  S  *  F  L  F  F  T  V  P  L  S  S  K  L  R  S  A  S  W  W  F  C  L  N  I  S  D  V  L  V  Y  L  P  Y  T  I  I  T  I  P  E  L  L  *  Y  A  S  S  *  A  K  G  L  *  E  T  I  S  L  S  S </first_frame>
            <second_frame>  H  V  F  *  M  *  P  Y  I  P  F  L  D  Q  Y  G  N  S  C  F  L  K  G  Y  S  T  N  Y  A  C  L  T  F  P  Q  P  F  S  L  F  F  S  S  Y  L  Q  I  N  K  K  V  G  M  N  Q  P  V  I  H  H  P  L  A  A  L  T  V  A  T  K  E  K  P  I  T  R  N  F  S  K  Y  T  S  F  P  H  H  F  G  P  K  F  *  A  L  N  F  F  F  S  L  F  L  Y  P  V  N  C  V  L  L  A  G  G  F  V  *  I  F  L  M  F  *  C  I  Y  H  T  Q  *  S  L  F  P  N  C  F  D  M  L  L  L  E  P  R  V  Y  E  K  Q  S  L  Y  L   </second_frame>
            <third_frame>   M  Y  F  E  C  N  L  I  F  P  F  W  I  N  M  E  I  H  V  S  *  K  V  I  Q  Q  I  M  L  A  S  P  S  H  N  P  S  L  F  F  F  L  L  I  C  K  *  I  K  R  L  E  *  I  S  Q  *  F  I  I  P  L  L  P  L  L  *  R  Q  K  R  N  L  *  H  E  T  L  V  S  I  Q  V  F  L  I  I  S  D  P  N  S  R  L  L  I  S  F  F  H  C  S  F  I  Q  *  T  A  F  C  *  L  V  V  L  F  E  Y  F  *  C  S  S  V  F  T  I  H  N  N  H  Y  S  R  T  A  L  I  C  F  F  L  S  Q  G  S  M  R  N  N  L  S  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30515" stop="30255"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYIPFLDQYGNSCFLKGYSTNYACLTFPQPFSLFFSSYLQINKKVGMNQPVIHHPLAALTVATKEKPITRNFSKYTSFPHHFGPKF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36473" PGL_stop="46962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36473" e_stop="36582"/>
            <exon e_start="36672" e_stop="36723"/>
            <exon e_start="38256" e_stop="38329"/>
            <exon e_start="38440" e_stop="38503"/>
            <exon e_start="39260" e_stop="39372"/>
            <exon e_start="39470" e_stop="39517"/>
            <exon e_start="39769" e_stop="39840"/>
            <exon e_start="39984" e_stop="40073"/>
            <exon e_start="41120" e_stop="41293"/>
            <exon e_start="41646" e_stop="41729"/>
            <exon e_start="42520" e_stop="42575"/>
            <exon e_start="42914" e_stop="43044"/>
            <exon e_start="43113" e_stop="43205"/>
            <exon e_start="43498" e_stop="43562"/>
            <exon e_start="43794" e_stop="43937"/>
            <exon e_start="44022" e_stop="44065"/>
            <exon e_start="44923" e_stop="45006"/>
            <exon e_start="45107" e_stop="45180"/>
            <exon e_start="45270" e_stop="45382"/>
            <exon e_start="45472" e_stop="45567"/>
            <exon e_start="46526" e_stop="46962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.210" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36473" e_stop="36582" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36672" e_stop="36723" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38256" e_stop="38329" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38440" e_stop="38503" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39260" e_stop="39372" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39470" e_stop="39517" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39769" e_stop="39840" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39984" e_stop="40073" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41120" e_stop="41293" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.210" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41646" e_stop="41729" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.922" acc_prob="0.709">
            <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42520" e_stop="42575" e_length="56"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42914" e_stop="43044" e_length="131"/>
          </exon>
          <intron i_serial="12" don_prob="0.818" acc_prob="0.694">
            <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="43113" e_stop="43205" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="43498" e_stop="43562" e_length="65"/>
          </exon>
          <intron i_serial="14" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="43794" e_stop="43937" e_length="144"/>
          </exon>
          <intron i_serial="15" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="44022" e_stop="44065" e_length="44"/>
          </exon>
          <intron i_serial="16" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="44923" e_stop="45006" e_length="84"/>
          </exon>
          <intron i_serial="17" don_prob="0.925" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
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          </exon>
          <intron i_serial="18" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
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          </exon>
          <intron i_serial="19" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="45472" e_stop="45567" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.940" acc_prob="0.785">
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          </intron>
          <exon e_serial="21" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46962" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745008" strand="+"/>
          </PGS_line>
          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E447522" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="38256" stop="38329"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745780" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="39984" stop="40073"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202842" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281372" strand="-"/>
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          <PGS_line>
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              <exon start="41120" stop="41293"/>
              <exon start="41646" stop="41722"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="41120" stop="41215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314348" strand="+"/>
          </PGS_line>
          <PGS_line>
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              <exon start="39984" stop="40035"/>
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            <referenceDNA id="SGN-E314387" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E417546" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E314130" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E326925" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E328534" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E317027" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E366492" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39482" stop="39517"/>
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            <referenceDNA id="SGN-E466766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39771" stop="39840"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E323558" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E457597" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E429611" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E305048" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E203243" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E542306" strand="+"/>
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          <PGS_line>
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              <exon start="45270" stop="45359"/>
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            <referenceDNA id="SGN-E304607" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E733077" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44978" stop="45006"/>
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              <exon start="46526" stop="46690"/>
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            <referenceDNA id="SGN-E429612" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44999" stop="45006"/>
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            <referenceDNA id="SGN-E281582" strand="-"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45310" stop="45382"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552280" strand="+"/>
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          <PGS_line>
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              <exon start="45310" stop="45382"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45377" stop="45382"/>
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              <exon start="46526" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412028" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45475" stop="45567"/>
              <exon start="46526" stop="46704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46560" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46560" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46561" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG : CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG : ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG : GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG : GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG : GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG : AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG : ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG : GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA : CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG : GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG : ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG : GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG : GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG : ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT : ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA : CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT : ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT : GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG : AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG : GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</gDNA_template>
            <first_frame> P  L  *  I  F  F  F  P  F  S  L  F  L  C  L  F  R  L  R  T  K  H  S  T  I  E  V  Y  S  P  H  T  Y  K  A  L  S :   T  I  I  R  W  I  F  R  A  K  N  S  S  T  T  P  M  :  M  L  *  Q  S  S  L  R  D  L  L  R  I  I  Q  G  C  S  I  W  M  V  S  Q  R :   L  R  S  S  C  V  L  M  F  L  V  Q  N  M  T  K  L  P  S  Y  Q  :  V  V  E  V  A  M  S  L  L  M  L  D  L  L  E  K  G  C  *  L  Q  L  S  V  G  T  F  L  P  L  Q  M  L  I  Q  F  L  R :   A  Y  E  L  S  Q  V  P  W  G  A  F  L  L  S  R :   T  I  L  V  I  D  *  I  L  V  W  L  L  N  K  Q  N  L  K  V  I  K  S  R :   W  *  S  S  V  M  T  V  L  Y  H  L  Q  E  A  L  L  A  E  E  G  W  Q  G  R  F  L  F  T  R :   L  P  E  L  Q  Q  L  V  V  F  P  L  L  T  L  Q  L  K  P  N  V  H  Q  K  W  L  G  Q  W  A  L  R  Y  L  F  A  R  C  Q  D  R  *  L  Q  T  V  *  A  Q  G  R  W  S  L  V  L  E  Y :   M  G  N  Q  E  L  L  *  L  T  F  N  Q  *  M  W  W  F  L  M  F  *  R  R  F  C  H  R :   R  P  T  T  F  Q  S  R  V  G  V  E  S  C  S  *  L  M   : D  *  E  Q  H  H  *  W  N  *  *  L  *  L  A  R  L  S  Q  N  C  S  L  N  M  V  *  L  L  I  E  S  I  Q  G  H  L  *  R  H  L  I  W  Q  :  A  F  Q  F  R  *  *  R  L  I  K  Q  F  *  I  V  *  M  L  Q  L  K  L  Q  I  G  L  L  V  L  K  :  A  T  G  L  L  Q  R  F  L  F  H  F  R  H  H  I  L  S  R  L  K  R :   H  *  V  G  L  K  N  *  A  L  R  V  I  S  L  R  Q  L  L  K  Q  Q  L  L  K  L  *  I  S  G  I  I  *  M  S  G  T  I  K  L  V  M  A  I  V  V  Q  L :   C  S  E  V  L  W  L  Y  L  K  T  *  R  S   : T  I  R  *  M  T  L  Q  K  Q  S  M  K  L  E  P  P  L  E  E  *  W  G  E  L  A  V  S   : Y  T  V  Y  S  V  R  Q  H  M  R  S  *  K  K  M  L  S  R  L  S  Q  L  F  T  :  G  L  M  H  L  K  L  L  S  L  L  L  V  N  M  E  E  L  V  L  V  I  V  P  F  *  M  L  L  Y  Q  H  C  Q  L  L  K  R :   G  *  M  L  G  T  T  L  R  M  L  S  L  F  L  L  R  Q  H  L  L  E  P  S  Q  P  S  T  C  R  R  R :   L  A  V  Q  P  M  Y  P  E  I  F  L  H  Q  F  L  T  Q  V  P  W  L  Q  L  R  G  T  E  Q  L  R  *  L  *  R  R  S  I  I  Q  H  K  H  I  *  S  A  I  P  I  T  S  C  R  N  V  F  S  F  S  R  K  K  L  T  Q  Q  F  F  A  R  K  P  Y  E  E  L  A  F  R  L  C  S  P  A  *  S  R  E  S  V  E  N  V  C  Y  S  P  F  I  Q  C  S  K  *  G  K  K  Q  T  L  P  C  R  M  V  I  C  E  G  G  C  K  L  Y  C  N  N  G  F  S  Y  S  A  T  F  S  I  S  S  R  T  F  T  T  </first_frame>
            <second_frame>  L  Y  K  S  F  F  S  P  S  L  S  F  C  V  C  S  D  F  G  Q  S  I  Q  Q  L  K  S  T  L  P  T  P  T  K  P  S   : A  Q  L  S  D  G  F  S  E  Q  K  T  H  Q  R  P  Q  * :   C  C  D  R  V  H  *  G  T  Y  *  E  L  S  R  V  A  V  S  G  W  F  P  R   : G  *  G  R  L  A  C  *  C  F  W  C  K  I  *  Q  S  C  H  H  I  R :   W  W  K  W  P  *  A  C  S  C  W  I  C  W  R  R  D  A  D  C  S  Y  L  W  G  R  F  C  L  S  K  C  *  F  N  S  C   : G  H  T  S  C  H  R  S  H  G  V  P  S  Y  C  Q   : E  L  Y  W  *  S  T  E  F  W  F  G  C  *  T  S  K  I  *  R  L  *  S  R   : D  G  N  R  R  *  *  L  C  F  T  T  S  K  R  H  C  W  P  K  R  V  G  R  D  A  S  C  S  Q   : G  C  R  S  C  S  S  L  W  S  S  P  C  *  R  C  S  *  S  Q  T  C  I  R  N  G  W  D  N  G  R  C  V  I  C  L  H  V  A  R  T  G  D  F  R  P  F  R  P  R  E  D  G  A  W  S  W  N   : T  W  G  T  R  S  C  C  S  *  P  S  T  S  R  C  G  G  F  S  C  S  E  G  D  F  V  T   : G  D  Q  L  R  S  N  H  A  W  E  *  S  R  A  P  D  *  W  :  I  R  S  N  T  I  D  G  I  D  D  Y  S  W  Q  G  C  P  R  I  A  A  *  T  W  S  S  C  *  *  S  L  Y  R  V  I  Y  D  V  T  *  Y  G  R :   L  F  N  F  G  N  E  G  *  S  S  N  F  R  S  F  R  C  S  N  *  S  S  K  L  A  C  W  C  *  R :   Q  P  A  S  C  K  D  S  C  S  T  S  A  I  T  F  Y  Q  D  *  K   : D  I  E  S  A  *  K  T  E  P  S  G  S  Y  P  *  D  S  Y  *  S  S  S  Y  *  S  C  K  S  Q  G  *  F  E  *  V  G  Q  *  S  W  *  W  R  L  W  F  N   : Y  V  Q  R  C  C  G  Y  T  *  R  H  E  E  V  :  L  S  V  E  *  P  C  R  N  S  Q  *  N  W  S  L  H  W  K  S  N  G  G  N  *  R  Y  L  :  I  Q  Y  I  L  *  G  S  I  C  E  V  E  R  K  C  *  V  G  C  H  S  Y  S  L :   G  *  C  T  *  S  C  Y  R  C  C  *  *  I  W  R  S  *  C  W  L  S  Y  P  F  R  C  S  Y  T  S  I  V  S  S  *  R   : E  V  E  C  W  G  R  P  C  G  C  F  H  Y  F  C  *  G  S  I  C  W  S  R  V  N  Q  A  H  A  G  A   : G  W  P  F  N  L  C  T  R  R  Y  S  C  I  S  S  *  P  R  C  H  G  C  S  C  V  V  Q  S  S  C  V  S  C  E  G  E  V  *  Y  S  I  S  I  F  N  R  P  F  L  L  L  P  A  G  M  F  S  L  S  R  G  R  N  *  P  N  N  F  L  L  V  N  L  M  R  S  *  L  S  A  Y  A  V  L  H  K  A  E  R  V  *  K  M  Y  V  T  V  L  L  Y  S  V  L  S  E  G  K  N  K  H  C  H  V  E  W  *  S  V  K  V  V  V  N  F  I  V  T  M  D  F  L  I  L  L  L  L  A  S  L  R  A  P  L  Q  R </second_frame>
            <third_frame>   S  I  N  L  F  F  P  L  L  S  L  F  V  F  V  Q  T  S  D  K  A  F  N  N  *  S  L  L  S  P  H  L  Q  S  P  Q  :  H  N  Y  P  M  D  F  Q  S  K  K  L  I  N  D  P  N   : D  V  V  T  E  F  I  E  G  L  I  E  N  Y  P  G  L  Q  Y  L  D  G  F  P  E  :  V  K  V  V  L  R  A  D  V  S  G  A  K  Y  D  K  V  A  I  I  S   : G  G  G  S  G  H  E  P  A  H  A  G  F  V  G  E  G  M  L  T  A  A  I  C  G  D  V  F  A  S  P  N  V  D  S  I  L  A  :  G  I  R  A  V  T  G  P  M  G  C  L  L  I  V  K  :  N  Y  T  G  D  R  L  N  F  G  L  A  A  E  Q  A  K  S  E  G  Y  K  V  E  :  M  V  I  V  G  D  D  C  A  L  P  P  P  R  G  I  A  G  R  R  G  L  A  G  T  L  L  V  H  K  :  V  A  G  A  A  A  A  C  G  L  P  L  A  D  V  A  A  E  A  K  R  A  S  E  M  V  G  T  M  G  V  A  L  S  V  C  T  L  P  G  Q  V  T  S  D  R  L  G  P  G  K  M  E  L  G  L  G  I  :  H  G  E  P  G  A  A  V  A  D  L  Q  P  V  D  V  V  V  S  H  V  L  K  E  I  L  S  P  :  E  T  N  Y  V  P  I  T  R  G  S  R  V  V  L  L  I  N  G :   L  G  A  T  P  L  M  E  L  M  I  I  A  G  K  A  V  P  E  L  Q  L  E  H  G  L  A  V  D  R  V  Y  T  G  S  F  M  T  S  L  D  M  A   : G  F  S  I  S  V  M  K  A  D  Q  A  I  L  D  R  L  D  A  P  T  K  A  P  N  W  P  V  G  A  E   : G  N  R  P  P  A  K  I  P  V  P  L  P  P  S  H  S  I  K  I  E  K  :  T  L  S  R  P  E  K  L  S  P  Q  G  H  I  L  E  T  A  I  E  A  A  A  T  E  V  V  N  L  R  D  N  L  N  E  W  D  N  K  V  G  D  G  D  C  G  S  T  :  M  F  R  G  A  V  A  I  L  E  D  M  K  K  Y :   Y  P  L  N  D  P  A  E  T  V  N  E  I  G  A  S  I  G  R  V  M  G  G  T  S  G  I  L :   Y  S  I  F  C  K  A  A  Y  A  K  L  K  E  N  A  E  S  V  V  T  A  I  H   : W  A  D  A  L  E  A  A  I  A  A  V  S  K  Y  G  G  A  S  A  G  Y  R  T  L  L  D  A  L  I  P  A  L  S  A  L  K  E  :  R  L  N  A  G  D  D  P  A  D  A  F  I  I  S  A  E  A  A  S  A  G  A  E  S  T  K  H  M  Q  A  Q  :  A  G  R  S  T  Y  V  P  G  D  I  L  A  S  V  P  D  P  G  A  M  A  A  A  A  W  Y  R  A  A  A  L  A  V  K  E  K  Y  N  T  A  *  A  Y  L  I  G  H  S  Y  Y  F  L  Q  E  C  F  L  F  L  E  E  E  I  N  P  T  I  F  C  S  *  T  L  *  G  V  S  F  P  L  M  Q  S  C  I  K  P  R  E  C  R  K  C  M  L  Q  S  F  Y  T  V  F  *  V  R  E  K  T  N  T  A  M  *  N  G  N  L  *  R  W  L  *  T  L  L  *  Q  W  I  F  L  F  C  Y  F  *  H  L  F  A  H  L  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36550" stop="36582"/>
                    <exon start="36672" stop="36723"/>
                    <exon start="38256" stop="38329"/>
                    <exon start="38440" stop="38503"/>
                    <exon start="39260" stop="39372"/>
                    <exon start="39470" stop="39517"/>
                    <exon start="39769" stop="39840"/>
                    <exon start="39984" stop="40073"/>
                    <exon start="41120" stop="41293"/>
                    <exon start="41646" stop="41729"/>
                    <exon start="42520" stop="42575"/>
                    <exon start="42914" stop="43044"/>
                    <exon start="43113" stop="43205"/>
                    <exon start="43498" stop="43562"/>
                    <exon start="43794" stop="43937"/>
                    <exon start="44022" stop="44065"/>
                    <exon start="44923" stop="45006"/>
                    <exon start="45107" stop="45180"/>
                    <exon start="45270" stop="45382"/>
                    <exon start="45472" stop="45567"/>
                    <exon start="46526" stop="46651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1827</number_coding_nucleotides>
                  <number_encoded_amino_acids>609</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPHLQSPQHNYPMDFQSKKLINDPNDVVTEFIEGLIENYPGLQYLDGFPEVKVVLRADVSGAKYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPNVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGIAGRRGLAGTLLVHKVAGAAAACGLPLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKEILSPETNYVPITRGSRVVLLINGLGATPLMELMIIAGKAVPELQLEHGLAVDRVYTGSFMTSLDMAGFSISVMKADQAILDRLDAPTKAPNWPVGAEGNRPPAKIPVPLPPSHSIKIEKTLSRPEKLSPQGHILETAIEAAATEVVNLRDNLNEWDNKVGDGDCGSTMFRGAVAILEDMKKYYPLNDPAETVNEIGASIGRVMGGTSGILYSIFCKAAYAKLKENAESVVTAIHWADALEAAIAAVSKYGGASAGYRTLLDALIPALSALKERLNAGDDPADAFIISAEAASAGAESTKHMQAQAGRSTYVPGDILASVPDPGAMAAAAWYRAAALAVKEKYNTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39355" e_stop="39372"/>
            <exon e_start="39489" e_stop="39517"/>
            <exon e_start="39769" e_stop="39840"/>
            <exon e_start="39984" e_stop="40073"/>
            <exon e_start="41120" e_stop="41293"/>
            <exon e_start="41646" e_stop="41729"/>
            <exon e_start="42520" e_stop="42575"/>
            <exon e_start="42914" e_stop="43044"/>
            <exon e_start="43113" e_stop="43205"/>
            <exon e_start="43498" e_stop="43562"/>
            <exon e_start="43794" e_stop="43937"/>
            <exon e_start="44022" e_stop="44065"/>
            <exon e_start="44923" e_stop="45006"/>
            <exon e_start="45107" e_stop="45180"/>
            <exon e_start="45270" e_stop="45382"/>
            <exon e_start="45472" e_stop="45567"/>
            <exon e_start="46526" e_stop="46962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.000" e_score="0.889"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.966"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.986"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="0.989"/>
          <exon-intron don_prob="0.210" acc_prob="1.000" e_score="0.971"/>
          <exon-intron don_prob="0.922" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.889">
            <gDNA_exon_boundary e_start="39355" e_stop="39372" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.000">
            <gDNA_intron_boundary i_start="39373" i_stop="39488" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="0.966">
            <gDNA_exon_boundary e_start="39489" e_stop="39517" e_length="29"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="39769" e_stop="39840" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="39984" e_stop="40073" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046"/>
          </intron>
          <exon e_serial="5" e_score="0.971">
            <gDNA_exon_boundary e_start="41120" e_stop="41293" e_length="174"/>
          </exon>
          <intron i_serial="5" don_prob="0.210" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41646" e_stop="41729" e_length="84"/>
          </exon>
          <intron i_serial="6" don_prob="0.922" acc_prob="0.709">
            <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="42520" e_stop="42575" e_length="56"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="42914" e_stop="43044" e_length="131"/>
          </exon>
          <intron i_serial="8" don_prob="0.818" acc_prob="0.694">
            <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43113" e_stop="43205" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="43498" e_stop="43562" e_length="65"/>
          </exon>
          <intron i_serial="10" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="43794" e_stop="43937" e_length="144"/>
          </exon>
          <intron i_serial="11" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="44022" e_stop="44065" e_length="44"/>
          </exon>
          <intron i_serial="12" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="44923" e_stop="45006" e_length="84"/>
          </exon>
          <intron i_serial="13" don_prob="0.925" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="45107" e_stop="45180" e_length="74"/>
          </exon>
          <intron i_serial="14" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="45270" e_stop="45382" e_length="113"/>
          </exon>
          <intron i_serial="15" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="45472" e_stop="45567" e_length="96"/>
          </exon>
          <intron i_serial="16" don_prob="0.940" acc_prob="0.785">
            <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="46526" e_stop="46962" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39355" stop="39372"/>
              <exon start="39489" stop="39517"/>
              <exon start="39769" stop="39840"/>
              <exon start="39984" stop="40073"/>
              <exon start="41120" stop="41293"/>
              <exon start="41646" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466986" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39771" stop="39840"/>
              <exon start="39984" stop="40073"/>
              <exon start="41120" stop="41293"/>
              <exon start="41646" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="42933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39784" stop="39840"/>
              <exon start="39984" stop="40073"/>
              <exon start="41120" stop="41161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268155" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41272" stop="41293"/>
              <exon start="41646" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43201"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41656" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41656" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="44942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41656" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305048" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="44994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43145" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E542306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44923" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44978" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429612" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44999" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281582" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45310" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45310" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46929"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45377" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412028" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45475" stop="45567"/>
              <exon start="46526" stop="46704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614377" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46560" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540856" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46560" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46561" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289940" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGATTCAATTCTTGCG : GTCCCATGGGGTGCCTTCTTATTGTCAAG : AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG : ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG : GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA : CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG : GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG : ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG : GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG : GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG : ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT : ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA : CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT : ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT : GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG : AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG : GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</gDNA_template>
            <first_frame> V  D  S  I  L  A  :  V  P  W  G  A  F  L  L  S  R :   T  I  L  V  I  D  *  I  L  V  W  L  L  N  K  Q  N  L  K  V  I  K  S  R :   W  *  S  S  V  M  T  V  L  Y  H  L  Q  E  A  L  L  A  E  E  G  W  Q  G  R  F  L  F  T  R :   L  P  E  L  Q  Q  L  V  V  F  P  L  L  T  L  Q  L  K  P  N  V  H  Q  K  W  L  G  Q  W  A  L  R  Y  L  F  A  R  C  Q  D  R  *  L  Q  T  V  *  A  Q  G  R  W  S  L  V  L  E  Y :   M  G  N  Q  E  L  L  *  L  T  F  N  Q  *  M  W  W  F  L  M  F  *  R  R  F  C  H  R :   R  P  T  T  F  Q  S  R  V  G  V  E  S  C  S  *  L  M   : D  *  E  Q  H  H  *  W  N  *  *  L  *  L  A  R  L  S  Q  N  C  S  L  N  M  V  *  L  L  I  E  S  I  Q  G  H  L  *  R  H  L  I  W  Q  :  A  F  Q  F  R  *  *  R  L  I  K  Q  F  *  I  V  *  M  L  Q  L  K  L  Q  I  G  L  L  V  L  K  :  A  T  G  L  L  Q  R  F  L  F  H  F  R  H  H  I  L  S  R  L  K  R :   H  *  V  G  L  K  N  *  A  L  R  V  I  S  L  R  Q  L  L  K  Q  Q  L  L  K  L  *  I  S  G  I  I  *  M  S  G  T  I  K  L  V  M  A  I  V  V  Q  L :   C  S  E  V  L  W  L  Y  L  K  T  *  R  S   : T  I  R  *  M  T  L  Q  K  Q  S  M  K  L  E  P  P  L  E  E  *  W  G  E  L  A  V  S   : Y  T  V  Y  S  V  R  Q  H  M  R  S  *  K  K  M  L  S  R  L  S  Q  L  F  T  :  G  L  M  H  L  K  L  L  S  L  L  L  V  N  M  E  E  L  V  L  V  I  V  P  F  *  M  L  L  Y  Q  H  C  Q  L  L  K  R :   G  *  M  L  G  T  T  L  R  M  L  S  L  F  L  L  R  Q  H  L  L  E  P  S  Q  P  S  T  C  R  R  R :   L  A  V  Q  P  M  Y  P  E  I  F  L  H  Q  F  L  T  Q  V  P  W  L  Q  L  R  G  T  E  Q  L  R  *  L  *  R  R  S  I  I  Q  H  K  H  I  *  S  A  I  P  I  T  S  C  R  N  V  F  S  F  S  R  K  K  L  T  Q  Q  F  F  A  R  K  P  Y  E  E  L  A  F  R  L  C  S  P  A  *  S  R  E  S  V  E  N  V  C  Y  S  P  F  I  Q  C  S  K  *  G  K  K  Q  T  L  P  C  R  M  V  I  C  E  G  G  C  K  L  Y  C  N  N  G  F  S  Y  S  A  T  F  S  I  S  S  R  T  F  T  T  </first_frame>
            <second_frame>  L  I  Q  F  L  R :   S  H  G  V  P  S  Y  C  Q   : E  L  Y  W  *  S  T  E  F  W  F  G  C  *  T  S  K  I  *  R  L  *  S  R   : D  G  N  R  R  *  *  L  C  F  T  T  S  K  R  H  C  W  P  K  R  V  G  R  D  A  S  C  S  Q   : G  C  R  S  C  S  S  L  W  S  S  P  C  *  R  C  S  *  S  Q  T  C  I  R  N  G  W  D  N  G  R  C  V  I  C  L  H  V  A  R  T  G  D  F  R  P  F  R  P  R  E  D  G  A  W  S  W  N   : T  W  G  T  R  S  C  C  S  *  P  S  T  S  R  C  G  G  F  S  C  S  E  G  D  F  V  T   : G  D  Q  L  R  S  N  H  A  W  E  *  S  R  A  P  D  *  W  :  I  R  S  N  T  I  D  G  I  D  D  Y  S  W  Q  G  C  P  R  I  A  A  *  T  W  S  S  C  *  *  S  L  Y  R  V  I  Y  D  V  T  *  Y  G  R :   L  F  N  F  G  N  E  G  *  S  S  N  F  R  S  F  R  C  S  N  *  S  S  K  L  A  C  W  C  *  R :   Q  P  A  S  C  K  D  S  C  S  T  S  A  I  T  F  Y  Q  D  *  K   : D  I  E  S  A  *  K  T  E  P  S  G  S  Y  P  *  D  S  Y  *  S  S  S  Y  *  S  C  K  S  Q  G  *  F  E  *  V  G  Q  *  S  W  *  W  R  L  W  F  N   : Y  V  Q  R  C  C  G  Y  T  *  R  H  E  E  V  :  L  S  V  E  *  P  C  R  N  S  Q  *  N  W  S  L  H  W  K  S  N  G  G  N  *  R  Y  L  :  I  Q  Y  I  L  *  G  S  I  C  E  V  E  R  K  C  *  V  G  C  H  S  Y  S  L :   G  *  C  T  *  S  C  Y  R  C  C  *  *  I  W  R  S  *  C  W  L  S  Y  P  F  R  C  S  Y  T  S  I  V  S  S  *  R   : E  V  E  C  W  G  R  P  C  G  C  F  H  Y  F  C  *  G  S  I  C  W  S  R  V  N  Q  A  H  A  G  A   : G  W  P  F  N  L  C  T  R  R  Y  S  C  I  S  S  *  P  R  C  H  G  C  S  C  V  V  Q  S  S  C  V  S  C  E  G  E  V  *  Y  S  I  S  I  F  N  R  P  F  L  L  L  P  A  G  M  F  S  L  S  R  G  R  N  *  P  N  N  F  L  L  V  N  L  M  R  S  *  L  S  A  Y  A  V  L  H  K  A  E  R  V  *  K  M  Y  V  T  V  L  L  Y  S  V  L  S  E  G  K  N  K  H  C  H  V  E  W  *  S  V  K  V  V  V  N  F  I  V  T  M  D  F  L  I  L  L  L  L  A  S  L  R  A  P  L  Q  R </second_frame>
            <third_frame>   *  F  N  S  C   : G  P  M  G  C  L  L  I  V  K  :  N  Y  T  G  D  R  L  N  F  G  L  A  A  E  Q  A  K  S  E  G  Y  K  V  E  :  M  V  I  V  G  D  D  C  A  L  P  P  P  R  G  I  A  G  R  R  G  L  A  G  T  L  L  V  H  K  :  V  A  G  A  A  A  A  C  G  L  P  L  A  D  V  A  A  E  A  K  R  A  S  E  M  V  G  T  M  G  V  A  L  S  V  C  T  L  P  G  Q  V  T  S  D  R  L  G  P  G  K  M  E  L  G  L  G  I  :  H  G  E  P  G  A  A  V  A  D  L  Q  P  V  D  V  V  V  S  H  V  L  K  E  I  L  S  P  :  E  T  N  Y  V  P  I  T  R  G  S  R  V  V  L  L  I  N  G :   L  G  A  T  P  L  M  E  L  M  I  I  A  G  K  A  V  P  E  L  Q  L  E  H  G  L  A  V  D  R  V  Y  T  G  S  F  M  T  S  L  D  M  A   : G  F  S  I  S  V  M  K  A  D  Q  A  I  L  D  R  L  D  A  P  T  K  A  P  N  W  P  V  G  A  E   : G  N  R  P  P  A  K  I  P  V  P  L  P  P  S  H  S  I  K  I  E  K  :  T  L  S  R  P  E  K  L  S  P  Q  G  H  I  L  E  T  A  I  E  A  A  A  T  E  V  V  N  L  R  D  N  L  N  E  W  D  N  K  V  G  D  G  D  C  G  S  T  :  M  F  R  G  A  V  A  I  L  E  D  M  K  K  Y :   Y  P  L  N  D  P  A  E  T  V  N  E  I  G  A  S  I  G  R  V  M  G  G  T  S  G  I  L :   Y  S  I  F  C  K  A  A  Y  A  K  L  K  E  N  A  E  S  V  V  T  A  I  H   : W  A  D  A  L  E  A  A  I  A  A  V  S  K  Y  G  G  A  S  A  G  Y  R  T  L  L  D  A  L  I  P  A  L  S  A  L  K  E  :  R  L  N  A  G  D  D  P  A  D  A  F  I  I  S  A  E  A  A  S  A  G  A  E  S  T  K  H  M  Q  A  Q  :  A  G  R  S  T  Y  V  P  G  D  I  L  A  S  V  P  D  P  G  A  M  A  A  A  A  W  Y  R  A  A  A  L  A  V  K  E  K  Y  N  T  A  *  A  Y  L  I  G  H  S  Y  Y  F  L  Q  E  C  F  L  F  L  E  E  E  I  N  P  T  I  F  C  S  *  T  L  *  G  V  S  F  P  L  M  Q  S  C  I  K  P  R  E  C  R  K  C  M  L  Q  S  F  Y  T  V  F  *  V  R  E  K  T  N  T  A  M  *  N  G  N  L  *  R  W  L  *  T  L  L  *  Q  W  I  F  L  F  C  Y  F  *  H  L  F  A  H  L  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39360" stop="39372"/>
                    <exon start="39489" stop="39517"/>
                    <exon start="39769" stop="39840"/>
                    <exon start="39984" stop="40073"/>
                    <exon start="41120" stop="41293"/>
                    <exon start="41646" stop="41729"/>
                    <exon start="42520" stop="42575"/>
                    <exon start="42914" stop="43044"/>
                    <exon start="43113" stop="43205"/>
                    <exon start="43498" stop="43562"/>
                    <exon start="43794" stop="43937"/>
                    <exon start="44022" stop="44065"/>
                    <exon start="44923" stop="45006"/>
                    <exon start="45107" stop="45180"/>
                    <exon start="45270" stop="45382"/>
                    <exon start="45472" stop="45567"/>
                    <exon start="46526" stop="46651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1485</number_coding_nucleotides>
                  <number_encoded_amino_acids>495</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FNSCGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGIAGRRGLAGTLLVHKVAGAAAACGLPLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKEILSPETNYVPITRGSRVVLLINGLGATPLMELMIIAGKAVPELQLEHGLAVDRVYTGSFMTSLDMAGFSISVMKADQAILDRLDAPTKAPNWPVGAEGNRPPAKIPVPLPPSHSIKIEKTLSRPEKLSPQGHILETAIEAAATEVVNLRDNLNEWDNKVGDGDCGSTMFRGAVAILEDMKKYYPLNDPAETVNEIGASIGRVMGGTSGILYSIFCKAAYAKLKENAESVVTAIHWADALEAAIAAVSKYGGASAGYRTLLDALIPALSALKERLNAGDDPADAFIISAEAASAGAESTKHMQAQAGRSTYVPGDILASVPDPGAMAAAAWYRAAALAVKEKYNTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="44298" e_stop="44693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44298" e_stop="44693" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44298" stop="44693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44300" stop="44693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230255" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</gDNA_template>
            <first_frame> I  I  H  R  V  *  K  A  V  I  G  P  K  S  G  S  Q  T  D  F  S  V  V  K  K  N  N  Y  S  L  T  D  N  M  C  L  C  L  F  S  L  F  P  A  C  T  V  C  G  V  V  I  S  E  C  S  A  C  T  H  L  L  A  A  L  F  A  L  G  K  S  L  *  L  I  V  G  Y  R  *  V  S  F  F  K  Q  G  R  *  K  S  L  H  E  L  K  H  E  V  L  *  K  T  A  *  D  G  R  S  C  V  *  S  P  L  *  S  T  *  *  Y  D  M  K  N  Q  L  L  L  H  V  F </first_frame>
            <second_frame>  L  S  T  E  F  R  R  L  *  L  V  Q  R  A  G  H  R  R  I  S  Q  L  S  K  K  I  I  I  H  *  Q  T  I  C  V  F  V  C  F  P  S  F  L  L  A  P  S  V  V  W  L  F  Q  S  V  L  L  V  H  I  C  L  Q  H  C  L  L  L  G  N  P  C  N  *  L  L  G  I  D  R  F  H  F  L  N  R  G  G  R  S  L  F  M  S  *  N  T  R  F  C  E  R  Q  L  E  T  A  E  V  V  F  N  L  L  C  S  Q  L  N  D  M  I  *  K  I  S  C  Y  C  M  F   </second_frame>
            <third_frame>   Y  P  P  S  L  E  G  C  D  W  S  K  E  R  V  T  D  G  F  L  S  C  Q  K  K  *  L  F  T  N  R  Q  Y  V  S  L  F  V  F  P  L  S  C  L  H  R  L  W  C  G  Y  F  R  V  F  C  L  Y  T  S  A  C  S  I  V  C  S  W  E  I  P  V  I  N  C  W  V  *  I  G  F  I  F  *  T  G  E  V  E  V  S  S  *  V  K  T  R  G  F  V  K  D  S  L  R  R  Q  K  L  C  L  I  S  F  V  V  N  L  M  I  *  Y  E  K  S  A  A  I  A  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44316" stop="44516"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVIGPKSGSQTDFSVVKKNNYSLTDNMCLCLFSLFPACTVCGVVISECSACTHLLAALFALGKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="43307" e_stop="43497"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.911">
            <gDNA_exon_boundary e_start="43307" e_stop="43497" e_length="191"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43307" stop="43497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594120" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAG</gDNA_template>
            <first_frame> K  A  P  P  H  L  Y  F  P  *  *  K  N  *  S  R  K  K  S  S  Y  *  V  I  Q  *  Y  S  L  I  C  G  S  Y  N  *  R  I  I  C  V  I  L  *  Q  L  T  L  Y  *  I  I  D  L  L  C  L  L  E  I  K  N  F   </first_frame>
            <second_frame>  K  L  P  L  I  Y  I  S  L  S  K  R  T  R  A  E  R  K  V  H  I  R  *  F  S  S  I  L  L  S  V  G  H  I  T  S  A  *  S  V  *  F  C  S  N  *  P  C  I  R  *  *  I  Y  F  A  Y  W  K  L  K  I  S  </second_frame>
            <third_frame>   S  S  P  S  F  I  F  P  L  V  K  E  L  E  Q  K  E  K  F  I  L  G  N  S  V  V  F  S  Y  L  W  V  I  *  L  A  H  N  L  C  D  F  V  A  I  N  P  V  L  D  N  R  S  T  L  L  T  G  N  *  K  F  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="53061" PGL_stop="47800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53061" e_stop="52531"/>
            <exon e_start="48154" e_stop="48099"/>
            <exon e_start="47820" e_stop="47800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.928"/>
          <exon-intron don_prob="0.000" acc_prob="0.902" e_score="0.661"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="53061" e_stop="52531" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52530" i_stop="48155" i_length="4376"/>
          </intron>
          <exon e_serial="2" e_score="0.661">
            <gDNA_exon_boundary e_start="48154" e_stop="48099" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="48098" i_stop="47821" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="0.429">
            <gDNA_exon_boundary e_start="47820" e_stop="47800" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53061" stop="52531"/>
              <exon start="48154" stop="48099"/>
              <exon start="47820" stop="47800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712465" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGGATCTTTTTCTCCTTCCTATGTGGAAAAATAAAAGTCCAATTTGGACCAATCCATTTTTGCCCATAGGCCTATTCTTATTAGGCAAATATAAGAATATTTAGGTCTTATTTTCAAATACACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCAC : ATAAATTGCAAAAAAATAAAAATAAAAAGGTTAAAAAAAATAAAATACCATGAGTA : GATCGTGTGATCCTCTTCTAA</gDNA_template>
            <first_frame> L  W  I  F  F  S  F  L  C  G  K  I  K  V  Q  F  G  P  I  H  F  C  P  *  A  Y  S  Y  *  A  N  I  R  I  F  R  S  Y  F  Q  I  H  R  E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  V  F  G  G  L  Q  L  Q  F  C  C  R  E  *  *  L  R  N  *  *  F  C  S  F  N  P  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  :  I  N  C  K  K  I  K  I  K  R  L  K  K  I  K  Y  H  E  * :   I  V  *  S  S  S   </first_frame>
            <second_frame>  Y  G  S  F  S  P  S  Y  V  E  K  *  K  S  N  L  D  Q  S  I  F  A  H  R  P  I  L  I  R  Q  I  *  E  Y  L  G  L  I  F  K  Y  T  E  S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  Q  K  F  S  P  N  S  Q  L  Q  I  A  I  L  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  Y  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  S  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T :   *  I  A  K  K  *  K  *  K  G  *  K  K  *  N  T  M  S   : R  S  C  D  P  L  L  </second_frame>
            <third_frame>   M  D  L  F  L  L  P  M  W  K  N  K  S  P  I  W  T  N  P  F  L  P  I  G  L  F  L  L  G  K  Y  K  N  I  *  V  L  F  S  N  T  Q  R  V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  K  N  S  A  L  T  A  N  F  K  L  R  F  S  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  I  W  W  P  A  A  S  V  L  L  S  *  I  V  A  A  K  L  V  I  L  L  L  *  S  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P   : H  K  L  Q  K  N  K  N  K  K  V  K  K  N  K  I  P  *  V  :  D  R  V  I  L  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52698" stop="52531"/>
                    <exon start="48154" stop="47820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNPLDLVQSYFVVARCLALVLWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHINCKKIKIKRLKKIKYHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="48217" PGL_stop="49234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48217" e_stop="48260"/>
            <exon e_start="48675" e_stop="49234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.957" e_score="0.969"/>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="48217" e_stop="48260" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.957">
            <gDNA_intron_boundary i_start="48261" i_stop="48674" i_length="414"/>
          </intron>
          <exon e_serial="2" e_score="0.913">
            <gDNA_exon_boundary e_start="48675" e_stop="49234" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48217" stop="48260"/>
              <exon start="48675" stop="49107"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48229" stop="48260"/>
              <exon start="48675" stop="49234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGGATTACAGTCCCAAACCCTAATCAGCCGACTTTTACCTCCG : GGTTGAAAACAATGATGCTTGCATGCTGTGGCATTGGTGTTCTACTGTTTTAAGCAAAATTTAACATCCCAGGGTTGCAAAATACGGTCTTTAATTTAAAGCCTTTCGCTATTGATTTCAGGCAGCCATGGATGGAAATGGCGGAATGCATATACGAAATTGGAGTTATTTTGAGCCAACACCAACGGTTCCGAAGGGCCATTTGGGCCTGCAATTCGTGTCCTCGATGAATGAAAAGCCCCCTCATTTTCGCAACATTCATGATAATCACCAACAACAACAACAATCCCACCAACCTGACCATCCTTCAGTTATGGCGTCGACTAATGGTGGTGCATTTCATCATCATCGGGTTTGTGGGCTCTCGGAGTCTCCCATGCCCATGGAGTACATGAGGGATTCATGGGTTAATCAAAAAGACTATAGAGAGAAGTATCTCAATGTGCTATCTGCAAACCACCCTTATCTTCCAGGTTTTGGGTTTTTGCCTGAGACATCTTCTGCTCAGTCTATGCAGATGCACCAGCAGCCAAACTTGGTGAAAGTTGAAACTGCTCCTC</gDNA_template>
            <first_frame> G  D  Y  S  P  K  P  *  S  A  D  F  Y  L  R :   V  E  N  N  D  A  C  M  L  W  H  W  C  S  T  V  L  S  K  I  *  H  P  R  V  A  K  Y  G  L  *  F  K  A  F  R  Y  *  F  Q  A  A  M  D  G  N  G  G  M  H  I  R  N  W  S  Y  F  E  P  T  P  T  V  P  K  G  H  L  G  L  Q  F  V  S  S  M  N  E  K  P  P  H  F  R  N  I  H  D  N  H  Q  Q  Q  Q  Q  S  H  Q  P  D  H  P  S  V  M  A  S  T  N  G  G  A  F  H  H  H  R  V  C  G  L  S  E  S  P  M  P  M  E  Y  M  R  D  S  W  V  N  Q  K  D  Y  R  E  K  Y  L  N  V  L  S  A  N  H  P  Y  L  P  G  F  G  F  L  P  E  T  S  S  A  Q  S  M  Q  M  H  Q  Q  P  N  L  V  K  V  E  T  A  P  </first_frame>
            <second_frame>  G  I  T  V  P  N  P  N  Q  P  T  F  T  S   : G  L  K  T  M  M  L  A  C  C  G  I  G  V  L  L  F  *  A  K  F  N  I  P  G  L  Q  N  T  V  F  N  L  K  P  F  A  I  D  F  R  Q  P  W  M  E  M  A  E  C  I  Y  E  I  G  V  I  L  S  Q  H  Q  R  F  R  R  A  I  W  A  C  N  S  C  P  R  *  M  K  S  P  L  I  F  A  T  F  M  I  I  T  N  N  N  N  N  P  T  N  L  T  I  L  Q  L  W  R  R  L  M  V  V  H  F  I  I  I  G  F  V  G  S  R  S  L  P  C  P  W  S  T  *  G  I  H  G  L  I  K  K  T  I  E  R  S  I  S  M  C  Y  L  Q  T  T  L  I  F  Q  V  L  G  F  C  L  R  H  L  L  L  S  L  C  R  C  T  S  S  Q  T  W  *  K  L  K  L  L  L </second_frame>
            <third_frame>   G  L  Q  S  Q  T  L  I  S  R  L  L  P  P  :  G  *  K  Q  *  C  L  H  A  V  A  L  V  F  Y  C  F  K  Q  N  L  T  S  Q  G  C  K  I  R  S  L  I  *  S  L  S  L  L  I  S  G  S  H  G  W  K  W  R  N  A  Y  T  K  L  E  L  F  *  A  N  T  N  G  S  E  G  P  F  G  P  A  I  R  V  L  D  E  *  K  A  P  S  F  S  Q  H  S  *  *  S  P  T  T  T  T  I  P  P  T  *  P  S  F  S  Y  G  V  D  *  W  W  C  I  S  S  S  S  G  L  W  A  L  G  V  S  H  A  H  G  V  H  E  G  F  M  G  *  S  K  R  L  *  R  E  V  S  Q  C  A  I  C  K  P  P  L  S  S  R  F  W  V  F  A  *  D  I  F  C  S  V  Y  A  D  A  P  A  A  K  L  G  E  S  *  N  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48790" stop="49233"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQAAMDGNGGMHIRNWSYFEPTPTVPKGHLGLQFVSSMNEKPPHFRNIHDNHQQQQQSHQPDHPSVMASTNGGAFHHHRVCGLSESPMPMEYMRDSWVNQKDYREKYLNVLSANHPYLPGFGFLPETSSAQSMQMHQQPNLVKVETAP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="51902" PGL_stop="52342"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51902" e_stop="52342"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="51902" e_stop="52342" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51902" stop="52342"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGTTGGGTTTTATTTGCCCTAAATTTCTTACCATAAATAGGTTTTCCTTGTAGGAAAAGGTTTTGGATTGACTAATCCTTTTCTTGTAGAAAAAGGTTTAGGACTCTATAAATAGAGGCATGTTGTTCCTTCTAACTTAATCAGCATTCACAATGTAGTCTTAAGGGCTTTGAGAGTTTTGGTTAGAGGGAGAATTTGTGGATCACAAGCTTGATACGTTATCACTTGTGTGAACCTCTCATGTATTCCGAGTGAATTGGTTGAGGTTGTTTCTCTCTGTATTTTGTACTCTCATATTTATAGTGGATTGCTCATCTCCTTTGTGGACGTAGGTCGATTGACCGAACCACGTTAAATCTCTGTGTCTTTTGGTATATTTCTCATTGTCTTCTTACTCGTGGTCTTTCGAGGTTTGCTTTGCTACCTTCCGCGTTTACACC</gDNA_template>
            <first_frame> L  L  G  F  I  C  P  K  F  L  T  I  N  R  F  S  L  *  E  K  V  L  D  *  L  I  L  F  L  *  K  K  V  *  D  S  I  N  R  G  M  L  F  L  L  T  *  S  A  F  T  M  *  S  *  G  L  *  E  F  W  L  E  G  E  F  V  D  H  K  L  D  T  L  S  L  V  *  T  S  H  V  F  R  V  N  W  L  R  L  F  L  S  V  F  C  T  L  I  F  I  V  D  C  S  S  P  L  W  T  *  V  D  *  P  N  H  V  K  S  L  C  L  L  V  Y  F  S  L  S  S  Y  S  W  S  F  E  V  C  F  A  T  F  R  V  Y  T </first_frame>
            <second_frame>  C  W  V  L  F  A  L  N  F  L  P  *  I  G  F  P  C  R  K  R  F  W  I  D  *  S  F  S  C  R  K  R  F  R  T  L  *  I  E  A  C  C  S  F  *  L  N  Q  H  S  Q  C  S  L  K  G  F  E  S  F  G  *  R  E  N  L  W  I  T  S  L  I  R  Y  H  L  C  E  P  L  M  Y  S  E  *  I  G  *  G  C  F  S  L  Y  F  V  L  S  Y  L  *  W  I  A  H  L  L  C  G  R  R  S  I  D  R  T  T  L  N  L  C  V  F  W  Y  I  S  H  C  L  L  T  R  G  L  S  R  F  A  L  L  P  S  A  F  T   </second_frame>
            <third_frame>   V  G  F  Y  L  P  *  I  S  Y  H  K  *  V  F  L  V  G  K  G  F  G  L  T  N  P  F  L  V  E  K  G  L  G  L  Y  K  *  R  H  V  V  P  S  N  L  I  S  I  H  N  V  V  L  R  A  L  R  V  L  V  R  G  R  I  C  G  S  Q  A  *  Y  V  I  T  C  V  N  L  S  C  I  P  S  E  L  V  E  V  V  S  L  C  I  L  Y  S  H  I  Y  S  G  L  L  I  S  F  V  D  V  G  R  L  T  E  P  R  *  I  S  V  S  F  G  I  F  L  I  V  F  L  L  V  V  F  R  G  L  L  C  Y  L  P  R  L  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="52518" PGL_stop="52944"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52518" e_stop="52944"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="52518" e_stop="52944" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52518" stop="52944"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTGGCCACAAAACAAGTGCCAAACAACGAGCAACAACAAAATAAGATTGCACCAAATCTAGAGGATTAAAGGAGCAAAATCACTAATTTCGCAGCTACTATTCACGACAGCAAAACTGAAGCTGCAGGCCACCAAATACCAACTCTGTCAGTTCCTAATCAAAGATTGAGATGAAGATAATATGCTGTCCAAAAATCAGCTCAATCGGACAAGAAACGAAGCGAGAATCGCAATTTGAAGTTGGCTGTTAGGGCTGAATTTTTGACTGCGAAAAACTGCTCTTTTTCTCTCTTTTTGGCTGCTGAAAAAACTCTCTGTGTATTTG</gDNA_template>
            <first_frame> H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L  A  T  K  Q  V  P  N  N  E  Q  Q  Q  N  K  I  A  P  N  L  E  D  *  R  S  K  I  T  N  F  A  A  T  I  H  D  S  K  T  E  A  A  G  H  Q  I  P  T  L  S  V  P  N  Q  R  L  R  *  R  *  Y  A  V  Q  K  S  A  Q  S  D  K  K  R  S  E  N  R  N  L  K  L  A  V  R  A  E  F  L  T  A  K  N  C  S  F  S  L  F  L  A  A  E  K  T  L  C  V  F  </first_frame>
            <second_frame>  T  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N  W  P  Q  N  K  C  Q  T  T  S  N  N  K  I  R  L  H  Q  I  *  R  I  K  G  A  K  S  L  I  S  Q  L  L  F  T  T  A  K  L  K  L  Q  A  T  K  Y  Q  L  C  Q  F  L  I  K  D  *  D  E  D  N  M  L  S  K  N  Q  L  N  R  T  R  N  E  A  R  I  A  I  *  S  W  L  L  G  L  N  F  *  L  R  K  T  A  L  F  L  S  F  W  L  L  K  K  L  S  V  Y  L </second_frame>
            <third_frame>   P  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  G  H  K  T  S  A  K  Q  R  A  T  T  K  *  D  C  T  K  S  R  G  L  K  E  Q  N  H  *  F  R  S  Y  Y  S  R  Q  Q  N  *  S  C  R  P  P  N  T  N  S  V  S  S  *  S  K  I  E  M  K  I  I  C  C  P  K  I  S  S  I  G  Q  E  T  K  R  E  S  Q  F  E  V  G  C  *  G  *  I  F  D  C  E  K  L  L  F  F  S  L  F  G  C  *  K  N  S  L  C  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="69450" PGL_stop="68192"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69450" e_stop="69268"/>
            <exon e_start="69160" e_stop="69025"/>
            <exon e_start="68617" e_stop="68192"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.476" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69450" e_stop="69268" e_length="183"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69160" e_stop="69025" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.476">
            <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.993">
            <gDNA_exon_boundary e_start="68617" e_stop="68192" e_length="426"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69450" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69449" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E620837" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69449" stop="69268"/>
              <exon start="69160" stop="69112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69446" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69443" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69443" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420149" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69438" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340222" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69433" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325863" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69433" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69428" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68192"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69427" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69379" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG : GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG : GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTATTAGC</gDNA_template>
            <first_frame> *  N  Q  E  S  E  K  K  K  I  Y  *  N  G  N  T  K  G  Y  G  N  P  P  S  *  T  C  H  Y  V  V  V  R  S  F  S  T  N  H  D  Y  Q  Q  L  P  T  *  W  R  R  K  N  *  I  Q  *  R  *  G  L  Q  :  V  R  G  S  S  G  T  S  W  I  Y  L  L  I  D  S  T  A  I  C  I  V  L  R  R  D  R  E  K  S  F  S  W  Q  L  P  W  P  L  G  F  F  R  R  *   : G  A  K  F  F  P  S  K  W  S  W  C  W  F  W  C  *  F  *  A  Q  T  L  R  K  W  I  C  R  H  N  *  N  N  W  D  R  Y  I  R  R  V  E  E  E  E  S  N  I  L  R  *  R  S  F  S  N  Y  S  T  S  C  W  I  W  Y  H  G  C  A  H  H  Y  Y  F  I  P  S  Q  I  K  I  A  T  L  E  C  S  E  K  *  T  L  S  I  V  V  *  F  A  C  D  R  C  L  N  N  L  C  V  L  S  L  K  M  Q  *  *  *  *  Y  V  Y  V  L  C  F  N  E  Y  Q  E  M  E  M  Y  *  Y  Y  C  Y  *  </first_frame>
            <second_frame>  K  I  K  R  V  K  K  K  R  F  I  K  M  E  T  P  R  A  M  A  I  L  L  L  R  L  V  T  M  L  L  C  G  A  S  V  P  I  M  I  T  N  S  F  Q  L  S  G  G  E  K  T  K  Y  S  D  V  K  G  Y  R :   Y  V  V  A  A  A  L  V  G  S  I  Y  S  L  I  Q  L  P  F  A  L  Y  Y  A  V  T  G  K  R  V  F  H  G  N  F  L  G  R  L  D  F  F  V  D  K  :  V  L  S  F  F  L  A  S  G  V  G  V  G  F  G  V  S  S  E  L  K  R  Y  V  N  G  F  V  D  T  I  E  T  T  G  I  D  T  F  E  E  L  R  K  K  S  L  I  F  F  D  R  G  H  L  A  T  T  P  L  L  A  G  F  G  T  M  A  V  L  T  I  I  T  S  Y  H  R  K  *  R  S  L  H  L  S  V  V  K  N  K  R  *  V  L  L  F  N  S  R  V  I  V  V  *  I  I  C  V  C  *  V  *  R  C  N  N  N  N  N  M  C  M  Y  F  V  S  M  N  I  K  K  W  K  C  T  S  T  I  A  I  S </second_frame>
            <third_frame>   K  S  R  E  *  K  K  K  D  L  L  K  W  K  H  Q  G  L  W  Q  S  S  F  L  D  L  S  L  C  C  C  A  E  L  Q  Y  Q  S  *  L  P  T  A  S  N  L  V  E  E  K  K  L  N  T  V  T  L  R  A  T   : G  T  W  *  Q  R  H  *  L  D  L  S  T  H  *  F  N  C  H  L  H  C  I  T  P  *  Q  G  K  E  F  F  M  A  T  S  L  A  A  W  I  F  S  *  I  R :   C  *  V  F  S  *  Q  V  E  L  V  L  V  L  V  L  V  L  S  S  N  V  T  *  M  D  L  *  T  Q  L  K  Q  L  G  S  I  H  S  K  S  *  G  R  R  V  *  Y  S  S  I  E  V  I  *  Q  L  L  H  F  L  L  D  L  V  P  W  L  C  S  P  L  L  L  H  T  I  A  N  K  D  R  Y  T  *  V  *  *  K  I  N  V  E  Y  C  C  L  I  R  V  *  S  L  F  K  *  F  V  C  V  E  F  E  D  A  I  I  I  I  I  C  V  C  T  L  F  Q  *  I  S  R  N  G  N  V  L  V  L  L  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69449" stop="69268"/>
                    <exon start="69160" stop="69025"/>
                    <exon start="68617" stop="68378"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKRVKKKRFIKMETPRAMAILLLRLVTMLLCGASVPIMITNSFQLSGGEKTKYSDVKGYRYVVAAALVGSIYSLIQLPFALYYAVTGKRVFHGNFLGRLDFFVDKVLSFFLASGVGVGFGVSSELKRYVNGFVDTIETTGIDTFEELRKKSLIFFDRGHLATTPLLAGFGTMAVLTIITSYHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="81110" PGL_stop="85259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81110" e_stop="81152"/>
            <exon e_start="81234" e_stop="81512"/>
            <exon e_start="84031" e_stop="84174"/>
            <exon e_start="84828" e_stop="85223"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81110" e_stop="81152" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81153" i_stop="81233" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81234" e_stop="81512" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84031" e_stop="84174" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="84828" e_stop="85223" e_length="396"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81110" stop="81152"/>
              <exon start="81234" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="85223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E716210" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81234" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="85075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81341" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="84878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAG : TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT : GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA : GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTA</gDNA_template>
            <first_frame> R  S  W  W  R  S  L  L  Y  H  A  K  T  A   : V  N  H  N  S  V  F  R  G  S  S  V  L  A  W  P  R  T  H  T  L  *  F  E  A  R  K  H  I  G  E  K  L  Q  *  M  *  G  E  G  N  *  S  G  *  Q  L  F  *  N  R  S  S  L  F  L  R  P  I  K  V  L  P  C  T  R  S  Y  F  R  A  S  L  *  *  K  D  R  Y  L  V  P  W  L  H  F  G  R  T  L  H  G  Q   : C  P  F  P  E  *  L  S  C  H  V  T  C  K  G  T  W  Y  H  R  S  D  *  P  R  D  A  C  Q  R  T  R  H  L  Q  I  F  H  Q  K  S  H  A  I  *  T  K  S   : R  N  K  Q  N  G  I  L  N  T  Q  K  D  I  L  E  V  S  I  A  N  G  R  S  R  F  R  *  F  C  G  S  S  F  R  S  *  P  K  D  A  A  F  C  L  G  G  S  K  T  S  M  A  I  I  S  I  *  A  N  I  I  V  S  H  V  R  S  L  G  S  E  G  V  F  Y  W  F  D  L  D  S  P  V  V  I  Y  E  E  S  C  P  S  W  V  V  F  L  A  N  T  Y  R  V  L  C  N  I  K  I  F  P  F  L  P  R  L  F  L  V  A  A  N  A  F  C  L  Y  M  M  S  T  </first_frame>
            <second_frame>  E  A  G  G  E  V  Y  F  T  M  P  R  L  Q  :  S  I  T  I  Q  C  L  E  A  L  Q  F  L  H  G  L  G  L  I  H  C  D  L  K  P  E  N  I  L  V  K  S  Y  S  R  C  E  V  K  V  I  D  L  G  S  S  C  F  E  T  D  H  L  C  S  Y  V  Q  S  R  S  Y  R  A  P  E  V  I  L  G  L  P  Y  D  K  K  I  D  I  W  S  L  G  C  I  L  A  E  L  C  T  G  N  :  V  L  F  Q  N  D  S  P  A  T  L  L  A  R  V  L  G  I  T  G  P  I  D  Q  E  M  L  V  K  G  R  D  T  Y  K  Y  F  T  K  N  H  M  L  Y  E  R  N  Q  :  E  T  N  R  M  E  Y  L  I  P  K  K  T  S  L  R  Y  R  L  P  M  G  D  Q  G  F  V  D  F  V  A  H  L  L  E  V  N  P  K  T  R  P  S  A  L  E  A  L  K  H  P  W  L  S  Y  P  Y  E  P  I  S  S  *  V  M  *  D  L  L  A  L  K  V  F  S  I  G  L  I  W  I  L  Q  W  *  Y  M  K  K  V  V  Q  A  G  L  Y  F  *  L  T  H  I  E  C  Y  V  T  S  R  F  S  L  F  F  L  V  F  F  W  S  Q  Q  M  R  S  V  C  T  *  C  L  L </second_frame>
            <third_frame>   K  L  V  E  K  S  T  L  P  C  Q  D  C  S :   Q  S  Q  F  S  V  *  R  L  F  S  S  C  M  A  S  D  S  Y  I  V  I  *  S  P  K  T  Y  W  *  K  A  T  V  D  V  R  *  R  *  L  I  W  V  A  V  V  L  K  Q  I  I  F  V  L  T  S  N  Q  G  P  T  V  H  Q  K  L  F  *  G  F  L  M  I  K  R  *  I  F  G  P  L  A  A  F  W  Q  N  F  A  R  A  M :   S  F  S  R  M  T  L  L  P  R  Y  L  Q  G  Y  L  V  S  Q  V  R  L  T  K  R  C  L  S  K  D  E  T  L  T  N  I  S  P  K  I  T  C  Y  M  N  E  I  K :   K  Q  T  E  W  N  T  *  Y  P  K  R  H  P  *  G  I  D  C  Q  W  E  I  K  V  S  L  I  L  W  L  I  F  *  K  L  T  Q  R  R  G  L  L  P  W  R  L  *  N  I  H  G  Y  H  I  H  M  S  Q  Y  H  R  E  S  C  E  I  S  W  L  *  R  C  F  L  L  V  *  F  G  F  S  S  G  D  I  *  R  K  L  S  K  L  G  C  I  S  S  *  H  I  *  S  V  M  *  H  Q  D  F  P  F  S  S  S  S  F  F  G  R  S  K  C  V  L  F  V  H  D  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81111" stop="81152"/>
                    <exon start="81234" stop="81512"/>
                    <exon start="84031" stop="84174"/>
                    <exon start="84828" stop="85016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVLGITGPIDQEMLVKGRDTYKYFTKNHMLYERNQETNRMEYLIPKKTSLRYRLPMGDQGFVDFVAHLLEVNPKTRPSALEALKHPWLSYPYEPISS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85001" stop="85222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANIIVSHVRSLGSEGVFYWFDLDSPVVIYEESCPSWVVFLANTYRVLCNIKIFPFLPRLFLVAANAFCLYMMST</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="81233" e_stop="81512"/>
            <exon e_start="84031" e_stop="84174"/>
            <exon e_start="84828" e_stop="85259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81233" e_stop="81512" e_length="280"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="84031" e_stop="84174" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="84828" e_stop="85259" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81233" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="85259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81234" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="85075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81341" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="84878"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT : GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA : GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</gDNA_template>
            <first_frame> V  N  H  N  S  V  F  R  G  S  S  V  L  A  W  P  R  T  H  T  L  *  F  E  A  R  K  H  I  G  E  K  L  Q  *  M  *  G  E  G  N  *  S  G  *  Q  L  F  *  N  R  S  S  L  F  L  R  P  I  K  V  L  P  C  T  R  S  Y  F  R  A  S  L  *  *  K  D  R  Y  L  V  P  W  L  H  F  G  R  T  L  H  G  Q   : C  P  F  P  E  *  L  S  C  H  V  T  C  K  G  T  W  Y  H  R  S  D  *  P  R  D  A  C  Q  R  T  R  H  L  Q  I  F  H  Q  K  S  H  A  I  *  T  K  S   : R  N  K  Q  N  G  I  L  N  T  Q  K  D  I  L  E  V  S  I  A  N  G  R  S  R  F  R  *  F  C  G  S  S  F  R  S  *  P  K  D  A  A  F  C  L  G  G  S  K  T  S  M  A  I  I  S  I  *  A  N  I  I  V  S  H  V  R  S  L  G  S  E  G  V  F  Y  W  F  D  L  D  S  P  V  V  I  Y  E  E  S  C  P  S  W  V  V  F  L  A  N  T  Y  R  V  L  C  N  I  K  I  F  P  F  L  P  R  L  F  L  V  A  A  N  A  F  C  L  Y  M  M  S  T  N  S  F  *  V  F  S  D  S  L  *  S  </first_frame>
            <second_frame>  S  I  T  I  Q  C  L  E  A  L  Q  F  L  H  G  L  G  L  I  H  C  D  L  K  P  E  N  I  L  V  K  S  Y  S  R  C  E  V  K  V  I  D  L  G  S  S  C  F  E  T  D  H  L  C  S  Y  V  Q  S  R  S  Y  R  A  P  E  V  I  L  G  L  P  Y  D  K  K  I  D  I  W  S  L  G  C  I  L  A  E  L  C  T  G  N  :  V  L  F  Q  N  D  S  P  A  T  L  L  A  R  V  L  G  I  T  G  P  I  D  Q  E  M  L  V  K  G  R  D  T  Y  K  Y  F  T  K  N  H  M  L  Y  E  R  N  Q  :  E  T  N  R  M  E  Y  L  I  P  K  K  T  S  L  R  Y  R  L  P  M  G  D  Q  G  F  V  D  F  V  A  H  L  L  E  V  N  P  K  T  R  P  S  A  L  E  A  L  K  H  P  W  L  S  Y  P  Y  E  P  I  S  S  *  V  M  *  D  L  L  A  L  K  V  F  S  I  G  L  I  W  I  L  Q  W  *  Y  M  K  K  V  V  Q  A  G  L  Y  F  *  L  T  H  I  E  C  Y  V  T  S  R  F  S  L  F  F  L  V  F  F  W  S  Q  Q  M  R  S  V  C  T  *  C  L  L  I  L  F  R  Y  L  V  I  A  C  E  A </second_frame>
            <third_frame>   Q  S  Q  F  S  V  *  R  L  F  S  S  C  M  A  S  D  S  Y  I  V  I  *  S  P  K  T  Y  W  *  K  A  T  V  D  V  R  *  R  *  L  I  W  V  A  V  V  L  K  Q  I  I  F  V  L  T  S  N  Q  G  P  T  V  H  Q  K  L  F  *  G  F  L  M  I  K  R  *  I  F  G  P  L  A  A  F  W  Q  N  F  A  R  A  M :   S  F  S  R  M  T  L  L  P  R  Y  L  Q  G  Y  L  V  S  Q  V  R  L  T  K  R  C  L  S  K  D  E  T  L  T  N  I  S  P  K  I  T  C  Y  M  N  E  I  K :   K  Q  T  E  W  N  T  *  Y  P  K  R  H  P  *  G  I  D  C  Q  W  E  I  K  V  S  L  I  L  W  L  I  F  *  K  L  T  Q  R  R  G  L  L  P  W  R  L  *  N  I  H  G  Y  H  I  H  M  S  Q  Y  H  R  E  S  C  E  I  S  W  L  *  R  C  F  L  L  V  *  F  G  F  S  S  G  D  I  *  R  K  L  S  K  L  G  C  I  S  S  *  H  I  *  S  V  M  *  H  Q  D  F  P  F  S  S  S  S  F  F  G  R  S  K  C  V  L  F  V  H  D  V  Y  *  F  F  L  G  I  *  *  *  L  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81234" stop="81512"/>
                    <exon start="84031" stop="84174"/>
                    <exon start="84828" stop="85016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>609</number_coding_nucleotides>
                  <number_encoded_amino_acids>203</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVLGITGPIDQEMLVKGRDTYKYFTKNHMLYERNQETNRMEYLIPKKTSLRYRLPMGDQGFVDFVAHLLEVNPKTRPSALEALKHPWLSYPYEPISS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85001" stop="85234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANIIVSHVRSLGSEGVFYWFDLDSPVVIYEESCPSWVVFLANTYRVLCNIKIFPFLPRLFLVAANAFCLYMMSTNSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87342" PGL_stop="85402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87342" e_stop="87252"/>
            <exon e_start="86433" e_stop="86264"/>
            <exon e_start="85870" e_stop="85402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87342" e_stop="87252" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86433" e_stop="86264" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.923">
            <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85870" e_stop="85402" e_length="469"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87342" stop="87252"/>
              <exon start="86433" stop="86264"/>
              <exon start="85870" stop="85406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87342" stop="87252"/>
              <exon start="86433" stop="86264"/>
              <exon start="85870" stop="85635"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87312" stop="87252"/>
              <exon start="86433" stop="86264"/>
              <exon start="85870" stop="85482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87312" stop="87252"/>
              <exon start="86433" stop="86264"/>
              <exon start="85870" stop="85531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E617481" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86432" stop="86264"/>
              <exon start="85870" stop="85402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380065" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86296" stop="86264"/>
              <exon start="85870" stop="85483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354044" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATG : TCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG : GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTACATG</gDNA_template>
            <first_frame> S  S  T  S  L  S  Q  I  S  Q  L  T  A  Y  *  K  S  *  I  S  S  L  L  K  T  C  E  F  S  H   : V  N  S  I  S  C  W  N  Y  H  W  C  C  C  F  G  S  *  I  L  D  K  S  V  A  K  V  Q  S  S  T  P  S  E  E  V  L  S  W  G  L  *  S  G  Y  D  T  A  R  S  S  I  D  S  R  S  *  :  G  K  C  C  L  A  E  D  Q  G  G  S  Q  E  S  N  G  S  K  S  S  R  R  R  W  Q  P  L  S  C  F  Q  D  Q  *  S  Q  G  R  V  V  R  E  N  Q  G  S  *  F  C  I  L  I  D  Q  C  V  L  Y  A  A  N  S  *  Q  L  H  D  S  Q  H  *  N  G  S  F  S  G  E  K  E  N  I  F  C  F  E  L  R  G  E  F  V  S  T  A  G  C  I  T  A  I  N  F  M  *  C  N  Q  K  Y  S  L  Q  I  V  Y  N  K  K  L  Y  I  P  V  N  Y  T  L  F  *  T  I  T  R  S  A  C  S  M  Y  A  V  G  S  S  H  L  L  L  D  L  N  *  L  H  </first_frame>
            <second_frame>  L  L  L  L  Y  L  K  F  L  S  *  L  H  I  E  N  P  E  S  H  H  C  *  R  L  A  S  F  L  M  :  S  T  P  L  V  V  G  T  T  I  G  A  A  A  L  G  A  R  Y  L  I  R  A  W  Q  R  F  K  A  A  P  R  V  R  R  F  Y  P  G  G  F  D  R  D  M  T  R  R  E  A  A  L  I  L  G  V  R :   E  S  A  V  L  Q  K  I  K  E  A  H  R  R  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  V  L  L  G  K  T  K  G  A  N  S  A  F  *  L  T  S  V  F  F  T  L  R  I  L  N  S  F  M  I  V  N  I  K  M  D  L  F  L  G  K  R  R  T  Y  S  V  S  S  *  E  V  N  L  Y  Q  Q  L  G  A  L  L  P  *  I  S  C  N  A  T  R  N  I  L  C  R  L  F  T  I  K  S  C  I  F  L  L  T  I  L  Y  F  E  P  L  L  D  L  H  V  V  C  T  Q  W  V  H  P  T  Y  C  S  T  *  T  N  Y  M </second_frame>
            <third_frame>   F  Y  F  F  I  S  N  F  S  A  D  C  I  L  K  I  L  N  L  I  I  V  E  D  L  R  V  F  S  C :   Q  L  H  *  L  L  E  L  P  L  V  L  L  L  W  E  L  D  T  *  *  E  R  G  K  G  S  K  Q  H  P  E  *  G  G  F  I  L  G  A  L  I  G  I  *  H  G  E  K  Q  H  *  F  S  E  L   : G  K  V  L  S  C  R  R  S  R  R  L  T  G  E  *  W  *  Q  I  I  Q  T  P  V  A  A  I  I  L  L  P  R  S  M  K  P  R  T  C  C  *  G  K  P  R  E  L  I  L  H  F  N  *  P  V  C  S  L  R  C  E  F  L  T  A  S  *  *  S  T  L  K  W  I  F  F  W  G  K  G  E  H  I  L  F  R  V  K  R  *  I  C  I  N  S  W  V  H  Y  C  H  K  F  H  V  M  Q  P  E  I  F  F  A  D  C  L  Q  *  K  V  V  Y  S  C  *  L  Y  S  I  L  N  H  Y  S  I  C  M  *  Y  V  R  S  G  F  I  P  P  T  A  R  L  E  L  T  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87272" stop="87252"/>
                    <exon start="86433" stop="86264"/>
                    <exon start="85870" stop="85714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLASFLMSTPLVVGTTIGAAALGARYLIRAWQRFKAAPRVRRFYPGGFDRDMTRREAALILGVRESAVLQKIKEAHRRVMVANHPDAGGSHYLASKINEAKDVLLGKTKGANSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87341" e_stop="86645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="87341" e_stop="86645" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87341" stop="86645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719715" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</gDNA_template>
            <first_frame> L  L  L  L  Y  L  K  F  L  S  *  L  H  I  E  N  P  E  S  H  H  C  *  R  L  A  S  F  L  M  V  I  N  L  L  L  L  S  L  S  L  R  I  S  V  L  G  F  Y  H  F  C  C  D  E  N  N  L  F  F  F  K  F  N  K  Y  F  M  V  S  A  C  M  Q  *  N  Q  L  C  E  L  G  W  W  I  Q  Q  S  M  F  F  F  Q  I  L  S  Q  I  *  N  *  A  P  V  *  P  Y  S  F  E  V  A  N  L  N  L  S  F  *  N  F  *  F  C  L  D  I  H  L  T  W  K  K  L  K  F  C  V  W  M  C  Q  K  R  N  F  L  E  F  I  S  R  *  N  G  Y  S  M  I  N  F  *  N  L  I  L  K  S  I  W  S  N  S  S  Y  G  K  K  V  K  F  S  I  *  D  S  Q  V  H  *  S  L  F  S  F  S  S  I  *  Y  F  *  L  H  N  *  T  S  K  H  I  V  F  C  A  S  I  I  V  D  K  C  S  G  I  V  Y  I  *  T  C  L  </first_frame>
            <second_frame>  F  Y  F  F  I  S  N  F  S  A  D  C  I  L  K  I  L  N  L  I  I  V  E  D  L  R  V  F  S  W  *  L  I  F  Y  F  F  H  F  P  *  E  F  L  F  *  D  F  I  I  F  A  V  M  K  I  I  C  F  F  L  S  L  I  S  T  S  W  *  A  P  V  C  N  E  I  S  S  V  S  L  A  G  G  Y  S  N  L  C  S  F  S  K  F  C  L  K  F  E  I  E  L  L  F  S  H  I  V  L  R  L  Q  T  *  I  *  V  F  E  I  F  S  F  V  *  T  Y  I  *  P  G  K  S  *  S  F  V  C  G  C  A  K  N  A  T  F  W  N  L  F  H  D  K  M  D  I  R  *  *  I  F  E  I  *  S  *  N  L  Y  G  Q  T  L  A  M  G  K  R  S  N  L  V  F  E  T  A  K  F  I  N  L  C  F  L  F  Q  V  Y  S  T  F  N  C  I  I  E  P  Q  S  I  L  C  F  A  L  Q  L  L  L  I  N  V  L  G  *  C  I  Y  R  P  A  * </second_frame>
            <third_frame>   S  T  S  L  S  Q  I  S  Q  L  T  A  Y  *  K  S  *  I  S  S  L  L  K  T  C  E  F  S  H  G  N  *  S  S  T  S  F  T  F  L  E  N  F  C  F  R  I  L  S  F  L  L  *  *  K  *  F  V  F  F  *  V  *  *  V  L  H  G  K  R  L  Y  A  M  K  S  A  L  *  A  W  L  V  D  T  A  I  Y  V  L  F  P  N  F  V  S  N  L  K  L  S  S  C  L  A  I  *  F  *  G  C  K  L  E  F  E  F  L  K  F  L  V  L  F  R  H  T  F  D  L  E  K  V  E  V  L  C  V  D  V  P  K  T  Q  L  F  G  I  Y  F  T  I  K  W  I  F  D  D  K  F  L  K  F  N  P  K  I  Y  M  V  K  L  *  L  W  E  K  G  Q  I  *  Y  L  R  Q  P  S  S  L  I  F  V  F  F  F  K  Y  I  V  L  L  I  A  *  L  N  L  K  A  Y  C  V  L  R  F  N  Y  C  *  *  M  F  W  D  S  V  Y  I  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="88525" PGL_stop="89543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88525" e_stop="88787"/>
            <exon e_start="88903" e_stop="88968"/>
            <exon e_start="89103" e_stop="89191"/>
            <exon e_start="89401" e_stop="89543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88525" e_stop="88787" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.963">
            <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88903" e_stop="88968" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89103" e_stop="89191" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.982">
            <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89401" e_stop="89543" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88525" stop="88787"/>
              <exon start="88903" stop="88968"/>
              <exon start="89103" stop="89191"/>
              <exon start="89401" stop="89510"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88531" stop="88787"/>
              <exon start="88903" stop="88968"/>
              <exon start="89103" stop="89191"/>
              <exon start="89401" stop="89543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333449" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88538" stop="88787"/>
              <exon start="88903" stop="88968"/>
              <exon start="89103" stop="89191"/>
              <exon start="89401" stop="89542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329139" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88582" stop="88787"/>
              <exon start="88903" stop="88968"/>
              <exon start="89103" stop="89191"/>
              <exon start="89401" stop="89541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAATAGATAATAACAATTCATCCGCGAAAAGAGGGATTGGATTTGATCAAGCTCGCTCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG : GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG : GATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA : TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</gDNA_template>
            <first_frame> T  I  D  N  N  N  S  S  A  K  R  G  I  G  F  D  Q  A  R  S  V  S  S  G  S  E  I  G  I  L  L  L  V  F  A  F  T  G  I  P  I  S  G  S  S  Q  *  S  T  F  H  T  *  L  P  C  P  P  I  S  A  M  A  C  S  L  P  L  A  N  F  V  I  S  S  E  K  Y  S  I  G  G  T  P  V  I  F  R :   D  M  H  L  S  A  *  D  *  K  I  S  I  F  V  G  C  I  F  A  F  R :   I  V  L  E  G  Q  Y  A  V  L  L  M  L  G  L  T  W  *  S  V  Y  P  M  I  I  T  R  H  *   : I  G  P  Q  K  F  Q  G  A  *  T  W  D  H  I  I  T  L  V  L  L  L  L  M  N  I  V  P  R  V  L  L  S  L  *  K  H  F  P  Q  A  H  A  V  P  V  L  M </first_frame>
            <second_frame>  Q  *  I  I  T  I  H  P  R  K  E  G  L  D  L  I  K  L  A  L  F  H  L  D  R  R  S  E  F  S  F  *  C  S  P  S  P  A  F  R  S  P  A  V  H  N  D  Q  H  S  I  L  D  C  L  V  H  L  F  Q  L  W  L  A  L  C  L  W  P  I  S  *  F  L  Q  K  N  I  R  L  V  E  R  Q  *  S  S   : G  I  C  T  Y  L  L  R  T  R  R  F  L  Y  S  S  V  V  S  S  H  S   : G  L  F  W  K  A  N  M  Q  S  S  *  C  L  V  *  R  G  R  A  C  I  Q  *  *  *  Q  D  T  K  :  S  D  H  K  S  F  K  V  P  E  L  G  I  I  *  L  P  W  F  C  F  F  *  *  I  L  Y  P  A  C  Y  *  V  F  E  N  I  F  R  K  H  M  Q  Y  P  C  *   </second_frame>
            <third_frame>   N  R  *  *  Q  F  I  R  E  K  R  D  W  I  *  S  S  S  L  C  F  I  W  I  G  D  R  N  S  P  S  S  V  R  L  H  R  H  S  D  L  R  Q  F  T  M  I  N  I  P  Y  L  T  A  L  S  T  Y  F  S  Y  G  L  L  F  A  F  G  Q  F  R  D  F  F  R  K  I  F  D  W  W  N  A  S  N  L  Q  :  G  Y  A  P  I  C  L  G  L  E  D  F  Y  I  R  R  L  Y  L  R  I  Q  :  D  C  F  G  R  P  I  C  S  P  P  D  A  W  F  D  V  V  E  R  V  S  N  D  N  N  K  T  L  N :   R  T  T  K  V  S  R  C  L  N  L  G  S  Y  N  Y  L  G  F  A  S  S  D  E  Y  C  T  P  R  V  I  E  S  L  K  T  F  S  A  S  T  C  S  T  R  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88572" stop="88787"/>
                    <exon start="88903" stop="88968"/>
                    <exon start="89103" stop="89191"/>
                    <exon start="89401" stop="89542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSLCFIWIGDRNSPSSVRLHRHSDLRQFTMINIPYLTALSTYFSYGLLFAFGQFRDFFRKIFDWWNASNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPICSPPDAWFDVVERVSNDNNKTLNRTTKVSRCLNLGSYNYLGFASSDEYCTPRVIESLKTFSASTCSTRVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="90080" PGL_stop="92822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90080" e_stop="90179"/>
            <exon e_start="90360" e_stop="90521"/>
            <exon e_start="91250" e_stop="91376"/>
            <exon e_start="91491" e_stop="91657"/>
            <exon e_start="91778" e_stop="91885"/>
            <exon e_start="92205" e_stop="92822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.980" acc_prob="0.841" e_score="0.981"/>
          <exon-intron don_prob="0.915" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="90080" e_stop="90179" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90180" i_stop="90359" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="90360" e_stop="90521" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.841">
            <gDNA_intron_boundary i_start="90522" i_stop="91249" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91250" e_stop="91376" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.873">
            <gDNA_intron_boundary i_start="91377" i_stop="91490" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="91491" e_stop="91657" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91658" i_stop="91777" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91778" e_stop="91885" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91886" i_stop="92204" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="92205" e_stop="92822" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90080" stop="90179"/>
              <exon start="90360" stop="90521"/>
              <exon start="91250" stop="91376"/>
              <exon start="91491" stop="91657"/>
              <exon start="91778" stop="91885"/>
              <exon start="92205" stop="92332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549465" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90081" stop="90179"/>
              <exon start="90360" stop="90521"/>
              <exon start="91250" stop="91376"/>
              <exon start="91491" stop="91547"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361544" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92232" stop="92822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547008" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGCATATATAGTATGGAAGGGGAGCTTTGCCAACTGCCAGAGATTGTTGCGATATGCAAGAAGTACAAG : GCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGACACTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTACATTGCAGGATCAAAG : GAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAG : GGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTTGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAA : GTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAG : GTTATCAGCGAAGTTGGTGATCTAGTGGGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAACTTTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAAGTGCCAAGTCGTGAATATTTTGTTCTCTCAAAACAAAAATAGAGAAATGACATGGAAAAAGTAAATCTTCAATATTGACTCACAAATTGCTGGAGGAAACTAAAGAGTAGTAGTGAAAAGACAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTGCTTTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACGGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACACAGTTTTAGTAG</gDNA_template>
            <first_frame> T  M  E  E  D  N  R  C  G  R  G  H  I  *  Y  G  R  G  A  L  P  T  A  R  D  C  C  D  M  Q  E  V  Q   : G  I  C  V  S  G  *  G  S  *  H  W  S  S  W  K  N  W  K  G  G  L  *  A  L  R  S  *  H  C  R  C  G  D  Y  D  G  N  F  Y  K  V  I  W  I  M  W  G  L  H  C  R  I  K   : G  T  Y  *  I  S  E  V  H  L  P  S  S  S  L  R  H  I  N  I  T  S  S  C  P  T  N  N  F  F  Y  Q  C  Y  T  W  *  R  W  F  *  *  R :   G  S  E  A  S  T  D  T  *  K  *  Q  L  F  P  L  *  I  T  E  D  G  L  *  G  S  W  G  Q  *  F  S  S  H  A  H  Y  A  L  Q  S  S  K  N  T  C  F  F  T  G  V  S  Q  T  K   : S  G  S  S  D  S  C  F  S  S  Y  S  F  T  T  G  Q  S  T  N  L  H  I  C  C  S  L  K  G  *  S  Y  *  S  A  R   : G  Y  Q  R  S  W  *  S  S  G  H  *  I  L  P  C  R  A  Q  Q  R  A  A  R  S  K  Q  S  Q  A  G  M  S  *  V  S  E  L  I  Q  S  S  M  I  R  L  *  D  E  K  F  *  H  F  L  T  F  C  I  Q  S  V  V  T  Y  Y  M  G  *  S  Y  L  S  L  M  L  H  E  R  D  A  A  K  C  Q  V  V  N  I  L  F  S  Q  N  K  N  R  E  M  T  W  K  K  *  I  F  N  I  D  S  Q  I  A  G  G  N  *  R  V  V  V  K  R  Q  *  Q  H  C  N  K  K  G  K  K  Q  T  C  L  S  V  F  T  V  K  M  R  S  S  K  T  *  T  S  I  R  K  I  F  E  S  Y  N  S  A  C  F  A  L  F  L  S  F  M  L  F  A  S  I  S  F  *  N  L  L  N  G  *  R  M  D  F  Q  L  I  *  R  F  A  M  L  V  Y  T  V  L  V  </first_frame>
            <second_frame>  P  W  K  K  I  I  V  V  V  E  G  I  Y  S  M  E  G  E  L  C  Q  L  P  E  I  V  A  I  C  K  K  Y  K  :  A  Y  V  Y  L  D  E  A  H  S  I  G  A  V  G  R  T  G  R  G  V  C  E  L  L  G  V  D  T  A  D  V  E  I  M  M  G  T  F  T  K  S  F  G  S  C  G  G  Y  I  A  G  S  K  :  E  L  I  E  Y  L  K  Y  T  C  P  A  H  L  Y  A  T  S  I  S  P  P  A  A  Q  Q  I  I  S  S  I  N  V  I  L  G  E  D  G  S  S  R   : G  A  Q  K  L  A  Q  I  R  E  N  S  N  F  F  R  S  E  L  Q  K  M  G  F  E  V  L  G  D  N  D  S  P  V  M  P  I  M  L  Y  N  P  A  K  I  P  A  F  S  R  E  C  L  K  R  K  :  V  A  V  V  T  V  A  F  P  A  T  P  L  L  L  A  R  A  R  I  C  I  S  A  A  H  S  R  D  D  L  I  K  A  L  E  :  V  I  S  E  V  G  D  L  V  G  I  K  Y  F  P  V  E  P  N  K  E  Q  L  E  A  N  R  V  K  L  E  *  V  K  F  Q  N  *  F  N  Q  A  *  Y  V  F  R  M  R  S  F  D  T  F  *  L  F  V  Y  K  V  L  S  R  T  T  W  D  S  L  I  F  L  L  C  F  T  K  G  M  L  Q  S  A  K  S  *  I  F  C  S  L  K  T  K  I  E  K  *  H  G  K  S  K  S  S  I  L  T  H  K  L  L  E  E  T  K  E  *  *  *  K  D  N  S  N  T  V  T  R  R  A  R  S  K  L  A  S  L  Y  S  L  S  R  *  E  V  Q  K  H  E  R  Q  S  E  R  S  L  N  H  I  I  Q  L  A  L  L  C  F  C  L  L  C  Y  L  L  A  L  V  S  E  T  C  *  T  V  K  E  W  T  F  S  *  Y  E  G  L  Q  C  L  Y  T  Q  F  *  * </second_frame>
            <third_frame>   H  G  R  R  *  S  L  W  S  R  A  Y  I  V  W  K  G  S  F  A  N  C  Q  R  L  L  R  Y  A  R  S  T  R :   H  M  C  I  W  M  R  L  I  A  L  E  Q  L  E  E  L  E  G  G  S  V  S  S  *  E  L  T  L  Q  M  W  R  L  *  W  E  L  L  Q  S  H  L  D  H  V  G  V  T  L  Q  D  Q  R :   N  L  L  N  I  *  S  T  L  A  Q  L  I  F  T  P  H  Q  Y  H  L  Q  L  P  N  K  *  F  L  L  S  M  L  Y  L  V  K  M  V  L  V  E  :  G  L  R  S  *  H  R  Y  V  K  I  A  T  F  S  A  L  N  Y  R  R  W  A  L  R  F  L  G  T  M  I  L  Q  S  C  P  L  C  S  T  I  Q  Q  K  Y  L  L  F  H  G  S  V  S  N  E  K :   W  Q  *  *  Q  L  L  F  Q  L  L  L  Y  Y  W  P  E  H  E  F  A  Y  L  L  L  T  Q  G  M  I  L  L  K  R  S  R :   L  S  A  K  L  V  I  *  W  A  L  N  T  S  L  S  S  P  T  K  S  S  *  K  Q  T  E  S  S  W  N  E  L  S  F  R  I  D  S  I  K  H  D  T  S  L  G  *  E  V  L  T  L  F  N  F  L  Y  T  K  C  C  H  V  L  H  G  I  V  L  S  F  S  Y  A  S  R  K  G  C  C  K  V  P  S  R  E  Y  F  V  L  S  K  Q  K  *  R  N  D  M  E  K  V  N  L  Q  Y  *  L  T  N  C  W  R  K  L  K  S  S  S  E  K  T  I  A  T  L  *  Q  E  G  Q  E  A  N  L  P  L  C  I  H  C  Q  D  E  K  F  K  N  M  N  V  N  P  K  D  L  *  I  I  *  F  S  L  L  C  F  V  F  V  F  Y  V  I  C  *  H  *  F  L  K  L  V  K  R  L  K  N  G  L  S  A  N  M  K  V  C  N  A  C  I  H  S  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="90179"/>
                    <exon start="90360" stop="90521"/>
                    <exon start="91250" stop="91376"/>
                    <exon start="91491" stop="91657"/>
                    <exon start="91778" stop="91885"/>
                    <exon start="92205" stop="92300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PWKKIIVVVEGIYSMEGELCQLPEIVAICKKYKAYVYLDEAHSIGAVGRTGRGVCELLGVDTADVEIMMGTFTKSFGSCGGYIAGSKELIEYLKYTCPAHLYATSISPPAAQQIISSINVILGEDGSSRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKRKVAVVTVAFPATPLLLARARICISAAHSRDDLIKALEVISEVGDLVGIKYFPVEPNKEQLEANRVKLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="102078" PGL_stop="102664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102078" e_stop="102537"/>
            <exon e_start="102629" e_stop="102664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.964" e_score="0.978"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="102078" e_stop="102537" e_length="460"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.964">
            <gDNA_intron_boundary i_start="102538" i_stop="102628" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="102629" e_stop="102664" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102078" stop="102537"/>
              <exon start="102629" stop="102664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E446543" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAATTTCAAGCATTGCTGCAAAGTATATGGGGAGGCCTATTTCGCAACTTCCACCAGTGCAACCTGTTCATTTGTCTTCACTTAACTTAATGTCCATGCCTAATTTTGGACTAACTGGTCCTTCACTTGATCTTGATCTTCTCCCTGGAAGTTCGACGAGTACTTATCCAAATTTACCATGTCCTACATTCAACATATCAGACATGGATAAGTCCCTTATGGCTGATATTGCTGGTAATGCCATGGAGGAATTGATTAGGCTTTTACAAACTAACGAACCTTTGTGGACAAAGTCCACAACTGATGGCAGAGATGTACTTGACATCGATAAATACGGCCAGATTTTTCCAAAGGCTAACAGTTCGTTGAAAAATCCAAATGTTCGTGTTGAGGCTTCCAGGCAATCAGGTGTTGTGATAATGAATGGTTTGGCCTTAGTCGACATGTTCATGGATGTG : AACAAATGGGTGGAATTCTTTCCTACAATTGTTTCA</gDNA_template>
            <first_frame> Q  N  F  K  H  C  C  K  V  Y  G  E  A  Y  F  A  T  S  T  S  A  T  C  S  F  V  F  T  *  L  N  V  H  A  *  F  W  T  N  W  S  F  T  *  S  *  S  S  P  W  K  F  D  E  Y  L  S  K  F  T  M  S  Y  I  Q  H  I  R  H  G  *  V  P  Y  G  *  Y  C  W  *  C  H  G  G  I  D  *  A  F  T  N  *  R  T  F  V  D  K  V  H  N  *  W  Q  R  C  T  *  H  R  *  I  R  P  D  F  S  K  G  *  Q  F  V  E  K  S  K  C  S  C  *  G  F  Q  A  I  R  C  C  D  N  E  W  F  G  L  S  R  H  V  H  G  C   : E  Q  M  G  G  I  L  S  Y  N  C  F  </first_frame>
            <second_frame>  K  I  S  S  I  A  A  K  Y  M  G  R  P  I  S  Q  L  P  P  V  Q  P  V  H  L  S  S  L  N  L  M  S  M  P  N  F  G  L  T  G  P  S  L  D  L  D  L  L  P  G  S  S  T  S  T  Y  P  N  L  P  C  P  T  F  N  I  S  D  M  D  K  S  L  M  A  D  I  A  G  N  A  M  E  E  L  I  R  L  L  Q  T  N  E  P  L  W  T  K  S  T  T  D  G  R  D  V  L  D  I  D  K  Y  G  Q  I  F  P  K  A  N  S  S  L  K  N  P  N  V  R  V  E  A  S  R  Q  S  G  V  V  I  M  N  G  L  A  L  V  D  M  F  M  D  V  :  N  K  W  V  E  F  F  P  T  I  V  S </second_frame>
            <third_frame>   K  F  Q  A  L  L  Q  S  I  W  G  G  L  F  R  N  F  H  Q  C  N  L  F  I  C  L  H  L  T  *  C  P  C  L  I  L  D  *  L  V  L  H  L  I  L  I  F  S  L  E  V  R  R  V  L  I  Q  I  Y  H  V  L  H  S  T  Y  Q  T  W  I  S  P  L  W  L  I  L  L  V  M  P  W  R  N  *  L  G  F  Y  K  L  T  N  L  C  G  Q  S  P  Q  L  M  A  E  M  Y  L  T  S  I  N  T  A  R  F  F  Q  R  L  T  V  R  *  K  I  Q  M  F  V  L  R  L  P  G  N  Q  V  L  *  *  *  M  V  W  P  *  S  T  C  S  W  M  * :   T  N  G  W  N  S  F  L  Q  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102079" stop="102537"/>
                    <exon start="102629" stop="102664"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KISSIAAKYMGRPISQLPPVQPVHLSSLNLMSMPNFGLTGPSLDLDLLPGSSTSTYPNLPCPTFNISDMDKSLMADIAGNAMEELIRLLQTNEPLWTKSTTDGRDVLDIDKYGQIFPKANSSLKNPNVRVEASRQSGVVIMNGLALVDMFMDVNKWVEFFPTIVS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="113422" PGL_stop="116579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113422" e_stop="113587"/>
            <exon e_start="115205" e_stop="115857"/>
            <exon e_start="115961" e_stop="116169"/>
            <exon e_start="116250" e_stop="116317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.926" e_score="0.997"/>
          <exon-intron don_prob="0.909" acc_prob="1.000" e_score="0.970"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="113422" e_stop="113587" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="115205" e_stop="115857" e_length="653"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.926">
            <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="0.970">
            <gDNA_exon_boundary e_start="115961" e_stop="116169" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="116250" e_stop="116317" e_length="68"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113422" stop="113587"/>
              <exon start="115205" stop="115785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738513" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113428" stop="113587"/>
              <exon start="115205" stop="115857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115433" stop="115857"/>
              <exon start="115961" stop="116169"/>
              <exon start="116250" stop="116317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115620" stop="115857"/>
              <exon start="115961" stop="116169"/>
              <exon start="116250" stop="116316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E568647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115732" stop="115857"/>
              <exon start="115961" stop="116157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTTGTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG : TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT : GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG : GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGT</gDNA_template>
            <first_frame> P  F  V  I  Y  T  L  V  F  S  L  *  E  S  L  S  L  S  N  L  I  *  *  *  L  S  S  L  S  V  S  F  A  F  C  R  L  R  R  W  L  V  G  E  G  R  K  L  V  Y  R  R  *  F  *   : V  A  I  M  V  R  K  R  R  T  D  V  P  G  G  A  E  S  S  E  S  H  E  T  G  G  G  R  G  G  V  Q  R  P  P  P  Q  Q  Q  Q  G  G  G  R  G  S  G  P  Q  R  G  G  Y  G  G  R  G  G  G  G  A  P  R  G  G  I  A  P  Q  Q  S  Y  G  G  P  P  E  Y  Y  Q  Q  G  R  G  T  Q  Q  Y  Q  R  G  G  G  Q  P  Q  R  R  G  G  I  G  G  R  G  A  P  S  G  G  S  S  R  P  P  V  P  E  L  H  Q  A  T  E  T  P  H  Q  P  V  P  Y  G  R  P  A  E  T  Y  S  E  A  G  S  S  S  Q  P  P  E  P  M  T  H  Q  V  T  Q  Q  F  Q  Q  I  A  V  Q  P  E  A  G  A  S  Q  A  I  P  P  V  S  S  K  S  M  R  F  P  L  R  P  G  K  G  S  N  G  T  R  C  I  V  K  A  N  H  F  F  A  E  L  P  D  K  D  L  H  Q  Y  D  :  V  S  I  T  P  E  V  A  S  R  G  V  N  R  A  V  M  E  Q  L  V  K  L  Y  R  E  S  H  L  G  K  R  L  P  A  Y  D  G  R  K  S  L  Y  T  A  G  P  L  P  F  V  Q  K  D  F  K  I  T  L  L  D  D  D  D  G  P  G  G  A  R :   R  E  R  E  F  K  V  V  I  K  L  A  A  R  A  D  L  H  H  L  G  M  </first_frame>
            <second_frame>  L  L  L  S  T  H  *  F  S  L  S  R  N  H  F  L  S  L  I  *  Y  S  S  S  C  L  L  S  P  S  H  L  R  F  V  G  Y  G  G  G  W  L  E  K  G  G  N  W  C  T  G  G  D  F  E  :  L  L  S  W  C  G  R  G  E  L  M  F  L  V  V  L  R  A  L  S  P  T  K  L  E  G  D  E  V  V  S  N  A  H  H  H  N  S  N  K  V  E  E  E  A  R  D  L  S  V  E  D  M  V  A  V  V  V  E  E  L  L  V  V  E  *  P  L  N  S  H  M  V  D  P  P  S  T  I  N  R  A  G  E  L  S  S  I  N  E  G  E  D  N  P  S  A  V  V  V  *  G  A  V  G  H  L  L  V  A  L  L  G  H  Q  F  P  S  C  T  K  Q  L  R  L  H  I  S  P  Y  H  M  E  D  Q  Q  K  H  T  Q  R  L  A  P  H  L  S  H  L  N  Q  *  H  I  K  L  L  S  S  S  S  K  L  L  C  N  Q  K  Q  V  H  P  K  Q  F  H  L  Y  R  A  S  Q  *  G  F  H  F  G  L  E  R  V  V  M  E  L  D  A  L  L  R  P  I  T  S  L  P  S  Y  L  T  K  T  C  T  S  M  M :   F  Q  L  H  Q  R  *  L  P  E  V  S  T  A  L  S  W  S  S  L  *  S  F  T  E  N  P  I  L  G  R  G  F  Q  P  M  M  E  E  K  V  C  T  P  Q  G  P  S  L  L  F  K  K  I  L  K  S  H  F  L  M  M  M  M  D  P  V  V  L   : G  E  K  G  S  L  K  L  *  S  S  W  L  L  V  L  I  F  I  I  *  G  C </second_frame>
            <third_frame>   F  C  Y  L  H  I  S  F  L  S  L  G  I  T  F  S  L  *  S  D  I  V  V  V  V  F  S  L  R  L  I  C  V  L  *  V  T  A  V  V  G  W  R  R  A  E  I  G  V  P  A  V  I  L  S :   C  Y  H  G  A  E  E  E  N  *  C  S  W  W  C  *  E  L  *  V  P  R  N  W  R  G  T  R  W  C  P  T  P  T  T  T  T  A  T  R  W  R  K  R  L  G  T  S  A  W  R  I  W  W  P  W  W  W  R  S  S  S  W  W  N  S  P  S  T  V  I  W  W  T  P  R  V  L  S  T  G  Q  G  N  S  A  V  S  T  R  G  R  T  T  P  A  P  W  W  Y  R  G  P  W  G  T  F  W  W  L  F  *  A  T  S  S  R  A  A  P  S  N  *  D  S  T  S  A  R  T  I  W  K  T  S  R  N  I  L  R  G  W  L  L  I  S  A  T  *  T  N  D  T  S  S  Y  S  A  V  P  A  N  C  C  A  T  R  S  R  C  I  P  S  N  S  T  C  I  E  Q  V  N  E  V  S  T  S  A  W  K  G  *  *  W  N  *  M  H  C  *  G  Q  S  L  L  C  R  V  T  *  Q  R  L  A  P  V  *   : C  F  N  Y  T  R  G  S  F  P  R  C  Q  P  R  C  H  G  A  A  C  K  A  L  Q  R  I  P  S  W  E  E  A  S  S  L  *  W  K  K  K  F  V  H  R  R  A  P  P  F  C  S  K  R  F  *  N  H  T  S  *  *  *  *  W  T  R  W  C  *  :  A  R  K  G  V  *  S  C  D  Q  A  G  C  S  C  *  S  S  S  F  R  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113587" stop="115857"/>
                    <exon start="115961" stop="116169"/>
                    <exon start="116250" stop="116316"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>930</number_coding_nucleotides>
                  <number_encoded_amino_acids>310</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAIMVRKRRTDVPGGAESSESHETGGGRGGVQRPPPQQQQGGGRGSGPQRGGYGGRGGGGAPRGGIAPQQSYGGPPEYYQQGRGTQQYQRGGGQPQRRGGIGGRGAPSGGSSRPPVPELHQATETPHQPVPYGRPAETYSEAGSSSQPPEPMTHQVTQQFQQIAVQPEAGASQAIPPVSSKSMRFPLRPGKGSNGTRCIVKANHFFAELPDKDLHQYDVSITPEVASRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVQKDFKITLLDDDDGPGGARREREFKVVIKLAARADLHHLGM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115251" e_stop="115461"/>
            <exon e_start="115678" e_stop="115857"/>
            <exon e_start="115961" e_stop="116169"/>
            <exon e_start="116250" e_stop="116399"/>
            <exon e_start="116508" e_stop="116579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115251" e_stop="115461" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115462" i_stop="115677" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115678" e_stop="115857" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.926">
            <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115961" e_stop="116169" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116250" e_stop="116399" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116400" i_stop="116507" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116508" e_stop="116579" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115251" stop="115461"/>
              <exon start="115678" stop="115857"/>
              <exon start="115961" stop="116169"/>
              <exon start="116250" stop="116399"/>
              <exon start="116508" stop="116579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735879" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115253" stop="115461"/>
              <exon start="115678" stop="115857"/>
              <exon start="115961" stop="116169"/>
              <exon start="116250" stop="116399"/>
              <exon start="116508" stop="116579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115732" stop="115857"/>
              <exon start="115961" stop="116157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAG : CAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT : GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG : GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAG : GTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</gDNA_template>
            <first_frame> *  E  L  *  V  P  R  N  W  R  G  T  R  W  C  P  T  P  T  T  T  T  A  T  R  W  R  K  R  L  G  T  S  A  W  R  I  W  W  P  W  W  W  R  S  S  S  W  W  N  S  P  S  T  V  I  W  W  T  P  R  V  L  S  T  G  Q  G  N  S   : A  V  P  A  N  C  C  A  T  R  S  R  C  I  P  S  N  S  T  C  I  E  Q  V  N  E  V  S  T  S  A  W  K  G  *  *  W  N  *  M  H  C  *  G  Q  S  L  L  C  R  V  T  *  Q  R  L  A  P  V  *   : C  F  N  Y  T  R  G  S  F  P  R  C  Q  P  R  C  H  G  A  A  C  K  A  L  Q  R  I  P  S  W  E  E  A  S  S  L  *  W  K  K  K  F  V  H  R  R  A  P  P  F  C  S  K  R  F  *  N  H  T  S  *  *  *  *  W  T  R  W  C  *  :  A  R  K  G  V  *  S  C  D  Q  A  G  C  S  C  *  S  S  S  F  R  D  V  L  T  R  E  A  G  G  C  T  P  G  G  P  T  G  S  *  Y  C  S  A  *  V  A  N  K  *  :  V  L  S  R  G  P  I  I  L  F  P  *  F  R  T  K  T  T  T  R  *  R  F  G </first_frame>
            <second_frame>  E  S  S  E  S  H  E  T  G  G  G  R  G  G  V  Q  R  P  P  P  Q  Q  Q  Q  G  G  G  R  G  S  G  P  Q  R  G  G  Y  G  G  R  G  G  G  G  A  P  R  G  G  I  A  P  Q  Q  S  Y  G  G  P  P  E  Y  Y  Q  Q  G  R  G  T  Q  :  Q  F  Q  Q  I  A  V  Q  P  E  A  G  A  S  Q  A  I  P  P  V  S  S  K  S  M  R  F  P  L  R  P  G  K  G  S  N  G  T  R  C  I  V  K  A  N  H  F  F  A  E  L  P  D  K  D  L  H  Q  Y  D  :  V  S  I  T  P  E  V  A  S  R  G  V  N  R  A  V  M  E  Q  L  V  K  L  Y  R  E  S  H  L  G  K  R  L  P  A  Y  D  G  R  K  S  L  Y  T  A  G  P  L  P  F  V  Q  K  D  F  K  I  T  L  L  D  D  D  D  G  P  G  G  A  R :   R  E  R  E  F  K  V  V  I  K  L  A  A  R  A  D  L  H  H  L  G  M  F  L  Q  G  R  Q  A  D  A  P  Q  E  A  L  Q  V  L  D  I  V  L  R  E  L  P  T  S  R :   Y  C  P  V  G  R  S  F  Y  S  P  D  L  G  R  R  Q  P  L  G  E  G  L   </second_frame>
            <third_frame>   R  A  L  S  P  T  K  L  E  G  D  E  V  V  S  N  A  H  H  H  N  S  N  K  V  E  E  E  A  R  D  L  S  V  E  D  M  V  A  V  V  V  E  E  L  L  V  V  E  *  P  L  N  S  H  M  V  D  P  P  S  T  I  N  R  A  G  E  L  S :   S  S  S  K  L  L  C  N  Q  K  Q  V  H  P  K  Q  F  H  L  Y  R  A  S  Q  *  G  F  H  F  G  L  E  R  V  V  M  E  L  D  A  L  L  R  P  I  T  S  L  P  S  Y  L  T  K  T  C  T  S  M  M :   F  Q  L  H  Q  R  *  L  P  E  V  S  T  A  L  S  W  S  S  L  *  S  F  T  E  N  P  I  L  G  R  G  F  Q  P  M  M  E  E  K  V  C  T  P  Q  G  P  S  L  L  F  K  K  I  L  K  S  H  F  L  M  M  M  M  D  P  V  V  L   : G  E  K  G  S  L  K  L  *  S  S  W  L  L  V  L  I  F  I  I  *  G  C  S  Y  K  G  G  R  R  M  H  P  R  R  P  Y  R  F  L  I  L  F  C  V  S  C  Q  Q  V   : G  I  V  P  W  A  D  H  S  I  P  L  I  *  D  E  D  N  H  *  V  K  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115252" stop="115461"/>
                    <exon start="115678" stop="115857"/>
                    <exon start="115961" stop="116169"/>
                    <exon start="116250" stop="116399"/>
                    <exon start="116508" stop="116577"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESSESHETGGGRGGVQRPPPQQQQGGGRGSGPQRGGYGGRGGGGAPRGGIAPQQSYGGPPEYYQQGRGTQQFQQIAVQPEAGASQAIPPVSSKSMRFPLRPGKGSNGTRCIVKANHFFAELPDKDLHQYDVSITPEVASRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVQKDFKITLLDDDDGPGGARREREFKVVIKLAARADLHHLGMFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="116615" PGL_stop="124349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116615" e_stop="116641"/>
            <exon e_start="116788" e_stop="116897"/>
            <exon e_start="117172" e_stop="117278"/>
            <exon e_start="117508" e_stop="117646"/>
            <exon e_start="117729" e_stop="117845"/>
            <exon e_start="118570" e_stop="118677"/>
            <exon e_start="118835" e_stop="118906"/>
            <exon e_start="119665" e_stop="119787"/>
            <exon e_start="119883" e_stop="120048"/>
            <exon e_start="120139" e_stop="120398"/>
            <exon e_start="120496" e_stop="120638"/>
            <exon e_start="120750" e_stop="120812"/>
            <exon e_start="120899" e_stop="120962"/>
            <exon e_start="121107" e_stop="121242"/>
            <exon e_start="121325" e_stop="121398"/>
            <exon e_start="121481" e_stop="121575"/>
            <exon e_start="121646" e_stop="121677"/>
            <exon e_start="121834" e_stop="122238"/>
            <exon e_start="124336" e_stop="124349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.453" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.807" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="0.988"/>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="0.996"/>
          <exon-intron don_prob="0.972" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.501" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="0.987"/>
          <exon-intron don_prob="0.814" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.830" e_score="0.995"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116615" e_stop="116641" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.975">
            <gDNA_intron_boundary i_start="116642" i_stop="116787" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116788" e_stop="116897" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.453" acc_prob="0.980">
            <gDNA_intron_boundary i_start="116898" i_stop="117171" i_length="274"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117172" e_stop="117278" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.969">
            <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117646" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.993">
            <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117729" e_stop="117845" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.807" acc_prob="0.968">
            <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118570" e_stop="118677" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118835" e_stop="118906" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.583" acc_prob="0.799">
            <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119665" e_stop="119787" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="119883" e_stop="120048" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="0.996">
            <gDNA_exon_boundary e_start="120139" e_stop="120398" e_length="260"/>
          </exon>
          <intron i_serial="10" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="120496" e_stop="120638" e_length="143"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.987">
            <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="120750" e_stop="120812" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.501">
            <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="120899" e_stop="120962" e_length="64"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.751">
            <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="121107" e_stop="121242" e_length="136"/>
          </exon>
          <intron i_serial="14" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="121243" i_stop="121324" i_length="82"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="121325" e_stop="121398" e_length="74"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121399" i_stop="121480" i_length="82"/>
          </intron>
          <exon e_serial="16" e_score="0.987">
            <gDNA_exon_boundary e_start="121481" e_stop="121575" e_length="95"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="121646" e_stop="121677" e_length="32"/>
          </exon>
          <intron i_serial="17" don_prob="0.814" acc_prob="0.868">
            <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156"/>
          </intron>
          <exon e_serial="18" e_score="0.995">
            <gDNA_exon_boundary e_start="121834" e_stop="122238" e_length="405"/>
          </exon>
          <intron i_serial="18" don_prob="0.000" acc_prob="0.830">
            <gDNA_intron_boundary i_start="122239" i_stop="124335" i_length="2097"/>
          </intron>
          <exon e_serial="19" e_score="0.643">
            <gDNA_exon_boundary e_start="124336" e_stop="124349" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116615" stop="116641"/>
              <exon start="116788" stop="116897"/>
              <exon start="117172" stop="117278"/>
              <exon start="117508" stop="117646"/>
              <exon start="117729" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117195" stop="117278"/>
              <exon start="117508" stop="117646"/>
              <exon start="117729" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295380" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117228" stop="117278"/>
              <exon start="117508" stop="117646"/>
              <exon start="117729" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118906"/>
              <exon start="119665" stop="119787"/>
              <exon start="119883" stop="119892"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E420552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117587" stop="117646"/>
              <exon start="117729" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118906"/>
              <exon start="119665" stop="119787"/>
              <exon start="119883" stop="120014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117788" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118906"/>
              <exon start="119665" stop="119787"/>
              <exon start="119883" stop="119975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119686" stop="119787"/>
              <exon start="119883" stop="120048"/>
              <exon start="120139" stop="120396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729147" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119908" stop="120048"/>
              <exon start="120139" stop="120387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E436890" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120002" stop="120048"/>
              <exon start="120139" stop="120398"/>
              <exon start="120496" stop="120638"/>
              <exon start="120750" stop="120785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120222" stop="120398"/>
              <exon start="120496" stop="120638"/>
              <exon start="120750" stop="120812"/>
              <exon start="120899" stop="120962"/>
              <exon start="121107" stop="121242"/>
              <exon start="121325" stop="121398"/>
              <exon start="121481" stop="121555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120318" stop="120398"/>
              <exon start="120496" stop="120638"/>
              <exon start="120750" stop="120812"/>
              <exon start="120899" stop="120962"/>
              <exon start="121107" stop="121214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120328" stop="120398"/>
              <exon start="120496" stop="120638"/>
              <exon start="120750" stop="120812"/>
              <exon start="120899" stop="120962"/>
              <exon start="121107" stop="121242"/>
              <exon start="121325" stop="121398"/>
              <exon start="121481" stop="121575"/>
              <exon start="121646" stop="121677"/>
              <exon start="121834" stop="121861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121574" stop="121575"/>
              <exon start="121646" stop="121677"/>
              <exon start="121834" stop="122238"/>
              <exon start="124336" stop="124349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238633" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121671" stop="121677"/>
              <exon start="121834" stop="122238"/>
              <exon start="124336" stop="124349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121958" stop="122238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121966" stop="122238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121966" stop="122238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736050" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121966" stop="122238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740926" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAGATGGGATTATCCCTGAATATTG : ATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAG : ATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGAC : TTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG : GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG : ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG : CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG : AAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATG : ATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATG : GTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG : GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA : GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG : AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG : GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTG : GTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAG : GGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACAC : ATATGCTAGGTGTACTCGTTCTGTCTCCATTG : TTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA : ACAGAAACAGCAAA</gDNA_template>
            <first_frame> R  R  W  D  Y  P  *  I  L  :  I  C  L  P  Q  H  S  L  S  H  C  R  S  L  N  L  *  A  S  F  *  I  G  I  S  L  L  D  H  C  L  M  L  I  G  L  R :   *  R  R  P  *  E  V  *  R  W  R  S  L  I  V  G  I  *  G  G  S  T  A  Y  L  V  *  H  L  K  Q  Q  E  S  *   : L  S  L  *  M  K  E  V  P  *  K  L  L  W  N  T  F  E  K  R  M  V  L  L  F  S  I  L  S  C  L  V  F  K  L  E  I  H  K  G  Q  I  I  C  L  W  R :   S  A  R  L  W  R  G  R  G  T  P  N  A  *  M  R  G  R  *  Q  H  F  *  K  *  P  A  S  V  L  K  R  E  R  M  I  F  F  R :   L  F  V  T  M  L  I  Q  M  T  H  M  R  G  N  L  V  L  R  L  A  R  S  L  L  K  L  R  L  A  F  C  L  H  L  G :   L  N  T  M  I  Q  V  E  K  K  T  V  Y  H  K  W  A  N  G  I  *  *  I  R :   K  W  *  M  E  E  Q  *  T  T  G  S  V  *  I  F  L  A  M  C  K  T  V  L  P  G  D  F  V  L  S  L  H  R  C  A  *  Y  R  A  * :   S  S  T  R  I  L  F  Y  H  Q  *  V  L  A  L  I  K  L  R  G  S  *  K  L  D  F  M  M  L  *  R  S  C  S  R  M  G  G  S  S  I  C  *  S  S  Y  C  P  T  I  M  A  P  F  M  :  V  I  *  N  E  F  V  K  L  I  L  A  L  S  R  N  A  A  *  Q  N  M  C  L  R  *  A  S  S  I  *  P  M  C  P  L  R  L  M  *  R  L  E  V  E  T  P  C  L  L  M  R  S  L  G  E  F  P  L  S  A  T  A  Q  L  L  F  L  V  Q  M  S  P  I  P  T  L  G  R  I  L  A  R  P  L  L  R :   W  L  L  L  K  I  G  L  R  L  P  S  M  L  V  W  F  L  L  K  L  I  G  K  S  L  Y  K  I  C  T  R  L  G  K  I  Q  L  E  E  L  *  L  V  A  *  *   : R  N  C  *  F  P  S  V  E  R  L  D  R  S  L  R  E  *  Y  S  T   : E  M  E  L  V  R  D  S  F  I  K  C  F  F  L  N  L  M  Q  S  A  R :   L  V  H  L  *  N  P  T  I  S  P  Q  L  R  L  W  W  C  K  S  V  T  T  Q  G  C  L  P  T  T  T  V  I  E  M  L  S  I  G  V  G  T  F  C  L  :  V  L  W  L  I  Q  R  S  V  T  L  L  S  L  I  S  I  S  V  A  M  L  A  Y  R :   V  L  A  G  Q  H  I  I  M  S  C  G  T  R  T  I  F  L  L  M  G  C  S  L  *  L  T  T  F  A  T   : H  M  L  G  V  L  V  L  S  P  L  :  F  L  Q  H  I  M  H  I  W  Q  L  S  V  L  V  F  T  W  N  Q  R  H  L  T  V  D  L  S  Q  A  E  L  L  R  T  E  V  V  *  E  L  L  E  G  A  Q  G  R  Q  V  L  V  L  L  *  G  P  F  L  L  S  R  R  M  S  K  G  *  C  S  I  V  R  S  P  L  *  P  G  Y  M  I  W  T  C  W  S  N  F  F  S  N  C  M  *  L  S  H  L  D  V  Y  E  S  S  V  V  S  *  T  V  V  Y  S  Q  V  M  F  V  N  C  G  L  N  N  C  Y  *  R  A  W  L  V  I  *  :  T  E  T  A   </first_frame>
            <second_frame>  A  D  G  I  I  P  E  Y  * :   Y  V  F  H  S  I  H  *  A  T  A  G  H  *  I  C  E  P  A  S  E  S  G  Y  L  F  *  T  I  V  *  C  *  S  G  *   : D  K  E  G  P  E  R  C  K  G  G  G  H  S  S  W  E  Y  E  E  E  V  P  H  I  W  F  D  I  S  S  N  K  R  V  D  :  F  P  C  R  *  K  R  Y  H  E  S  C  C  G  I  L  S  R  N  V  W  F  C  Y  S  A  Y  S  V  A  L  S  S  S  W  K  Y  T  K  A  K  L  F  A  Y  G   : G  L  Q  D  C  G  G  A  E  V  L  Q  T  L  E  *  E  A  D  N  S  T  S  E  S  D  L  P  A  S  S  R  E  R  E  *  Y  S  S   : D  C  S  S  Q  C  L  F  R  *  P  I  C  E  G  I  W  Y  *  D  *  R  E  A  C  S  S  *  G  S  H  F  A  C  T  L   : A  *  I  P  *  Y  R  S  R  K  R  L  S  T  T  S  G  P  M  E  Y  D  E  *   : E  N  G  K  W  R  N  S  E  Q  L  D  L  Y  K  F  F  S  Q  C  A  R  Q  C  C  P  G  I  L  F  *  A  C  T  D  V  H  D  I  G  H   : D  L  Q  P  E  S  C  F  T  T  S  E  C  S  P  *  S  S  *  E  G  P  E  N  *  I  S  *  C  Y  D  E  V  A  A  E  W  E  G  A  R  S  V  D  R  H  I  A  R  Q  *  W  L  P  L  W :   *  S  K  T  N  L  *  N  *  S  W  H  C  L  A  M  L  L  D  K  T  C  V  *  D  E  Q  A  V  F  S  Q  C  V  P  *  D  *  C  E  G  W  R  *  K  H  R  A  C  *  C  D  L  *  A  N  S  P  C  Q  R  P  P  N  Y  Y  F  W  C  R  C  H  P  S  P  P  W  G  G  F  *  P  V  H  C  C   : G  G  C  F  S  R  L  A  *  D  Y  Q  V  C  W  S  G  F  C  S  S  S  *  A  R  A  Y  T  R  S  V  Q  D  L  A  R  S  N  *  R  N  C  D  W  W  H  D  K  :  G  I  A  D  F  L  P  S  S  D  W  T  E  A  S  E  N  N  I  L  P  :  R  W  S  *  *  G  T  V  L  S  S  A  S  F  *  T  *  C  N  P  Q   : G  L  C  I  F  R  T  Q  L  S  A  P  S  Y  V  C  G  G  A  K  A  S  P  H  K  V  V  C  Q  Q  P  P  *  S  K  C  C  R  S  E  W  E  H  F  A  W :   Y  C  G  *  F  K  D  L  S  P  Y  *  V  *  F  L  S  L  *  P  C  W  H  T   : G  Y  *  P  A  S  T  L  S  C  L  V  G  R  E  Q  F  F  C  *  W  A  A  V  F  D  *  Q  P  L  L  H  :  I  C  *  V  Y  S  F  C  L  H  C :   S  S  S  I  L  C  T  F  G  S  F  P  C  S  F  L  H  G  T  R  D  I  *  R  W  I  C  H  K  R  S  C  S  V  Q  R  W  C  R  S  C  W  K  E  H  K  G  A  R  C  W  C  C  C  K  A  P  S  C  S  Q  G  E  C  Q  K  G  D  V  L  L  L  E  V  L  S  N  Q  A  I  *  Y  G  H  A  G  V  I  S  F  Q  I  V  C  D  Y  L  T  L  M  F  M  K  V  Q  L  S  V  K  Q  *  F  I  R  K  *  C  L  *  I  V  A  *  T  I  V  I  E  E  H  G  *  L  F  K :   Q  K  Q  Q  </second_frame>
            <third_frame>   Q  M  G  L  S  L  N  I   : D  M  S  S  T  A  F  I  E  P  L  P  V  I  E  F  V  S  Q  L  L  N  R  D  I  S  S  R  P  L  S  D  A  D  R  V  K  :  I  K  K  A  L  R  G  V  K  V  E  V  T  H  R  G  N  M  R  R  K  Y  R  I  S  G  L  T  S  Q  A  T  R  E  L  T :   F  P  V  D  E  R  G  T  M  K  A  V  V  E  Y  F  R  E  T  Y  G  F  V  I  Q  H  T  Q  L  P  C  L  Q  V  G  N  T  Q  R  P  N  Y  L  P  M  E  :  V  C  K  I  V  E  G  Q  R  Y  S  K  R  L  N  E  R  Q  I  T  A  L  L  K  V  T  C  Q  R  P  Q  E  R  E  N  D  I  L  Q  :  T  V  R  H  N  A  Y  S  D  D  P  Y  A  R  E  F  G  I  K  I  S  E  K  L  A  Q  V  E  A  R  I  L  P  A  P  W  :  L  K  Y  H  D  T  G  R  E  K  D  C  L  P  Q  V  G  Q  W  N  M  M  N  K  :  K  M  V  N  G  G  T  V  N  N  W  I  C  I  N  F  S  R  N  V  Q  D  S  V  A  R  G  F  C  S  E  L  A  Q  M  C  M  I  S  G  M  :  I  F  N  P  N  P  V  L  P  P  V  S  A  R  P  D  Q  V  E  R  V  L  K  T  R  F  H  D  A  M  T  K  L  Q  P  N  G  R  E  L  D  L  L  I  V  I  L  P  D  N  N  G  S  L  Y   : G  D  L  K  R  I  C  E  T  D  L  G  I  V  S  Q  C  C  L  T  K  H  V  F  K  M  S  K  Q  Y  L  A  N  V  S  L  K  I  N  V  K  V  G  G  R  N  T  V  L  V  D  A  I  S  R  R  I  P  L  V  S  D  R  P  T  I  I  F  G  A  D  V  T  H  P  H  P  G  E  D  S  S  P  S  I  A  A  :  V  V  A  S  Q  D  W  P  E  I  T  K  Y  A  G  L  V  S  A  Q  A  H  R  Q  E  L  I  Q  D  L  Y  K  T  W  Q  D  P  T  R  G  T  V  T  G  G  M  I  K :   E  L  L  I  S  F  R  R  A  T  G  Q  K  P  Q  R  I  I  F  Y  R :   D  G  V  S  E  G  Q  F  Y  Q  V  L  L  F  E  L  D  A  I  R  K  :  A  C  A  S  L  E  P  N  Y  Q  P  P  V  T  F  V  V  V  Q  K  R  H  H  T  R  L  F  A  N  N  H  R  D  R  N  A  V  D  R  S  G  N  I  L  P   : G  T  V  V  D  S  K  I  C  H  P  T  E  F  D  F  Y  L  C  S  H  A  G  I  Q  :  G  T  S  R  P  A  H  Y  H  V  L  W  D  E  N  N  F  S  A  D  G  L  Q  S  L  T  N  N  L  C  Y  T :   Y  A  R  C  T  R  S  V  S  I   : V  P  P  A  Y  Y  A  H  L  A  A  F  R  A  R  F  Y  M  E  P  E  T  S  D  G  G  S  V  T  S  G  A  A  P  Y  R  G  G  V  G  A  V  G  R  S  T  R  A  P  G  V  G  A  A  V  R  P  L  P  A  L  K  E  N  V  K  R  V  M  F  Y  C  *  K  S  S  L  T  R  L  Y  D  M  D  M  L  E  *  F  L  F  K  L  Y  V  I  I  S  P  *  C  L  *  K  F  S  C  Q  L  N  S  S  L  F  A  S  D  V  C  K  L  W  L  E  Q  L  L  L  K  S  M  A  S  Y  L   : N  R  N  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116617" stop="116641"/>
                    <exon start="116788" stop="116897"/>
                    <exon start="117172" stop="117278"/>
                    <exon start="117508" stop="117646"/>
                    <exon start="117729" stop="117845"/>
                    <exon start="118570" stop="118677"/>
                    <exon start="118835" stop="118906"/>
                    <exon start="119665" stop="119787"/>
                    <exon start="119883" stop="120048"/>
                    <exon start="120139" stop="120398"/>
                    <exon start="120496" stop="120638"/>
                    <exon start="120750" stop="120812"/>
                    <exon start="120899" stop="120962"/>
                    <exon start="121107" stop="121242"/>
                    <exon start="121325" stop="121398"/>
                    <exon start="121481" stop="121575"/>
                    <exon start="121646" stop="121677"/>
                    <exon start="121834" stop="122051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2049</number_coding_nucleotides>
                  <number_encoded_amino_acids>683</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMGLSLNIDMSSTAFIEPLPVIEFVSQLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKAVVEYFRETYGFVIQHTQLPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQERENDILQTVRHNAYSDDPYAREFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCSELAQMCMISGMIFNPNPVLPPVSARPDQVERVLKTRFHDAMTKLQPNGRELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVSAQAHRQELIQDLYKTWQDPTRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHRDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDGGSVTSGAAPYRGGVGAVGRSTRAPGVGAAVRPLPALKENVKRVMFYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="129125" PGL_stop="125698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129125" e_stop="128897"/>
            <exon e_start="128798" e_stop="128772"/>
            <exon e_start="128649" e_stop="128587"/>
            <exon e_start="127395" e_stop="127317"/>
            <exon e_start="127201" e_stop="127156"/>
            <exon e_start="127001" e_stop="126717"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129125" e_stop="128897" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128798" e_stop="128772" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128649" e_stop="128587" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="127395" e_stop="127317" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127201" e_stop="127156" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.996">
            <gDNA_exon_boundary e_start="127001" e_stop="126717" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129125" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126717"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128980" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350455" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128980" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128968" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT : AATCTGATCTTCAGATTTCTTCAGAGT : AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT : GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG : GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC : GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTGTTACTA</gDNA_template>
            <first_frame> K  V  L  L  T  Q  I  V  S  K  F  K  L  N  D  N  T  S  P  N  P  N  S  S  P  G  N  V  M  R  H  F  D  S  Q  I  A  R  L  E  T  F  E  S  N  *  G  F  A  C  R  R  V  T  R  R  R  N  S  I  S  S  H  G  *  H  Q  S  T  E  D  Y  D  P  A  H   : *  S  D  L  Q  I  S  S  E   : *  S  S  H  S  D  M  A  I  *  A  E  G  S  E  D  *  R  T  Y  Y   : W  F  *  *  V  H  E  F  G  S  R  *  C  R  G  S  Q  C  E  E  E  *  Q  K  A  V  R :   A  D  S  S  E  R  R  *  Y  H  I  D  D  E  H  :  G  E  M  I  S  C  *  L  D  L  E  K  K  F  N  F  L  A  K  I  N  Y  W  N  V  V  F  V  D  K  K  L  D  V  R  C  T  *  L  S  L  N  F  H  L  C  F  D  I  C  I  F  S  M  V  C  S  D  L  F  I  Q  *  R  R  V  A  L  *  P  F  L  S  M  L  V  V  T  I  I  S  Q  V  K  N  C  V  N  S  R  N  Q  V  L  L </first_frame>
            <second_frame>  R  F  Y  L  R  K  *  S  Q  N  L  N  L  T  T  T  R  A  Q  T  R  I  H  L  R  V  M  *  C  D  I  S  I  L  K  *  Q  G  L  R  L  L  S  Q  T  R  V  L  L  A  E  E  *  L  V  G  E  T  A  S  A  A  M  A  S  T  K  V  Q  R  I  M  T  Q  P  I  :  N  L  I  F  R  F  L  Q  S  :  K  A  R  I  Q  I  W  L  F  E  Q  K  D  Q  R  I  E  G  R  I  I  :  G  F  D  E  Y  M  N  L  V  L  D  D  A  E  E  V  N  V  K  K  N  S  R  K  Q  L   : G  R  I  L  L  K  G  D  N  I  T  L  M  M  N  T :   G  K  *  F  P  V  S  W  I  L  R  R  S  S  I  F  W  Q  K  S  T  I  G  M  S  S  L  W  T  R  S  W  M  L  D  A  H  D  *  V  *  T  S  I  Y  V  L  I  Y  V  Y  S  A  W  Y  A  Q  I  S  L  Y  S  E  E  E  *  P  Y  D  H  F  S  L  C  W  *  *  Q  L  Y  R  R  *  R  I  V  L  T  R  E  I  K  C  Y   </second_frame>
            <third_frame>   G  S  T  Y  A  N  S  L  K  I  *  T  *  R  Q  H  E  P  K  P  E  F  I  S  G  *  C  N  A  T  F  R  F  S  N  S  K  A  *  D  F  *  V  K  L  G  F  C  L  Q  K  S  N  S  S  E  K  Q  H  Q  Q  P  W  L  A  P  K  Y  R  G  L  *  P  S  P  L :   I  *  S  S  D  F  F  R  V :   K  L  A  F  R  Y  G  Y  L  S  R  R  I  R  G  L  K  D  V  L  L :   V  L  M  S  T  *  I  W  F  *  M  M  P  R  K  S  M  *  R  R  I  A  E  S  S  *  :  G  G  F  F  *  K  E  I  I  S  H  *  *  *  T   : R  G  N  D  F  L  L  A  G  S  *  E  E  V  Q  F  S  G  K  N  Q  L  L  E  C  R  L  C  G  Q  E  A  G  C  *  M  H  M  I  E  F  E  L  P  F  M  F  *  Y  M  Y  I  Q  H  G  M  L  R  S  L  Y  T  V  K  K  S  S  L  M  T  I  S  L  Y  V  G  S  N  N  Y  I  A  G  K  E  L  C  *  L  E  K  S  S  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128965" stop="128897"/>
                    <exon start="128798" stop="128772"/>
                    <exon start="128649" stop="128587"/>
                    <exon start="127395" stop="127317"/>
                    <exon start="127201" stop="127156"/>
                    <exon start="127001" stop="126992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGETASAAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDQRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKQLGRILLKGDNITLMMNTGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="128989" e_stop="128897"/>
            <exon e_start="128798" e_stop="128772"/>
            <exon e_start="128649" e_stop="128587"/>
            <exon e_start="127395" e_stop="127317"/>
            <exon e_start="127201" e_stop="127156"/>
            <exon e_start="127001" e_stop="126726"/>
            <exon e_start="125712" e_stop="125698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.826"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="128989" e_stop="128897" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128798" e_stop="128772" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128649" e_stop="128587" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="127395" e_stop="127317" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127201" e_stop="127156" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.826">
            <gDNA_exon_boundary e_start="127001" e_stop="126726" e_length="276"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126725" i_stop="125713" i_length="1013"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="125712" e_stop="125698" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128989" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126726"/>
              <exon start="125712" stop="125698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128980" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127369"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356354" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="128968" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT : AATCTGATCTTCAGATTTCTTCAGAGT : AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT : GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG : GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC : GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAA : AAAAAAAAAAAAAAA</gDNA_template>
            <first_frame> R  V  L  L  A  E  E  *  L  V  G  E  T  A  S  A  A  M  A  S  T  K  V  Q  R  I  M  T  Q  P  I  :  N  L  I  F  R  F  L  Q  S  :  K  A  R  I  Q  I  W  L  F  E  Q  K  D  Q  R  I  E  G  R  I  I  :  G  F  D  E  Y  M  N  L  V  L  D  D  A  E  E  V  N  V  K  K  N  S  R  K  Q  L   : G  R  I  L  L  K  G  D  N  I  T  L  M  M  N  T :   G  K  *  F  P  V  S  W  I  L  R  R  S  S  I  F  W  Q  K  S  T  I  G  M  S  S  L  W  T  R  S  W  M  L  D  A  H  D  *  V  *  T  S  I  Y  V  L  I  Y  V  Y  S  A  W  Y  A  Q  I  S  L  Y  S  E  E  E  *  P  Y  D  H  F  S  L  C  W  *  *  Q  L  Y  R  R  *  R  I  V  L  T  R  E  I  K :   K  K  K  K   </first_frame>
            <second_frame>  G  F  C  L  Q  K  S  N  S  S  E  K  Q  H  Q  Q  P  W  L  A  P  K  Y  R  G  L  *  P  S  P  L :   I  *  S  S  D  F  F  R  V :   K  L  A  F  R  Y  G  Y  L  S  R  R  I  R  G  L  K  D  V  L  L :   V  L  M  S  T  *  I  W  F  *  M  M  P  R  K  S  M  *  R  R  I  A  E  S  S  *  :  G  G  F  F  *  K  E  I  I  S  H  *  *  *  T   : R  G  N  D  F  L  L  A  G  S  *  E  E  V  Q  F  S  G  K  N  Q  L  L  E  C  R  L  C  G  Q  E  A  G  C  *  M  H  M  I  E  F  E  L  P  F  M  F  *  Y  M  Y  I  Q  H  G  M  L  R  S  L  Y  T  V  K  K  S  S  L  M  T  I  S  L  Y  V  G  S  N  N  Y  I  A  G  K  E  L  C  *  L  E  K  S   : K  K  K  K  K  </second_frame>
            <third_frame>   G  F  A  C  R  R  V  T  R  R  R  N  S  I  S  S  H  G  *  H  Q  S  T  E  D  Y  D  P  A  H   : *  S  D  L  Q  I  S  S  E   : *  S  S  H  S  D  M  A  I  *  A  E  G  S  E  D  *  R  T  Y  Y   : W  F  *  *  V  H  E  F  G  S  R  *  C  R  G  S  Q  C  E  E  E  *  Q  K  A  V  R :   A  D  S  S  E  R  R  *  Y  H  I  D  D  E  H  :  G  E  M  I  S  C  *  L  D  L  E  K  K  F  N  F  L  A  K  I  N  Y  W  N  V  V  F  V  D  K  K  L  D  V  R  C  T  *  L  S  L  N  F  H  L  C  F  D  I  C  I  F  S  M  V  C  S  D  L  F  I  Q  *  R  R  V  A  L  *  P  F  L  S  M  L  V  V  T  I  I  S  Q  V  K  N  C  V  N  S  R  N  Q  :  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128965" stop="128897"/>
                    <exon start="128798" stop="128772"/>
                    <exon start="128649" stop="128587"/>
                    <exon start="127395" stop="127317"/>
                    <exon start="127201" stop="127156"/>
                    <exon start="127001" stop="126992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGETASAAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDQRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKQLGRILLKGDNITLMMNTGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="132376" PGL_stop="133142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132376" e_stop="133142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132376" e_stop="133142" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132376" stop="133142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132377" stop="132896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299734" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</gDNA_template>
            <first_frame> A  K  *  S  F  F  C  G  L  S  R  R  L  E  E  N  F  A  F  *  T  *  G  E  R  F  H  S  R  Y  R  T  *  K  W  N  F  K  *  Q  E  D  C  V  E  W  R  G  *  S  L  *  G  S  F  S  W  R  V  *  *  Y  S  K  F  R  *  I  H  H  R  Y  G  *  *  G  C  Y  M  *  A  Y  *  S  T  L  L  T  C  *  L  Y  T  *  *  T  *  D  I  S  S  G  D  *  *  R  G  *  S  S  E  C  Q  R  *  R  R  V  Q  E  V  S  C  S  C  F  T  W  W  R  W  K  F  W  K  Y  T  R  *  *  K  C  *  *  *  R  *  R  Q  *  C  R  F  *  A  *  N  *  G  G  I  G  E  *  P  *  *  T  S  E  G  *  Y  *  R  V  R  G  C  W  S  K  T  *  D  *  A  N  Q  A  P  K  I  F  S  *  E  Q  E  *  D  F  R  I  V  R  *  A  T  T  P  F  V  T  I  S  S  Q  F  S  L  F  R  T  W  C  K  R  H  D  A  S  I  Q  S  A  A  C  K  *  W  L  C  E  W  I  Y  T  P  S  D  R  T  I  T   </first_frame>
            <second_frame>  R  N  R  A  S  S  A  A  C  P  E  D  L  R  K  I  S  P  S  E  P  K  E  R  D  S  T  L  D  T  E  P  E  S  G  I  S  N  S  K  K  T  V  L  N  G  G  G  D  H  F  E  D  L  S  V  G  G  C  N  N  I  A  N  S  G  R  S  I  I  D  M  D  N  E  D  A  I  C  K  R  T  R  A  R  Y  S  L  A  S  F  T  L  D  E  L  E  T  F  L  Q  E  T  D  D  E  D  D  L  Q  N  V  N  D  E  E  E  Y  R  K  F  L  A  A  V  L  H  G  G  D  G  N  S  G  N  I  Q  D  N  E  N  V  D  D  E  D  E  D  N  D  A  D  F  E  L  E  I  E  E  A  L  E  S  D  L  D  E  H  L  K  D  D  I  E  E  Y  E  A  V  G  R  R  P  K  T  R  Q  T  R  R  Q  R  S  S  L  E  N  K  N  K  I  L  G  L  S  D  R  P  L  R  P  L  L  P  Y  L  P  S  S  P  Y  S  V  H  G  A  K  G  M  M  P  P  S  S  L  L  P  A  N  D  G  F  V  N  G  F  T  P  H  Q  I  G  Q  L  H  </second_frame>
            <third_frame>   E  I  E  L  L  L  R  L  V  Q  K  T  *  G  K  F  R  L  L  N  L  R  R  E  I  P  L  *  I  P  N  L  K  V  E  F  Q  I  A  R  R  L  C  *  M  E  G  V  I  T  L  R  I  F  Q  L  E  G  V  I  I  *  Q  I  Q  V  D  P  S  *  I  W  I  M  R  M  L  Y  V  S  V  L  E  H  A  T  H  L  L  A  L  H  L  M  N  L  R  H  F  F  R  R  L  M  T  R  M  I  F  R  M  S  T  M  K  K  S  T  G  S  F  L  Q  L  F  Y  M  V  E  M  E  I  L  E  I  Y  K  I  M  K  M  L  M  M  K  M  K  T  M  M  Q  I  L  S  L  K  L  R  R  H  W  R  V  T  L  M  N  I  *  R  M  I  L  K  S  T  R  L  L  V  E  D  L  R  L  G  K  P  G  A  K  D  L  L  L  R  T  R  I  R  F  *  D  C  Q  I  G  H  Y  A  L  C  Y  H  I  F  P  V  L  L  I  P  Y  M  V  Q  K  A  *  C  L  H  P  V  C  C  L  Q  M  M  A  L  *  M  D  L  H  P  I  R  *  D  N  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132377" stop="133141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRASSAACPEDLRKISPSEPKERDSTLDTEPESGISNSKKTVLNGGGDHFEDLSVGGCNNIANSGRSIIDMDNEDAICKRTRARYSLASFTLDELETFLQETDDEDDLQNVNDEEEYRKFLAAVLHGGDGNSGNIQDNENVDDEDEDNDADFELEIEEALESDLDEHLKDDIEEYEAVGRRPKTRQTRRQRSSLENKNKILGLSDRPLRPLLPYLPSSPYSVHGAKGMMPPSSLLPANDGFVNGFTPHQIGQLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 362 chains have been computed
$ 
$ memory statistics:
$ 2073600 bytes spliced alignments in total
$ 240 spliced alignments have been stored
$ 8640 bytes was the average size of a spliced alignment
$ 41600 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1808 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 391 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:33:19
-->
