<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 23:33:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337564" ref_strand="+" ref_description="SGN-U337564        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:6086954-6088342 FORWARD | Aliases: MIG5.8(evalue: 2e-32, score=137) genbank/nr: expressed(evalue: 1e-30, score=137)">
      <seq>gaatacgaagaagaaaagaaaaaattacaccaaaaaagagcaaaaatggcgttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcggtacttcatttctgtttgctacttccttatttcttataattatgtgatattgagacttaatttttgtttttgttcttcttctcttagatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccccccaaaggggcccctttaaaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6573" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6872" g_stop="7258" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="443" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9028" g_stop="9270" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="686" r_length="243" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="708" polyA_stop="729"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U337564" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6872" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA</genome_strand>
        <mrna_strand>GAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAANAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322266" ref_strand="+" ref_description="SGN-U322266        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr3:6086954-6088342 FORWARD | Aliases: MIG5.8(evalue: 5e-39, score=157) genbank/nr: expressed(evalue: 3e-37, score=157)">
      <seq>gttgcaatggatgatattgacgtacgtggtggcagcagaggcagcaatagctattctgctaacattgccatctcctaaacctctcaaatctcgttttgtttcactaatttcacttgcccttcaaccctctcttttcgtcgtccctttctctgtttttcagctcctcgatatttattggaaaaatgagcatcgattgatgtgtacgggtgagatttgcacagcttccgagagggaccgctatgagaaatcgatctacaaggctcaaagaaatgtgatcctatgtttagcggcatgccttctctactggtgtatctatcgtgtttgcaagtactacaaggagatacagagcattgaagaagtagaaaagagatacaaagaccagtagctgtctatctatgcaccaatcatattattcaaggctacttgtagctgaagtaacatctacaccatgcaatgttaacatattatgagtcttgtgtttgctttacaagccatcattatgaatcttttactactacatattgaaaagagtttgcgaaagagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6622" stop="9570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6922" g_stop="7088" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7176" g_stop="7258" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="250" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8867" g_stop="8922" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="306" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9028" g_stop="9278" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="557" r_length="251" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U322266" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6922" e_stop="7088"/>
          <exon e_start="7176" e_stop="7258"/>
          <exon e_start="8867" e_stop="8922"/>
          <exon e_start="9028" e_stop="9278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCGGTAAATTTTTCTTTTCCCCCTTTTTCGGGAACGATTTTATTTATAGTAATTTTTACTGAGTGAGTTTAAATTGTGTTGAAAAGGAAAATTGGTCCTACAGTGCCATTTCAACTGAATTCTGTGATTGATAACCAATTAGTTTCTACAATTTTCATGGAGACAAGATTTGCTTGATAACCCTGTGTTGCTTGTACCTAGATGTGGAGTTCAGTTTGAGTTGTTTAGGTGTTTGATTTACTGAAGACTGCAAGTTTAGGATTGAGATATAACTAAATTGTTATACACCTGTGTGCAAAATGGCTAATAAAGCATGATACTTAGGTTGCATATGCGTGATATTTGATTGTCATTCGTTAGAATTAGAAAAGATTTTGGATTTTCAAGTAAATCATTTGCAGTTTAAGAAGTTCGACTTTAAGTATATATTACTACTTCTTGGCTGTGTGAGTTTAGCAATAGTCATTCGTTAGAATAAGTCTTATTTTTTGTGTTCTAGTTGGTGATGCACTAAGGGTAATGCAGTTGTATATATTTTTCACTTAGAGGCAAGTTCGATGCTGGTGCTAGAAAAAGGGCAAAACCAGAAGTGTTTTTTTGTAGTCTGGCCATGAACTTATCTAGTGATGAACTGGTGATAGTCGGACATATATAAGATATCAGGTCTATTAGGAAAGGGAAGTTTTCCGTAGTTTAAGGGAACCACAAATAGGTAAAATAAACAGAAAGTAAGATAAGTTCCTAACAAATCAAGGAATGAAGGTAGTGATCATAACTTATTTTCATTTAGGGGAAGTGCTTAGTTTTTCATCAATTTATATAGCCTAATACCAATGCATCAAGCTGAAGGAAACCTTCAACTCAATTTCTTGATTGTTTGGTTGAAATTTCGGTACCACTTCAGAAATGAAGCAGCTGAAGGAACAACTGTTACTAGTCTAGTTCTGTGTTTTCAGAAAGGTGTGGCTGGCTACTGTTCTAAAGCGACTGCACCATTTTGCAAGTCTTCTGTATTTTGTTCTAACGCATCATCTAGCATGTTCGATGAAGACTACTGCACAAACATGTTTACTTCTTTAACATTATTAAAGTGGGGAAAATAGAGCATTTCAGTTGCAGGACCTCTTGTTTTTATTCAAGTACCTCAGTGGTGGCATTATGGTGAGACTGAGATCAATTAATGGCTGCTATTGGACAAGTGGATCAACCCTCTTCTTTTGTGTCCATGGATCAAATTTGTGTGATATGTTAAACGTACTGTAAATAAGAAATGGTCCTAATATTAAGTTTTTACCGGATGTCCCTGAAGGGACAGTCCCCAGATTAAGTTCATATCCTGTGATATGTAGAATCGCCTTGATCTGCAAACGTCAGTCTAGTTGTAGAGTACAAAATATTAAAGTTGGTAAATGCTGAATACTGAATTCCTGAGCTATATACCCTTGCATTTTCCGGATAATTGGGGAAATGTGCTGTGTGATGCATCGATTCCACTTGTTCTCTGTTTTTTTTCCCTTTGTTCTTGCACAGACATAGAAGCACATTGATGTTATGTATCTAGCTTATGACTTCCTTTTCGCTTCTGTTTGTGTCTCCTCTCATGTTACGCAGATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTGGTACATCAACAGAATCATTGTGTCCCTTATATGTAATTTTACTTTCGAAATGTCTCTCTTTTATAATTTAATGCATTAACAATGTGCTCTTTTATGTGTGTAAAGGTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAAC</genome_strand>
        <mrna_strand>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG.......................................................................................ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG.........................................................................................................GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320924" ref_strand="+" ref_description="SGN-U320924        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | IQ domain-containing protein / BAG domain-containing protein, contains Pfam profiles PF00612: IQ calmodulin-binding motif, PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain | chr1:4076332-4077022 FORWARD | Aliases: F12F1.7, F12F1_7(evalue: 1e-16, score=84.7) genbank/nr: gi|15221182|ref|NP_172670.1| hypothetical protein [Arabidopsis thaliana](evalue: 8e-15, score=84.7)">
      <seq>cccagtcagctcgccctggctattcctcaaacatgagaggaattccagtgcaatcgattcaccagaaacctgccggaatcaagcaggcctccaaggttgttcagattccggtccatttcgttagttcggatcccgagcggtccgttttggcctcggcgacaaagaaacctgagccggataggtccggttcagcgttgaagatccagaaggtattcagaggctttttggtgagaaaaagcgtgaagaaaatcaagttgatacgaaaagaggtggaagatgttgagcggaagcttttgtgtagagaaacggcggagttgatttgtagagatgaaagggaaaggttgcgggtgaatgagacgctgatgtctctgcttttcaagttggactccattcgtggagttgattccggtgttagggagtgcagaaaggctgtgattagaaaggccatctatttgcaagagaaagtcgactgcattgttgctgctgcaaatcaaattgcagctgaagaggagaatcaatccgatgaactctctgaaccagtcaatcagaccggagacatccccaattcaacaggaaaacaggatgaagatggaaaattgacaaatcagaatgaactttgtcatctgtcagagcagagtgtggatgtagaaactcaagcagcatcaaatgatgagaaaacacccatagagggtgaacacgatgtagcaccgctgaatgagaagcgtggaggattgcaggaggtgaagcaggaaacggactgtccaatgctcgaatgtgtggaggaaagtgtggagagaggtgaagttggggatttgatcgaagtagttgaggatgtgaatgagaatgagaatgagaatgaaacaaggtcacacaagtttgaagggggagaaaagagtaaaagaaaccgagagttgttggagaaaatggtggaaaagaatgagaatatgatgagaatgatgactgaactgtgccacaaaaatgaactacaaacacgaatgctgaattcgctggcccagagagtggatcaattaaagaaaacttttttatgtgataggttgaagacaaagaagaagaaaaggcacactgcttgattctttctgtagcaaaaatgtcatagtagattttttttttggtgtttctgggcctgtttcttgtggcttttatatttcaccctgtgatattggaatgtactgattggtaaacaaagattttggaaagtgaattataaagaaatttccatatattgttaaaaaaaaaaaaaaaaaaacttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="10825" stop="8972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10525" g_stop="9274" g_length="1252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1250" r_length="1250" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1251" polyA_stop="1268"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U320924" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1252</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10525" e_stop="9274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAA</genome_strand>
        <mrna_strand>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAAAGAGTAAAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAAAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCCCAGAGAGTGGATCAATTAAAGAAAACTTTTTTATGTGATAGGTTGAAGACAAAGAAGAAGAAAAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGA--TTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334207" ref_strand="+" ref_description="SGN-U334207        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | purple acid phosphatase, putative, contains Pfam profile: PF00149 calcineurin-like phosphoesterase; similar to purple acid phosphatase (GI:20257479) (Arabidopsis thaliana) | chr1:5058675-5061052 FORWARD | Aliases: F10B6.10, F10B6_10(evalue: 2e-69, score=195) genbank/nr: gi|7331193|gb|AAF60315.1| putative purple acid phosphatase precursor [Ipomoea batatas](evalue: 7e-75, score=209)">
      <seq>tattcaaataccaaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcaggaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcangacatcacggtgacactcagaacttgtgggatcgttttcttcctattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11926" stop="13708"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12226" g_stop="12537" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="470" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="578" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13282" i_length="290">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13283" g_stop="13408" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="579" r_stop="704" r_length="126" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U334207" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12226" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13283" e_stop="13408"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAA-AAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGT-GGATCGTTTTCTTCCTATTCTT</genome_strand>
        <mrna_strand>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG..................................................................................................................................................................................................................................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCANGACATCACGGTGACACTCAGA-ACTTGTGGGATCGTTTTCTTCCTATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313192" ref_strand="+" ref_description="SGN-U313192        Tomato 200607 #1 [102 ESTs aligned] arabidopsis/peptide: | Symbol: None | acid phosphatase type 5 (ACP5), contains Pfam profile: PF00149 calcineurin-like phosphoesterase; nearly identical to acid phosphatase type 5 (GI:10278031) (Arabidopsis thaliana) | chr3:6089628-6091999 FORWARD | Aliases: MEB5.10(evalue: 5e-116, score=414) genbank/nr: gi|39918795|emb|CAE85073.1| putative acid phosphatase [Lupinus luteus](evalue: 1e-127, score=459)">
      <seq>caaaaagagaaaaaaaatcaaaaaaaaaaaaaagaggttgggactgaagtataacaatttgtgcttctttctcaatttcctttgttgtcaaatcctaatacagaaccatggctaaattttccaataattccatggttctgtgctttttggtagccattgtttttgttatctctagtgcaagtgcatctactaggcttaagaaatttaatcacccaactaaaggtgatggtactcttaatttcttggttattggtgactggggacgaaggggtacttataatcaatctcacgtagctcgccacatggaaagagtcggagagaagttagacattgattttgtattatcaacgggtgacaatttctatgataacggattaacaggagtaaatgatacaaattttgtagaatcatttactaacatatacacagcaaagagcttacaaaaacaatggtacagcgtattaggcaaccacgattacagaggaaatgtagaagcacaactcagtccttaccttaggaaaattgatagcagatggatttgtttaaggtctttcgtagttaatgcagaaattgctgaaatattcatggtggatacaactccatttgaggagaaatatttcactactcctaaggatcacatctacgattggcgtggtgtgctccctagacatgcatacatggctagcgtagtaaaagaactcgaaaaggccttgagtgaatcgacagcgaaatggaagattgtactaggtcaccatgccattagaagtgcaggacatcacggtgacactcagatacttgtggatcgttttcttcctattcttaggaagtacgatgttgatttttacatgaacggacatgaccactgtcttgaacatattagcgacactgaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatggtgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccaacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggaataggtccaagaatcttcttcactctgctatgtaaaaaaaagattcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgtttttgttgttgttgttgagattggattgtgaaaggaagtaatctcacacatttagggttaatgtattagaatttagatggaataacatatgacagttttgctcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="11937" stop="14333"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12237" g_stop="12537" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12622" g_stop="12778" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="459" r_length="157" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12885" g_stop="12992" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="567" r_length="108" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13066" g_stop="13193" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="695" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13283" g_stop="13411" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="824" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13489" g_stop="13556" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="825" r_stop="892" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13638" g_stop="13978" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1233" r_length="341" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1277" polyA_stop="1298"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U313192" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>1232</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12237" e_stop="12537"/>
          <exon e_start="12622" e_stop="12778"/>
          <exon e_start="12885" e_stop="12992"/>
          <exon e_start="13066" e_stop="13193"/>
          <exon e_start="13283" e_stop="13411"/>
          <exon e_start="13489" e_stop="13556"/>
          <exon e_start="13638" e_stop="13978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGAGAAAAAAAATC-AAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCACGTAAATACCATTTCTCTTTTATTCGTCTTTCGTCAATTTTATTAATGAATCGTGTGATTAACTCATTTAAAAACTTATATACAGATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCGGTACGTTTCTCAAAATAAGTACAATTTTATTTTTTACTAGAGCTGTAATTATAGATTGGTCTAGCCTATATTGACAGTTCTAATTATAACTTTTGTTTTTGCGCAGTATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAGGTACAAATTGATCTCTTGTTAAATAATTTAATCAATTTTATATATTCGTCGTTCTGATTTTGATTGTTTGAAGAAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAAGTAAGTTCAATGTAGACTTCATCAATATTTGTCTAAAAATCATTTATCGTACATTTTAATTTCAAATGATCTATTATTTTTTTTAATAGGAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGGGTAAACTTTTTTCTCTGTTTCATTCACATTCCTTTTGACTTGAAATGTGCTTATAACGTTATTGATTTGCCTTACAGAAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTG---TT-TT-TTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTC</genome_strand>
        <mrna_strand>CAAAAAGAGAAAAAAAATCAAAAAAAAAAAAAAGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAATAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCAACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC....................................................................................ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAACGGATTAACAGGAGTAAATGATACAAATTTTGTAGAATCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG..........................................................................................................TATTAGGCAACCACGATTACAGAGGAAATGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTCGTAGTTAATGCAG.........................................................................AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACTACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA.........................................................................................GAACTCGAAAAGGCCTTGAGTGAATCGACAGCGAAATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG.............................................................................AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGGTGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCAACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAATAGGTCCAAGAATCTTCTTCACTCTGCTATGT----AAAAAAAAGATTCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTGTTGTTGTTGTTGAGATTGGATTGTGAAAGGAAGT-AATCTCACACATTTAGGGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313191" ref_strand="+" ref_description="SGN-U313191        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | acid phosphatase type 5 (ACP5), contains Pfam profile: PF00149 calcineurin-like phosphoesterase; nearly identical to acid phosphatase type 5 (GI:10278031) (Arabidopsis thaliana) | chr3:6089628-6091999 FORWARD | Aliases: MEB5.10(evalue: 4e-25, score=93.2) genbank/nr: gi|39918795|emb|CAE85073.1| putative acid phosphatase [Lupinus luteus](evalue: 7e-19, score=95.5)">
      <seq>tgatttttcatgaacggacatgaccactgtcttgaacatattagcgacactgaaaagcccgttgcaatttttagtaagtggagcaggttcaaaggcatggagaggagatattaaaggaataaatagagatgatgtgcattttttccatgatggacaaggtttcatgtctgttgagttgacaccgacagaggctgagatcaaatattatgatgtttttggtagaattagacataggtggagtaggtccaagaatcttcttcactctgctatgtaaaaaaaaaaaagaatcttttttggttgtagatactaagttagatgtagaaaagaaattggattctttgttttttgttgttgagattggattgtgaaaggaagtaaatctcacacatttagggttcgtttgggttcaatgtattagaatttagatggaataacatatgacagttttgctcatgtttgattaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="13200" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13500" g_stop="13556" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13638" g_stop="14062" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="482" r_length="425" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U313191" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13500" e_stop="13556"/>
          <exon e_start="13638" e_stop="14062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTG-AAAGGTGAAACTAGACTTCAAAATGTTGCAAAATGACTTTAATTTTAGCAAACATGATGTTGATTTTTGTGTTTGATGTTTGTAGCCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</genome_strand>
        <mrna_strand>TGATTTTT-CATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAAG.................................................................................CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318451" ref_strand="+" ref_description="SGN-U318451        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>aaaaaaagagagagaaagaagaaaagagggagaaagaaaaagagaagaaaaaaaagaaagggatggtttttggagagaattttttttttacatcttgtgatagaaaaaaaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggttttttattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagctcgctgccccgaagaaggtgaaattctttttttttcttttttctttttagatgttgtcattccaccttgctaatattttttttttttttgttttcttgtgtgacatcgattcgagtccattttggattccattcttgcattcctcgttgagccataaaggctcaaaacacttttcccgagtcagccaaccccctgaaaggatgtacaggtcgaaagcaaaaccattggagagctgctggaagtagcggattgcaggcatttggctgtgatttttgttttgaagttgtgtatctggtttatacacaatatatacactgtgatacaggtcaaaaatccacaggaggcccaaattcaaaatctgaattgatgacaggaaaattgcgtttctggaaaggagttttcaacttccgaaagttgaaaaacaggcttatatacagcctgtatacacagatatacagagatgatatactatatatatgctcaaaaaatatgattggcaggggaacgtacacggatgcttgttttaactaaaattcgggattaggcaattaatacggacgcagggtgcagcccgtatacattagtatacattatcgggcgacgatatataattgttaaacaggtttaaaaaatgatacaggtacaaatatgcagagacgatatgcgaaatataggggaaatagctgaaaatgcgtatataaataaatgcagggctcaaaaggtccaaaatggatgctgatatacaccgtatacaacagtatacatcttttgtatactttatatctcctttttcaggaaattgggctaaggcccttcagttcccttttatcaacaggcccaataaccatttgtttttacaggttttttttttaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15595" stop="17341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15886" g_stop="17041" g_length="1156"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="1158" r_length="1157" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U318451" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>1156</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15886" e_stop="17041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTTGGTGGAGAGAAAGAAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAG-AAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAA-TC-CTTTTTTT-TTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</genome_strand>
        <mrna_strand>AAAAAAG-AGAGAGAAAGAAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAAAAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTTATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTCGCTGCCCCGAAGAAGGTGAAATTCTTTTTTTTTCTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAA-TATTTTTTTTTT-TTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGTGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318452" ref_strand="+" ref_description="SGN-U318452        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gaaaagaagaaaagagggagaaagaaaaagagaagaaaaagaagaagaaaaaaaagaaagggatggttttctggagagaattttttttttacatcttgtgatagaaaagaaaagaattattgaaagagtttattcataggaagattttacaatagtttaagcacacctatatatctattgaagttgaattaaaaacagaaggattgcggggtttttgattatcatttgaattcgaagttgtgtagtggaaggtcatccctttgctcgtttcgtctctagcttgctgccccgaagaaggtaatcctttttttttctttcttcttttttagatgttgtcattccaccttgctaactatttttttttgttttgttttcttgtgtgacatcgattcgagtccactttggattccattcttgcattcctcgttgagccataaaggctcaaaacacttttcccgagtcagacaacccctgaaaggatgtacaggtggcaagcaaaaccattggagagctgctggaagtggcggattgcaggcatttggctgcgatttttgttttgaagctgtgtatctggtttatacacaatatatacactgtgatacaggtcaaacatccacaggaggcccaaactcaaaatcggagttgacgacagggaaattacgtttatggaaaggagttttcaacttctgaaagttgaagaacaggcttaaatatatcctgtatacacagatatacagggatgatatactatatatatgctcaaaaaatatgattggcagaggaacgtagaggaacacctattctaattaaaattcggaattagggggggggggcggacgtatggtgcagcccgtatacataagtatacattatcgggcgatgatatacacttgttaagtaagttttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15594" stop="17095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15928" g_stop="16795" g_length="868"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="911" r_length="869" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U318452" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>868</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15928" e_stop="16795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTT-TGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTT-TTT-TTC-TTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAA</genome_strand>
        <mrna_strand>AGAAGAAAAAAAAGAAAGGGATGGTTTTCTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGCGGGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAGCTTGCTGCCCCGAAGAAGGT-AATCCTTTTTTTTTCTTTCTTCTTTTTTAGATGTTGTCATTCCACCTTGCTAACTA-TTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCACTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGACAA-CCCCTGAAAGGATGTACAGGTGGCAAGCAAAACCATTGGAGAGCTGCTGGAAGTGGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGCTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAACATCCACAGGAGGCCCAAACTCAAAATCGGAGTTGACGACAGGGAAATTACGTTTATGGAAAGGAGTTTTCAACTTCTGAAAGTTGAAGAACAGGCTTAAATATATCCTGTATACACAGATATACAGGGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGAGGAACGTAGAGGAACACCTATTCTAATTAAAATTCGGAATTAGGGGGGGGGGGCGGACGTATGGTGCAGCCCGTATACATAAGTATACATTATCGGGCGATGATATACACTTGTTAAGTAAGTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339705" ref_strand="+" ref_description="SGN-U339705        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>taaatagattaggacaggtgggccaaagcccaattggatggatttgggcaatcaagcccaagttcaaatatttttctctctttatttattatttgtttgaattaattagtgttttggtagaattttaataatctcctaaagagtagccatttttcattattttaaattttactattttattcacttttatcaccatttagttttccttaaattaattccctctaaacattttccttaagaaaaaaaaaagtaaaaagaatgaaatacaaaatatcaaaatgaattttctcttttacttagttaaaaatttttattttaaaagtcatttagtcaaatcgccggtcaaccgcaagttagcgggcatcccgagggcctaacaccttctcgagatgtacattgaacttcgaacccttttcaattgatttttaatctgtttttnaatcttttgaagtttttcttgattttgtcaaaaatcaagtggcgactccaattttgaaggtcggtttttctttaacaataagattaattgatttttcgaaacctagtcaattttttctcatttctccattttaacataacagtagtatattttttaagtaaaacacataatactcatgtaataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="16757" stop="17980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17057" g_stop="17679" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U339705" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17057" e_stop="17679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATT-CCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTAT-TTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</genome_strand>
        <mrna_strand>TAAATAGATTAGGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAGCCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCCTCTAAACATTTTCCTTAAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAACTTCGAACCCTTTTCAATTGATTTTTAATCTG-TTTTTNAATCTTTTGAAGTTTTTCTTGATTTTGTCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTTAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCATTTTAACAT-AACAGTAGTATATTTTTTAAGTAAAACACATAATACTCATGTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330662" ref_strand="+" ref_description="SGN-U330662        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>agccttgttgaacagtttttaccattcgtgaagcagttctaaacttctagtaatggcaatagtgattgttcaataacaacatacccagtgcaattctacaagtggggtctggaaagggtagagcgtgtacaaaaccttacccctaccttagaagatagagagattgtttctcatagacccttggctcaagaagaagcatatcaaagcagttcgggaatagtgattattgtgtatggtaaatacactagaacatcagaaatattcaaacaaaaccaccagctagcagaacgcagtttactggataaaggaacagtgaaaaaaagaaattaagagcctagaatttgggtccgaaatgatgaggaaaacttgtatacttactaaagtttcgtgttataggtttctcttttgtcgctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="29622" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29922" g_stop="30336" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30337" i_stop="31112" i_length="776">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.141" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31113" g_stop="31136" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="440" r_length="24" r_score="0.667"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U330662" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29922" e_stop="30336"/>
          <exon e_start="31113" e_stop="31136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTAC-AAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACAGTAAGGGCAGCAAGGGGATGATGAATTACTGGCTGATTCATTCCAACCTTTTTATTTATTTGCAAATAAGAAGAAAAAAAAAGAGAGAAGGGTTGTGGGAAGGTGAGGCAAGCATAATTTGTTGAATAACCTTTTAGGAAACATGAATTTCCATATTGATCCAGAAAGGGAATATAAGGTTACATTCAAAATACATGCGGCAAAAGAAACTATAAAATGCACAGCCAAAAAAAAGAAGTGATTAAGTGCATGTAGATTATTGTACATTAACGAAAACAAAAAGTACAAATGTTTTCGCCATGACAGAGAGTTTGCATATTTGCATTTCCATTTACACAATAGCAGAAAGGGAAAGAACAAACTACTGGTAGTTGTTCAATTGTTGTAAACAACAGAGAAGTTCATAAGATGCACGCAAAAGGCAAATACCCCAATTACTATGCTGAGAGGCAATTCATATAGAAAGACAACCAACATTCAGATTACTCAAAGTTCAGGTCATTGTAATAAGCAAAATATTTAGCATGAATACAAATGCGAACTGAACAACACCCAAGTAGCATATGTCCAACTAAACAAACTTGCTTTACTGTCATCCTTTTTTCTGAAAAGATCGGTAGCTCTAATTTTCTATTAAACTTCCATCTAATTCTCTAATGCTCACATCACCATTTGCTCTTTATTTTAGATTACCATTGTTAATAGTGTGTCCAAGCAGAATCATGTGCTTGAGGTATAACCTTCACAGTATCTTTCCTTTATACTTTGCATGATAGAACACTTAAAAAATAAAGCGAAAA</genome_strand>
        <mrna_strand>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAAAGGGTAGAGCGTGTACAAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316790" ref_strand="+" ref_description="SGN-U316790        Tomato 200607 #1 [24 ESTs aligned] arabidopsis/peptide: | Symbol: None | dihydroxyacetone kinase family protein, contains Pfam domains, PF02733: DAK1 domain and PF02734: DAK2 domain | chr3:6081677-6085963 REVERSE | Aliases: MIG5.7(evalue: 0, score=874) genbank/nr: putative(evalue: 0, score=1050)">
      <seq>gaattcggcacgagcctctataaatcttttttttccccttctctctctttttgtgtttgttcagacttcggacaaagcattcaacaattgaagtctactctccccacacctacaaagccctcagcacaattatccgatggattttcagagcaaaaaactcatcaacgaccccaatgatgttgtgacagagttcattgagggacttattgagaattatccagggttgcagtatctggatggtttcccagaggttaaggtcgtcttgcgtgctgatgtttctggtgcaaaatatgacaaagttgccatcatatcaggtggtggaagtggccatgagcctgctcatgctggatttgttggagaagggatgctgactgcagctatctgtggggacgtttttgcctctccaaatgttgattcaattcttgcgggcatacgagctgtcacaggtcccatggggtgccttcttattgtcaagaactatactggtgatcgactgaattttggtttggctgctgaacaagcaaaatctgaaggttataaagtcgagatggtaatcgtcggtgatgactgtgctttaccacctccaagaggcattgctggccgaagagggttggcagggacgcttcttgttcacaaggttgccggagctgcagcagcttgtggtcttccccttgctgacgttgcagctgaagccaaacgtgcatcagaaatggttgggacaatgggcgttgcgttatctgtttgcacgttgccaggacaggtgacttcagaccgtttaggcccagggaagatggagcttggtcttggaatacatggggaaccaggagctgctgtagctgaccttcaaccagtagatgtggtggtttctcatgttctgaaggagattttgtcaccggagaccaactacgttccaatcacgcgtgggagtagagtcgtgctcctgattaatggattaggagcaacaccattgatggaattgatgattatagctggcaaggctgtcccagaattgcagcttgaacatggtctagctgttgatagagtctatacagggtcatttatgacgtcacttgatatggcaggcttttcaatttcggtaatgaaggctgatcaagcaattttagatcgtttagatgctccaactaaagctccaaattggcctgttggtgctgaaggcaaccggcctcctgcaaagattcctgttccacttccgccatcacattctatcaagattgaaaagacattgagtcggcctgaaaaactgagccctcagggtcatatccttgagacagctattgaagcagcagctactgaagttgtaaatctcagggataatttgaatgagtgggacaataaagttggtgatggcgattgtggttcaactatgttcagaggtgctgtggctatacttgaagacatgaagaagtactatccgttgaatgaccctgcagaaacagtcaatgaaattggagcctccattggaagagtaatggggggaactagcggtatcttatacagtatattctgtaaggcagcatatgcgaagttgaaagaaaatgctgagtcggttgtcacagctattcactgggctgatgcacttgaagctgctatcgctgctgttagtaaatatggaggagctagtgctggttatcgtacccttttagatgctcttataccagcattgtcagctcttaaagagaggttgaatgctggggacgaccctgcggatgctttcattatttctgctgaggcagcatctgctggagccgagtcaaccaagcacatgcaggcgcaggctggccgttcaacctatgtacccggagatattcttgcatcagttcctgacccaggtgccatggctgcagctgcgtggtacagagcagctgcgttagctgtgaaggagaagtataatacagcataagcatatttaatcggccattcctattacttcctgcaggaatgttttctctttctcgaggaagaaattaacccaacaattttttgctcgtaaaccttatgaggagttagctttccgcttatgcagtcctgcataaagccgagagagtgtagaaaatgtatgttacagtccttttatacagtgttctaagtgagggaaaaaacaaacactgccatgtagaatggtaatctgtgaaggtggttgtaaactttattgtaacaatggattttcttattctgctacttttagcatctcttcgcgcacctttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36173" stop="47259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36473" g_stop="36582" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="124" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36672" g_stop="36723" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="176" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38256" g_stop="38329" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="250" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38440" g_stop="38503" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="314" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39260" g_stop="39372" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="427" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="39470" g_stop="39517" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="475" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="39769" g_stop="39840" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="547" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="637" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="41120" g_stop="41293" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="811" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352">
            <donor d_prob="0.210" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="41646" g_stop="41729" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="812" r_stop="895" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.709" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="42520" g_stop="42575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="951" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="42914" g_stop="43044" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="952" r_stop="1082" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="43113" g_stop="43205" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1083" r_stop="1175" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="43498" g_stop="43562" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1176" r_stop="1240" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="43794" g_stop="43937" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1241" r_stop="1384" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="44022" g_stop="44065" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1385" r_stop="1428" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="44923" g_stop="45006" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1429" r_stop="1512" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="45107" g_stop="45180" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1513" r_stop="1586" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="18">
          <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="19">
          <gDNA_exon_boundary g_start="45270" g_stop="45382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1587" r_stop="1699" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="19">
          <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="20">
          <gDNA_exon_boundary g_start="45472" g_stop="45567" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1700" r_stop="1795" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="20">
          <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.785" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="21">
          <gDNA_exon_boundary g_start="46526" g_stop="46962" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1796" r_stop="2232" r_length="437" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U316790" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>2218</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36473" e_stop="36582"/>
          <exon e_start="36672" e_stop="36723"/>
          <exon e_start="38256" e_stop="38329"/>
          <exon e_start="38440" e_stop="38503"/>
          <exon e_start="39260" e_stop="39372"/>
          <exon e_start="39470" e_stop="39517"/>
          <exon e_start="39769" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41293"/>
          <exon e_start="41646" e_stop="41729"/>
          <exon e_start="42520" e_stop="42575"/>
          <exon e_start="42914" e_stop="43044"/>
          <exon e_start="43113" e_stop="43205"/>
          <exon e_start="43498" e_stop="43562"/>
          <exon e_start="43794" e_stop="43937"/>
          <exon e_start="44022" e_stop="44065"/>
          <exon e_start="44923" e_stop="45006"/>
          <exon e_start="45107" e_stop="45180"/>
          <exon e_start="45270" e_stop="45382"/>
          <exon e_start="45472" e_stop="45567"/>
          <exon e_start="46526" e_stop="46962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAGGTTTTTCTTTCTTCTCAAAGAAGACACTTCACTTTTTTTTCTCTTTCTCTTTGAATTTTTTCTAATTTGTATCGCCTCTGTAAATGCAGCACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATGGTAACTGAAACCCCTAAAAATTGCTCTTATCGTTTTTACTTTGTTCTTCTTTCTCAATTGGATTGTTTATTGGATGTTGATGTGACAGATTGTTTATGTGCATTGCTTGTCATGTTCGTTGAATTGAAAGATGAGATTTTGTATAATTTGAGAAAGGGATTTTTTTAATCAATCGAGTTGTTTGAGTATATACGATCCTTTGTGGAAGTAGAAAAGAAAAAGAATTGACATTAGTGTTTTGTCTTGTTGGAAATGAAGGGAAGTCAAATATAGGAATAAAAAAGATTTAGTTTTAGGTATTAGGTAGAACTACTTATTTGCTATGCTTATCATACCAAACCTAAAGTAAGAGCATATGTGTAGAAAGGAGAAAAGTGTTTTGTTTTGATAACTGTGTTGTCCGGTTTCCGGTTTCCATTGTCTAGGACAACTTACCCTCAGTTAGACTAATTACACGGGGTACTAGCTAATGCGTAATAACACATATATCGATTAACTCTGTCCACCGCGGTATGGATAGAGGGGAAGAAATCGCCTAGTGCTTTTTGCCTAGGGATTTGAACATGAGAATTCATGCTTCTCAATTCACTTCGTCAACCACTAGGTCACATCTTTGGACGCGCCTTTTCGCTTCTAGAAATCTAGAACATTTATGGACCAATGTAAAAAAAAGAAATTCAACATTTTGACAGTAGCGAGGAGAAGGAAAGGAGTTGAAAGGGGCATGTATCCTTTTTTTTTTCTAAAGAAAGAGGGCTACTTCACGAGTCGCTTCTAATAATTGAAAAGGTTCACAACTAGTTCAGTCTATAGTGACAAAGGGAATGTTTCTGCCGGAGCCATGGAAAAAAGTATTCACTCCTGCTTACAGCACCTTCTTCACTCGTCTCGCTACTTCAGAACTGTTCAGCGGACACGTGGAGTCAAATGCAAACCATTTGTGGGAATTTGAGAACTTTCTCTTTTATCTCTTTCTCCTTGCTGGAAGGCTGTTTATGAGCGGAAGGGAAGTAGAGGTAGAGGGTCCGAAGGAGAGAGGAGATCTCTGCTATTATCGTTAATTAGGTGTGCCTCCAGATCCGAATGTATACCCTAGGCCAAGGGGTGCGATCACTTACAATGATCGGAGGCAGGTCAGGGGCTGGCGGATGCCCCCAGCTTCTTAAGTTTGGGAATTCCAAATGTTCTGGCACTTAATTTACATTAAAAAATGAATTAGTGTGGTAATGAAATGGGCCTGAATATGAAAGACTGGATGTATAAGGTTCACGTAGCTGATCAGAACTAATTTGGAATTGAGATCTAGTTGAATGACATCATATTCTGTTTCAATAGAAATGTATGTACATTAATATTTTCCTTATCAAAATTAATAAAAGAAATGTATGTACACTTTTGTGTGTCATATGTATGTGGCAGAATTAAATGTTATAGAGCTTTGTGAAGCTTATAATAGGTACTGTAGGTCTTATGTTATGTATGTAAATCCTAATAATTATCTGCTGTAGAGACTGAAGTGCAATGATTTGCAGATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAGGTGATCTGCCTTCAAATACTTTGTTGACTTTTTTGTTTACATGTCTCTCTACTAAGATAATATGTGTTGCAAGTTGGTTGTAACATGTTATCTTCTGTGCTGAACGCCAGGTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAGGTTTCTTCAATTTGAACTGTGTTTCATGTCTATATTTCAACACTGGAGTTTGCGTTTCAGTGGTAGCAATAATAATTTGGCATTCAGAGTGTCATACACAAGTTAGAAAAAGATCAAGCTTGACAAACTAATCAATCTGTATAATAGTGAAACTGGTTCTTATAATCAGTTAATACTATAGGTCTTGTATGCATTCCTTGCTCACCTCCTCTGAAAGATAATATCAGTTGCGTATGAGATTCTGCTGCAGTTTTGTGTTTAAAACTAAATACAGTTTTCAGTAGTTCCTTTATATGCAATGACTAATCATTTTCTGTTTCATGGGGTGATAATTTTATCAATGTGGTTCAGATCTTCCCATAAAGAAGTGGTATAGAACGTAAAAGAAATTGGTTCCCTACAAATGACTCCTAAACATCTAACACTAACATAAACCTCACGGGTGCACCAAAACTTTTCTAGAAATAAAAGGCATGCTCCGAATGCACAAAATTGTTTTCCACTCCTTCAAGGCTGTCTTGTATATTTCCCATAAGTACCCACATATTAGCCAAAGGAGCGGCATCCCATCCTCTGCATCTTCTTTTCCTTAGCTGGACAGAACAACCTTGAACTCTAGCTGCCATTGACCACTAATTATATACGAATTTACGACTTAAAAGTGTTCTTGAGAATCTTTAACTTGGGATGTATCTTTGGAACTTCAGTGAAGTGAAGTGCAGTTTAACCTGGTATCTTGGTACTTCTATAACTTAGGTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCGGTATGATATGCTATTAAGTATTACCCCCTCTGTTAGCATGTAGACATATATAAATTCTTCCCTATTTATGTCTGTCTACTGACCTGATTCAATTTAGGGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAGGTACCACTTATCCTAGCTGTTAATTTTATTCCTACCCTTGTCTAGTTTTACCAGTTAGGTTTAATGGGGTTGACAGTGCACATAAAGGATCACCAATTATCATCCTACTTTTGGATATTTACTGTTGAAAGAAAGATGCGGCGGATTGCTGTTACATTCTTCATTTATGGTTAATAATTTATAACTCATAATGAAGTCATTTCATGATTTGCTTACATTTCATGATTACAATGCGCTTTGGTTCTTTACAGAACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATAGTAAGTTCCTTCTTAGGCACAAGGGTACTAATGATTGATATTAGCAATGGGGAAGAAGTTGATAAGTCAAGCTTTACTAGATGAAACATGTCATATTACATTCATGTTTTGGAGACATGATAATCCTGTAATTTACCTTGGGGGTGCTGTGAATGCCGTTCATATCATTTCTGGTTATAGCATTTCTACACTCGATGTTGCTTTTCAATAGTAGAATTGGTTGGGTCTCTTCAAATGTGTCTGTGCTACAGTTGGAACTTCCAAGGTCTAAGTGCTGGCAGACTTCTTAGAATTCTGTAATCTTCAGTTATGTATTATCAAATTGTTTGCACTGGTTTCTCCTTTTTTTCAGCATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCGGTATGTGAATACTTGGAGTCTGAAAGTTTGACTTGATATGAACTAGTACTTGATGCACTAAAAGTTTTCTGATAATTGTTTGAATGATCACTATGAATTGGATGAAGTGGAATTTACTTTTTGATGAGATAAACTTTTGATCTTTCTTTTGGTACTAAAACAAATGAGGAAAGTGACTCCAAAAAACTATAACCATGTAGATCTAAGGATTTAATCTTTGCCATTCGTGTACACTATAAAGCTACAAGGACTAATGATGAGGATTTTAATATGTTTTTATTACATTTTTGTGAAAGAAGATAGGCTGGGCAAAATATTCTGTTTGGGGTCCCAACATCTTGTAAGAATGAAGAGCAAAGTAGAAACAATTTTTGGAGTTGAACTATTAACTGAAACACATAAAAAATAGTCATTCATTAGTTATGTTAATTTAGTAGAGGGAAAAAAAAGAAATAAAGAAAAAAGGCACTAGCTTTAGTTTGGGAGTTTTTATGCAATCAGTCTATTCTTCTCACCTTCTTTCAGTGAGGTTGTGGAGGATATTCACATGACAATTTTTCTTGTGCATTAACCCCCCCCTCAAAAAAAAAGAAAAGAAAAAAGAGAAGTTGGAATTCCTCCTAGCTTACTCCATCGAATTTTCATGGGCCAGAGGGGTCTAGTTTTAAAAGAGGAAGTCTTTCAGGAAGAGGGACTACGAATGCACAACAACAACCTTGGTCTCATTCATCTTAGTTAAGAACACTTATTCTGCAGAAGGAAATTTCACTGTCACTGAATGTCTTTGTAGGAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGGGTAAGTTTCAGCTCTACTCGTCTATATATGCCTCTGTCATCACATCCCTCCAAGTATTGTGGCGGTTTAGTTATCCCGTTCTGTTCTCATTCTCTTTTGCCTTTCTGATCCTTTCCATTTCTCGCATTTTTGGTTGACGGAGCAGATTCGGTTTTATAGTATATAGAAAGATCTCCTGGTAGCATGCTTACCCCGTATCTGACCTTGGCCCCTATATAGTTTTCCTTGAATGTTCCATTTGGTTTTTGTGGAATACTTCAATTAGACTCCTCAAATTTCAAATGAAATCATTTTTCACATTTTTCTGTGTACTTTTTCTTTTTACTCCCCTACTGCAGATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAGGTATATCAGGTTATAAGTCCTTTTTCTTCGCCCAACAACAGTCATTTTCTTACTATAGTTATATGCAGGCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAGGTCAGTTTCTATTTGTCTATTATTACGTTGGACTATGTATGGCCATATTGGTGGCTCATGCTAGTTTTGACTTCTGGTTCCTTTTACTATTTTTATTAGGAAAAGCTCCCCCTCATTTATATTTCCCTTAGTAAAAGAACTAGAGCAGAAAGAAAAGTTCATATTAGGTAATTCAGTAGTATTCTCTTATCTGTGGGTCATATAACTAGCGCATAATCTGTGTGATTTTGTAGCAATTAACCCTGTATTAGATAATAGATCTACTTTGCTTACTGGAAATTAAAAATTTCAGGCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAGGTATGCCAAATTTAATTTGAAAGCACTGATAAACACATTGCAAATAAGGGTGATGTCGCTGATACTTGATAAATATTCGATTGAACAGTCGCTGTCCCAGACATCAATTGTAGCTACTGCTTTCAATTTTCTTTTTTTGATTTTTTAGGTTGAGAGAGACAGCATATCATATTATAATTCTGTTGCAGATCAATAATATTTACTATTTTACTGTATTTCTTCTTTTATTAGACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACTGTAGGTCTTTGGATAGCCCATTTGTTTCCCTTCATTTGTTCCCCATGTTATCTGCATTTAATAAGCTCCTTTGTGAAACTGCAGATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTAGTGAGTCTTCTTTCCTAGATTCTTTCCTCATATAATGTCTCCAAGAAAGTTAAAGGGAGGCTGATTAGTCTTCCCAAGATTCTGCCTCTCCTTTTTATCTCTGGTAAGAGCGCCCCCAAGGCCTAGCTCGAGTGGCAAAGGGTGGAGGACTTATGGCTTACGTCGCAGGTTCAAGCCCCACACCATGCAAAGCGAAGCCCAGTATTTAAGTGGAGAAGGGTAGAGAGGGCCCATTATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTCATTTAGTTATTTTTATGTTTCTTTATTTATTTCCTTTTATCATCTGTGTCATTTTTTGTTCATTTCCCCTCTTTCTTCACTTTTCAAGGTTATGTAAACCAACCTATAGGTTTTTTGCGAGTTTGCTGTATGAATTTTAGATAGTTGCGTAACAACTGCGTGAATTGAGATTATATATTTCCATCTTCGAGAAAATTTACTCCTGCTTTCTGATTCTTCTTTCTTGCAGCTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTTGTAATGCACTTTCCATGTCTCATTAACTTTACCAGTTCTTTCTTTCAACCAGGATTTTCCTTAAATTATCAATGCCACTAAACATCTATCTTTATAACAGATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACTGTAAGTTAACTCCTTGGCAGTAAAGTTTAGACTTGATGTTTGTTGCTTCCAACTATTTCTTTGTGTACCAATCTACTCTTTTGATTCAGGGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAGGTCAATATAATGCTTTTTCATGATACATCATTTGCAATTTTTTCCTACATATACCTTATTCATCAAGAAATTTTACGCATTGGGATCAGAGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAGGTATTGTCGCTATATTTACTTCTAATGCGTTGAAAGGAAAATAGCGCACACGGTGTTGCAATGGTTTATTTCCACAAATGTTACATAGTTATGTGGTTAGCTCTTAAAAGGTTCATAAATATTTGACAACACCAGAAAAATATTGTAGCTTAAGCATCTTTAAAATATGGAGCAACTGTAAAGTACCCTTATGCTTGTCTTTCTTCTTCAGGGACTGTTACACCTTTAAGCATCTTCACCCTATTAGACTGAAGTGATAATCCAGGATGAAAATGTGTTTGTATCCTTTTCCTCTTTGGCTCAAATCAACAAGGAATCAAAGTTGAGATATGATTAACGTAGTGATTCAACAAATTTATCTGGCTTTATAGGTCTCACATAAGGGAAGATATCTGTAGTTTATTAGGATTTATTACCAAATCAATAGAAAATTTTGGTCACACCCATTTTTCCAGATTTAGATCAGTACCTGGTTTTACTTCAAATGAAATGACAAGTCTGAACTCTTAGAATATGTCTTGACGGAAGGGTTGTTAAATGACACCTCTAGAAGGTTTAAAGTAAGTTCAAGATGTGATTGATATTTAAAACTTATGATTGAAGTCTTTGTTCTAATGGGTAAAAATTCATATGAATCTGCGCTTTCTTGAAAGATAGCTTGGTAATTACCGGTCTTCTGACATAAATAATAGATTTCAATTTTTCATGGAGATTTGGACTAGGCTGCTTCAGGAATTCTCTATTGATGTTTTTATTGGAAGCTTTTGCCAAGAATTTTGATAAGCAATTTTCTGTACATGTCTTCCTTTGAATGGAGGCGATGCTCATTTTATTTTGAGTGCAATTGCGAAGCTTATAACAGAAAAATTGTAGATCTGTCTTGATCCATCTTTAAATCAGTGTTATCTGGCTGCCAGTTTCTTATTTCAGTAAGAGTTATAATCAGTCTGTTTTCTAGGCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</genome_strand>
        <mrna_strand>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG.........................................................................................CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG..............................................................................................................GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG.................................................................................................GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG...........................................................................................................................................................................................................................................................AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA................................................................................................................................................................................................................................................................................................................................................................CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG..................................................................................................................................................................................................................................................................................................................................................ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG....................................................................GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG....................................................................................................................................................................................................................................................................................................GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG.......................................................................................................................................................................................................................................ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT....................................................................................ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT....................................................................................................ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT.........................................................................................GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG.........................................................................................AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335831" ref_strand="+" ref_description="SGN-U335831        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | dihydroxyacetone kinase family protein, similar to dihydroxyacetone kinases; contains Pfam profiles PF02733: DAK1 domain, PF02734: DAK2 domain | chr1:17906383-17910461 REVERSE | Aliases: T1N15.4, T1N15_4(evalue: 7e-38, score=117) genbank/nr: putative(evalue: 7e-27, score=124)">
      <seq>cgactgaattttggtttggctgctgaacaagcaaaatttgaacgttataaagtcgagatggtaatcgccggtgatgactgtgctttaccacctccaataggcattgctggcctaaaagggttggcaaggacgcttatcgttcacaaagctgccggagctgcaccagcttgcggtcttccccttgctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="39484" stop="41461"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39784" g_stop="39840" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39984" g_stop="40073" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="147" r_length="90" r_score="0.911"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.997" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41120" g_stop="41161" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="189" r_length="42" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U335831" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39784" e_stop="39840"/>
          <exon e_start="39984" e_stop="40073"/>
          <exon e_start="41120" e_stop="41161"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAGGTATCATTGTGATATCAGTATAATTAATTTGTTGCTATTTATTATTTTTAATATGATGACAATGATTGCAGTAGCCAAGTAATCATCAAAAACTGGCAGAAAGTACTCACTGATATACATGCATATATTTTTCTTTATCCCAGATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAGGTTCACAATCTCTATCTGCGTGCATGTCTTTTAGATTTCATTTGAATGGATATATTTGACTTCAGTCATCACTGATTGAAGCTTTTACAATTTTCCTCTCAATTCAAAACAAAATTTTTCCTTTTGATACCACCTACACAATATATTGGAGTTCTATGTGTTTTGTGTAATATATCTGCTTCTCTTTCCTTTAGTTCAAAGTGCATTCACATATTTTTATGGGGCCTCCTATTAAATCCATTGAGTTTCATATTAGTGTGGCACAATGTTTGATAGAACAATATAATTCATTTTACTGTGCCACATTACATAATGTTGTTCCAAGGTCACAAGAAACAATAATATTAATTATCTCTTTGGTGTTCTTTACTTTTCAATGATACATAAGAGAACTATTAGTTACCAGTTTAAAAAAAAAATGTAAGAGAACTATCTCTGATCATTTGAGTGACAACATTTTCAGCTATTTAAAATGCATACTGAGAAAGCTGGTAATTTCAACGTTTTGAGACAAATAGTACTTTACTAAAAAACCCAGCTCCTAAAAGCTGGCAAATCGTACTAAAGTAAATTAATATATACAGATATTTGTTGGAAATTCTTACTTTGTACCTACAGCAACAAATATATTTTTTATCAAGGCGATTCTAGGTGTTACATGTCCATCATCCTATGTGTTCACATGTTTCTTTATTTCTACTTATGGTGTATCTGTGTCTGTTTGTTTTTTCGGGATGGTGGGTGGTTGGGGTCAAATACCCCAATTATCTGAAGGGCACCAAATTTTCATGGTCTTTTGACAAGTTGTTTTTTCAATGCTCTGTTATAGAGGGTACCTGGAATATTGTTTTGCTTCTTATGCAGAACTATCCATATTTACAAAATCTTTTCTGCTTCATTGTTGAATTCAAATTTATGAGACACTGGCTAGTCTGTGTAGCAATCACTTTACCTATTTGTCTCGCTGCATGTTTGGTTGAAGTTCACAGATATTATTGGTTTCAGTTGCTTTCCAATGTGTCTTTTCTGAATTTCACTTACTTCAGGTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGAC</genome_strand>
        <mrna_strand>CGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATTTGAACGTTATAAAGTCGAG...............................................................................................................................................ATGGTAATCGCCGGTGATGACTGTGCTTTACCACCTCCAATAGGCATTGCTGGCCTAAAAGGGTTGGCAAGGACGCTTATCGTTCACAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGAGCTGCACCAGCTTGCGGTCTTCCCCTTGCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332269" ref_strand="+" ref_description="SGN-U332269        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tatccaccgagtttagaaggctgtgattggtccaaagaacgggtcacagacggatttctcagttgtcaaaaaaaataattattcactaacagacaatatgtgtctttgtttgttttccctctttcctgcttgcaccgtctgtggtgtggttatttcagagtgttctgcttgtacacatctgcttgcagcattgtttgctcttgggaaatccctgtaattaattgttgggtatagataggtttcattttttaaacaggggaggtagaagtctcttcatgagttaaaacacgaggttttgtgaaagacagcttgagacggcagaagttgtgtttaatctcctttgtagtcaacttaatgatatgatatgaaaaatcagctgctattgcatgttttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44000" stop="44994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44300" g_stop="44693" g_length="394"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="394" r_length="394" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="412"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U332269" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44300" e_stop="44693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</genome_strand>
        <mrna_strand>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAACGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338086" ref_strand="+" ref_description="SGN-U338086        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | leucine-rich repeat family protein / extensin family protein, similar to extensin-like protein (Lycopersicon esculentum) gi:5917664:gb:AAD55979; contains leucine-rich repeats, Pfam:PF00560; contains proline rich extensin domains, INTERPRO:IPR002965 | chr4:7758606-7761053 FORWARD | Aliases: T9E8.80, T9E8_80(evalue: 1e-20, score=97.4) genbank/nr: pherophorin-C2(evalue: 4e-23, score=112)">
      <seq>gtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaattcagccctaacagccaacttcaaattgtgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgatagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgtttttgctcctttaattctctagatttggtgcaattttattttgttgttgctcgttgtttggcacttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggtcccgtggttttttactcttcacatcgaaaggtttttcncgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccccgggggggggggccgggacccctttcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53365" stop="33980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53061" g_stop="52531" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="549" r_length="528" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52530" i_stop="48155" i_length="4376">
            <donor d_prob="0.836" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48154" g_stop="48099" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="550" r_stop="605" r_length="56" r_score="0.661"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48098" i_stop="47821" i_length="278">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.902" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47820" g_stop="47800" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="626" r_length="21" r_score="0.429"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U338086" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53061" e_stop="52531"/>
          <exon e_start="48154" e_stop="48099"/>
          <exon e_start="47820" e_stop="47800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGGATCTTTTTCTCCTTCCTATGTGGAAAAATAAAAGTCCAATTTGGACCAATCCATTTTTGCCCATAGGCCTATTCTTATTAGGCAAATATAAGAATATTTA-GGTCTTATTTTCAAATACAC-AGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGTCTTGTTATATTTGTTTGGTTGAATTACTTGTTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTTAAATCGAGAAGGGAAAGTATAGATTTGGGTATTCTTCCACTGTTATCCATCTTGTTAGGACCGGAAATAAGTAGGTGTAAACGCGGAAGGTAGCAAAGCAAACCTCGAAAGACCACGAGTAAGAAGACAATGAGAAATATACCAAAAGACACAGAGATTTAACGTGGTTCGGTCAATCGACCTACGTCCACAAAGGAGATGAGCAATCCACTATAAATATGAGAGTACAAAATACAGAGAGAAACAACCTCAACCAATTCACTCGGAATACATGAGAGGTTCACACAAGTGATAACGTATCAAGCTTGTGATCCACAAATTCTCCCTCTAACCAAAACTCTCAAAGCCCTTAAGACTACATTGTGAATGCTGATTAAGTTAGAAGGAACAACATGCCTCTATTTATAGAGTCCTAAACCTTTTTCTACAAGAAAAGGATTAGTCAATCCAAAACCTTTTCCTACAAGGAAAACCTATTTATGGTAAGAAATTTAGGGCAAATAAAACCCAACAATCACAACTCATGAATTCCCATTATCTATATCCTCTAGGAGATGCAAAGTATATTTTATGTAAACTCTAACCATCATACTAATTTGGAAAAATTCTTGCTCTAATTATTTTTAAGTAAAGAAAATTCGACTAATTAAAAGACTTAAAAGAACACGAGCTTAAAGGTATTTGATGTTTCAACATATATATACATCTAAGGGACATTGAGTAAGATATTCATTATTAATTTGATGATTAACTTAAAAAAAGGTGATTAGTTTAATAAAAAATAATTATAGAGGAAGGATGATTAGCAAAGAAATTCTATATTAAGATGTTGCATGTGTGGGAGAATGCAAATTCATATCATTGTCTCTATTCTTTCAACACACAATAAAATACATTTCTTTGTTTATTCAATAACTTAAAAGACTTTTTTTTTTTTAATCTTCCTTTGTATTGTCATTATCCATCAAACACCGAACAAAAAAGAAAGATGGAGATTTAGGTGGATTCAGAATTTAAATTCGATAGAGTACTCCTTAAATCCATTATACTTAAGAAATTAGAGTATTCAAAATTAACAACTTTCTTTTTGCGATTTTTGATTGTTTAAATATACTCTATGTTAGAAAATATTGAGGTCATTTGGAAGTATTAACTATATATGCTACAACCTCTATTTGGTTTAATTATGATATGACAATTGGATTAGTTTGAAAAGACATATCGAACCAAAATAAAACAATACGTTGCATTTGAACAGTCTCTAATTTGTGGAGGTGCACCCAATAATCATTACAGGGTTTACTGGACTATTTTAAGCTTGTGTTTCACTTCTCACCACATATCTTATTGATTGATTAGATTTCTTATGGCGATGTTTTATGACAAATTATCATTTCAGCTTCTTATCCAGAATTCCAAGTATAGGCCCATTGAAATAGAGGATTCATTAAAAAATAATGGCATTTACCAATTATAGACCTATAGGCTCTCGAGAGAATATTTTCTCCTCACTAACCAAACACCAGAAAAACACGACAACAGACTGTAAATTCCATCTCTTGACATGCCCTTATGGTCGATTCTAAGCTACAAGTCTTACGAGATATATGAGGAATTCTCTAAAATGCCAAGGTTGAATGGATTATTCAGTAACAACTCAAACTGAATATCTCTATTGTTCAAGGAACGAAAGAACGAGTCAATTTCTGGGAAGAAACGTTTACTTAGATGTGACTAGAACTACACCTCCACCCCGCGCAAGTTGGAGGAATCTCTAAATAGATCCTAAATGTCCATGATGCTGCCATTGAACCTGTCTTACTCCAATATTATAAGAACTCACTAGAAGTCCTCTACATTTCTGAGTGCTCACAAATCTCTAATAAGACAAAAGGACTCCTAATGAACATTTGGCATAAAATAACACACTAACATAACATGACTAGAACTTAATCCCCCAACTAGTTATTGGTATAAACTTAAAAGCTAATAACTTGGGCCATTTCTGAGACTGTGAAATCCTTACACAAGGTATTACGGCTTATGCTAATCTTCATTCCATCGCTCAAGAGAAACCAAGTAATACCAAAATCTCAAAACAAGAACAGGAATTAGCACATCACAATCTACACCTCAGTCAGTGGATTGACAATACAAGTCAATCTACTTGATGAATTTGCCACATGCATTTGAAGATACATCATATTGAATGGAATTTCAAATTTGAAAAGAACATCAACCAATTAAGATAACAATCCTTAAAATGACAGGTCAGAGCCCAGGTTTGATACATTCAACCAGAGTAGTGCAGGACTTAGCCATTTGGTTGATCAAATATAAGGTATTCCCTCATAGGAAGACAGAATCTGGATAATAACAAATAAAAGAATGCAAAATTTTCCATTCATAGATCATCAATACTAATTGCATAACAAATGTACCTCCTCTGCAACTTTCATAATCTGCCACTACCGTAAGTTTACGTGCTATCTGCGAGAACTACAAAGGTAAACTGAAAGAAAATCCCACAGGACAAAATCTGAAGGAGTGCTGCAATGCTTGAATTTCACTGGTTAGAAACTAACTGACAAGCCTCAGTCCAAGCAATAGTCAACTATGTACACCAGAAATGCATCATACCTATTTTAAGGACAACTGCTAGCATATCCACCATACATCTATCTGATAATGACAAACTTGTTTGTACCATGCCTTGCCCAATGTGGCTTCAGATCAATTGGATTAGAAAAGTTATATCCTTCTGAAGCCAGTTTCTCTAGTACCTTCTTAAACGCTCCCAGGCTCATCTTCCGACCTGCTATCCTTGAACCACGCCGTTTTACATTCATAGGCAAGGGATAGGAAGACAAGTTAGTGGTACAGCAAGCTGACTGCCACCCACCACAGCCCCACCTATAACACTGCTGAGCAGCCCCAGTGCATGAGCAGATTGGTATTGGAATTACTGAAATATCCATATTAATACCATTAATGACGACTTCTGCACTTTTCCTGGGAGCTCTTGCCCGTGGAGGAGATGAGGTAGACTCGTCTTTAGGAGCCCTAGTAGCTTTCTTTGCCTTCTTAGGTTTAGGGGACTTCAGCTCTTGCGATTGACCAGCTCCCCTCTTCTTAGCAAGCCCACCTATATTATCCCCTTCTTGGCAAACCTCTTCCACCAGAGGAGCAGTTTCAACTTTCACCAAGTTTGGCTGCTGGTGCATCTGCATAGACTGAGCAGAAGATGTCTCAGGCAAAAACCCAAAACCTGGAAGATAAGGGTGGTTTGCAGATAGCACATTGAGATACTTCTCTCTATAGTCTTTTTGATTAACCCATGAATCCCTCATGTACTCCATGGGCATGGGAGACTCCGAGAGCCCACAAACCCGATGATGATGAAATGCACCACCATTAGTCGACGCCATAACTGAAGGATGGTCAGGTTGGTGGGATTGTTGTTGTTGTTGGTGATTATCATGAATGTTGCGAAAATGAGGGGGCTTTTCATTCATCGAGGACACGAATTGCAGGCCCAAATGGCCCTTCGGAACCGTTGGTGTTGGCTCAAAATAACTCCAATTTCGTATATGCATTCCGCCATTTCCATCCATGGCTGCCTGAAATCAATAGCGAAAGGCTTTAAATTAAAGACCGTATTTTGCAACCCTGGGATGTTAAATTTTGCTTAAAACAGTAGAACACCAATGCCACAGCATGCAAGCATCATTGTTTTCAACCCTGCAAAAACTACAATGGATAATGTTGACCAAATCAAACCGTAGAAAAACCACAAGTAACAACATTACAAAACATCTAATCCATTGCCACAAAACACATAAACGCTCATAATGTCAACACCAAATTAAGCAATGAAAAAGATAACAACACTCACCAAATCAAAAATGCCAGGGTAGAGAAAGAAACACAAGCAATAATACACTAAAAGAAAAACAGTACCATCAGAAAATGAGCGAAAAAATTCAATCGATCGCCAATGAAATGCAAAGAAGTTGATAAAAATTTGAACTTTCATATAAAATCAGCAATGACTAAGTTTTCTAATATAGATCTTAACAAAAATTGAGAATATAATAGTTCAAAACGGAAACTGCGAGAATTTATAAATGTCACTAGAAAAACAAAAGTACTCACCGGAGGTAAAAGTCGGCTGATTAGGGTTTGGGACTGTAATCCCCTCTATGGGAATTTGGAAGGGACGCCATTATTTACCTACTAGAATTTTGTTTTTCTATAAATTATAAATTGCAAAAAAATAAAAATAAAAAGGTTAAAAAAAATAAAATACCATGAGTAAAAAAAGTAATTATAAAGAGAAAATATATACGAATTAAAGTTGCCCACTTCTAACTTTGCGAGATGTTATACCACATGGTGTAATAACAATAATATAATAAAACATTCGCATAATTTTATATAAGCAGAGTCTAGATTATATGATATGTATACAAAGGCATATCAAAATCAAGTGTCAAACTATAGTAGAAGAGTAAATAATATCAACATGAATAAGATACTAGACTACTTACTAACCTTTTCTATCATAATTTTCGAGTTTCATATCTTCCTTCCAGGATCGTGTGATCCTCTTCTAA</genome_strand>
        <mrna_strand>TTATGGACCTTTTTC-CCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACAAGAGTGTTTTTTCAGCAGCCAAAAAGAGAG--AAAGAG-AGATTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGTGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGATAGAGTTGG-ATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGTTTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATTTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAAGGTTTTTCNC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGGGGGG......................................................................................................................................................................................................................................................................................GGGGCCGGGACCCCTTTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="53191" stop="52218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52933" g_stop="52518" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="425" r_length="414" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52933" e_stop="52518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCAC-TTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</genome_strand>
        <mrna_strand>AGAGT-TTTTCAGCAG-CTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGG-ATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317269" ref_strand="+" ref_description="SGN-U317269        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | integral membrane protein, putative, contains 3 transmembrane domains; contains Pfam PF04535 : Domain of unknown function (DUF588); similar to putative ethylene responsive element binding protein (GI:22135858) (Arabidopsis thaliana) | chr2:16505564-16506549 REVERSE | Aliases: F12L6.19, F12L6_19(evalue: 2e-10, score=62.8) genbank/nr: hypothetical(evalue: 3e-52, score=21.2)">
      <seq>aaaatcaagagagtgaaaaaaaaaagatttattaaaatggaaacaccaagggctatggcaatcctccttcttagacttgtcactatgttgttgtgcggagcttcagtaccaatcatgattaccaacagcttccaacttagtggaggagaaaaaactaaatacagtgacgttaagggctacaggtacgtggtagcagcggcactagttggatctatctactcattgattcaactgccatttgcattgtattacgccgtgacagggaaaagagtttttcatggcaacttccttggccgcttggattttttcgtagataaggtgctaagttttttcctagcaagtggagttggtgttggttttggtgttagttctgagctcaaacgttacgtaaatggatttgtagacacaattgaaacaactgggatcgatacattcgaagagttgaggaagaagagtctaatattcttcgatagaggtcatttagcaactactccacttcttgctggatttggtaccatggctgtgctcaccattattacttcataccatcgcaaataaagatcgctacacttgagtgtagtgaaaaataaacgttgagtattgttgtttaattcgcgtgtgatcgttgtttaaataatttgtgtgtgttgagtttgaagatgcaataataataataatatgtgtatgtactttgtttcaatgaatatcaagaaatggaaatgtactagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="69749" stop="67906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69449" g_stop="69268" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69160" g_stop="69025" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="318" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.476" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68617" g_stop="68197" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="739" r_length="421" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U317269" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317269" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69449" e_stop="69268"/>
          <exon e_start="69160" e_stop="69025"/>
          <exon e_start="68617" e_stop="68197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAGGTTATATATTTTTTTTTTCGTTTTTACTTTTTTATTATATTAAAAAAATAAATTACTTAATTATTTTTACTTTGTATACTATATTAAAAATAAAATCGTTAATACAGGTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAGGTATATATTTCTTCGATCTATTTTTAATTTTAATTTGATTAATTTTCAAAGTTAAATTAGATAATATTAATTCGATATTTAAAAAAAATAATAGATATTCAAAAATTATACGAAAATACAGTTTTTTGCATATCAATATGATGAAAAAATACATATAATTAAAAGTTTGACTATAAAAAATGAAATTAATACAATTAAAAGTGGACAGATAGAGTACAAACTTTATAATTGAATAGGTGGTTTTAGAAAAGTCTTTGAGCTCAAGTCTTACTATTATCACCTATTAAAAAGAGTCTGTCTATAAAACGTTTAGATATGATGATCATACATATTATGCGAATTTCGTGATCAAACAACTCGAGATAACACATGTCAAGAGCTAATTGAGTGAATGTATTGCAACGCAGGTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTA</genome_strand>
        <mrna_strand>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG...........................................................................................................GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326807" ref_strand="+" ref_description="SGN-U326807        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT1G73460.1 | Symbol: None | protein kinase family protein, contains protein kinase domain Pfam:PF00069 | chr1:27623783-27628753 FORWARD | Aliases: T9L24.35, T9L24_35 (evalue: 8e-116, score=413) genbank/nr: gi|11120792|gb|AAG30972.1| hypothetical protein [Arabidopsis thaliana] (evalue: 6e-114, score=413)">
      <seq>agaagctggtggagaagtctactttaccatgccaagactgcagtcaatcacaattcagtgtttagaggctcttcagttcttgcatggcctcggactcatacattgtgatttgaagcccgaaaacatattggtgaaaagctacagtagatgtgaggtgaaggtaattgatctgggtagcagttgttttgaaacagatcatctttgttcttacgtccaatcaaggtcctaccgtgcaccagaagttattttagggcttccttatgataaaaagatagatatttggtcccttggctgcattttggcagaactttgcacgggcaatgtccttttccagaatgactctcctgccacgttacttgcaagggtacttggtatcacaggtccgattgaccaagagatgcttgtcaaaggacgagacacttacaaatatttcaccaaaaatcacatgctatatgaacgaaatcaagaaacaaacagaatggaatacttaatacccaaaaagacatccttgaggtatcgattgccaatgggagatcaaggtttcgttgattttgtggctcatcttttagaagttaacccaaagacgcggccttctgccttggaggctctaaaacatccatggctatcatatccatatgagccaatatcatcgtgagtcatgtgagatctcttggctctgaaggtgttttctattggtttgatttggattctccagtggtgatatatgaagaaagttgtccaagctgggttgtatttctagctaacacatatagagtgttatgtaacatcagattttcccttttcttcctcgtctttttttggtcgcagcaaatgcgttctgtttgtacatgatgtctactaattctttttaggtatttagtgatagcttgtgaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80810" stop="85559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81110" g_stop="81152" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81153" i_stop="81233" i_length="81">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81234" g_stop="81512" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="322" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="84031" g_stop="84174" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="466" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84828" g_stop="85259" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="897" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U326807" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326807" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81110" e_stop="81152"/>
          <exon e_start="81234" e_stop="81512"/>
          <exon e_start="84031" e_stop="84174"/>
          <exon e_start="84828" e_stop="85259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAGGTTTGTTGGATCGAAATATTCATAGATATTTGATGCTAATGGTATCTCCTGTGATGAATTTCATATATACCTGTTGTGCAGTCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAATGTAAGTTTTTTTTTCCTTTTCACACTCCTCATAATGATTATTATATCTATATATTTATCGTCAACATGATTTTTTATTAGGATATGCTGTCCATTATGCCTCCTGCATTCTGGTAGTTCTTGAGTACCTTTTCCCTTATTTTTATTATATACCCCTTCCCCGTTCTCCTAGATTGATGAATTTGACAAATGCAAAGCTGCAAACATCATTATGTTTTGGAGTTAGCGCCTAGGCCTTTGGTACAGTAAGAGCATAGCGCGTAATGTGTGAGTTAGGTGCACATTAAGTCAAATATTTTGGCAGACTAAAATCTGGAATTTAAGTTGAGACAGATAAAGAGACTGACCTATTACCCACCGAGTTTCAAACATGTGTTGTTGACTTTCGGGGATTACTCAGTTATCAGAAGAATTTATGTCCTTGTAGTTGCTATTGGTATCAAATCTTTCAGAAGCCCTAGTAATTGTTGGCAATTGGCATGTCATCTTAATATGAAATAAGTTTATTAGGAGGACACTGAGACCATTCTTCGATCTGGCTGCTTCGCGCTGTACTCCTATCTTATGTTAGAATCAGAAGAAACCAATATCTGACTGCAAGAAGAATTGTGTTTGGCTTTGATATTTCTAACCAGAGAAAATCTTCATAAGAACTAAGACCTTGTGAGAAGATTTAAAAACTTTATTTCTATTATTATCGTGAAGTAAGTAATAGCTATCTTAAACCATCTCCTCACTAGCTTGACCTTTACGTTGTCAACGGATTTTTTTTTTGGCAAATGTGGTAAAAAATATGCTAATTGGATTGTTAAAGAAATGGACCTTGGGATTAATTCAACCCTCAAAAGTCAAAACTAGCTCAAAGGGGAGTATTGTGCAAGACCATATAAGAAGATCAAATGATCCTATCCCCATCGATGTGGGATATTCAACACCCCCGCACGCCTAGGACTCAACATCTTGAGCATTGGAAAATATAAGATGGGGGGCAATATCAGATGAAACGAGAACTGGGTGGGTCCAACTTTATATTATGTTAAAGAAATGAACTTTGAGCCTAACTCAAGATCAAAAGCTAGCCCAAGAGGTGAAGTGTTTAAATAATTTACATGTCCTAAAAATGAAAGAAAATCAAACACCTAATTACAATAGGAGTAAATTAAGCTACCTACCATAATTACACATATTCTAAATATAGTCACAAAGATTCTAATAGGGAAACTTACATAAATATGCTATAATAAAAAAATATTTACCATTTATAGCAATAACTTTTTTTTTCACTTGATCGATTTAATTCATTTATAATACAATTTTAATACATATTACAAAGAACAATTTATTATTCACATATAATACAAGTTTTAATGATGGATAATACATTTATCACACATTTTAATAGACTTATAATACAATGTGACCATTTTTTACCAAACAAACACAATATATTTCAAAAACAATTATAATTCAGATATATTGCATAAATAATTCACTTTTAATACATATTACAGATTTATCACAATATTGCTATAAATGGTAATAAACAAAAAGTATCGCTAAAATCAGTAATTATCCTTTTAAAATGTATTAATTTATGTAATTTTTCTATTCTAATACTACTCTCAAGCTGGTGCATGCAAATTATAATGTATCAAGCTGGGTTCATGTATAACGTGTTCTGGGATTTGCTAATATGTCTGCAAGCTGATTATTTGACCACATGAACCTTGTACGATGTCTCTTTAGAGTACCTTCTCTCTAACAAAATGACAATCAATCTCGATGTGTTTGATCCTCTCCAAAATACCAGATTTGATGCAATATGAACTGCAGCTTCTTGATCCCTTAAATGTGTAAATGAAGGGAAGAGCAAGAGAGTTCAGAATACTTCACTATCTTGAGAGTGATGAATACTGTATTTCTTATATCTTTTTATTAATAATACTAGGACTTGGTCTATTCTCCAAAAAAAATATCAGAAGTTGGTTAGTCTGTTGAAAATAGAGGTTGGATCCTTCATGAATTTTAAGATTCGGGGGATACAGATACAGAGATTTGGCTAAAAATAATTCAAAATATCTCGAAATAGAGTCGTAAAACCTAAATTTGGAGATATTATGTGGAGAACTTTAGGTGAAGATATTGTTTTAAGTGGAGAATTCTGGAAGGGGGTAAGAAGAGACTTTAAATTTATACATAGATGGTATTCCAGTTTCTTCAATTTCACCTTAGCTTTTGCATTGTTTACAAAAATCATTGAATCTGTTCGGAGTTTCTCCTCTCGATTTTGGTCAAAGTACTCAAAATTGTTTGACCATATCGGGTACGGATCTCACAGCCATGTCGTGTCGACGTGGATGCAGCACCAAAAGTGAAGAGTCCTAGCAACTTCTCTTAAAATTGCTTAAAATGAAATTTGTTATATTTGATGTTCGTATTGAAATATCAACCAACTGTAATTTGATGTCTGTTTTGAATTTTACTAGTGAAGTTCTATAGGAATTTTCCCATTTTTGCAGGTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAAGTAAAGTTTCTTCTCCCTTTCCACTCTTTATTTCAGTTTTTTTCCTTTTGTTTTTGGGGTGATCCCCTGTTTCCCCAGATCTCATTTTTAAGATCAATTTGTCTAGTGACATTAAGATCAATGTTTTCATGTGTCAATGACTCAATCTATTTGGAGGTTATTTAACCATGGATCCAGTTTTTTAAAAAGAAAAAATCAGTTTCAAAAAGGTTATTTAACATGGATCCTTCCTTTACCTTGATTTACCCATGTCCAATGGGTATAACATGGTACGGATGTTGCATAATGATACTTAAAAATTGGCTAAAAGTTAGCAACAAAAAAAAAAACACCATAGACTTGCATCCTTAGAGGATATGTATCTGTTCCCGAGTCCATGTGCATAGTCTCGAGGACAACATATATTATTCTGTGAAAGGTCTTTGGTTTTGACAGTTCTGTATCTACTAAATATTTCCTTAAGTTGCGCTTCAACTGAGATCTAGAATCTGCAACCCAGTAAACATCATTGTTGGGGAGTCCCTTTGGATTCTTTGTTTTATATATGAATTGGTTAATTGTTTGAATGCAACTTTGGCCGGAACAAAATGAAATTGGATGTAATACAATGTCGAGATAATCAATTCCTCTTTCTTTCTTCTTTCTCTTTATAGGAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</genome_strand>
        <mrna_strand>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAG.................................................................................TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATC-AGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324673" ref_strand="+" ref_description="SGN-U324673        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, contains Pfam profile PF00226 DnaJ domain; DNAJ domain-containing protein, Homo sapiens, EMBL:AF126743 | chr5:708341-709701 REVERSE | Aliases: F15A17.60, F15A17_60(evalue: 2e-39, score=159) genbank/nr: DNAJ(evalue: 4e-39, score=164)">
      <seq>tcttctacttctttatctcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagacttgcgagttttctcatgtcaactccattagttgttggaactaccattggtgctgctgctttgggagctagatacttgataagagcgtggcaaaggttcaaagcagcaccccgagtgaggaggttttatcctgggggctttgatcgggatatgacacggcgagaagcagcattgattctcggagttagggaaagtgctgtcttgcagaagatcaaggaggctcacaggagagtaatggtagcaaatcatccagacgccggtggcagccattatcttgcttccaagatcaatgaagccaaggacgtgttgttagggaaaaccaagggagctaattctgcattttaattgaccagtgtgttctttacgctgcgaattcttaacagcttcatgatagtcaacattaaaatggatctttttctggggaaaaggagaacatattctgtttcgagttaagaggtgaatttgtatcaacagctgggtgcattactgccataaatttcatgtaatgcaaccagaaatattctttgcagattgtttacaataaaaagttgtatattcctgttaactatactctattttgaaccattactcgatctgcatgtagtatgtacgcagtgggttcatcccacctactgctcgacttgaactaactacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87642" stop="85103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87342" g_stop="87252" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86433" g_stop="86264" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="261" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85870" g_stop="85403" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="729" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U324673" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87342" e_stop="87252"/>
          <exon e_start="86433" e_stop="86264"/>
          <exon e_start="85870" e_stop="85403"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGAGCTAGAGATTATGTTAATGGATGGTATTTTAGGGAGGGTTTTCTTAGCTGCCACAAGAACCATGGTGCTATTTTAGCCTGAAAAGAGATTGATTTGCTATGCAAGGGTCTGAACTTTAGTTTCTTATTCTTATTAATCGTACTAAACCTCTGTAAGTTCTACTCGGTTGATCTATTATAGTACCAAGTGTTTTCGTGCTCTCTCTTTTCAGTCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAGGTGTGTGATAATCTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGTATTTCTTTCTATTTTTATGCTCTTTTTCAAGTTCTGAAATATGTTGGGCTCAAACAAAAAAGTCATGGCTAACTTGTTCCGGAAAGTTTGCAACTTTTAACTTTCAGATGCATACTATTCGTAGTCTTCAAGTTTTTGTTGAATTCTTGCATTCTAAGTGTAAACTACTTATTCTTTCTATAAGAAGATTGGTGCTCCGGTCACACTTTGGTTTTGAGCTCGTGATCCACAAAGCTATTAGTTGCTTATGTTCCATTTCATTCCTACTCTAGGGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTACAT</genome_strand>
        <mrna_strand>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG.........................................................................................................................................................................................................................................................................................................................................................................................................GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338059" ref_strand="+" ref_description="SGN-U338059        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cttctacttctttatctcaaatttctcagctgactgcatattgaaaatcctgaatctcatcattgttgaagacttgcgagttttctcatggtaattaatcttctacttctttcactttccttgagaatttctgttttaggattttatcatttttgctgtgatgaaaataatttgtttttttttaagtttaataagtacttcatggtaagcgcctgtatgcaatgaaatcagctctgtgagcttggctggtggatacagcaatctatgttctttttccaaattttgtctcaaatttgaaattgagctcctgtttagccatatagttttgaggttgcaaacttgaatttgagtttttgaaatttttagttttgtttagacatacatttgacctggaaaaagttgaagttttgtgtgtggatgtgccaaaaacgcaactttttggaatttatttcacgataaaatggatattcaatgataaatttttgaaatttaatcctaaaatctatatggtcaaactctagctatgggaaaaaggtcaaatttagtatttgagacagccaagttcattaatctttgttttctttttcaagtatatagtacttttaattgcataattgaacctcaaagcatattgtgttttgcgcttcaattattgttgataaatgttctgggatagtgtatatatagacctgcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="87641" stop="86345"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87341" g_stop="86645" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U338059" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U338059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87341" e_stop="86645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</genome_strand>
        <mrna_strand>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCAATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316783" ref_strand="+" ref_description="SGN-U316783        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:At3g48780.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914892.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914893.1); similar to serine palmitoyltransferase [Lotus corniculatus var. japonicus] (GB:BAC55228.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914891.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88168.1); contains InterPro domain Aminotransferase, class I and II (InterPro:IPR004839) | chr5:7981660-7985401 FORWARD | Aliases: None(evalue: 1e-68, score=254) genbank/nr: gi|4995890|emb|CAB44316.1| serine palmitoyltransferase [Solanum tuberosum](evalue: 3e-74, score=279)">
      <seq>tctgtttcatctggatcggagatcggaattctccttctagtgttcgccttcaccggcattccgatctccggcagttcacaatgatcaacattccatacttgactgccttgtccacctatttcagctatggcttgctctttgcctttggccaatttcgtgatttcttcagaaaaatattcgattggtggaacgccagtaatcttcagggatatgcacctatctgcttaggactagaagatttctatattcgtcggttgtatcttcgcattcaggattgttttggaaggccaatatgcagtcctcctgatgcttggtttgacgtggtagagcgtgtatccaatgataataacaagacactaaatcggaccacaaaagtttcaaggtgcctgaacttgggatcatataattaccttggttttgcttcttctgatgaatattgtaccccgcgtgttattgagtctttgaaaacattttccgcaagcacatgcagtacccgtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="88282" stop="89843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88582" g_stop="88787" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="206" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88903" g_stop="88968" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="272" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89103" g_stop="89191" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="361" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89401" g_stop="89543" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="504" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U316783" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88582" e_stop="88787"/>
          <exon e_start="88903" e_stop="88968"/>
          <exon e_start="89103" e_stop="89191"/>
          <exon e_start="89401" e_stop="89543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAGGTACATGTGTATTTCTATTTCTATAATGTCCGTCTCGTGAATGAATATGCGCGTCTCTGCTTTTGATTCATGCCTTTAATTTTATGGTGATCTCGTGTTTAAAATTTAATGGCAGGGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAGGTAATCATCAACACTTGTTGCAGATTTGTGATGGTTTATGCTTGAATTAGTACAATTGTGTTGATTCCGTAGCTGTCTTATGCTAAATGAGAATTTATATTTGTTCATAATATTTTTGCTTCGTTTTATAATAGGATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAAGTTAGTATACGTCATTTGCTTCGTTTTGATATTTTTCTTTGACTTTCTGAAAAATACTTCCCTCCATTTTGTGGTTCTTTGATTGTTCTGTGTAATACTGGTGATGTATGAATATTTCTCTGTTGTACAATGTAAGATATATGGTTTGTAGTAAGTGTTTTGAAACATTGTTTATAATGCTCAATCCACTCAAAATTCTTTTTATGCAGTCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</genome_strand>
        <mrna_strand>TCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG...................................................................................................................GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG......................................................................................................................................GATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA.................................................................................................................................................................................................................TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316781" ref_strand="+" ref_description="SGN-U316781        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:At3g48780.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914892.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914893.1); similar to serine palmitoyltransferase [Lotus corniculatus var. japonicus] (GB:BAC55228.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:NP_914891.1); similar to putative serine palmitoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88168.1); contains InterPro domain Aminotransferase, class I and II (InterPro:IPR004839) | chr5:7981660-7985401 FORWARD | Aliases: None(evalue: 8e-114, score=406) genbank/nr: serine(evalue: 2e-118, score=425)">
      <seq>accatggaagaagataatcgttgtggtcgagggtatatatagtatggaaggggagctttgccaactcccagagattgttgcgatatgcaagaagtacaaggcatatgtgtatctggatgaggctcatagcattggagcagttggaagaactggaaggggggtctgtgagctcttaggagttgatgctgcagatgtggagattatgatgggaacttttacaaagtcatttggatcatgtgggggttatattgcaggatcaaaggaacttattgaatatctgaagtacacttgcccagctcatctttacgccacatcaatatcacctccagctgcccaacaaataatttcttctatcaatgttatacttggtgaagatggttctagtagaggggctcagaagctagcacagatacgtgaaaatagcaactttttccgctctgaattacagaagatgggctttgaggttctgggggacaatgattctccagtcatgcccattatgctctacaatccagcaaaaatacctgctttttcacgggagtgtctcaaacgaaaagtggcagtagtgacagttgcttttccagctactcctttactactggccagagcacgaatttgcatatctgctgctcactcaagggatgatcttattaaagcgctcgaggttatcagcgaaagtggtgacctagtgggcattaaatacttccctgtcgagcccacaaagagcagctagaagcaaaccgagtcaagctggaaatgagtaagtttcagaattgattnncatcagcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89780" stop="92620"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90080" g_stop="90179" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="90359" i_length="180">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90360" g_stop="90521" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="262" r_length="162" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90522" i_stop="91249" i_length="728">
            <donor d_prob="0.980" d_score="0.98"/>
            <acceptor a_prob="0.841" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91250" g_stop="91376" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="389" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="91377" i_stop="91490" i_length="114">
            <donor d_prob="0.915" d_score="1.00"/>
            <acceptor a_prob="0.873" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91491" g_stop="91657" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="556" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91658" i_stop="91777" i_length="120">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="91778" g_stop="91885" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="664" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="91886" i_stop="92204" i_length="319">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="92205" g_stop="92332" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="665" r_stop="791" r_length="127" r_score="0.891"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U316781" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316781" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90080" e_stop="90179"/>
          <exon e_start="90360" e_stop="90521"/>
          <exon e_start="91250" e_stop="91376"/>
          <exon e_start="91491" e_stop="91657"/>
          <exon e_start="91778" e_stop="91885"/>
          <exon e_start="92205" e_stop="92332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGCATATATAGTATGGAAGGGGAGCTTTGCCAACTGCCAGAGATTGTTGCGATATGCAAGAAGTACAAGGTAATATAGTGTTTGATGTCTCTTCCTGGAACTTCTTCTTTTAATAGACATTGTCAATAATCTTTTAGCTTTCTGCCAAGCTCTTTCTTGTACGAGAGCATCTAGTTTATATGTATCTGCTTTCTGAGGTTCATGTTTGCTGATTTGCATGTGTCTAAATCTACTATCTGATTTTTGCAGGCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGACACTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTACATTGCAGGATCAAAGGTATGATTTTCACAAAAAAAAAATGCTTCTGACTAGCTTTTTCATTGGTTGAGTTAGGCTTTCCATCCTTTAATTTACTGAAGAACCGTTCGTGGATAACTTGGGATTTGTATCAAACCTCATATTTCTCAAGGATATTACCTGGTTGTATCTGCTGAATGCTGCCTCATTCTAATATGTCATTGGGTTTGAAATGAATGCTGCTCCGACCATGGTGACAACAAAATTGTTCAATTGGTAGCCTTAGTTGGTTTGCCTGATTGGTTAGCAACTGTAACTGTCATCACGTTATGTATTGCCATTTTCTAGATACTCCTTTTTACATTTTCTTTTCTTAAGCTAATATGCTCAATCTTTGCATGAAAATCACATTATTACATAATCAGGTCAAACCTTTTCCAAAGAACATAGCAACCCAGTAAACCAGAGTATATTGGCACTTGAATGAAAACCCTATTTCCAGCTGATAATAAAATCAGTCTTGTAGGAAATTATATGTACTGCAGGCTTGCGGGCATTTCATGTCCGATCTTCCAGTACAACTGATTTGATAGACTTTATCTAGACGATTTGTTTCATGGTTTCTGCCAGTAAACCGCCTGAATGATTGATTCTTTTACTTTTTCTTTTCCACTTCAGTAGAATGTGTGTTCACAGAGCTTTTTCTTGTGGTAAATATATGATGTCATCTATAAGAGATGGTTTTGACATTTGATACAACAATATAGGAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAGGTCAGAAATTTCGTCCTGCTAAATGCAACTCTACTTTTCATTATATTCTTAATGCAACTCAACACTGGTATAATGATAGTCTACTGATCATTAGAGCAACTTTGGTTCTTATAGGGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTTGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAAGTACTGTTTTCTACTATTTTTTCAGCTTCATCCAAACTAGAATTAGATCAATCTCTATTAAATGCGTACTCCCAATTTTTCTTCTTGTAATGATATTTATTTCATATCCCACTACTATAGGTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAGGTTAGCTTGTACTTGCATTTGTTTGTCATTTCAGATGATGATCATGTTTAGTTATGTCCTACTGACACTATACGAGCAACAATCCGGCACCAGAGATGCTGCTTATTGAGGAATTAACCTATTGTCATGCCATACAAAATAAAAAAGAAGATTTAAACAGATTAGAGTGGCATATTGAAATCTTGAATGAAGAAGGTCTTCTGTGTTTCAATTAGTATTTCAGTTCATGAAAATCAACACCTACCAGAAAAGAAAGGCAATGTAGCCATTACTAGTGCAAGTGAATAGCTAGTAACTTAGCAACTATTGCTTTTGTCAGGTTATCAGCGAAGTTGGTGATCTAGTGGGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGG-AATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATG</genome_strand>
        <mrna_strand>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGTATATATAGTATGGAAGGGGAGCTTTGCCAACTCCCAGAGATTGTTGCGATATGCAAGAAGTACAAG....................................................................................................................................................................................GCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGATGCTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTATATTGCAGGATCAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAG..................................................................................................................GGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTGGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAA........................................................................................................................GTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAG...............................................................................................................................................................................................................................................................................................................................GTTATCAGCGAAAGTGGTGACCTAGTGGGCATTAAATACTTCCCTGTCGAGCCC-ACAAAGAGCAGCTAGAAGCAAACCGAGTCAAGCTGGAAATGAG-TAAGTTTCAGAATTGATTNNCATCAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344126" ref_strand="-" ref_description="SGN-U344126        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | serine C-palmitoyltransferase, putative, similar to serine palmitoyltransferase from Solanum tuberosum (GI:4995890), Homo sapiens (SP:O15270), Mus musculus (SP:P97363) | chr3:18100095-18103474 FORWARD | Aliases: T21J18.50(evalue: 5e-14, score=75.1) genbank/nr: serine(evalue: 2e-15, score=85.9)">
      <seq>ggcattaaatacttccctgtcgagcccaacaaagagcagctagaagcaaaccgagtcaagctggaatgagttaagtttcagaattgattcaatcaagcatgatacgtctttaggatgagaagttttgacactttttaacttttgtatacaaagtgttgtcacgtactacatgggatagtcttatctttctcttatgcttcacgaaagggatgctgcaaggtgccaagtcgtgaatattttgttctctcaaaccaaaaatagagaaatgccatggaaaaagcaaatcttcaatattgactcacaaattgctgaaggaaactaaagagtagtagtgaaaagccaatagcaacactgtaacaagaagggcaagaagcaaacttgcctctctgtattcactgtcaagatgagaagttcaaaaacatgaacgtcaatccgaaagatctttgaatcatataattcagcttgctttgtctattgtttttgtcttttatgttatttgctagcattagtttctgaaacttgttaaactgttaaagaatggactttcagctaatatgaaggtttgcaatgcttgtatacccagttttggtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91932" stop="93121"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92232" g_stop="92822" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="629"/>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U344126" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344126" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="92232" e_stop="92822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAACTTTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAAGTGCCAAGTCGTGAATATTTTGTTCTCTCAAAACAAAAATAGAGAAATGACATGGAAAAAGTAAATCTTCAATATTGACTCACAAATTGCTGGAGGAAACTAAAGAGTAGTAGTGAAAAGACAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTG-CT-TTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACGGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACACAGTTTTAGTAG</genome_strand>
        <mrna_strand>GGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACCGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAAC-TTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAGGTGCCAAGTCGTGAATATTTTGTTCTCTCAAACCAAAAATAGAGAAATGCCATGGAAAAAGCAAATCTTCAATATTGACTCACAAATTGCTGAAGGAAACTAAAGAGTAGTAGTGAAAAGCCAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTGTCTATTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACTGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACCCAGTTTTGGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338285" ref_strand="+" ref_description="SGN-U338285        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | argonaute protein (AGO1), identical to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr1:17889766-17896236 REVERSE | Aliases: T1N15.2, T1N15_2(evalue: 8e-13, score=71.6) genbank/nr: AGO1-1(evalue: 5e-33, score=145)">
      <seq>ccttttgtgatctacacattagttttctctctctaggaatcactttctctctctaatctgatatagtagtagttgtcttctctctccgtctcatttgcgttttgtaggttacggcggtggttggttggagaagggcggaaattggtgtaccggcggtgattttgagttgctatcatggtgcggaagaggagaactgatgttcctggtggtgctgagagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagtatcaacgagggggaggacaaccccagcgccgtggtggtatagggggccgtggggcaccttctggtggctcttctaggccaccagttcccgagctgcaccaagcaactgagactccacatcagcccgtaccatatggaagaccagcagatacatactcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaaattgctgtgcaaccagtaacaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtaataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113122" stop="116085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113422" g_stop="113587" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115205" g_stop="115785" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="747" r_length="581" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U338285" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113422" e_stop="113587"/>
          <exon e_start="115205" e_stop="115785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTGTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAGGTATACATTTCTGTGATTTTGATGTATCTCTGTTAGTTTAGCATTTTAGATCTAACTGGTTCAGCGTTTTCAATTGTTGTTTATGTTCAATTTAGGGTTTTTGCTTTACGCCGATTCTCCGATTGTTCTACTTTTAGCTGAGTTCACTTGATGATCAGATCTAACTGACTGTTGATTTGGTTATGATTTTTTTTCTCATTTATGCTGTTTTCTTTTTGCCTTGTTAAACTTTTTATGTGCCTTTTCCTAGTCCTTGTTAGCTCTTTTTGTGCTGTTGCGAAGATATGATGGGTAATTTTGAATGCTGTGTGTTTGAGGGGTTTATCTCTTGTATGTTCTGTTTTTGGTGTGTTAGTTGTATAGACTACTGTTAAGAAGTGAAATGTGGATTTCTTTCCTATTTTATCTTCTGGGCTCTATTTGAGTTCATTTTAATTTGATTGACCTGTTTTGACTTGGCATTGAGTTTAGGGAAGTGAATAAACTATTGACTGTTGTGGTCTTTGAAATGAAAGATAAGTAGAATGTTGAATATGACGCTCTAAGTTGTGTTGCTGCTGTTATGTGGAGTGTGAGGTTGTCAGAACATGTTCTTTATATTTTCCTGTATATTTTCGATTAGTAAAGTTTAGTTCTTGTTAAATTCTCACCTATATTTTTAACCTTATTTGTCTTGTTATCTATGTGTCACATGGATTTATTATTCTGTTCTATTTACATGTCCGGAGCAATCTGTTCGAGCATGAATTTGTCTTTTGATTTTGGGAAGGGCAAAATGCTTCGATAAATGATCTCTGAAGCAGAAATTAAACTAATAACACCGTGTCCGTTTTTATCACAAAACCCAGTTGGAAGCATTCTTGTCATCTTGTTTGAAAGGTGTATCTTTTATGTTTTTATTCTCTCCGGGATTGAGAAATGGAAATGGTATGAGCTTTTACTGTTTTGTTGTCCTATAGTACATTCTTCTTTTGAGCATCCACGGGGTGACCTAGTGGTCAATGGTGGGTCAAAGAACCATGAGGCTTCTGGTTCAAATCCCAGCAGCAGAGGCAAAAACACTAAGAGATTTCTTCCCATATGTCCAAACCTTGGTGGACCGAGTTATCCGGTACCTGTGTTGGTAGGAGGTAGTAAGTGCCTTCAGAATTAGTATAGGTGTGCATAAGTTGGCCCGGACAATCACTACTATAATGAAAAAAACGTTCTCTTTGATTGCCAAATGTTATGCCTTCAAAGCTTGGATATGTTCGTCTGTAATGAAAAAAACATTCTCTTTGATTGCCAAATATTATGCCTTCAAAGCTTGGATGTGTTCTTCTGTGAATTGTAACTGAATCTCGTTAATCCTATTATTTAGGACTATGTTTGCATGAGATCATACTGTGGATCTTTTGTTTCTGTTTGCTATAGAAGTTGCTTGAACACGTATTGATAGAGATTTTGTTTGTGATTTATTGGGGGGGGGGGGGGTTTGGAGCCTATCAGTTGTAATCAGGGCTCATAGATTGATATCAGATATGTTTTTTGATGAGTTCATCAATTGTGTTTTTAAGGACAATGTGGCTGATCTCTACTTGAATATTTTTTAAGTGACAATTGTCTTTTTTTTTATAGTTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAAT</genome_strand>
        <mrna_strand>CCTTTTGTGATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGATACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGTAACAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338286" ref_strand="+" ref_description="SGN-U338286        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | argonaute protein (AGO1), identical to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr1:17889766-17896236 REVERSE | Aliases: T1N15.2, T1N15_2(evalue: 4e-29, score=125) genbank/nr: AGO1-1(evalue: 3e-53, score=212)">
      <seq>cttatctacacattagttttctctctctaggaatcactttctctctctaatctgatatagtagtagttgtcttctctctccgtctcatttgcgttttgtaggttacggcggtggttggttggagaagggcggaaattggtgtaccggcggtgattttgagttgctatcatggtgcggaagaggagaactgatgttcctggtggtgctgagagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagtatcaacgagggggaggacaaccccagcgccgtggtggtatagggggccgtggggcaccttctggtggctcttctaggccaccagttcccgagctgcaccaagcaactgagactccacatcagcccgtaccatatggaagaccagcagaaacatactcagaggctggctcctcatctcagccacctgaaccaatgacacatcaagttactcagcagttccagcaaattgctgtgcaaccagaagcaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggaactagatgcattgttaaagccaatcacttctttgccgagttacctgacaaagacttgcaccattatgatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="113129" stop="116159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113428" g_stop="113587" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115205" g_stop="115857" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="813" r_length="653" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U338286" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113428" e_stop="113587"/>
          <exon e_start="115205" e_stop="115857"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAGGTATACATTTCTGTGATTTTGATGTATCTCTGTTAGTTTAGCATTTTAGATCTAACTGGTTCAGCGTTTTCAATTGTTGTTTATGTTCAATTTAGGGTTTTTGCTTTACGCCGATTCTCCGATTGTTCTACTTTTAGCTGAGTTCACTTGATGATCAGATCTAACTGACTGTTGATTTGGTTATGATTTTTTTTCTCATTTATGCTGTTTTCTTTTTGCCTTGTTAAACTTTTTATGTGCCTTTTCCTAGTCCTTGTTAGCTCTTTTTGTGCTGTTGCGAAGATATGATGGGTAATTTTGAATGCTGTGTGTTTGAGGGGTTTATCTCTTGTATGTTCTGTTTTTGGTGTGTTAGTTGTATAGACTACTGTTAAGAAGTGAAATGTGGATTTCTTTCCTATTTTATCTTCTGGGCTCTATTTGAGTTCATTTTAATTTGATTGACCTGTTTTGACTTGGCATTGAGTTTAGGGAAGTGAATAAACTATTGACTGTTGTGGTCTTTGAAATGAAAGATAAGTAGAATGTTGAATATGACGCTCTAAGTTGTGTTGCTGCTGTTATGTGGAGTGTGAGGTTGTCAGAACATGTTCTTTATATTTTCCTGTATATTTTCGATTAGTAAAGTTTAGTTCTTGTTAAATTCTCACCTATATTTTTAACCTTATTTGTCTTGTTATCTATGTGTCACATGGATTTATTATTCTGTTCTATTTACATGTCCGGAGCAATCTGTTCGAGCATGAATTTGTCTTTTGATTTTGGGAAGGGCAAAATGCTTCGATAAATGATCTCTGAAGCAGAAATTAAACTAATAACACCGTGTCCGTTTTTATCACAAAACCCAGTTGGAAGCATTCTTGTCATCTTGTTTGAAAGGTGTATCTTTTATGTTTTTATTCTCTCCGGGATTGAGAAATGGAAATGGTATGAGCTTTTACTGTTTTGTTGTCCTATAGTACATTCTTCTTTTGAGCATCCACGGGGTGACCTAGTGGTCAATGGTGGGTCAAAGAACCATGAGGCTTCTGGTTCAAATCCCAGCAGCAGAGGCAAAAACACTAAGAGATTTCTTCCCATATGTCCAAACCTTGGTGGACCGAGTTATCCGGTACCTGTGTTGGTAGGAGGTAGTAAGTGCCTTCAGAATTAGTATAGGTGTGCATAAGTTGGCCCGGACAATCACTACTATAATGAAAAAAACGTTCTCTTTGATTGCCAAATGTTATGCCTTCAAAGCTTGGATATGTTCGTCTGTAATGAAAAAAACATTCTCTTTGATTGCCAAATATTATGCCTTCAAAGCTTGGATGTGTTCTTCTGTGAATTGTAACTGAATCTCGTTAATCCTATTATTTAGGACTATGTTTGCATGAGATCATACTGTGGATCTTTTGTTTCTGTTTGCTATAGAAGTTGCTTGAACACGTATTGATAGAGATTTTGTTTGTGATTTATTGGGGGGGGGGGGGGTTTGGAGCCTATCAGTTGTAATCAGGGCTCATAGATTGATATCAGATATGTTTTTTGATGAGTTCATCAATTGTGTTTTTAAGGACAATGTGGCTGATCTCTACTTGAATATTTTTTAAGTGACAATTGTCTTTTTTTTTATAGTTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT</genome_strand>
        <mrna_strand>CTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAAGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCATTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325969" ref_strand="+" ref_description="SGN-U325969        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | argonaute protein (AGO1), identical to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr1:17889766-17896236 REVERSE | Aliases: T1N15.2, T1N15_2(evalue: 2e-86, score=315) genbank/nr: AGO1-1(evalue: 6e-105, score=383)">
      <seq>agagctctgagtcccacgaaactggagggggacgaggtggtgtccaacgcccaccaccacaacagcaacaaggtggaggaagaggctcgggacctcagcgtggaggatatggtggccgtggtggtggaggagctcctcgtggtggaatagcccctcaacagtcatatggtggaccccccgagtactatcaacagggcaggggaactcagcagttccagcaaattgctgtgcaaccagaagcaggtgcatcccaagcaattccacctgtatcgagcaagtcaatgaggtttccacttcggcctggaaagggtagtaatggaactagatgcattgttaaggccaatcacttctttgccgagttacctgacaaagacttgcaccagtatgatgtttcaattacaccagaggtagcttcccgaggtgtcaaccgcgctgtcatggagcagcttgtaaagctttacagagaatcccatcttgggaagaggcttccagcctatgatggaagaaaaagtttgtacaccgcagggcccctcccttttgttcaaaaagattttaaaatcacacttcttgatgatgatgatggacccggtggtgctaggcgagaaagggagtttaaagttgtgatcaagctggctgctcgtgctgatcttcatcatttagggatgttcttacaagggaggcaggcggatgcaccccaggaggccctacaggttcttgatattgttctgcgtgagttgccaacaagtaggtattgtcccgtgggccgatcattctattcccctgatttaggacgaagacaaccactaggtgaaggtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="114953" stop="116879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115253" g_stop="115461" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="209" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115462" i_stop="115677" i_length="216">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115678" g_stop="115857" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="389" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115961" g_stop="116169" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="598" r_length="209" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="116250" g_stop="116399" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="748" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="116400" i_stop="116507" i_length="108">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="116508" g_stop="116579" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="749" r_stop="820" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U325969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115253" e_stop="115461"/>
          <exon e_start="115678" e_stop="115857"/>
          <exon e_start="115961" e_stop="116169"/>
          <exon e_start="116250" e_stop="116399"/>
          <exon e_start="116508" e_stop="116579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGATGTGAGTGCTCAACCATTGCCTTTTCTTCCAGTTATGATCTTCCTTGTATTATCTATGAGGGTCTTATCCTGATATTGATTTCATCCTTTCTAATGGCTTTCAGGTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAGGTATGCTCCTATGGATTTGAGAAGTCAAGAAACATTTTTAGCAGTATTTAATGTATGCCTTTTCTAATTTGTGTTGGCAGGCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAGGTATGGTTCTTGACTGGCTTTAATTTCTGTTTTGTCAAAAGCATTGATTACTTCTAAATTGTTGAGTTATGTATTTATCTTTTCCCTTTAATTCATTGTTACCTGCAGGTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</genome_strand>
        <mrna_strand>AGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAG........................................................................................................................................................................................................................CAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT.......................................................................................................GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG................................................................................GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAG............................................................................................................GTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317174" ref_strand="+" ref_description="SGN-U317174        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | argonaute protein (AGO1), identical to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr1:17889766-17896236 REVERSE | Aliases: T1N15.2, T1N15_2(evalue: 0, score=1110) genbank/nr: AGO1-1(evalue: 0, score=1222)">
      <seq>cgcagatgggattatccctgaatattgatatgtcttccacagcattcattgagccactgccggtcattgaatttgtgagccagcttctgaatcgggatatctcttctagaccattgtctgatgctgatcgggttaagataaagaaggccctgagaggtgtaaaggtggaggtcactcatcgtgggaatatgaggaggaagtaccgcatatctggtttgacatctcaagcaacaagagagttgactttccctgtagatgaaagaggtaccatgaaagctgttgtggaatactttcgagaaacgtatggttttgttattcagcatactcagttgccttgtcttcaagttggaaatacacaaaggccaaattatttgcctatggaggtctgcaagattgtggaggggcagaggtactccaaacgcttgaatgagaggcagataacagcacttctgaaagtgacctgccagcgtcctcaagagagagagaatgatattcttcagactgttcgtcacaatgcttattcagatgacccatatgcgagggaatttggtattaagattagcgagaagcttgctcaagttgaggctcgcattttgcctgcaccttggcttaaataccatgatacaggtcgagaaaaagactgtctaccacaagtgggccaatggaatatgatgaataagaaaatggtaaatggaggaacagtgaacaactggatctgtataaatttttctcgcaatgtgcaagacagtgttgcccggggattttgttctgagcttgcacagatgtgcatgatatcgggcatgatcttcaacccgaatcctgttttaccaccagtgagtgctcgccctgatcaagttgagagggtcctgaaaactagatttcatgatgctatgacgaagtcgcagccgaatgggagggagctcgatctgttgatcgtaatattgcccgacaataatggctccctttatggtgatctaaaacgaatttgtgaaactgatcttggcattgtctcgcaatgctgcttgacaaaacatgtgtttaagatgagcaagcagtatttagccaatgtgtcccttaagattaatgtgaaggttggaggtagaaacaccgtgcttgttgatgcgatctctaggcgaattccccttgtcagcgaccgcccaactattatttttggtgcagatgtcacccatccccaccctggggaggattctagcccgtccattgctgcggtggttgcttctcaagattggcctgagattaccaagtatgctggtctggtttctgctcaagctcataggcaagagcttatacaagatctgtacaagacttggcaagatccaactagaggaactgtgactggtggcatgataaaggaattgctgatttccttccgtcgagcgactggacagaagcctcagagaataatattctaccgagatggagttagtgagggacagttttatcaagtgcttctttttgaacttgatgcaatccgcaaggcttgtgcatctttagaacccaactatcagcccccagttacgtttgtggtggtgcaaaagcgtcaccacacaaggttgtttgccaacaaccaccgtgatcgaaatgctgtcgatcggagtgggaacattttgcctggtactgtggttgattcaaagatctgtcaccctactgagtttgatttctatctctgtagccatgctggcatacagggtactagccggccagcacattatcatgtcttgtgggacgagaaccatttttctgctgatgggctgcagtctttgactaacaacctttgctacacatatgctaggtgtactcgttctgtctccattgntcctccagcatattatgcacatttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="116315" stop="122161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="116615" g_stop="116641" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116642" i_stop="116787" i_length="146">
            <donor d_prob="0.961" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116788" g_stop="116897" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="137" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116898" i_stop="117171" i_length="274">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="117172" g_stop="117278" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="244" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="117508" g_stop="117646" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="383" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="117729" g_stop="117845" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="500" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724">
            <donor d_prob="0.807" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="118570" g_stop="118677" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="608" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="118835" g_stop="118906" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="680" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758">
            <donor d_prob="0.583" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="119665" g_stop="119787" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="803" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="119883" g_stop="120048" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="969" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="120139" g_stop="120398" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="970" r_stop="1229" r_length="260" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="120496" g_stop="120638" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1230" r_stop="1372" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="120750" g_stop="120812" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1373" r_stop="1435" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.501" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="120899" g_stop="120962" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1436" r_stop="1499" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.751" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="121107" g_stop="121242" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1500" r_stop="1635" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="121243" i_stop="121324" i_length="82">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.768" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="121325" g_stop="121398" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1636" r_stop="1709" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="121399" i_stop="121480" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="121481" g_stop="121575" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1710" r_stop="1804" r_length="95" r_score="0.989"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="121646" g_stop="121677" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1805" r_stop="1836" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156">
            <donor d_prob="0.814" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="121834" g_stop="121861" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1837" r_stop="1864" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U317174" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1864</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317174" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="116615" e_stop="116641"/>
          <exon e_start="116788" e_stop="116897"/>
          <exon e_start="117172" e_stop="117278"/>
          <exon e_start="117508" e_stop="117646"/>
          <exon e_start="117729" e_stop="117845"/>
          <exon e_start="118570" e_stop="118677"/>
          <exon e_start="118835" e_stop="118906"/>
          <exon e_start="119665" e_stop="119787"/>
          <exon e_start="119883" e_stop="120048"/>
          <exon e_start="120139" e_stop="120398"/>
          <exon e_start="120496" e_stop="120638"/>
          <exon e_start="120750" e_stop="120812"/>
          <exon e_start="120899" e_stop="120962"/>
          <exon e_start="121107" e_stop="121242"/>
          <exon e_start="121325" e_stop="121398"/>
          <exon e_start="121481" e_stop="121575"/>
          <exon e_start="121646" e_stop="121677"/>
          <exon e_start="121834" e_stop="121861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAGATGGGATTATCCCTGAATATTGGTCAGCACATTTTTCATGACTATTACATTTTGATTTCATTTCTTCATTTTGTCGAACTTGCAACTGATTATCAGTCAAGTACAGCATTTTTACCACAATGTGTGCCTGTATGGGAACATGTTTCTCATCAATGTGCCCTTCTACAGATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAGGTTGGTTTTGCATATGACTATCGTATTCGTGATAGTCTCAGAGTCTACCAGAGCCTTTTACTGTTCCCAACAATTGATTGGGACAATAAAAAGAACCCATTTATTATATATATTAAATCTTCTCCTGCAGTTCCCTTTAGATATCATTTCATCCAAATAAGGATTTATTTCCAACAGCATCTACAATGATACATTCACATATTAGGGCCATTTCCTTTTTTTCTTTTTGGCAGGTTGTTTGGTTAATTTTGTTTTTAACCCTATTGAACTGCAGATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGACGTATGTATTTCACTCAAGTCTGTAATTATGATGAAACAATTTTCTCTATGTCAAGTCTTGTCCATAATATTTTGCAGTTGGATCAACTTTTAACTTTTTCAAAAGAATATATTTTACAGTTGGATCAATTGGTGCAGTTAGTGGTGTGCCATCTGATCTTTAATGTTCTGTTGTCTGTATGTGGGATTAACTCATCGTTCTAATCACTGTGTTTTATTTGTTTGGGTAGTTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAGGTGGGTGTGTTTTATCTTTCACATAACTTGTTATTTTCCAAGTATCTTGTGTATTTTATGTGCTTACATATCTCGAGTCCAGGTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAGGTTGGATATTGCTTCCAAACTGTTATCAATACTCCTTTTCCAAATGATGGGGTTTATGGCTAGTGCTTTCTGATTTATATCTATGTTTGTTACTGGCTTTCTGTGGACCTTGAAGCAATTAACTTTCTTTCTTACGCCTTCCGCACCCAATTGATGTGATGCACTTTTGACTGGGCAAAAACTTTAAGAAAGGATGGGAGACTTTTGCTTGTGAATGAATCTTATGTCTGTATGAGTTTTCAAAGATATACTGACCTACGTCATCCTATTTTCTACCATGAACTCGAATACAATGACAATTTGGTAGTAACTTTCCAGGTTTCCATGTGCTTTCTAATTTTTAAATGTAAAACCCGTGGCGAAGAGAGTTGGGATGGGTGAGTAAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCATATTTGTTTTTATGAGTATTTAGAGGATTCGTATTTGTTTTTACGAGTATTTAGAGGTGTAGTTCATGGTGATACAAACAGAGTGTTTGAAATCTCCACAATATTAGTTCTGCTTTTAGTCAGTTAGTTTACAGTGAATTAAACAGGTTTTGTTGACTACTGCCTTTCCACCATTCATCTCTGCTGTTTGTGCATCATTGAATGATTAATGTTTTCGAGGATAAATTTCTGGCCTTTTTGCAATATTATTTGTATTTACCATGATCTGTATTTACCACAATCTAATCCTTTCTTTTGTTAGACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGGGTAAGTTATAGCTCTCCTTTTCTTTGTTGTGATCATGTCGTCGAGGATGATGGTTTCCCTTATCCTTCTGGATTTAGATGCTCTTGCTTCAATTTTGCTTTTTGGAGTGAATTAAGTTTATTTTAGGATTGTTAAGTTATGTTTATTGTTTCTGCAGCTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAGGTAACTGATATTAGCATGATTGAGATCCATGTTGCCAGTTTGACTGTCATTTCCATGCAGTTAAATGCCATCTATTGGTGTGTGTTCTCACAATGTTAGTCTTGCTTTGCCTCTAATTACTATTTTAAGGCCCCAAATGAAGTATCAGTTTAGTTGTTCATGCCTTATTTTACCTGTCTTTACTACATATGGCTTATGATAGAAAAACCGACCTCAAGGAACTTTAAAGTGTGCTTTGTTTTGTCCTTTCCTTTTTAATCTTGTAGATATCCTGCAGCAATTTCATCATATATTGATGGTCAAAAATTAGTTTGGTTGCTCTTTGTTACCCGTTCCATACACTATGTATGTTATGCTGTACCCTTAGAGATGCAGAGCTAAATTCGAGTTTTCTGATCCCACTGTTTGATCAACGTCACTAAGATCCATATACTTAGCTGCACCTTATGATAATATAGCCATAAAAGTTTATAGCAGGTTTGAACAAGGAAAGAGTTCTGGTGATAACTAGGAACTCAAAGACAATGAAAGGGAGTAGTATCAACGAAACAGTTGAGCATAAGAGTTCTTGATGGATACTTCCCGTTCATAGTTTTCTTTTTCTATGAAGTACATTTTTTTGCTCTGTTATGTGTCGATTTTCAGTCAATATTGGAGATTAAGTTAGTTTTAAATCTCAAATTAGCTGCCTTTCTGTTGAATTTCAGTCAGTGTGGGATGCGCTTTGGTTAATTACTCTACTCTATTGTTGTCGACAGAAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATGGTAATTGGACTTTAATGTTTTTCCATTTTTATTACTGTTACTTTTTTTGGTGGTCCCGCGACATAAAATTTTAAGACACTATTATATCTTTGTAGATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATGGTACAGGCCAAGACTGGTGAAATTCATGTAGTGTTTCTTTGCAAGCTCCTGGAATATGCTGCAACTGAAGTATTTTATTTCTTTTTCTAGGTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCGGTAGGTTGTTGTGTACTTCATTCTTTTGGTTTCTCTGATCCTCTTGGTAATCTATTTCTCCAAAGCAAATATAGTGCTCAATTTTCATATCTTTTAGGTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAAGTATTGTCCTTTTCCCTTTCCTTTTTTGAAAGAACATGCCCTAATGTTCGAATTTTTATTGTACTGGACTTAATTTTGCTTCTGATTCTTGCTCTTTTATCTATCACTCAGGGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCGGTATTTATGATTAACCCTTCTATGCCTGCAATTTGCAATTTTTGTTTTCCTCTTGGGCTGAAATTGGTCGTCTTTTCTCCCCTCAGAGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAGGTATTTTCTTTTCTGCTATATCTTAGTCTGCCTGTTTATTATGAACTCAGAATTTCTTTCTATTTTCTGGACGATGAGGATGGCTAGAAACAAGCGTGCCCTTTTACTTGTTAGAAGTTCTGAACTGTCTTAAATCCGATTCAGGCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTGGTGAGTGTTAATTTCAGTATCTCTGATGATTCTATAATAGCTGCAAATGATCCTAAAACCTTCTTAAAATGTAATTGTGAAGGTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAGGTAATAAGATAGATATTCTATAAAATTTGATCGTCATGTTTAAAGGACTTGGTTGTAAGTTCCCAATTTTGTGGTATTGCAGGGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACACGTAAGTTGAATGTAGCTTCCATAGTTCTTTAAATCTCCAGTATTCTGATGGACTTTTATTTTTTTTCCAGATATGCTAGGTGTACTCGTTCTGTCTCCATTGGTATGTTCACTGGCTTGTTAGTGGTTTTTCTTTTGCATCTATTTTTGATGCCCAATCTAACCCCTCTCCCCCCAATTCTTTCTTGGAATTTCCTTTCTGTGTAACCTGTTCATCATAGCATGTTAGTGAACTTGAGTTCGTTGATGTCGTTTGCAGTTCCTCCAGCATATTATGCACATTTGGC</genome_strand>
        <mrna_strand>CGCAGATGGGATTATCCCTGAATATTG..................................................................................................................................................ATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAG..................................................................................................................................................................................................................................................................................ATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGAC.....................................................................................................................................................................................................................................TTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG..................................................................................GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG.............................................................................................................................................................CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATG...............................................................................................ATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTCGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTAATATTGCCCGACAATAATGGCTCCCTTTATG..........................................................................................GTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG.................................................................................................GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA...............................................................................................................GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG......................................................................................AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG................................................................................................................................................GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTG..................................................................................GTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAG..................................................................................GGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACCATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACAC......................................................................ATATGCTAGGTGTACTCGTTCTGTCTCCATTG............................................................................................................................................................NTCCTCCAGCATATTATGCACATTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323103" ref_strand="+" ref_description="SGN-U323103        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | argonaute protein (AGO1), identical to SP:O04379 Argonaute protein (AGO1) {Arabidopsis thaliana}; contains Pfam profiles PF02171: Piwi domain, PF02170: PAZ domain | chr1:17889766-17896236 REVERSE | Aliases: T1N15.2, T1N15_2(evalue: 1e-32, score=135) genbank/nr: AGO1-1(evalue: 1e-36, score=154)">
      <seq>acatatgctaggtgtactcgttctgtctccattgttcctccagcatattatgcacatttggcagctttccgtgctcgtttttacatggaaccagagacatctgacggtggatctgtcacaagcggagctgctccgtacaaaggtggtgtaggagctgttggaaggagcacaagggcgccaggtgttggtgctgctgtaaggccccttcctgctctcaagcagaatgtcaaaagggtgatgttctattgttagaagtcctctctaaccaggctatatgatatggacatgctggagtaatttcttttcaaattgtatgtgattatctcaccttgatgtttatgaaagttcagttgtcagttaaacagtagtttattcgcaagtgatgtttgtaaattgtggcttgaacaattgttattgaagagcatggctagttatttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="121344" stop="131662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121574" g_stop="121575" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.940" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121646" g_stop="121677" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="34" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156">
            <donor d_prob="0.814" d_score="0.00"/>
            <acceptor a_prob="0.868" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121834" g_stop="122238" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="439" r_length="405" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122239" i_stop="124335" i_length="2097">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="124336" g_stop="124349" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="453" r_length="14" r_score="0.643"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U323103" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121574" e_stop="121575"/>
          <exon e_start="121646" e_stop="121677"/>
          <exon e_start="121834" e_stop="122238"/>
          <exon e_start="124336" e_stop="124349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTAAGTTGAATGTAGCTTCCATAGTTCTTTAAATCTCCAGTATTCTGATGGACTTTTATTTTTTTTCCAGATATGCTAGGTGTACTCGTTCTGTCTCCATTGGTATGTTCACTGGCTTGTTAGTGGTTTTTCTTTTGCATCTATTTTTGATGCCCAATCTAACCCCTCTCCCCCCAATTCTTTCTTGGAATTTCCTTTCTGTGTAACCTGTTCATCATAGCATGTTAGTGAACTTGAGTTCGTTGATGTCGTTTGCAGTTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAAGTGCCTTGTTATTTTCTTTTTTGGTATTTCTCTACATAACATAAAAAAAAAGGTCTTGACAATCTTGTGAACATGCGCCCTTGTGTAGATGTTAATTGAAGACAGTAAGTTTCATAGCAAGCCCATGATAACACGACTCACTCATCTGTAGCAAGTGCTCCTATAGCTGCACGGAGTAGGGGAGTGCAAGTAGATAATGATTTGCCTAGACTATGTGAAATAGTCCCGGTATTATTACTCCCTAGTTTTACTAATACATTTTATTCAATACTATTTTTATACACGATCCCTCATAGTACAACATGTGTTATTTCAGAACTTAGCGTAGAATATACACTCTACCAAACAATCAAGATGTGTTTCAGAACTTAGTGTAGTGAAAAGCAATCTTTTTATTATACTAGCAATAGGTTCAGTTAAATTCAGGTGCACAAAGGAAGATATCAAGCTTTTTAACCCTGTTCCAGAACTTGGGAACTTTCTTTCCAACTTCAGCACCAACAGTTCTCTGCTGTTCACCCTTTTTGACATTGCCAACAACAGCCTCTTCAGGCACTTTAAAGCAACCCTTCAACCCCATCTTGGACCTGCCCCTTTTCTCTTCTTCATGTTTCAGTAGCTGCTCATAATACTCATTGTTCCTTCTCTCCAATCCATATATCTGACTTTGAAGATCCTCAACTTTTCGACTAAGCATGCAAACTCTGTGATTCTCCCTTCTGTTTAGCATGCACCTTGCAAGCTCAGCTACCTTCCTCTTCATGAACAAAGACTCTGACGACAACCCCTTATTCTCCTCCATCAATGAACCCACTTTGTATCCCAATCTCGCGTTCTCATTTAACAAGATCAACCTCTCCGATTCCAACAACTCCAATAAGCTCTCCTGCAACTCTATCTTCCTTGATGACTCGTTGCAATGCTTGTCAACTTGACTAAGCTCGTGCAGTATGATTTCACAGTCTACACTTCTGATCACCAAGTCTGCAATGATCATGTCTGGTTCAAATTTGGCTTGTGTGGATGGAAATGGAGGCTGATATGATAATGAACTCTCAGCATCAGAATCAATAATCTCCGATCCGTTGTTCTCTTCCTTATCAAATTGATCATCATTATCATGATCATAATGGAAGGATGGAATAGGGAAGGAATTTTGACGATGATGGTTCTTGGCAAGTGTTTGGCAATAGCGGTCTGCCAAAGAGAGATAGTTGCCATACAATTCTTGAAGTAAGGCCAGAAGCTGTGGCCGTTTCTGGTAGTAAGCATCAGCGCGTTCTGTAAAACTGTCAGCACCATATTTATTGGGAATGTTCACGACCAACTTCTTCATCTTCGTGTCCAAATCTGAAGAAAAAAACACAATCCAAATACAATCAAATATGTGTATGATGTTGACTTGACAAGTAAAGCATTTGAAAATTTGAATTCTACACCTCTTTTAAATTGATCAAATCCAAGTTAAAAAATGGACCCTTTGGCTCTTGCCTGGACCATGAGCTACAGTGACAGATGTTGACAATGAAACTTAATACACCTATTTATTAAGTTTTATCATTTCCCATAACATTGACAACAACAACATATCCATAAGTGAGATTTAGAGCATACACATATCTTACTCCTTTATTTTCAAATATACATTGATATCTATCCATACTTGTTCCCCGCACATATACACATAGGATTAACAATAGTTTAAATTTCTCTTTTACCTTAATCAAATAATTTACAGTAAGGAGATATTGTTTTAAACCATAAATTTTAAAAGTCTTTATTTTTTCCTTAAACAACATATCAAGTCAAATAATGTCACATAAAATGGGACGAAAAGGGTGATACTAATTACTAAACTCTATCCAAACCCTCACACACACACACATGTTGACTTTGAAACATTGGATATGACCAAGTCTATGAACAATCTGCCAACCAGGCAGAAGGATTAAAGGTACTGTTAATTCTGCTGAGGAAACAGACATTATTTTCTTTCTGCAACACAACAGTATGGTGTGATACATCCCTTTTAGAGGGAGGTCCTACTATTCAAATTTCAAAAAAAGAAGCATTTTTTGTCTACTCTTTAAACCTCAGACAGAAACAGCAAA</genome_strand>
        <mrna_strand>AC......................................................................ATATGCTAGGTGTACTCGTTCTGTCTCCATTG............................................................................................................................................................TTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAAAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGCAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327423" ref_strand="+" ref_description="SGN-U327423        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative, similar to SWISS-PROT:P08578 small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE) (Chicken) | chr2:8130303-8132086 FORWARD | Aliases: MSF3.12, MSF3_12(evalue: 2e-40, score=162) genbank/nr: putative(evalue: 3e-39, score=164)">
      <seq>aaggttctacttacgcaaatagtctcaaaatttaaacttaacgacaacacgagcccaaacccgaattcatctccgggtaatgtaatgcgacatttcgattctcaaatagcaaggcttgagacttttgagtcaaactagggttttgcttgcagaagagtaactcgtcggagaaacagcatcagcagccatggctagcaccaaagtacagaggattatgacccagcccattaatctgatcttcagatttcttcagagtaaagctcgcattcagatatggctatttgagcagaaggatcagaggattgaaggacgtattattggttttgatgagtacatgaatttggttctagatgatgccgaggaagtcaatgtgaagaagaatagcagaaagcagttagggcggattcttctgaaaggagataatatcacattgatgatgaacacggggaaatgatttcctgttagctggatcttgagaagaagttcaattttctggcaaaaatcaactattggaatgtcgtctttgtggacaagaagctggatgttagatgcacatgattgagtttgaacttccatttatgttttgatatatgtatattcagcatggtatgctcagatctctttatacagtgaagaagagtagccttatgaccatttctctctatgttggtagtaacaattatatcgcaggtaaagaattgtgttaactcgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="-" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="129425" stop="126426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129125" g_stop="128897" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="128798" g_stop="128772" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="256" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="128649" g_stop="128587" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="319" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191">
            <donor d_prob="0.938" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="127395" g_stop="127317" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="398" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="127201" g_stop="127156" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="444" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="127001" g_stop="126723" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="723" r_length="279" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="-" ref_id="SGN-U327423" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129125" e_stop="128897"/>
          <exon e_start="128798" e_stop="128772"/>
          <exon e_start="128649" e_stop="128587"/>
          <exon e_start="127395" e_stop="127317"/>
          <exon e_start="127201" e_stop="127156"/>
          <exon e_start="127001" e_stop="126723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATTGTAAGTATCTTCCTTCTTTCCCATTTCTTCGTATGAGCAATTTTATTTTTGAACACTTTTTTGTGCTAAATTTGGGATTTTTTTTGTTTTTTTTACAGAATCTGATCTTCAGATTTCTTCAGAGTGTAAGTTTACTATCATACGTCTTTGTTTAAGTTTTTTTTTTTCAGTTAAACGACTAAACAAAGGCTTAATTTCCAATTACTGTTTGAGTTATAATTTATGTGATTTTTATTTTTTTTGGCAGAAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATTGTATGTTTTATAACTTGGTCTCCAGTTCAAAGAAGAAAAATAGATTAATATTTTTTGCTTATAATGAATTTCCTCCTACCAATATTTGTGAGACTTACTTTCTGGTTCATTCTCTTAGTTGTTGATTAATATTCCCTTAGCGCGTGCAGTAAATTAAGTTATTTCCCAGAGTAAATTCAGCATAGAATTTAGAGGCAATGCGTCCCATTTTCTTTTGGGTATTGATGGAATTGCTTATTGATTTCTTATATATTGAGTAAAGATCTATAGAGTTTAGTATATATCTGATTTTGAATGAGCTGTCAAATGAGCAGCCCAGGATAGAATTTTTGGCTATGAGATTTATCATTAGAATGGTTTTGAGATAATAAAGGTGCATAGTTAGGATGTATTAAGGATAAATTCCCAACAAAGGATTGAGGCAGTAAAAGAAAAAGAGAAACTTGACTAAATAATCTGGCTGTCGGAAAGCTCGGCAAGGAGAAAAGCAGTTTACGCTCATATTTCTTTAGCTTTCAACTAATTATATTTTACAAGTCATGTAGCCTTTCTTTTATTTTATTTTTTAAATTGCAATAGAAATAGTACCTAACATCTAGCTTCATTGTTGTCATGAAAACTTCCATTTCATGTAGCAAGCTCGTAAGTCATACTTGGCATATAGGTATAGATTTTAGACTATAGCTCACTGTTAGTTCCTATTGCTGAGCACACAGGCCTATGTAGTTGGACCAGACCAACTAAATGTTGTAATTATATGTAAAGTCTAGACTTAATGAACACATTTATTTTAGTTTGTTGTGTCAATGCTTGCATATACTTGAATTTGGGATAAACTGGACTGCTCAGAGTTTGAAAGGAGGAACTCTAATTCTCTAAAGAAATGTTATAATGAAATATCCACATTGTATAGCCTTGTATTAAAAGAGCTATAACATTTTCAATTGTAGTCATTTTAAGAAGTGTTGGTCAAATTATTGAGAAAGTGTGTTCTGGGGCTTTGACCTAAAACCTAGGGTTATTTTTTATCATTGATTCCCAAGTCAAATCTACATTACGGGGATTATTGAGAAATCATCTGTTTCCATGCGTGATCTTTACATTTTGTTTTGAGTATTTGTTGGCCTTCAATTACGTTACCTATATTGTTGTCAAGATTGCATATGGATAATTTGTTTTTTTTGTGTGTAGGGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAGGTGCGTAGTAAATAACTTTCAACCTAAGGCCTAGCCCTTTTCTCCCTCGGAATTACAACAAAAAATCATATTCTCTACTACTTTTGTTTCTAAGATGTCTTTGTTTCCTCTGCAGGGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACACGTATGTTTTCGACTCATTGCTTTACCGCTTTTCCCGATGCACCTGAAAACATAGTTAATCACTCCTAACAAATAGGTTATAACTGCCATTATGAAATCTCTCCCCTTTGGCAGTGTAATGCTGATATATTTTCATTTGTTTTCTCTCTATTCAGGGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTG</genome_strand>
        <mrna_strand>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT..................................................................................................AATCTGATCTTCAGATTTCTTCAGAGT..........................................................................................................................AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG...................................................................................................................GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC..........................................................................................................................................................GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331428" ref_strand="+" ref_description="SGN-U331428        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:23982531-23987588 FORWARD | Aliases: F1N19.14, F1N19_14(evalue: 1e-26, score=116) genbank/nr: unknown(evalue: 1e-25, score=119)">
      <seq>gcgaaatagagcttcttctgcggcttgtccagaagacttgaggaaaatttcgccttctgaacctaaggagagagattccactctagataccgaacctgaaagtggaatttcaaatagcaagaagactgtgttgaatggagggggtgatcactttgaggatctttcagttggagggtgtaataatatagcaaattcaggtagatccatcatagatatggataatgaggatgctatatgtaagcgtactagagcacgctactcacttgctagctttacacttgatgaacttgagacatttcttcaggagactgatgacgaggatgatcttcagaatgtcaacgatgaagaagagtacaggaagtttcttgcagctgttttacatggtggagatggaaattctggaaatatacaagataatgaaaatgttgatgatgaagatgaagacaatgatgcagattttgagcttgaaattgaggaggcattggagagtgaccttgatgaacatctgaaggatgatattgaagagtacgaggctgttggtcgaagacctaagactaggcaaaccaggcgccaaagatcttctcttgagaacaagaataagattttaggattgtcagataggccactacgccctttgttaccatatcttcccagttctccttattccgtacatggtgcaaaaggcatgatgcctccatccagtctgctgcctgcaaatgatggctttgtgaatggatttacaccccatcagataggacaattacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0074O13-E9D0X/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C06SLm0074O13.1" temp_strand="+" temp_description="C06SLm0074O13.1  AC226018.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0074O13 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="132076" stop="133442"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132376" g_stop="133142" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0074O13.1" gen_strand="+" ref_id="SGN-U331428" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0074O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132376" e_stop="133142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</genome_strand>
        <mrna_strand>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="6872" PGL_stop="9278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6872" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="0.997"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="6872" e_stop="7258" e_length="387"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="9028" e_stop="9270" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6872" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337564" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATACGAAGAAGAAAAGAAAAAATTACACCAAAAAAGAGCAAAAATGGCGTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCGGTACTTCATTTCTGTTTGCTACTTCCTTATTTCTTATAATTATGTGATATTGAGACTTAATTTTTGTTTTTGTTCTTCTTCTCTTAGATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAA</gDNA_template>
            <first_frame> Q  Y  E  E  E  K  K  K  L  H  Q  K  R  A  K  M  A  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L  G  T  S  F  L  F  A  T  S  L  F  L  I  I  M  *  Y  *  D  L  I  F  V  F  V  L  L  L  L  D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R   </first_frame>
            <second_frame>  N  T  K  K  K  R  K  N  Y  T  K  K  E  Q  K  W  R  C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  V  L  H  F  C  L  L  L  P  Y  F  L  *  L  C  D  I  E  T  *  F  L  F  L  F  F  F  S  *  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  </second_frame>
            <third_frame>   I  R  R  R  K  E  K  I  T  P  K  K  S  K  N  G  V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R  Y  F  I  S  V  C  Y  F  L  I  S  Y  N  Y  V  I  L  R  L  N  F  C  F  C  S  S  S  L  R  Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6872" stop="7135"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYEEEKKKLHQKRAKMALQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLGTSFLFATSLFLIIM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7142" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLIFVFVLLLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7000" stop="7194"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSQISFCFTNFTCPSTLSFRRPFLCFSAPRYFISVCYFLISYNYVILRLNFCFCSSSLRYLLEK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6922" e_stop="7088"/>
            <exon e_start="7176" e_stop="7258"/>
            <exon e_start="8867" e_stop="8922"/>
            <exon e_start="9028" e_stop="9278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6922" e_stop="7088" e_length="167"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="7089" i_stop="7175" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7176" e_stop="7258" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.974">
            <gDNA_intron_boundary i_start="7259" i_stop="8866" i_length="1608"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8867" e_stop="8922" e_length="56"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.975">
            <gDNA_intron_boundary i_start="8923" i_stop="9027" i_length="105"/>
          </intron>
          <exon e_serial="4" e_score="0.972">
            <gDNA_exon_boundary e_start="9028" e_stop="9278" e_length="251"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6922" stop="7088"/>
              <exon start="7176" stop="7258"/>
              <exon start="8867" stop="8922"/>
              <exon start="9028" stop="9278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322266" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGCAATGGATGATATTGACGTACGTGGTGGCAGCAGAGGCAGCAATAGCTATTCTGCTAACATTGCCATCTCCTAAACCTCTCAAATCTCGTTTTGTTTCACTAATTTCACTTGCCCTTCAACCCTCTCTTTTCGTCGTCCCTTTCTCTGTTTTTCAGCTCCTCG : ATATTTATTGGAAAAATGAGCATCGATTGATGTGTACGGGTGAGATTTGCACAGCTTCCGAGAGGGACCGCTATGAGAAATCG : ATCTACAAGGCTCAAAGAAATGTGATCCTATGTTTAGCGGCATGCCTTCTCTACTG : GTGTATCTATCGTGTTTGCAAGTACTACAAGGAGATACAGAGCATTGAAGAAGTAGAAAAGAGATACAAAGACCAGTAGCTGTCTATCTATGCACCAATCATATTATTCAAGGCTACTTGTAGCTGAAGTAACATCTACACCATGCAATGTTAACATATTATGAGTCTTGTGTTTGCTTTACAAGCCATCATTATGAATCTTTTACTACTACATATTGAAAAGAGTTTGCGAAAGAGAAGAAAGTCTTAAC</gDNA_template>
            <first_frame> V  A  M  D  D  I  D  V  R  G  G  S  R  G  S  N  S  Y  S  A  N  I  A  I  S  *  T  S  Q  I  S  F  C  F  T  N  F  T  C  P  S  T  L  S  F  R  R  P  F  L  C  F  S  A  P  R :   Y  L  L  E  K  *  A  S  I  D  V  Y  G  *  D  L  H  S  F  R  E  G  P  L  *  E  I   : D  L  Q  G  S  K  K  C  D  P  M  F  S  G  M  P  S  L  L  :  V  Y  L  S  C  L  Q  V  L  Q  G  D  T  E  H  *  R  S  R  K  E  I  Q  R  P  V  A  V  Y  L  C  T  N  H  I  I  Q  G  Y  L  *  L  K  *  H  L  H  H  A  M  L  T  Y  Y  E  S  C  V  C  F  T  S  H  H  Y  E  S  F  T  T  T  Y  *  K  E  F  A  K  E  K  K  V  L   </first_frame>
            <second_frame>  L  Q  W  M  I  L  T  Y  V  V  A  A  E  A  A  I  A  I  L  L  T  L  P  S  P  K  P  L  K  S  R  F  V  S  L  I  S  L  A  L  Q  P  S  L  F  V  V  P  F  S  V  F  Q  L  L   : D  I  Y  W  K  N  E  H  R  L  M  C  T  G  E  I  C  T  A  S  E  R  D  R  Y  E  K  S  :  I  Y  K  A  Q  R  N  V  I  L  C  L  A  A  C  L  L  Y  W :   C  I  Y  R  V  C  K  Y  Y  K  E  I  Q  S  I  E  E  V  E  K  R  Y  K  D  Q  *  L  S  I  Y  A  P  I  I  L  F  K  A  T  C  S  *  S  N  I  Y  T  M  Q  C  *  H  I  M  S  L  V  F  A  L  Q  A  I  I  M  N  L  L  L  L  H  I  E  K  S  L  R  K  R  R  K  S  *  </second_frame>
            <third_frame>   C  N  G  *  Y  *  R  T  W  W  Q  Q  R  Q  Q  *  L  F  C  *  H  C  H  L  L  N  L  S  N  L  V  L  F  H  *  F  H  L  P  F  N  P  L  F  S  S  S  L  S  L  F  F  S  S  S  :  I  F  I  G  K  M  S  I  D  *  C  V  R  V  R  F  A  Q  L  P  R  G  T  A  M  R  N  R :   S  T  R  L  K  E  M  *  S  Y  V  *  R  H  A  F  S  T   : G  V  S  I  V  F  A  S  T  T  R  R  Y  R  A  L  K  K  *  K  R  D  T  K  T  S  S  C  L  S  M  H  Q  S  Y  Y  S  R  L  L  V  A  E  V  T  S  T  P  C  N  V  N  I  L  *  V  L  C  L  L  Y  K  P  S  L  *  I  F  Y  Y  Y  I  L  K  R  V  C  E  R  E  E  S  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6923" stop="7088"/>
                    <exon start="7176" stop="7258"/>
                    <exon start="8867" stop="8922"/>
                    <exon start="9028" stop="9106"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>381</number_coding_nucleotides>
                  <number_encoded_amino_acids>127</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQWMILTYVVAAEAAIAILLTLPSPKPLKSRFVSLISLALQPSLFVVPFSVFQLLDIYWKNEHRLMCTGEICTASERDRYEKSIYKAQRNVILCLAACLLYWCIYRVCKYYKEIQSIEEVEKRYKDQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10525" PGL_stop="9274"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10525" e_stop="9274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="10525" e_stop="9274" e_length="1252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10525" stop="9274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCAGTCAGCTCGCCCTGGCTATTCCTCAAACATGAGAGGAATTCCAGTGCAATCGATTCACCAGAAACCTGCCGGAATCAAGCAGGCCTCCAAGGTTGTTCAGATTCCGGTCCATTTCGTTAGTTCGGATCCCGAGCGGTCCGTTTTGGCCTCGGCGACAAAGAAACCTGAGCCGGATAGGTCCGGTTCAGCGTTGAAGATCCAGAAGGTATTCAGAGGCTTTTTGGTGAGAAAAAGCGTGAAGAAAATCAAGTTGATACGAAAAGAGGTGGAAGATGTTGAGCGGAAGCTTTTGTGTAGAGAAACGGCGGAGTTGATTTGTAGAGATGAAAGGGAAAGGTTGCGGGTGAATGAGACGCTGATGTCTCTGCTTTTCAAGTTGGACTCCATTCGTGGAGTTGATTCCGGTGTTAGGGAGTGCAGAAAGGCTGTGATTAGAAAGGCCATCTATTTGCAAGAGAAAGTCGACTGCATTGTTGCTGCTGCAAATCAAATTGCAGCTGAAGAGGAGAATCAATCCGATGAACTCTCTGAACCAGTCAATCAGACCGGAGACATCCCCAATTCAACAGGAAAACAGGATGAAGATGGAAAATTGACAAATCAGAATGAACTTTGTCATCTGTCAGAGCAGAGTGTGGATGTAGAAACTCAAGCAGCATCAAATGATGAGAAAACACCCATAGAGGGTGAACACGATGTAGCACCGCTGAATGAGAAGCGTGGAGGATTGCAGGAGGTGAAGCAGGAAACGGACTGTCCAATGCTCGAATGTGTGGAGGAAAGTGTGGAGAGAGGTGAAGTTGGGGATTTGATCGAAGTAGTTGAGGATGTGAATGAGAATGAGAATGAGAATGAAACAAGGTCACACAAGTTTGAAGGGGGAGAAGAGAGTAGAAGAAACCGAGAGTTGTTGGAGAAAATGGTGGAGAAGAATGAGAATATGATGAGAATGATGACTGAACTGTGCCACAAAAATGAACTACAAACACGAATGCTGAATTCGCTGGCACAGAGAGTGGATCAATTAGAGAAAACTTTCTTATGTGATAGGTTGAAGACAAAGAAGAAGAAGAGGCACACTGCTTGATTCTTTCTGTAGCAAAAATGTCATAGTAGATTTTTTTTTTTTGGTGTTTCTGGGCCTGTTTCTTGTGGCTTTTATATTTCACCCTGTGATATTGGAATGTACTGATTGGTAAACAAAGATTTTGGAAAGTGAATTATAAAGAAATTTCCATATATTGTTAA</gDNA_template>
            <first_frame> P  S  Q  L  A  L  A  I  P  Q  T  *  E  E  F  Q  C  N  R  F  T  R  N  L  P  E  S  S  R  P  P  R  L  F  R  F  R  S  I  S  L  V  R  I  P  S  G  P  F  W  P  R  R  Q  R  N  L  S  R  I  G  P  V  Q  R  *  R  S  R  R  Y  S  E  A  F  W  *  E  K  A  *  R  K  S  S  *  Y  E  K  R  W  K  M  L  S  G  S  F  C  V  E  K  R  R  S  *  F  V  E  M  K  G  K  G  C  G  *  M  R  R  *  C  L  C  F  S  S  W  T  P  F  V  E  L  I  P  V  L  G  S  A  E  R  L  *  L  E  R  P  S  I  C  K  R  K  S  T  A  L  L  L  L  Q  I  K  L  Q  L  K  R  R  I  N  P  M  N  S  L  N  Q  S  I  R  P  E  T  S  P  I  Q  Q  E  N  R  M  K  M  E  N  *  Q  I  R  M  N  F  V  I  C  Q  S  R  V  W  M  *  K  L  K  Q  H  Q  M  M  R  K  H  P  *  R  V  N  T  M  *  H  R  *  M  R  S  V  E  D  C  R  R  *  S  R  K  R  T  V  Q  C  S  N  V  W  R  K  V  W  R  E  V  K  L  G  I  *  S  K  *  L  R  M  *  M  R  M  R  M  R  M  K  Q  G  H  T  S  L  K  G  E  K  R  V  E  E  T  E  S  C  W  R  K  W  W  R  R  M  R  I  *  *  E  *  *  L  N  C  A  T  K  M  N  Y  K  H  E  C  *  I  R  W  H  R  E  W  I  N  *  R  K  L  S  Y  V  I  G  *  R  Q  R  R  R  R  G  T  L  L  D  S  F  C  S  K  N  V  I  V  D  F  F  F  L  V  F  L  G  L  F  L  V  A  F  I  F  H  P  V  I  L  E  C  T  D  W  *  T  K  I  L  E  S  E  L  *  R  N  F  H  I  L  L  </first_frame>
            <second_frame>  P  V  S  S  P  W  L  F  L  K  H  E  R  N  S  S  A  I  D  S  P  E  T  C  R  N  Q  A  G  L  Q  G  C  S  D  S  G  P  F  R  *  F  G  S  R  A  V  R  F  G  L  G  D  K  E  T  *  A  G  *  V  R  F  S  V  E  D  P  E  G  I  Q  R  L  F  G  E  K  K  R  E  E  N  Q  V  D  T  K  R  G  G  R  C  *  A  E  A  F  V  *  R  N  G  G  V  D  L  *  R  *  K  G  K  V  A  G  E  *  D  A  D  V  S  A  F  Q  V  G  L  H  S  W  S  *  F  R  C  *  G  V  Q  K  G  C  D  *  K  G  H  L  F  A  R  E  S  R  L  H  C  C  C  C  K  S  N  C  S  *  R  G  E  S  I  R  *  T  L  *  T  S  Q  S  D  R  R  H  P  Q  F  N  R  K  T  G  *  R  W  K  I  D  K  S  E  *  T  L  S  S  V  R  A  E  C  G  C  R  N  S  S  S  I  K  *  *  E  N  T  H  R  G  *  T  R  C  S  T  A  E  *  E  A  W  R  I  A  G  G  E  A  G  N  G  L  S  N  A  R  M  C  G  G  K  C  G  E  R  *  S  W  G  F  D  R  S  S  *  G  C  E  *  E  *  E  *  E  *  N  K  V  T  Q  V  *  R  G  R  R  E  *  K  K  P  R  V  V  G  E  N  G  G  E  E  *  E  Y  D  E  N  D  D  *  T  V  P  Q  K  *  T  T  N  T  N  A  E  F  A  G  T  E  S  G  S  I  R  E  N  F  L  M  *  *  V  E  D  K  E  E  E  E  A  H  C  L  I  L  S  V  A  K  M  S  *  *  I  F  F  F  W  C  F  W  A  C  F  L  W  L  L  Y  F  T  L  *  Y  W  N  V  L  I  G  K  Q  R  F  W  K  V  N  Y  K  E  I  S  I  Y  C  * </second_frame>
            <third_frame>   Q  S  A  R  P  G  Y  S  S  N  M  R  G  I  P  V  Q  S  I  H  Q  K  P  A  G  I  K  Q  A  S  K  V  V  Q  I  P  V  H  F  V  S  S  D  P  E  R  S  V  L  A  S  A  T  K  K  P  E  P  D  R  S  G  S  A  L  K  I  Q  K  V  F  R  G  F  L  V  R  K  S  V  K  K  I  K  L  I  R  K  E  V  E  D  V  E  R  K  L  L  C  R  E  T  A  E  L  I  C  R  D  E  R  E  R  L  R  V  N  E  T  L  M  S  L  L  F  K  L  D  S  I  R  G  V  D  S  G  V  R  E  C  R  K  A  V  I  R  K  A  I  Y  L  Q  E  K  V  D  C  I  V  A  A  A  N  Q  I  A  A  E  E  E  N  Q  S  D  E  L  S  E  P  V  N  Q  T  G  D  I  P  N  S  T  G  K  Q  D  E  D  G  K  L  T  N  Q  N  E  L  C  H  L  S  E  Q  S  V  D  V  E  T  Q  A  A  S  N  D  E  K  T  P  I  E  G  E  H  D  V  A  P  L  N  E  K  R  G  G  L  Q  E  V  K  Q  E  T  D  C  P  M  L  E  C  V  E  E  S  V  E  R  G  E  V  G  D  L  I  E  V  V  E  D  V  N  E  N  E  N  E  N  E  T  R  S  H  K  F  E  G  G  E  E  S  R  R  N  R  E  L  L  E  K  M  V  E  K  N  E  N  M  M  R  M  M  T  E  L  C  H  K  N  E  L  Q  T  R  M  L  N  S  L  A  Q  R  V  D  Q  L  E  K  T  F  L  C  D  R  L  K  T  K  K  K  K  R  H  T  A  *  F  F  L  *  Q  K  C  H  S  R  F  F  F  F  G  V  S  G  P  V  S  C  G  F  Y  I  S  P  C  D  I  G  M  Y  *  L  V  N  K  D  F  G  K  *  I  I  K  K  F  P  Y  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10523" stop="9435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1086</number_coding_nucleotides>
                  <number_encoded_amino_acids>362</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSARPGYSSNMRGIPVQSIHQKPAGIKQASKVVQIPVHFVSSDPERSVLASATKKPEPDRSGSALKIQKVFRGFLVRKSVKKIKLIRKEVEDVERKLLCRETAELICRDERERLRVNETLMSLLFKLDSIRGVDSGVRECRKAVIRKAIYLQEKVDCIVAAANQIAAEEENQSDELSEPVNQTGDIPNSTGKQDEDGKLTNQNELCHLSEQSVDVETQAASNDEKTPIEGEHDVAPLNEKRGGLQEVKQETDCPMLECVEESVERGEVGDLIEVVEDVNENENENETRSHKFEGGEESRRNRELLEKMVEKNENMMRMMTELCHKNELQTRMLNSLAQRVDQLEKTFLCDRLKTKKKKRHTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="12226" PGL_stop="14062"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12237" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13066" e_stop="13193"/>
            <exon e_start="13283" e_stop="13411"/>
            <exon e_start="13489" e_stop="13556"/>
            <exon e_start="13638" e_stop="14062"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.983"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.977" acc_prob="0.964" e_score="0.972"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.999" acc_prob="0.968" e_score="0.984"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="12237" e_stop="12537" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.964">
            <gDNA_intron_boundary i_start="12993" i_stop="13065" i_length="73"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="13066" e_stop="13193" e_length="128"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13194" i_stop="13282" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="0.984">
            <gDNA_exon_boundary e_start="13283" e_stop="13411" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.968">
            <gDNA_intron_boundary i_start="13412" i_stop="13488" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13489" e_stop="13556" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="13557" i_stop="13637" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="13638" e_stop="14062" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12237" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13066" stop="13193"/>
              <exon start="13283" stop="13411"/>
              <exon start="13489" stop="13556"/>
              <exon start="13638" stop="13978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13500" stop="13556"/>
              <exon start="13638" stop="14062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313191" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : AAATTGCTGAAATATTCATGGTGGATACAACTCCATTTGAGGAGAAATATTTCACAACTCCTAAGGATCACATCTACGATTGGCGTGGTGTGCTCCCTAGACATGCATACATGGCTAGCGTAGTAAAA : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTTAGG : AAGTACGATGTTGATTTTTACATGAACGGACATGACCACTGTCTTGAACATATTAGCGACACTGAAAG : CCCGTTGCAATTTTTAGTAAGTGGAGCAGGTTCAAAGGCATGGAGAGGAGATATTAAAGGAATAAATAGAGATGATGTGCATTTTTTCCATGATGGACAAGGTTTCATGTCTGTTGAGTTGACACCGACAGAGGCTGAGATCAAATATTATGATGTTTTTGGTAGAATTAGACATAGGTGGAGTAGGTCCAAGAATCTTCTTCACTCTGCTATGTAAAAAAAAAAAAGAATCTTTTTTGGTTGTAGATACTAAGTTAGATGTAGAAAAGAAATTGGATTCTTTGTTTTTTGTTGTTGAGATTGGATTGTGAAAGGAAGTAAATCTCACACATTTAGGGTTCGTTTGGGTTCAATGTATTAGAATTTAGATGGAATAACATATGACAGTTTTGCTCATGTTTGATTAGTATTTTGAAACCTACATT</gDNA_template>
            <first_frame> Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  C  *  N  I  H  G  G  Y  N  S  I  *  G  E  I  F  H  N  S  *  G  S  H  L  R  L  A  W  C  A  P  *  T  C  I  H  G  *  R  S  K   : R  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  *   : E  V  R  C  *  F  L  H  E  R  T  *  P  L  S  *  T  Y  *  R  H  *  K  :  P  V  A  I  F  S  K  W  S  R  F  K  G  M  E  R  R  Y  *  R  N  K  *  R  *  C  A  F  F  P  *  W  T  R  F  H  V  C  *  V  D  T  D  R  G  *  D  Q  I  L  *  C  F  W  *  N  *  T  *  V  E  *  V  Q  E  S  S  S  L  C  Y  V  K  K  K  K  N  L  F  W  L  *  I  L  S  *  M  *  K  R  N  W  I  L  C  F  L  L  L  R  L  D  C  E  R  K  *  I  S  H  I  *  G  S  F  G  F  N  V  L  E  F  R  W  N  N  I  *  Q  F  C  S  C  L  I  S  I  L  K  P  T   </first_frame>
            <second_frame>  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : E  I  A  E  I  F  M  V  D  T  T  P  F  E  E  K  Y  F  T  T  P  K  D  H  I  Y  D  W  R  G  V  L  P  R  H  A  Y  M  A  S  V  V  K  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L  R  :  K  Y  D  V  D  F  Y  M  N  G  H  D  H  C  L  E  H  I  S  D  T  E  S :   P  L  Q  F  L  V  S  G  A  G  S  K  A  W  R  G  D  I  K  G  I  N  R  D  D  V  H  F  F  H  D  G  Q  G  F  M  S  V  E  L  T  P  T  E  A  E  I  K  Y  Y  D  V  F  G  R  I  R  H  R  W  S  R  S  K  N  L  L  H  S  A  M  *  K  K  K  R  I  F  F  G  C  R  Y  *  V  R  C  R  K  E  I  G  F  F  V  F  C  C  *  D  W  I  V  K  G  S  K  S  H  T  F  R  V  R  L  G  S  M  Y  *  N  L  D  G  I  T  Y  D  S  F  A  H  V  *  L  V  F  *  N  L  H  </second_frame>
            <third_frame>   K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  K  L  L  K  Y  S  W  W  I  Q  L  H  L  R  R  N  I  S  Q  L  L  R  I  T  S  T  I  G  V  V  C  S  L  D  M  H  T  W  L  A  *  *  K :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F  L  G :   S  T  M  L  I  F  T  *  T  D  M  T  T  V  L  N  I  L  A  T  L  K   : A  R  C  N  F  *  *  V  E  Q  V  Q  R  H  G  E  E  I  L  K  E  *  I  E  M  M  C  I  F  S  M  M  D  K  V  S  C  L  L  S  *  H  R  Q  R  L  R  S  N  I  M  M  F  L  V  E  L  D  I  G  G  V  G  P  R  I  F  F  T  L  L  C  K  K  K  K  E  S  F  L  V  V  D  T  K  L  D  V  E  K  K  L  D  S  L  F  F  V  V  E  I  G  L  *  K  E  V  N  L  T  H  L  G  F  V  W  V  Q  C  I  R  I  *  M  E  *  H  M  T  V  L  L  M  F  D  *  Y  F  E  T  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13066" stop="13193"/>
                    <exon start="13283" stop="13411"/>
                    <exon start="13489" stop="13556"/>
                    <exon start="13638" stop="13854"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1008</number_coding_nucleotides>
                  <number_encoded_amino_acids>336</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAEIAEIFMVDTTPFEEKYFTTPKDHIYDWRGVLPRHAYMASVVKELEKALSESTATWKIVLGHHAIRSAGHHGDTQILVDRFLPILRKYDVDFYMNGHDHCLEHISDTESPLQFLVSGAGSKAWRGDIKGINRDDVHFFHDGQGFMSVELTPTEAEIKYYDVFGRIRHRWSRSKNLLHSAM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="12226" e_stop="12537"/>
            <exon e_start="12622" e_stop="12778"/>
            <exon e_start="12885" e_stop="12992"/>
            <exon e_start="13283" e_stop="13408"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="0.984"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="0.975"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="0.972"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="12226" e_stop="12537" e_length="312"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12538" i_stop="12621" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="12622" e_stop="12778" e_length="157"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12779" i_stop="12884" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.972">
            <gDNA_exon_boundary e_start="12885" e_stop="12992" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="12993" i_stop="13282" i_length="290"/>
          </intron>
          <exon e_serial="4" e_score="0.952">
            <gDNA_exon_boundary e_start="13283" e_stop="13408" e_length="126"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12226" stop="12537"/>
              <exon start="12622" stop="12778"/>
              <exon start="12885" stop="12992"/>
              <exon start="13283" stop="13408"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334207" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATTCAAATACCAAAAAGAGAAAAAAAATCAAAAAAAAAAAAGGAGGTTGGGACTGAAGTATAACAATTTGTGCTTCTTTCTCAATTTCCTTTGTTGTCAAATCCTAATACAGAACCATGGCTAAATTTTCCAAAAATTCCATGGTTCTGTGCTTTTTGGTAGCCATTGTTTTTGTTATCTCTAGTGCAAGTGCATCTACTAGGCTTAAGAAATTTAATCACCCTACTAAAGGTGATGGTACTCTTAATTTCTTGGTTATTGGTGACTGGGGACGAAGGGGTACTTATAATCAATCTCACGTAGCTCGCCAC : ATGGAAAGAGTCGGAGAGAAGTTAGACATTGATTTTGTATTATCAACGGGTGACAATTTCTATGATAATGGTTTAACAGGAGTAAATGATACAAATTTCGTAGAGTCATTTACTAACATATACACAGCAAAGAGCTTACAAAAACAATGGTACAGCG : TATTAGGCAACCACGATTACAGAGGAAACGTAGAAGCACAACTCAGTCCTTACCTTAGGAAAATTGATAGCAGATGGATTTGTTTAAGGTCTTTTGTAGTTAACGCAG : GAACTCGAAAAGGCCTTGAGTGAATCGACAGCAACATGGAAGATTGTACTAGGTCACCATGCCATTAGAAGTGCAGGACATCACGGTGACACTCAGATACTTGTGGATCGTTTTCTTCCTATTCTT</gDNA_template>
            <first_frame> Y  S  N  T  K  K  R  K  K  I  K  K  K  K  G  G  W  D  *  S  I  T  I  C  A  S  F  S  I  S  F  V  V  K  S  *  Y  R  T  M  A  K  F  S  K  N  S  M  V  L  C  F  L  V  A  I  V  F  V  I  S  S  A  S  A  S  T  R  L  K  K  F  N  H  P  T  K  G  D  G  T  L  N  F  L  V  I  G  D  W  G  R  R  G  T  Y  N  Q  S  H  V  A  R  H  :  M  E  R  V  G  E  K  L  D  I  D  F  V  L  S  T  G  D  N  F  Y  D  N  G  L  T  G  V  N  D  T  N  F  V  E  S  F  T  N  I  Y  T  A  K  S  L  Q  K  Q  W  Y  S   : V  L  G  N  H  D  Y  R  G  N  V  E  A  Q  L  S  P  Y  L  R  K  I  D  S  R  W  I  C  L  R  S  F  V  V  N  A   : G  T  R  K  G  L  E  *  I  D  S  N  M  E  D  C  T  R  S  P  C  H  *  K  C  R  T  S  R  *  H  S  D  T  C  G  S  F  S  S  Y  S  </first_frame>
            <second_frame>  I  Q  I  P  K  R  E  K  K  S  K  K  K  K  E  V  G  T  E  V  *  Q  F  V  L  L  S  Q  F  P  L  L  S  N  P  N  T  E  P  W  L  N  F  P  K  I  P  W  F  C  A  F  W  *  P  L  F  L  L  S  L  V  Q  V  H  L  L  G  L  R  N  L  I  T  L  L  K  V  M  V  L  L  I  S  W  L  L  V  T  G  D  E  G  V  L  I  I  N  L  T  *  L  A  T :   W  K  E  S  E  R  S  *  T  L  I  L  Y  Y  Q  R  V  T  I  S  M  I  M  V  *  Q  E  *  M  I  Q  I  S  *  S  H  L  L  T  Y  T  Q  Q  R  A  Y  K  N  N  G  T  A  :  Y  *  A  T  T  I  T  E  E  T  *  K  H  N  S  V  L  T  L  G  K  L  I  A  D  G  F  V  *  G  L  L  *  L  T  Q  :  E  L  E  K  A  L  S  E  S  T  A  T  W  K  I  V  L  G  H  H  A  I  R  S  A  G  H  H  G  D  T  Q  I  L  V  D  R  F  L  P  I  L </second_frame>
            <third_frame>   F  K  Y  Q  K  E  K  K  N  Q  K  K  K  R  R  L  G  L  K  Y  N  N  L  C  F  F  L  N  F  L  C  C  Q  I  L  I  Q  N  H  G  *  I  F  Q  K  F  H  G  S  V  L  F  G  S  H  C  F  C  Y  L  *  C  K  C  I  Y  *  A  *  E  I  *  S  P  Y  *  R  *  W  Y  S  *  F  L  G  Y  W  *  L  G  T  K  G  Y  L  *  S  I  S  R  S  S  P   : H  G  K  S  R  R  E  V  R  H  *  F  C  I  I  N  G  *  Q  F  L  *  *  W  F  N  R  S  K  *  Y  K  F  R  R  V  I  Y  *  H  I  H  S  K  E  L  T  K  T  M  V  Q  R :   I  R  Q  P  R  L  Q  R  K  R  R  S  T  T  Q  S  L  P  *  E  N  *  *  Q  M  D  L  F  K  V  F  C  S  *  R  R :   N  S  K  R  P  *  V  N  R  Q  Q  H  G  R  L  Y  *  V  T  M  P  L  E  V  Q  D  I  T  V  T  L  R  Y  L  W  I  V  F  F  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12334" stop="12537"/>
                    <exon start="12622" stop="12778"/>
                    <exon start="12885" stop="12992"/>
                    <exon start="13283" stop="13305"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRTMAKFSKNSMVLCFLVAIVFVISSASASTRLKKFNHPTKGDGTLNFLVIGDWGRRGTYNQSHVARHMERVGEKLDIDFVLSTGDNFYDNGLTGVNDTNFVESFTNIYTAKSLQKQWYSVLGNHDYRGNVEAQLSPYLRKIDSRWICLRSFVVNAGTRKGLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15886" PGL_stop="17041"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15886" e_stop="17041"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="15886" e_stop="17041" e_length="1156"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15886" stop="17041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15928" stop="16795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318452" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGGTTGGTGGAGAGAAAGAAGAAAAGAGGGAGAAAGAAAAAGAGAAGAAAAAAAAGAAAGGGATGGTTTTTGGAGAGAATTTTTTTTTTACATCTTGTGATAGAAAAGAAAAGAATTATTGAAAGAGTTTATTCATAGGAAGATTTTACAATAGTTTAAGCACACCTATATATCTATTGAAGTTGAATTAAAAACAGAAGGATTGTGAGGTTTTTGATTATCATTTGAATTCGAAGTTGTGTAGTGGAAGGTCATCCCTTTGCTCGTTTCGTCTCTAACTCGCTGCCCCGAAGAAGGTGAAATCCTTTTTTTTTTTTTCTTTTTAGATGTTGTCATTCCACCTTGCTAACTATTTTTTTTTTGTTTTGTTTTCTTGTGTGACATCGATTCGAGTCCATTTTGGATTCCATTCTTGCATTCCTCGTTGAGCCATAAAGGCTCAAAACACTTTTCCCGAGTCAGCCAACCCCCTGAAAGGATGTACAGGTCGAAAGCAAAACCATTGGAGAGCTGCTGGAAGTAGCGGATTGCAGGCATTTGGCTGCGATTTTTGTTTTGAAGTTGTGTATCTGGTTTATACACAATATATACACTGTGATACAGGTCAAAAATCCACAGGAGGCCCAAATTCAAAATCTGAATTGATGACAGGAAAATTGCGTTTCTGGAAAGGAGTTTTCAACTTCCGAAAGTTGAAAAACAGGCTTATATACAGCCTGTATACACAGATATACAGAGATGATATACTATATATATGCTCAAAAAATATGATTGGCAGGGGAACGTACACGGATGCTTGTTTTAACTAAAATTCGGGATTAGGCAATTAATACGGACGCAGGGTGCAGCCCGTATACATTAGTATACATTATCGGGCGACGATATATAATTGTTAAACAGGTTTAAAAAATGATACAGGTACAAATATGCAGAGACGATATGCGAAATATAGGGGAAATAGCTGAAAATGCGTATATAAATAAATGCAGGGCTCAAAAGGTCCAAAATGGATGCTGATATACACCGTATACAACAGTATACATCTTTTGTATACTTTATATCTCCTTTTTCAGGAAATTGGGCTAAGGCCCTTCAGTTCCCTTTTATCAACAGGCCCAATAACCATTTGTTTTTACAGGTTTTTTTTTTAAAAAAA</gDNA_template>
            <first_frame> G  L  V  E  R  K  K  K  R  G  R  K  K  K  R  R  K  K  R  K  G  W  F  L  E  R  I  F  F  L  H  L  V  I  E  K  K  R  I  I  E  R  V  Y  S  *  E  D  F  T  I  V  *  A  H  L  Y  I  Y  *  S  *  I  K  N  R  R  I  V  R  F  L  I  I  I  *  I  R  S  C  V  V  E  G  H  P  F  A  R  F  V  S  N  S  L  P  R  R  R  *  N  P  F  F  F  F  L  F  R  C  C  H  S  T  L  L  T  I  F  F  L  F  C  F  L  V  *  H  R  F  E  S  I  L  D  S  I  L  A  F  L  V  E  P  *  R  L  K  T  L  F  P  S  Q  P  T  P  *  K  D  V  Q  V  E  S  K  T  I  G  E  L  L  E  V  A  D  C  R  H  L  A  A  I  F  V  L  K  L  C  I  W  F  I  H  N  I  Y  T  V  I  Q  V  K  N  P  Q  E  A  Q  I  Q  N  L  N  *  *  Q  E  N  C  V  S  G  K  E  F  S  T  S  E  S  *  K  T  G  L  Y  T  A  C  I  H  R  Y  T  E  M  I  Y  Y  I  Y  A  Q  K  I  *  L  A  G  E  R  T  R  M  L  V  L  T  K  I  R  D  *  A  I  N  T  D  A  G  C  S  P  Y  T  L  V  Y  I  I  G  R  R  Y  I  I  V  K  Q  V  *  K  M  I  Q  V  Q  I  C  R  D  D  M  R  N  I  G  E  I  A  E  N  A  Y  I  N  K  C  R  A  Q  K  V  Q  N  G  C  *  Y  T  P  Y  T  T  V  Y  I  F  C  I  L  Y  I  S  F  F  R  K  L  G  *  G  P  S  V  P  F  Y  Q  Q  A  Q  *  P  F  V  F  T  G  F  F  F  K  K  </first_frame>
            <second_frame>  G  W  W  R  E  R  R  K  E  G  E  R  K  R  E  E  K  K  E  R  D  G  F  W  R  E  F  F  F  Y  I  L  *  *  K  R  K  E  L  L  K  E  F  I  H  R  K  I  L  Q  *  F  K  H  T  Y  I  S  I  E  V  E  L  K  T  E  G  L  *  G  F  *  L  S  F  E  F  E  V  V  *  W  K  V  I  P  L  L  V  S  S  L  T  R  C  P  E  E  G  E  I  L  F  F  F  F  F  L  D  V  V  I  P  P  C  *  L  F  F  F  C  F  V  F  L  C  D  I  D  S  S  P  F  W  I  P  F  L  H  S  S  L  S  H  K  G  S  K  H  F  S  R  V  S  Q  P  P  E  R  M  Y  R  S  K  A  K  P  L  E  S  C  W  K  *  R  I  A  G  I  W  L  R  F  L  F  *  S  C  V  S  G  L  Y  T  I  Y  T  L  *  Y  R  S  K  I  H  R  R  P  K  F  K  I  *  I  D  D  R  K  I  A  F  L  E  R  S  F  Q  L  P  K  V  E  K  Q  A  Y  I  Q  P  V  Y  T  D  I  Q  R  *  Y  T  I  Y  M  L  K  K  Y  D  W  Q  G  N  V  H  G  C  L  F  *  L  K  F  G  I  R  Q  L  I  R  T  Q  G  A  A  R  I  H  *  Y  T  L  S  G  D  D  I  *  L  L  N  R  F  K  K  *  Y  R  Y  K  Y  A  E  T  I  C  E  I  *  G  K  *  L  K  M  R  I  *  I  N  A  G  L  K  R  S  K  M  D  A  D  I  H  R  I  Q  Q  Y  T  S  F  V  Y  F  I  S  P  F  S  G  N  W  A  K  A  L  Q  F  P  F  I  N  R  P  N  N  H  L  F  L  Q  V  F  F  L  K  K </second_frame>
            <third_frame>   V  G  G  E  K  E  E  K  R  E  K  E  K  E  K  K  K  K  K  G  M  V  F  G  E  N  F  F  F  T  S  C  D  R  K  E  K  N  Y  *  K  S  L  F  I  G  R  F  Y  N  S  L  S  T  P  I  Y  L  L  K  L  N  *  K  Q  K  D  C  E  V  F  D  Y  H  L  N  S  K  L  C  S  G  R  S  S  L  C  S  F  R  L  *  L  A  A  P  K  K  V  K  S  F  F  F  F  S  F  *  M  L  S  F  H  L  A  N  Y  F  F  F  V  L  F  S  C  V  T  S  I  R  V  H  F  G  F  H  S  C  I  P  R  *  A  I  K  A  Q  N  T  F  P  E  S  A  N  P  L  K  G  C  T  G  R  K  Q  N  H  W  R  A  A  G  S  S  G  L  Q  A  F  G  C  D  F  C  F  E  V  V  Y  L  V  Y  T  Q  Y  I  H  C  D  T  G  Q  K  S  T  G  G  P  N  S  K  S  E  L  M  T  G  K  L  R  F  W  K  G  V  F  N  F  R  K  L  K  N  R  L  I  Y  S  L  Y  T  Q  I  Y  R  D  D  I  L  Y  I  C  S  K  N  M  I  G  R  G  T  Y  T  D  A  C  F  N  *  N  S  G  L  G  N  *  Y  G  R  R  V  Q  P  V  Y  I  S  I  H  Y  R  A  T  I  Y  N  C  *  T  G  L  K  N  D  T  G  T  N  M  Q  R  R  Y  A  K  Y  R  G  N  S  *  K  C  V  Y  K  *  M  Q  G  S  K  G  P  K  W  M  L  I  Y  T  V  Y  N  S  I  H  L  L  Y  T  L  Y  L  L  F  Q  E  I  G  L  R  P  F  S  S  L  L  S  T  G  P  I  T  I  C  F  Y  R  F  F  F  *  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16314" stop="16694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>378</number_coding_nucleotides>
                  <number_encoded_amino_acids>126</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIKAQNTFPESANPLKGCTGRKQNHWRAAGSSGLQAFGCDFCFEVVYLVYTQYIHCDTGQKSTGGPNSKSELMTGKLRFWKGVFNFRKLKNRLIYSLYTQIYRDDILYICSKNMIGRGTYTDACFN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17057" PGL_stop="17679"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17057" e_stop="17679"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.953">
            <gDNA_exon_boundary e_start="17057" e_stop="17679" e_length="623"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17057" stop="17679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339705" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATAGATTATGACAGGTGGGCCAAAGCCCAATTGGATGGATTTGGGCAATCAAACCCAAGTTCAAATATTTTTCTCTCTTTATTTATTATTTGTTTGAATTAATTAGTGTTTTGGTAGAATTTTAATAATCTCCTAAAGAGTAGCCATTTTTCATTATTTTAAATTTTACTATTTTATTCACTTTTATCACCATTTAGTTTTCCTTAAATTAATTCCTCTAAACATTTCCCTTTAGAAAAAAAAAAGTAAAAAGAATGAAATACAAAATATCAAAATGAATTTTCTCTTTTACTTAGTTAAAAATTTTTATTTTAAAAGTCATTTAGTCAAATCGCCGGTCAACCGCAAGTTAGCGGGCATCCCGAGGGCCTAACACCTTCTCGAGATGTACATTGAAGTTCGAACCCTTTTCAATTGATTTTTAATCTGTTTTTTAAATCTTTTGAAGTTTTTCTTGATTTTATCAAAAATCAAGTGGCGACTCCAATTTTGAAGGTCGGTTTTTCTTAAACAATAAGATTAATTGATTTTTCGAAACCTAGTCAATTTTTTCTCATTTCTCCCATTAAACATAAACAGTAGTATTTTTTTAAGTGAAACATCAAGTATTACTTTGCTCA</gDNA_template>
            <first_frame> *  I  D  Y  D  R  W  A  K  A  Q  L  D  G  F  G  Q  S  N  P  S  S  N  I  F  L  S  L  F  I  I  C  L  N  *  L  V  F  W  *  N  F  N  N  L  L  K  S  S  H  F  S  L  F  *  I  L  L  F  Y  S  L  L  S  P  F  S  F  P  *  I  N  S  S  K  H  F  P  L  E  K  K  K  *  K  E  *  N  T  K  Y  Q  N  E  F  S  L  L  L  S  *  K  F  L  F  *  K  S  F  S  Q  I  A  G  Q  P  Q  V  S  G  H  P  E  G  L  T  P  S  R  D  V  H  *  S  S  N  P  F  Q  L  I  F  N  L  F  F  K  S  F  E  V  F  L  D  F  I  K  N  Q  V  A  T  P  I  L  K  V  G  F  S  *  T  I  R  L  I  D  F  S  K  P  S  Q  F  F  L  I  S  P  I  K  H  K  Q  *  Y  F  F  K  *  N  I  K  Y  Y  F  A   </first_frame>
            <second_frame>  K  *  I  M  T  G  G  P  K  P  N  W  M  D  L  G  N  Q  T  Q  V  Q  I  F  F  S  L  Y  L  L  F  V  *  I  N  *  C  F  G  R  I  L  I  I  S  *  R  V  A  I  F  H  Y  F  K  F  Y  Y  F  I  H  F  Y  H  H  L  V  F  L  K  L  I  P  L  N  I  S  L  *  K  K  K  S  K  K  N  E  I  Q  N  I  K  M  N  F  L  F  Y  L  V  K  N  F  Y  F  K  S  H  L  V  K  S  P  V  N  R  K  L  A  G  I  P  R  A  *  H  L  L  E  M  Y  I  E  V  R  T  L  F  N  *  F  L  I  C  F  L  N  L  L  K  F  F  L  I  L  S  K  I  K  W  R  L  Q  F  *  R  S  V  F  L  K  Q  *  D  *  L  I  F  R  N  L  V  N  F  F  S  F  L  P  L  N  I  N  S  S  I  F  L  S  E  T  S  S  I  T  L  L  </second_frame>
            <third_frame>   N  R  L  *  Q  V  G  Q  S  P  I  G  W  I  W  A  I  K  P  K  F  K  Y  F  S  L  F  I  Y  Y  L  F  E  L  I  S  V  L  V  E  F  *  *  S  P  K  E  *  P  F  F  I  I  L  N  F  T  I  L  F  T  F  I  T  I  *  F  S  L  N  *  F  L  *  T  F  P  F  R  K  K  K  V  K  R  M  K  Y  K  I  S  K  *  I  F  S  F  T  *  L  K  I  F  I  L  K  V  I  *  S  N  R  R  S  T  A  S  *  R  A  S  R  G  P  N  T  F  S  R  C  T  L  K  F  E  P  F  S  I  D  F  *  S  V  F  *  I  F  *  S  F  S  *  F  Y  Q  K  S  S  G  D  S  N  F  E  G  R  F  F  L  N  N  K  I  N  *  F  F  E  T  *  S  I  F  S  H  F  S  H  *  T  *  T  V  V  F  F  *  V  K  H  Q  V  L  L  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="29922" PGL_stop="31136"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29922" e_stop="30336"/>
            <exon e_start="31113" e_stop="31136"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.141" e_score="0.990"/>
          <exon-only e_score="0.667"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="29922" e_stop="30336" e_length="415"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.141">
            <gDNA_intron_boundary i_start="30337" i_stop="31112" i_length="776"/>
          </intron>
          <exon e_serial="2" e_score="0.667">
            <gDNA_exon_boundary e_start="31113" e_stop="31136" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29922" stop="30336"/>
              <exon start="31113" stop="31136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330662" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCCTTGTTGAACAGTTTTTACCATTCGTGAAGCAGTTCTAAACTTCTAGTAATGGCAATAGTGATTGTTCAATAACAACATACCCAGTGCAATTCTACAAGTGGGGTCTGGAGAGGGTAGAGCGTGTACAAACCTTACCCCTACCTTAGAAGATAGAGAGATTGTTTCTCATAGACCCTTGGCTCAAGAAGAAGCATATCAAAGCAGTTCGGGAATAGTGATTATTGTGTATGGTAAATACACTAGAACATCAGAAATATTCAAACAAAACCACCAGCTAGCAGAACGCAGTTTACTGGATAAAGGAACAGTGAAAAAAAGAAATTAAGAGCCTAGAATTTGGGTCCGAAATGATGAGGAAAACTTGTATACTTACTAAAGTTTCGTGTTATAGGTTTCTCTTTTGTCGCTACA : AACACTTAAAAAATAAAGCGAAAA</gDNA_template>
            <first_frame> S  L  V  E  Q  F  L  P  F  V  K  Q  F  *  T  S  S  N  G  N  S  D  C  S  I  T  T  Y  P  V  Q  F  Y  K  W  G  L  E  R  V  E  R  V  Q  T  L  P  L  P  *  K  I  E  R  L  F  L  I  D  P  W  L  K  K  K  H  I  K  A  V  R  E  *  *  L  L  C  M  V  N  T  L  E  H  Q  K  Y  S  N  K  T  T  S  *  Q  N  A  V  Y  W  I  K  E  Q  *  K  K  E  I  K  S  L  E  F  G  S  E  M  M  R  K  T  C  I  L  T  K  V  S  C  Y  R  F  L  F  C  R  Y   : K  H  L  K  N  K  A  K  </first_frame>
            <second_frame>  A  L  L  N  S  F  Y  H  S  *  S  S  S  K  L  L  V  M  A  I  V  I  V  Q  *  Q  H  T  Q  C  N  S  T  S  G  V  W  R  G  *  S  V  Y  K  P  Y  P  Y  L  R  R  *  R  D  C  F  S  *  T  L  G  S  R  R  S  I  S  K  Q  F  G  N  S  D  Y  C  V  W  *  I  H  *  N  I  R  N  I  Q  T  K  P  P  A  S  R  T  Q  F  T  G  *  R  N  S  E  K  K  K  L  R  A  *  N  L  G  P  K  *  *  G  K  L  V  Y  L  L  K  F  R  V  I  G  F  S  F  V  A  T  :  N  T  *  K  I  K  R  K </second_frame>
            <third_frame>   P  C  *  T  V  F  T  I  R  E  A  V  L  N  F  *  *  W  Q  *  *  L  F  N  N  N  I  P  S  A  I  L  Q  V  G  S  G  E  G  R  A  C  T  N  L  T  P  T  L  E  D  R  E  I  V  S  H  R  P  L  A  Q  E  E  A  Y  Q  S  S  S  G  I  V  I  I  V  Y  G  K  Y  T  R  T  S  E  I  F  K  Q  N  H  Q  L  A  E  R  S  L  L  D  K  G  T  V  K  K  R  N  *  E  P  R  I  W  V  R  N  D  E  E  N  L  Y  T  Y  *  S  F  V  L  *  V  S  L  L  S  L  Q :   T  L  K  K  *  S  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29987" stop="30250"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFNNNIPSAILQVGSGEGRACTNLTPTLEDREIVSHRPLAQEEAYQSSSGIVIIVYGKYTRTSEIFKQNHQLAERSLLDKGTVKKRN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="36473" PGL_stop="46962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36473" e_stop="36582"/>
            <exon e_start="36672" e_stop="36723"/>
            <exon e_start="38256" e_stop="38329"/>
            <exon e_start="38440" e_stop="38503"/>
            <exon e_start="39260" e_stop="39372"/>
            <exon e_start="39470" e_stop="39517"/>
            <exon e_start="39769" e_stop="39840"/>
            <exon e_start="39984" e_stop="40073"/>
            <exon e_start="41120" e_stop="41293"/>
            <exon e_start="41646" e_stop="41729"/>
            <exon e_start="42520" e_stop="42575"/>
            <exon e_start="42914" e_stop="43044"/>
            <exon e_start="43113" e_stop="43205"/>
            <exon e_start="43498" e_stop="43562"/>
            <exon e_start="43794" e_stop="43937"/>
            <exon e_start="44022" e_stop="44065"/>
            <exon e_start="44923" e_stop="45006"/>
            <exon e_start="45107" e_stop="45180"/>
            <exon e_start="45270" e_stop="45382"/>
            <exon e_start="45472" e_stop="45567"/>
            <exon e_start="46526" e_stop="46962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.210" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.709" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.785" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36473" e_stop="36582" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36583" i_stop="36671" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36672" e_stop="36723" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="36724" i_stop="38255" i_length="1532"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38256" e_stop="38329" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.985">
            <gDNA_intron_boundary i_start="38330" i_stop="38439" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="38440" e_stop="38503" e_length="64"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="38504" i_stop="39259" i_length="756"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39260" e_stop="39372" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.993">
            <gDNA_intron_boundary i_start="39373" i_stop="39469" i_length="97"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="39470" e_stop="39517" e_length="48"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="39518" i_stop="39768" i_length="251"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39769" e_stop="39840" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39841" i_stop="39983" i_length="143"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39984" e_stop="40073" e_length="90"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.997">
            <gDNA_intron_boundary i_start="40074" i_stop="41119" i_length="1046"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="41120" e_stop="41293" e_length="174"/>
          </exon>
          <intron i_serial="9" don_prob="0.210" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41294" i_stop="41645" i_length="352"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41646" e_stop="41729" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.922" acc_prob="0.709">
            <gDNA_intron_boundary i_start="41730" i_stop="42519" i_length="790"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="42520" e_stop="42575" e_length="56"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42576" i_stop="42913" i_length="338"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42914" e_stop="43044" e_length="131"/>
          </exon>
          <intron i_serial="12" don_prob="0.818" acc_prob="0.694">
            <gDNA_intron_boundary i_start="43045" i_stop="43112" i_length="68"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="43113" e_stop="43205" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43206" i_stop="43497" i_length="292"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="43498" e_stop="43562" e_length="65"/>
          </exon>
          <intron i_serial="14" don_prob="0.983" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43563" i_stop="43793" i_length="231"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="43794" e_stop="43937" e_length="144"/>
          </exon>
          <intron i_serial="15" don_prob="0.920" acc_prob="0.996">
            <gDNA_intron_boundary i_start="43938" i_stop="44021" i_length="84"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="44022" e_stop="44065" e_length="44"/>
          </exon>
          <intron i_serial="16" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44066" i_stop="44922" i_length="857"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="44923" e_stop="45006" e_length="84"/>
          </exon>
          <intron i_serial="17" don_prob="0.925" acc_prob="0.979">
            <gDNA_intron_boundary i_start="45007" i_stop="45106" i_length="100"/>
          </intron>
          <exon e_serial="18" e_score="1.000">
            <gDNA_exon_boundary e_start="45107" e_stop="45180" e_length="74"/>
          </exon>
          <intron i_serial="18" don_prob="0.924" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45181" i_stop="45269" i_length="89"/>
          </intron>
          <exon e_serial="19" e_score="1.000">
            <gDNA_exon_boundary e_start="45270" e_stop="45382" e_length="113"/>
          </exon>
          <intron i_serial="19" don_prob="0.992" acc_prob="0.961">
            <gDNA_intron_boundary i_start="45383" i_stop="45471" i_length="89"/>
          </intron>
          <exon e_serial="20" e_score="1.000">
            <gDNA_exon_boundary e_start="45472" e_stop="45567" e_length="96"/>
          </exon>
          <intron i_serial="20" don_prob="0.940" acc_prob="0.785">
            <gDNA_intron_boundary i_start="45568" i_stop="46525" i_length="958"/>
          </intron>
          <exon e_serial="21" e_score="0.991">
            <gDNA_exon_boundary e_start="46526" e_stop="46962" e_length="437"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36473" stop="36582"/>
              <exon start="36672" stop="36723"/>
              <exon start="38256" stop="38329"/>
              <exon start="38440" stop="38503"/>
              <exon start="39260" stop="39372"/>
              <exon start="39470" stop="39517"/>
              <exon start="39769" stop="39840"/>
              <exon start="39984" stop="40073"/>
              <exon start="41120" stop="41293"/>
              <exon start="41646" stop="41729"/>
              <exon start="42520" stop="42575"/>
              <exon start="42914" stop="43044"/>
              <exon start="43113" stop="43205"/>
              <exon start="43498" stop="43562"/>
              <exon start="43794" stop="43937"/>
              <exon start="44022" stop="44065"/>
              <exon start="44923" stop="45006"/>
              <exon start="45107" stop="45180"/>
              <exon start="45270" stop="45382"/>
              <exon start="45472" stop="45567"/>
              <exon start="46526" stop="46962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39784" stop="39840"/>
              <exon start="39984" stop="40073"/>
              <exon start="41120" stop="41161"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335831" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTATAAATCTTTTTTTTCCCCTTCTCTCTCTTTTTGTGTTTGTTCAGACTTCGGACAAAGCATTCAACAATTGAAGTCTACTCTCCCCACACCTACAAAGCCCTCAG : CACAATTATCCGATGGATTTTCAGAGCAAAAAACTCATCAACGACCCCAATG : ATGTTGTGACAGAGTTCATTGAGGGACTTATTGAGAATTATCCAGGGTTGCAGTATCTGGATGGTTTCCCAGAG : GTTAAGGTCGTCTTGCGTGCTGATGTTTCTGGTGCAAAATATGACAAAGTTGCCATCATATCAG : GTGGTGGAAGTGGCCATGAGCCTGCTCATGCTGGATTTGTTGGAGAAGGGATGCTGACTGCAGCTATCTGTGGGGACGTTTTTGCCTCTCCAAATGTTGATTCAATTCTTGCG : GGCATACGAGCTGTCACAGGTCCCATGGGGTGCCTTCTTATTGTCAAG : AACTATACTGGTGATCGACTGAATTTTGGTTTGGCTGCTGAACAAGCAAAATCTGAAGGTTATAAAGTCGAG : ATGGTAATCGTCGGTGATGACTGTGCTTTACCACCTCCAAGAGGCATTGCTGGCCGAAGAGGGTTGGCAGGGACGCTTCTTGTTCACAAG : GTTGCCGGAGCTGCAGCAGCTTGTGGTCTTCCCCTTGCTGACGTTGCAGCTGAAGCCAAACGTGCATCAGAAATGGTTGGGACAATGGGCGTTGCGTTATCTGTTTGCACGTTGCCAGGACAGGTGACTTCAGACCGTTTAGGCCCAGGGAAGATGGAGCTTGGTCTTGGAATA : CATGGGGAACCAGGAGCTGCTGTAGCTGACCTTCAACCAGTAGATGTGGTGGTTTCTCATGTTCTGAAGGAGATTTTGTCACCG : GAGACCAACTACGTTCCAATCACGCGTGGGAGTAGAGTCGTGCTCCTGATTAATGG : ATTAGGAGCAACACCATTGATGGAATTGATGATTATAGCTGGCAAGGCTGTCCCAGAATTGCAGCTTGAACATGGTCTAGCTGTTGATAGAGTCTATACAGGGTCATTTATGACGTCACTTGATATGGCAG : GCTTTTCAATTTCGGTAATGAAGGCTGATCAAGCAATTTTAGATCGTTTAGATGCTCCAACTAAAGCTCCAAATTGGCCTGTTGGTGCTGAAG : GCAACCGGCCTCCTGCAAAGATTCCTGTTCCACTTCCGCCATCACATTCTATCAAGATTGAAAAG : ACATTGAGTCGGCCTGAAAAACTGAGCCCTCAGGGTCATATCCTTGAGACAGCTATTGAAGCAGCAGCTACTGAAGTTGTAAATCTCAGGGATAATTTGAATGAGTGGGACAATAAAGTTGGTGATGGCGATTGTGGTTCAACT : ATGTTCAGAGGTGCTGTGGCTATACTTGAAGACATGAAGAAGTA : CTATCCGTTGAATGACCCTGCAGAAACAGTCAATGAAATTGGAGCCTCCATTGGAAGAGTAATGGGGGGAACTAGCGGTATCTT : ATACAGTATATTCTGTAAGGCAGCATATGCGAAGTTGAAAGAAAATGCTGAGTCGGTTGTCACAGCTATTCACT : GGGCTGATGCACTTGAAGCTGCTATCGCTGCTGTTAGTAAATATGGAGGAGCTAGTGCTGGTTATCGTACCCTTTTAGATGCTCTTATACCAGCATTGTCAGCTCTTAAAGAG : AGGTTGAATGCTGGGGACGACCCTGCGGATGCTTTCATTATTTCTGCTGAGGCAGCATCTGCTGGAGCCGAGTCAACCAAGCACATGCAGGCGCAG : GCTGGCCGTTCAACCTATGTACCCGGAGATATTCTTGCATCAGTTCCTGACCCAGGTGCCATGGCTGCAGCTGCGTGGTACAGAGCAGCTGCGTTAGCTGTGAAGGAGAAGTATAATACAGCATAAGCATATTTAATCGGCCATTCCTATTACTTCCTGCAGGAATGTTTTCTCTTTCTCGAGGAAGAAATTAACCCAACAATTTTTTGCTCGTAAACCTTATGAGGAGTTAGCTTTCCGCTTATGCAGTCCTGCATAAAGCCGAGAGAGTGTAGAAAATGTATGTTACAGTCCTTTTATACAGTGTTCTAAGTGAGGGAAAAAACAAACACTGCCATGTAGAATGGTAATCTGTGAAGGTGGTTGTAAACTTTATTGTAACAATGGATTTTCTTATTCTGCTACTTTTAGCATCTCTTCGCGCACCTTTACAACGC</gDNA_template>
            <first_frame> P  L  *  I  F  F  F  P  F  S  L  F  L  C  L  F  R  L  R  T  K  H  S  T  I  E  V  Y  S  P  H  T  Y  K  A  L  S :   T  I  I  R  W  I  F  R  A  K  N  S  S  T  T  P  M  :  M  L  *  Q  S  S  L  R  D  L  L  R  I  I  Q  G  C  S  I  W  M  V  S  Q  R :   L  R  S  S  C  V  L  M  F  L  V  Q  N  M  T  K  L  P  S  Y  Q  :  V  V  E  V  A  M  S  L  L  M  L  D  L  L  E  K  G  C  *  L  Q  L  S  V  G  T  F  L  P  L  Q  M  L  I  Q  F  L  R :   A  Y  E  L  S  Q  V  P  W  G  A  F  L  L  S  R :   T  I  L  V  I  D  *  I  L  V  W  L  L  N  K  Q  N  L  K  V  I  K  S  R :   W  *  S  S  V  M  T  V  L  Y  H  L  Q  E  A  L  L  A  E  E  G  W  Q  G  R  F  L  F  T  R :   L  P  E  L  Q  Q  L  V  V  F  P  L  L  T  L  Q  L  K  P  N  V  H  Q  K  W  L  G  Q  W  A  L  R  Y  L  F  A  R  C  Q  D  R  *  L  Q  T  V  *  A  Q  G  R  W  S  L  V  L  E  Y :   M  G  N  Q  E  L  L  *  L  T  F  N  Q  *  M  W  W  F  L  M  F  *  R  R  F  C  H  R :   R  P  T  T  F  Q  S  R  V  G  V  E  S  C  S  *  L  M   : D  *  E  Q  H  H  *  W  N  *  *  L  *  L  A  R  L  S  Q  N  C  S  L  N  M  V  *  L  L  I  E  S  I  Q  G  H  L  *  R  H  L  I  W  Q  :  A  F  Q  F  R  *  *  R  L  I  K  Q  F  *  I  V  *  M  L  Q  L  K  L  Q  I  G  L  L  V  L  K  :  A  T  G  L  L  Q  R  F  L  F  H  F  R  H  H  I  L  S  R  L  K  R :   H  *  V  G  L  K  N  *  A  L  R  V  I  S  L  R  Q  L  L  K  Q  Q  L  L  K  L  *  I  S  G  I  I  *  M  S  G  T  I  K  L  V  M  A  I  V  V  Q  L :   C  S  E  V  L  W  L  Y  L  K  T  *  R  S   : T  I  R  *  M  T  L  Q  K  Q  S  M  K  L  E  P  P  L  E  E  *  W  G  E  L  A  V  S   : Y  T  V  Y  S  V  R  Q  H  M  R  S  *  K  K  M  L  S  R  L  S  Q  L  F  T  :  G  L  M  H  L  K  L  L  S  L  L  L  V  N  M  E  E  L  V  L  V  I  V  P  F  *  M  L  L  Y  Q  H  C  Q  L  L  K  R :   G  *  M  L  G  T  T  L  R  M  L  S  L  F  L  L  R  Q  H  L  L  E  P  S  Q  P  S  T  C  R  R  R :   L  A  V  Q  P  M  Y  P  E  I  F  L  H  Q  F  L  T  Q  V  P  W  L  Q  L  R  G  T  E  Q  L  R  *  L  *  R  R  S  I  I  Q  H  K  H  I  *  S  A  I  P  I  T  S  C  R  N  V  F  S  F  S  R  K  K  L  T  Q  Q  F  F  A  R  K  P  Y  E  E  L  A  F  R  L  C  S  P  A  *  S  R  E  S  V  E  N  V  C  Y  S  P  F  I  Q  C  S  K  *  G  K  K  Q  T  L  P  C  R  M  V  I  C  E  G  G  C  K  L  Y  C  N  N  G  F  S  Y  S  A  T  F  S  I  S  S  R  T  F  T  T  </first_frame>
            <second_frame>  L  Y  K  S  F  F  S  P  S  L  S  F  C  V  C  S  D  F  G  Q  S  I  Q  Q  L  K  S  T  L  P  T  P  T  K  P  S   : A  Q  L  S  D  G  F  S  E  Q  K  T  H  Q  R  P  Q  * :   C  C  D  R  V  H  *  G  T  Y  *  E  L  S  R  V  A  V  S  G  W  F  P  R   : G  *  G  R  L  A  C  *  C  F  W  C  K  I  *  Q  S  C  H  H  I  R :   W  W  K  W  P  *  A  C  S  C  W  I  C  W  R  R  D  A  D  C  S  Y  L  W  G  R  F  C  L  S  K  C  *  F  N  S  C   : G  H  T  S  C  H  R  S  H  G  V  P  S  Y  C  Q   : E  L  Y  W  *  S  T  E  F  W  F  G  C  *  T  S  K  I  *  R  L  *  S  R   : D  G  N  R  R  *  *  L  C  F  T  T  S  K  R  H  C  W  P  K  R  V  G  R  D  A  S  C  S  Q   : G  C  R  S  C  S  S  L  W  S  S  P  C  *  R  C  S  *  S  Q  T  C  I  R  N  G  W  D  N  G  R  C  V  I  C  L  H  V  A  R  T  G  D  F  R  P  F  R  P  R  E  D  G  A  W  S  W  N   : T  W  G  T  R  S  C  C  S  *  P  S  T  S  R  C  G  G  F  S  C  S  E  G  D  F  V  T   : G  D  Q  L  R  S  N  H  A  W  E  *  S  R  A  P  D  *  W  :  I  R  S  N  T  I  D  G  I  D  D  Y  S  W  Q  G  C  P  R  I  A  A  *  T  W  S  S  C  *  *  S  L  Y  R  V  I  Y  D  V  T  *  Y  G  R :   L  F  N  F  G  N  E  G  *  S  S  N  F  R  S  F  R  C  S  N  *  S  S  K  L  A  C  W  C  *  R :   Q  P  A  S  C  K  D  S  C  S  T  S  A  I  T  F  Y  Q  D  *  K   : D  I  E  S  A  *  K  T  E  P  S  G  S  Y  P  *  D  S  Y  *  S  S  S  Y  *  S  C  K  S  Q  G  *  F  E  *  V  G  Q  *  S  W  *  W  R  L  W  F  N   : Y  V  Q  R  C  C  G  Y  T  *  R  H  E  E  V  :  L  S  V  E  *  P  C  R  N  S  Q  *  N  W  S  L  H  W  K  S  N  G  G  N  *  R  Y  L  :  I  Q  Y  I  L  *  G  S  I  C  E  V  E  R  K  C  *  V  G  C  H  S  Y  S  L :   G  *  C  T  *  S  C  Y  R  C  C  *  *  I  W  R  S  *  C  W  L  S  Y  P  F  R  C  S  Y  T  S  I  V  S  S  *  R   : E  V  E  C  W  G  R  P  C  G  C  F  H  Y  F  C  *  G  S  I  C  W  S  R  V  N  Q  A  H  A  G  A   : G  W  P  F  N  L  C  T  R  R  Y  S  C  I  S  S  *  P  R  C  H  G  C  S  C  V  V  Q  S  S  C  V  S  C  E  G  E  V  *  Y  S  I  S  I  F  N  R  P  F  L  L  L  P  A  G  M  F  S  L  S  R  G  R  N  *  P  N  N  F  L  L  V  N  L  M  R  S  *  L  S  A  Y  A  V  L  H  K  A  E  R  V  *  K  M  Y  V  T  V  L  L  Y  S  V  L  S  E  G  K  N  K  H  C  H  V  E  W  *  S  V  K  V  V  V  N  F  I  V  T  M  D  F  L  I  L  L  L  L  A  S  L  R  A  P  L  Q  R </second_frame>
            <third_frame>   S  I  N  L  F  F  P  L  L  S  L  F  V  F  V  Q  T  S  D  K  A  F  N  N  *  S  L  L  S  P  H  L  Q  S  P  Q  :  H  N  Y  P  M  D  F  Q  S  K  K  L  I  N  D  P  N   : D  V  V  T  E  F  I  E  G  L  I  E  N  Y  P  G  L  Q  Y  L  D  G  F  P  E  :  V  K  V  V  L  R  A  D  V  S  G  A  K  Y  D  K  V  A  I  I  S   : G  G  G  S  G  H  E  P  A  H  A  G  F  V  G  E  G  M  L  T  A  A  I  C  G  D  V  F  A  S  P  N  V  D  S  I  L  A  :  G  I  R  A  V  T  G  P  M  G  C  L  L  I  V  K  :  N  Y  T  G  D  R  L  N  F  G  L  A  A  E  Q  A  K  S  E  G  Y  K  V  E  :  M  V  I  V  G  D  D  C  A  L  P  P  P  R  G  I  A  G  R  R  G  L  A  G  T  L  L  V  H  K  :  V  A  G  A  A  A  A  C  G  L  P  L  A  D  V  A  A  E  A  K  R  A  S  E  M  V  G  T  M  G  V  A  L  S  V  C  T  L  P  G  Q  V  T  S  D  R  L  G  P  G  K  M  E  L  G  L  G  I  :  H  G  E  P  G  A  A  V  A  D  L  Q  P  V  D  V  V  V  S  H  V  L  K  E  I  L  S  P  :  E  T  N  Y  V  P  I  T  R  G  S  R  V  V  L  L  I  N  G :   L  G  A  T  P  L  M  E  L  M  I  I  A  G  K  A  V  P  E  L  Q  L  E  H  G  L  A  V  D  R  V  Y  T  G  S  F  M  T  S  L  D  M  A   : G  F  S  I  S  V  M  K  A  D  Q  A  I  L  D  R  L  D  A  P  T  K  A  P  N  W  P  V  G  A  E   : G  N  R  P  P  A  K  I  P  V  P  L  P  P  S  H  S  I  K  I  E  K  :  T  L  S  R  P  E  K  L  S  P  Q  G  H  I  L  E  T  A  I  E  A  A  A  T  E  V  V  N  L  R  D  N  L  N  E  W  D  N  K  V  G  D  G  D  C  G  S  T  :  M  F  R  G  A  V  A  I  L  E  D  M  K  K  Y :   Y  P  L  N  D  P  A  E  T  V  N  E  I  G  A  S  I  G  R  V  M  G  G  T  S  G  I  L :   Y  S  I  F  C  K  A  A  Y  A  K  L  K  E  N  A  E  S  V  V  T  A  I  H   : W  A  D  A  L  E  A  A  I  A  A  V  S  K  Y  G  G  A  S  A  G  Y  R  T  L  L  D  A  L  I  P  A  L  S  A  L  K  E  :  R  L  N  A  G  D  D  P  A  D  A  F  I  I  S  A  E  A  A  S  A  G  A  E  S  T  K  H  M  Q  A  Q  :  A  G  R  S  T  Y  V  P  G  D  I  L  A  S  V  P  D  P  G  A  M  A  A  A  A  W  Y  R  A  A  A  L  A  V  K  E  K  Y  N  T  A  *  A  Y  L  I  G  H  S  Y  Y  F  L  Q  E  C  F  L  F  L  E  E  E  I  N  P  T  I  F  C  S  *  T  L  *  G  V  S  F  P  L  M  Q  S  C  I  K  P  R  E  C  R  K  C  M  L  Q  S  F  Y  T  V  F  *  V  R  E  K  T  N  T  A  M  *  N  G  N  L  *  R  W  L  *  T  L  L  *  Q  W  I  F  L  F  C  Y  F  *  H  L  F  A  H  L  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36550" stop="36582"/>
                    <exon start="36672" stop="36723"/>
                    <exon start="38256" stop="38329"/>
                    <exon start="38440" stop="38503"/>
                    <exon start="39260" stop="39372"/>
                    <exon start="39470" stop="39517"/>
                    <exon start="39769" stop="39840"/>
                    <exon start="39984" stop="40073"/>
                    <exon start="41120" stop="41293"/>
                    <exon start="41646" stop="41729"/>
                    <exon start="42520" stop="42575"/>
                    <exon start="42914" stop="43044"/>
                    <exon start="43113" stop="43205"/>
                    <exon start="43498" stop="43562"/>
                    <exon start="43794" stop="43937"/>
                    <exon start="44022" stop="44065"/>
                    <exon start="44923" stop="45006"/>
                    <exon start="45107" stop="45180"/>
                    <exon start="45270" stop="45382"/>
                    <exon start="45472" stop="45567"/>
                    <exon start="46526" stop="46651"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1827</number_coding_nucleotides>
                  <number_encoded_amino_acids>609</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLSPHLQSPQHNYPMDFQSKKLINDPNDVVTEFIEGLIENYPGLQYLDGFPEVKVVLRADVSGAKYDKVAIISGGGSGHEPAHAGFVGEGMLTAAICGDVFASPNVDSILAGIRAVTGPMGCLLIVKNYTGDRLNFGLAAEQAKSEGYKVEMVIVGDDCALPPPRGIAGRRGLAGTLLVHKVAGAAAACGLPLADVAAEAKRASEMVGTMGVALSVCTLPGQVTSDRLGPGKMELGLGIHGEPGAAVADLQPVDVVVSHVLKEILSPETNYVPITRGSRVVLLINGLGATPLMELMIIAGKAVPELQLEHGLAVDRVYTGSFMTSLDMAGFSISVMKADQAILDRLDAPTKAPNWPVGAEGNRPPAKIPVPLPPSHSIKIEKTLSRPEKLSPQGHILETAIEAAATEVVNLRDNLNEWDNKVGDGDCGSTMFRGAVAILEDMKKYYPLNDPAETVNEIGASIGRVMGGTSGILYSIFCKAAYAKLKENAESVVTAIHWADALEAAIAAVSKYGGASAGYRTLLDALIPALSALKERLNAGDDPADAFIISAEAASAGAESTKHMQAQAGRSTYVPGDILASVPDPGAMAAAAWYRAAALAVKEKYNTA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44300" e_stop="44693"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="44300" e_stop="44693" e_length="394"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44300" stop="44693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCCACCGAGTTTAGAAGGCTGTGATTGGTCCAAAGAGCGGGTCACAGACGGATTTCTCAGTTGTCAAAAAAAATAATTATTCACTAACAGACAATATGTGTCTTTGTTTGTTTTCCCTCTTTCCTGCTTGCACCGTCTGTGGTGTGGTTATTTCAGAGTGTTCTGCTTGTACACATCTGCTTGCAGCATTGTTTGCTCTTGGGAAATCCCTGTAATTAATTGTTGGGTATAGATAGGTTTCATTTTTTAAACAGGGGAGGTAGAAGTCTCTTCATGAGTTAAAACACGAGGTTTTGTGAAAGACAGCTTGAGACGGCAGAAGTTGTGTTTAATCTCCTTTGTAGTCAACTTAATGATATGATATGAAAAATCAGCTGCTATTGCATGTTTTC</gDNA_template>
            <first_frame> Y  P  P  S  L  E  G  C  D  W  S  K  E  R  V  T  D  G  F  L  S  C  Q  K  K  *  L  F  T  N  R  Q  Y  V  S  L  F  V  F  P  L  S  C  L  H  R  L  W  C  G  Y  F  R  V  F  C  L  Y  T  S  A  C  S  I  V  C  S  W  E  I  P  V  I  N  C  W  V  *  I  G  F  I  F  *  T  G  E  V  E  V  S  S  *  V  K  T  R  G  F  V  K  D  S  L  R  R  Q  K  L  C  L  I  S  F  V  V  N  L  M  I  *  Y  E  K  S  A  A  I  A  C  F  </first_frame>
            <second_frame>  I  H  R  V  *  K  A  V  I  G  P  K  S  G  S  Q  T  D  F  S  V  V  K  K  N  N  Y  S  L  T  D  N  M  C  L  C  L  F  S  L  F  P  A  C  T  V  C  G  V  V  I  S  E  C  S  A  C  T  H  L  L  A  A  L  F  A  L  G  K  S  L  *  L  I  V  G  Y  R  *  V  S  F  F  K  Q  G  R  *  K  S  L  H  E  L  K  H  E  V  L  *  K  T  A  *  D  G  R  S  C  V  *  S  P  L  *  S  T  *  *  Y  D  M  K  N  Q  L  L  L  H  V  F </second_frame>
            <third_frame>   S  T  E  F  R  R  L  *  L  V  Q  R  A  G  H  R  R  I  S  Q  L  S  K  K  I  I  I  H  *  Q  T  I  C  V  F  V  C  F  P  S  F  L  L  A  P  S  V  V  W  L  F  Q  S  V  L  L  V  H  I  C  L  Q  H  C  L  L  L  G  N  P  C  N  *  L  L  G  I  D  R  F  H  F  L  N  R  G  G  R  S  L  F  M  S  *  N  T  R  F  C  E  R  Q  L  E  T  A  E  V  V  F  N  L  L  C  S  Q  L  N  D  M  I  *  K  I  S  C  Y  C  M  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44316" stop="44516"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAVIGPKSGSQTDFSVVKKNNYSLTDNMCLCLFSLFPACTVCGVVISECSACTHLLAALFALGKSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="53061" PGL_stop="47800"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53061" e_stop="52531"/>
            <exon e_start="48154" e_stop="48099"/>
            <exon e_start="47820" e_stop="47800"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.836" acc_prob="0.000" e_score="0.928"/>
          <exon-intron don_prob="0.000" acc_prob="0.902" e_score="0.661"/>
          <exon-only e_score="0.429"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="53061" e_stop="52531" e_length="531"/>
          </exon>
          <intron i_serial="1" don_prob="0.836" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52530" i_stop="48155" i_length="4376"/>
          </intron>
          <exon e_serial="2" e_score="0.661">
            <gDNA_exon_boundary e_start="48154" e_stop="48099" e_length="56"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.902">
            <gDNA_intron_boundary i_start="48098" i_stop="47821" i_length="278"/>
          </intron>
          <exon e_serial="3" e_score="0.429">
            <gDNA_exon_boundary e_start="47820" e_stop="47800" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53061" stop="52531"/>
              <exon start="48154" stop="48099"/>
              <exon start="47820" stop="47800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338086" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATGGATCTTTTTCTCCTTCCTATGTGGAAAAATAAAAGTCCAATTTGGACCAATCCATTTTTGCCCATAGGCCTATTCTTATTAGGCAAATATAAGAATATTTAGGTCTTATTTTCAAATACACAGAGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCAC : ATAAATTGCAAAAAAATAAAAATAAAAAGGTTAAAAAAAATAAAATACCATGAGTA : GATCGTGTGATCCTCTTCTAA</gDNA_template>
            <first_frame> L  W  I  F  F  S  F  L  C  G  K  I  K  V  Q  F  G  P  I  H  F  C  P  *  A  Y  S  Y  *  A  N  I  R  I  F  R  S  Y  F  Q  I  H  R  E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  V  F  G  G  L  Q  L  Q  F  C  C  R  E  *  *  L  R  N  *  *  F  C  S  F  N  P  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  :  I  N  C  K  K  I  K  I  K  R  L  K  K  I  K  Y  H  E  * :   I  V  *  S  S  S   </first_frame>
            <second_frame>  Y  G  S  F  S  P  S  Y  V  E  K  *  K  S  N  L  D  Q  S  I  F  A  H  R  P  I  L  I  R  Q  I  *  E  Y  L  G  L  I  F  K  Y  T  E  S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  Q  K  F  S  P  N  S  Q  L  Q  I  A  I  L  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  Y  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  S  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T :   *  I  A  K  K  *  K  *  K  G  *  K  K  *  N  T  M  S   : R  S  C  D  P  L  L  </second_frame>
            <third_frame>   M  D  L  F  L  L  P  M  W  K  N  K  S  P  I  W  T  N  P  F  L  P  I  G  L  F  L  L  G  K  Y  K  N  I  *  V  L  F  S  N  T  Q  R  V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  K  N  S  A  L  T  A  N  F  K  L  R  F  S  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  I  W  W  P  A  A  S  V  L  L  S  *  I  V  A  A  K  L  V  I  L  L  L  *  S  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P   : H  K  L  Q  K  N  K  N  K  K  V  K  K  N  K  I  P  *  V  :  D  R  V  I  L  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52698" stop="52531"/>
                    <exon start="48154" stop="47820"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNPLDLVQSYFVVARCLALVLWPILENNIVTLGDYSGAFGPVVFYSSHRRVFHINCKKIKIKRLKKIKYHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52933" e_stop="52518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="52933" e_stop="52518" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52933" stop="52518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTTTTTTCAGCAGCCAAAAAGAGAGAAAAAGAGCAGTTTTTCGCAGTCAAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCTCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGTATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAATAGTAGCTGCGAAATTAGTGATTTTGCTCCTTTAATCCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGCACTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGGTG</gDNA_template>
            <first_frame> R  V  F  S  A  A  K  K  R  E  K  E  Q  F  F  A  V  K  N  S  A  L  T  A  N  F  K  L  R  F  S  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  I  W  W  P  A  A  S  V  L  L  S  *  I  V  A  A  K  L  V  I  L  L  L  *  S  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W   </first_frame>
            <second_frame>  E  F  F  Q  Q  P  K  R  E  K  K  S  S  F  S  Q  S  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  V  F  G  G  L  Q  L  Q  F  C  C  R  E  *  *  L  R  N  *  *  F  C  S  F  N  P  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  A  L  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  G  </second_frame>
            <third_frame>   S  F  F  S  S  Q  K  E  R  K  R  A  V  F  R  S  Q  K  F  S  P  N  S  Q  L  Q  I  A  I  L  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  Y  L  V  A  C  S  F  S  F  A  V  V  N  S  S  C  E  I  S  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  H  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="69449" PGL_stop="68197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69449" e_stop="69268"/>
            <exon e_start="69160" e_stop="69025"/>
            <exon e_start="68617" e_stop="68197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.476" e_score="1.000"/>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69449" e_stop="69268" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="69267" i_stop="69161" i_length="107"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69160" e_stop="69025" e_length="136"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.476">
            <gDNA_intron_boundary i_start="69024" i_stop="68618" i_length="407"/>
          </intron>
          <exon e_serial="3" e_score="0.983">
            <gDNA_exon_boundary e_start="68617" e_stop="68197" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69449" stop="69268"/>
              <exon start="69160" stop="69025"/>
              <exon start="68617" stop="68197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317269" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATCAAGAGAGTGAAAAAAAAAAGATTTATTAAAATGGAAACACCAAGGGCTATGGCAATCCTCCTTCTTAGACTTGTCACTATGTTGTTGTGCGGAGCTTCAGTACCAATCATGATTACCAACAGCTTCCAACTTAGTGGAGGAGAAAAAACTAAATACAGTGACGTTAAGGGCTACAG : GTACGTGGTAGCAGCGGCACTAGTTGGATCTATCTACTCATTGATTCAACTGCCATTTGCATTGTATTACGCCGTGACAGGGAAAAGAGTTTTTCATGGCAACTTCCTTGGCCGCTTGGATTTTTTCGTAGATAAG : GTGCTAAGTTTTTTCCTAGCAAGTGGAGTTGGTGTTGGTTTTGGTGTTAGTTCTGAGCTCAAACGTTACGTAAATGGATTTGTAGACACAATTGAAACAACTGGGATCGATACATTCGAAGAGTTGAGGAAGAAGAGTCTAATATTCTTCGATAGAGGTCATTTAGCAACTACTCCACTTCTTGCTGGATTTGGTACCATGGCTGTGCTCACCATTATTACTTCATACCATCGCAAATAAAGATCGCTACACTTGAGTGTAGTGAAAAATAAACGTTGAGTATTGTTGTTTAATTCGCGTGTGATCGTTGTTTAAATAATTTGTGTGTGTTGAGTTTGAAGATGCAATAATAATAATAATATGTGTATGTACTTTGTTTCAATGAATATCAAGAAATGGAAATGTACTAGTACTATTGCTA</gDNA_template>
            <first_frame> K  I  K  R  V  K  K  K  R  F  I  K  M  E  T  P  R  A  M  A  I  L  L  L  R  L  V  T  M  L  L  C  G  A  S  V  P  I  M  I  T  N  S  F  Q  L  S  G  G  E  K  T  K  Y  S  D  V  K  G  Y  R :   Y  V  V  A  A  A  L  V  G  S  I  Y  S  L  I  Q  L  P  F  A  L  Y  Y  A  V  T  G  K  R  V  F  H  G  N  F  L  G  R  L  D  F  F  V  D  K  :  V  L  S  F  F  L  A  S  G  V  G  V  G  F  G  V  S  S  E  L  K  R  Y  V  N  G  F  V  D  T  I  E  T  T  G  I  D  T  F  E  E  L  R  K  K  S  L  I  F  F  D  R  G  H  L  A  T  T  P  L  L  A  G  F  G  T  M  A  V  L  T  I  I  T  S  Y  H  R  K  *  R  S  L  H  L  S  V  V  K  N  K  R  *  V  L  L  F  N  S  R  V  I  V  V  *  I  I  C  V  C  *  V  *  R  C  N  N  N  N  N  M  C  M  Y  F  V  S  M  N  I  K  K  W  K  C  T  S  T  I  A  </first_frame>
            <second_frame>  K  S  R  E  *  K  K  K  D  L  L  K  W  K  H  Q  G  L  W  Q  S  S  F  L  D  L  S  L  C  C  C  A  E  L  Q  Y  Q  S  *  L  P  T  A  S  N  L  V  E  E  K  K  L  N  T  V  T  L  R  A  T   : G  T  W  *  Q  R  H  *  L  D  L  S  T  H  *  F  N  C  H  L  H  C  I  T  P  *  Q  G  K  E  F  F  M  A  T  S  L  A  A  W  I  F  S  *  I  R :   C  *  V  F  S  *  Q  V  E  L  V  L  V  L  V  L  V  L  S  S  N  V  T  *  M  D  L  *  T  Q  L  K  Q  L  G  S  I  H  S  K  S  *  G  R  R  V  *  Y  S  S  I  E  V  I  *  Q  L  L  H  F  L  L  D  L  V  P  W  L  C  S  P  L  L  L  H  T  I  A  N  K  D  R  Y  T  *  V  *  *  K  I  N  V  E  Y  C  C  L  I  R  V  *  S  L  F  K  *  F  V  C  V  E  F  E  D  A  I  I  I  I  I  C  V  C  T  L  F  Q  *  I  S  R  N  G  N  V  L  V  L  L  L </second_frame>
            <third_frame>   N  Q  E  S  E  K  K  K  I  Y  *  N  G  N  T  K  G  Y  G  N  P  P  S  *  T  C  H  Y  V  V  V  R  S  F  S  T  N  H  D  Y  Q  Q  L  P  T  *  W  R  R  K  N  *  I  Q  *  R  *  G  L  Q  :  V  R  G  S  S  G  T  S  W  I  Y  L  L  I  D  S  T  A  I  C  I  V  L  R  R  D  R  E  K  S  F  S  W  Q  L  P  W  P  L  G  F  F  R  R  *   : G  A  K  F  F  P  S  K  W  S  W  C  W  F  W  C  *  F  *  A  Q  T  L  R  K  W  I  C  R  H  N  *  N  N  W  D  R  Y  I  R  R  V  E  E  E  E  S  N  I  L  R  *  R  S  F  S  N  Y  S  T  S  C  W  I  W  Y  H  G  C  A  H  H  Y  Y  F  I  P  S  Q  I  K  I  A  T  L  E  C  S  E  K  *  T  L  S  I  V  V  *  F  A  C  D  R  C  L  N  N  L  C  V  L  S  L  K  M  Q  *  *  *  *  Y  V  Y  V  L  C  F  N  E  Y  Q  E  M  E  M  Y  *  Y  Y  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69449" stop="69268"/>
                    <exon start="69160" stop="69025"/>
                    <exon start="68617" stop="68378"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KIKRVKKKRFIKMETPRAMAILLLRLVTMLLCGASVPIMITNSFQLSGGEKTKYSDVKGYRYVVAAALVGSIYSLIQLPFALYYAVTGKRVFHGNFLGRLDFFVDKVLSFFLASGVGVGFGVSSELKRYVNGFVDTIETTGIDTFEELRKKSLIFFDRGHLATTPLLAGFGTMAVLTIITSYHRK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="81110" PGL_stop="85259"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81110" e_stop="81152"/>
            <exon e_start="81234" e_stop="81512"/>
            <exon e_start="84031" e_stop="84174"/>
            <exon e_start="84828" e_stop="85259"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81110" e_stop="81152" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.964">
            <gDNA_intron_boundary i_start="81153" i_stop="81233" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81234" e_stop="81512" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="81513" i_stop="84030" i_length="2518"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="84031" e_stop="84174" e_length="144"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.987">
            <gDNA_intron_boundary i_start="84175" i_stop="84827" i_length="653"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="84828" e_stop="85259" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81110" stop="81152"/>
              <exon start="81234" stop="81512"/>
              <exon start="84031" stop="84174"/>
              <exon start="84828" stop="85259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326807" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCTGGTGGAGAAGTCTACTTTACCATGCCAAGACTGCAG : TCAATCACAATTCAGTGTTTAGAGGCTCTTCAGTTCTTGCATGGCCTCGGACTCATACATTGTGATTTGAAGCCCGAAAACATATTGGTGAAAAGCTACAGTAGATGTGAGGTGAAGGTAATTGATCTGGGTAGCAGTTGTTTTGAAACAGATCATCTTTGTTCTTACGTCCAATCAAGGTCCTACCGTGCACCAGAAGTTATTTTAGGGCTTCCTTATGATAAAAAGATAGATATTTGGTCCCTTGGCTGCATTTTGGCAGAACTTTGCACGGGCAAT : GTCCTTTTCCAGAATGACTCTCCTGCCACGTTACTTGCAAGGGTACTTGGTATCACAGGTCCGATTGACCAAGAGATGCTTGTCAAAGGACGAGACACTTACAAATATTTCACCAAAAATCACATGCTATATGAACGAAATCAA : GAAACAAACAGAATGGAATACTTAATACCCAAAAAGACATCCTTGAGGTATCGATTGCCAATGGGAGATCAAGGTTTCGTTGATTTTGTGGCTCATCTTTTAGAAGTTAACCCAAAGACGCGGCCTTCTGCCTTGGAGGCTCTAAAACATCCATGGCTATCATATCCATATGAGCCAATATCATCGTGAGTCATGTGAGATCTCTTGGCTCTGAAGGTGTTTTCTATTGGTTTGATTTGGATTCTCCAGTGGTGATATATGAAGAAAGTTGTCCAAGCTGGGTTGTATTTCTAGCTAACACATATAGAGTGTTATGTAACATCAAGATTTTCCCTTTTCTTCCTCGTCTTTTTTTGGTCGCAGCAAATGCGTTCTGTTTGTACATGATGTCTACTAATTCTTTTTAGGTATTTAGTGATAGCTTGTGAAGCA</gDNA_template>
            <first_frame> R  S  W  W  R  S  L  L  Y  H  A  K  T  A   : V  N  H  N  S  V  F  R  G  S  S  V  L  A  W  P  R  T  H  T  L  *  F  E  A  R  K  H  I  G  E  K  L  Q  *  M  *  G  E  G  N  *  S  G  *  Q  L  F  *  N  R  S  S  L  F  L  R  P  I  K  V  L  P  C  T  R  S  Y  F  R  A  S  L  *  *  K  D  R  Y  L  V  P  W  L  H  F  G  R  T  L  H  G  Q   : C  P  F  P  E  *  L  S  C  H  V  T  C  K  G  T  W  Y  H  R  S  D  *  P  R  D  A  C  Q  R  T  R  H  L  Q  I  F  H  Q  K  S  H  A  I  *  T  K  S   : R  N  K  Q  N  G  I  L  N  T  Q  K  D  I  L  E  V  S  I  A  N  G  R  S  R  F  R  *  F  C  G  S  S  F  R  S  *  P  K  D  A  A  F  C  L  G  G  S  K  T  S  M  A  I  I  S  I  *  A  N  I  I  V  S  H  V  R  S  L  G  S  E  G  V  F  Y  W  F  D  L  D  S  P  V  V  I  Y  E  E  S  C  P  S  W  V  V  F  L  A  N  T  Y  R  V  L  C  N  I  K  I  F  P  F  L  P  R  L  F  L  V  A  A  N  A  F  C  L  Y  M  M  S  T  N  S  F  *  V  F  S  D  S  L  *  S  </first_frame>
            <second_frame>  E  A  G  G  E  V  Y  F  T  M  P  R  L  Q  :  S  I  T  I  Q  C  L  E  A  L  Q  F  L  H  G  L  G  L  I  H  C  D  L  K  P  E  N  I  L  V  K  S  Y  S  R  C  E  V  K  V  I  D  L  G  S  S  C  F  E  T  D  H  L  C  S  Y  V  Q  S  R  S  Y  R  A  P  E  V  I  L  G  L  P  Y  D  K  K  I  D  I  W  S  L  G  C  I  L  A  E  L  C  T  G  N  :  V  L  F  Q  N  D  S  P  A  T  L  L  A  R  V  L  G  I  T  G  P  I  D  Q  E  M  L  V  K  G  R  D  T  Y  K  Y  F  T  K  N  H  M  L  Y  E  R  N  Q  :  E  T  N  R  M  E  Y  L  I  P  K  K  T  S  L  R  Y  R  L  P  M  G  D  Q  G  F  V  D  F  V  A  H  L  L  E  V  N  P  K  T  R  P  S  A  L  E  A  L  K  H  P  W  L  S  Y  P  Y  E  P  I  S  S  *  V  M  *  D  L  L  A  L  K  V  F  S  I  G  L  I  W  I  L  Q  W  *  Y  M  K  K  V  V  Q  A  G  L  Y  F  *  L  T  H  I  E  C  Y  V  T  S  R  F  S  L  F  F  L  V  F  F  W  S  Q  Q  M  R  S  V  C  T  *  C  L  L  I  L  F  R  Y  L  V  I  A  C  E  A </second_frame>
            <third_frame>   K  L  V  E  K  S  T  L  P  C  Q  D  C  S :   Q  S  Q  F  S  V  *  R  L  F  S  S  C  M  A  S  D  S  Y  I  V  I  *  S  P  K  T  Y  W  *  K  A  T  V  D  V  R  *  R  *  L  I  W  V  A  V  V  L  K  Q  I  I  F  V  L  T  S  N  Q  G  P  T  V  H  Q  K  L  F  *  G  F  L  M  I  K  R  *  I  F  G  P  L  A  A  F  W  Q  N  F  A  R  A  M :   S  F  S  R  M  T  L  L  P  R  Y  L  Q  G  Y  L  V  S  Q  V  R  L  T  K  R  C  L  S  K  D  E  T  L  T  N  I  S  P  K  I  T  C  Y  M  N  E  I  K :   K  Q  T  E  W  N  T  *  Y  P  K  R  H  P  *  G  I  D  C  Q  W  E  I  K  V  S  L  I  L  W  L  I  F  *  K  L  T  Q  R  R  G  L  L  P  W  R  L  *  N  I  H  G  Y  H  I  H  M  S  Q  Y  H  R  E  S  C  E  I  S  W  L  *  R  C  F  L  L  V  *  F  G  F  S  S  G  D  I  *  R  K  L  S  K  L  G  C  I  S  S  *  H  I  *  S  V  M  *  H  Q  D  F  P  F  S  S  S  S  F  F  G  R  S  K  C  V  L  F  V  H  D  V  Y  *  F  F  L  G  I  *  *  *  L  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81111" stop="81152"/>
                    <exon start="81234" stop="81512"/>
                    <exon start="84031" stop="84174"/>
                    <exon start="84828" stop="85016"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EAGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVLGITGPIDQEMLVKGRDTYKYFTKNHMLYERNQETNRMEYLIPKKTSLRYRLPMGDQGFVDFVAHLLEVNPKTRPSALEALKHPWLSYPYEPISS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85001" stop="85234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANIIVSHVRSLGSEGVFYWFDLDSPVVIYEESCPSWVVFLANTYRVLCNIKIFPFLPRLFLVAANAFCLYMMSTNSF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="87342" PGL_stop="85403"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87342" e_stop="87252"/>
            <exon e_start="86433" e_stop="86264"/>
            <exon e_start="85870" e_stop="85403"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.923" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87342" e_stop="87252" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.961">
            <gDNA_intron_boundary i_start="87251" i_stop="86434" i_length="818"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86433" e_stop="86264" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.923">
            <gDNA_intron_boundary i_start="86263" i_stop="85871" i_length="393"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85870" e_stop="85403" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87342" stop="87252"/>
              <exon start="86433" stop="86264"/>
              <exon start="85870" stop="85403"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATG : TCAACTCCATTAGTTGTTGGAACTACCATTGGTGCTGCTGCTTTGGGAGCTAGATACTTGATAAGAGCGTGGCAAAGGTTCAAAGCAGCACCCCGAGTGAGGAGGTTTTATCCTGGGGGCTTTGATCGGGATATGACACGGCGAGAAGCAGCATTGATTCTCGGAGTTAG : GGAAAGTGCTGTCTTGCAGAAGATCAAGGAGGCTCACAGGAGAGTAATGGTAGCAAATCATCCAGACGCCGGTGGCAGCCATTATCTTGCTTCCAAGATCAATGAAGCCAAGGACGTGTTGTTAGGGAAAACCAAGGGAGCTAATTCTGCATTTTAATTGACCAGTGTGTTCTTTACGCTGCGAATTCTTAACAGCTTCATGATAGTCAACATTAAAATGGATCTTTTTCTGGGGAAAAGGAGAACATATTCTGTTTCGAGTTAAGAGGTGAATTTGTATCAACAGCTGGGTGCATTACTGCCATAAATTTCATGTAATGCAACCAGAAATATTCTTTGCAGATTGTTTACAATAAAAAGTTGTATATTCCTGTTAACTATACTCTATTTTGAACCATTACTCGATCTGCATGTAGTATGTACGCAGTGGGTTCATCCCACCTACTGCTCGACTTGAACTAACTACAT</gDNA_template>
            <first_frame> S  S  T  S  L  S  Q  I  S  Q  L  T  A  Y  *  K  S  *  I  S  S  L  L  K  T  C  E  F  S  H   : V  N  S  I  S  C  W  N  Y  H  W  C  C  C  F  G  S  *  I  L  D  K  S  V  A  K  V  Q  S  S  T  P  S  E  E  V  L  S  W  G  L  *  S  G  Y  D  T  A  R  S  S  I  D  S  R  S  *  :  G  K  C  C  L  A  E  D  Q  G  G  S  Q  E  S  N  G  S  K  S  S  R  R  R  W  Q  P  L  S  C  F  Q  D  Q  *  S  Q  G  R  V  V  R  E  N  Q  G  S  *  F  C  I  L  I  D  Q  C  V  L  Y  A  A  N  S  *  Q  L  H  D  S  Q  H  *  N  G  S  F  S  G  E  K  E  N  I  F  C  F  E  L  R  G  E  F  V  S  T  A  G  C  I  T  A  I  N  F  M  *  C  N  Q  K  Y  S  L  Q  I  V  Y  N  K  K  L  Y  I  P  V  N  Y  T  L  F  *  T  I  T  R  S  A  C  S  M  Y  A  V  G  S  S  H  L  L  L  D  L  N  *  L  H </first_frame>
            <second_frame>  L  L  L  L  Y  L  K  F  L  S  *  L  H  I  E  N  P  E  S  H  H  C  *  R  L  A  S  F  L  M  :  S  T  P  L  V  V  G  T  T  I  G  A  A  A  L  G  A  R  Y  L  I  R  A  W  Q  R  F  K  A  A  P  R  V  R  R  F  Y  P  G  G  F  D  R  D  M  T  R  R  E  A  A  L  I  L  G  V  R :   E  S  A  V  L  Q  K  I  K  E  A  H  R  R  V  M  V  A  N  H  P  D  A  G  G  S  H  Y  L  A  S  K  I  N  E  A  K  D  V  L  L  G  K  T  K  G  A  N  S  A  F  *  L  T  S  V  F  F  T  L  R  I  L  N  S  F  M  I  V  N  I  K  M  D  L  F  L  G  K  R  R  T  Y  S  V  S  S  *  E  V  N  L  Y  Q  Q  L  G  A  L  L  P  *  I  S  C  N  A  T  R  N  I  L  C  R  L  F  T  I  K  S  C  I  F  L  L  T  I  L  Y  F  E  P  L  L  D  L  H  V  V  C  T  Q  W  V  H  P  T  Y  C  S  T  *  T  N  Y   </second_frame>
            <third_frame>   F  Y  F  F  I  S  N  F  S  A  D  C  I  L  K  I  L  N  L  I  I  V  E  D  L  R  V  F  S  C :   Q  L  H  *  L  L  E  L  P  L  V  L  L  L  W  E  L  D  T  *  *  E  R  G  K  G  S  K  Q  H  P  E  *  G  G  F  I  L  G  A  L  I  G  I  *  H  G  E  K  Q  H  *  F  S  E  L   : G  K  V  L  S  C  R  R  S  R  R  L  T  G  E  *  W  *  Q  I  I  Q  T  P  V  A  A  I  I  L  L  P  R  S  M  K  P  R  T  C  C  *  G  K  P  R  E  L  I  L  H  F  N  *  P  V  C  S  L  R  C  E  F  L  T  A  S  *  *  S  T  L  K  W  I  F  F  W  G  K  G  E  H  I  L  F  R  V  K  R  *  I  C  I  N  S  W  V  H  Y  C  H  K  F  H  V  M  Q  P  E  I  F  F  A  D  C  L  Q  *  K  V  V  Y  S  C  *  L  Y  S  I  L  N  H  Y  S  I  C  M  *  Y  V  R  S  G  F  I  P  P  T  A  R  L  E  L  T  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87272" stop="87252"/>
                    <exon start="86433" stop="86264"/>
                    <exon start="85870" stop="85714"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLASFLMSTPLVVGTTIGAAALGARYLIRAWQRFKAAPRVRRFYPGGFDRDMTRREAALILGVRESAVLQKIKEAHRRVMVANHPDAGGSHYLASKINEAKDVLLGKTKGANSAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="87341" e_stop="86645"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="87341" e_stop="86645" e_length="697"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87341" stop="86645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338059" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTACTTCTTTATCTCAAATTTCTCAGCTGACTGCATATTGAAAATCCTGAATCTCATCATTGTTGAAGACTTGCGAGTTTTCTCATGGTAATTAATCTTCTACTTCTTTCACTTTCCTTGAGAATTTCTGTTTTAGGATTTTATCATTTTTGCTGTGATGAAAATAATTTGTTTTTTTTTAAGTTTAATAAGTACTTCATGGTAAGCGCCTGTATGCAATGAAATCAGCTCTGTGAGCTTGGCTGGTGGATACAGCAATCTATGTTCTTTTTCCAAATTTTGTCTCAAATTTGAAATTGAGCTCCTGTTTAGCCATATAGTTTTGAGGTTGCAAACTTGAATTTGAGTTTTTGAAATTTTTAGTTTTGTTTAGACATACATTTGACCTGGAAAAAGTTGAAGTTTTGTGTGTGGATGTGCCAAAAACGCAACTTTTTGGAATTTATTTCACGATAAAATGGATATTCGATGATAAATTTTTGAAATTTAATCCTAAAATCTATATGGTCAAACTCTAGCTATGGGAAAAAGGTCAAATTTAGTATTTGAGACAGCCAAGTTCATTAATCTTTGTTTTCTTTTTCAAGTATATAGTACTTTTAATTGCATAATTGAACCTCAAAGCATATTGTGTTTTGCGCTTCAATTATTGTTGATAAATGTTCTGGGATAGTGTATATATAGACCTGCTTGA</gDNA_template>
            <first_frame> L  L  L  L  Y  L  K  F  L  S  *  L  H  I  E  N  P  E  S  H  H  C  *  R  L  A  S  F  L  M  V  I  N  L  L  L  L  S  L  S  L  R  I  S  V  L  G  F  Y  H  F  C  C  D  E  N  N  L  F  F  F  K  F  N  K  Y  F  M  V  S  A  C  M  Q  *  N  Q  L  C  E  L  G  W  W  I  Q  Q  S  M  F  F  F  Q  I  L  S  Q  I  *  N  *  A  P  V  *  P  Y  S  F  E  V  A  N  L  N  L  S  F  *  N  F  *  F  C  L  D  I  H  L  T  W  K  K  L  K  F  C  V  W  M  C  Q  K  R  N  F  L  E  F  I  S  R  *  N  G  Y  S  M  I  N  F  *  N  L  I  L  K  S  I  W  S  N  S  S  Y  G  K  K  V  K  F  S  I  *  D  S  Q  V  H  *  S  L  F  S  F  S  S  I  *  Y  F  *  L  H  N  *  T  S  K  H  I  V  F  C  A  S  I  I  V  D  K  C  S  G  I  V  Y  I  *  T  C  L  </first_frame>
            <second_frame>  F  Y  F  F  I  S  N  F  S  A  D  C  I  L  K  I  L  N  L  I  I  V  E  D  L  R  V  F  S  W  *  L  I  F  Y  F  F  H  F  P  *  E  F  L  F  *  D  F  I  I  F  A  V  M  K  I  I  C  F  F  L  S  L  I  S  T  S  W  *  A  P  V  C  N  E  I  S  S  V  S  L  A  G  G  Y  S  N  L  C  S  F  S  K  F  C  L  K  F  E  I  E  L  L  F  S  H  I  V  L  R  L  Q  T  *  I  *  V  F  E  I  F  S  F  V  *  T  Y  I  *  P  G  K  S  *  S  F  V  C  G  C  A  K  N  A  T  F  W  N  L  F  H  D  K  M  D  I  R  *  *  I  F  E  I  *  S  *  N  L  Y  G  Q  T  L  A  M  G  K  R  S  N  L  V  F  E  T  A  K  F  I  N  L  C  F  L  F  Q  V  Y  S  T  F  N  C  I  I  E  P  Q  S  I  L  C  F  A  L  Q  L  L  L  I  N  V  L  G  *  C  I  Y  R  P  A  * </second_frame>
            <third_frame>   S  T  S  L  S  Q  I  S  Q  L  T  A  Y  *  K  S  *  I  S  S  L  L  K  T  C  E  F  S  H  G  N  *  S  S  T  S  F  T  F  L  E  N  F  C  F  R  I  L  S  F  L  L  *  *  K  *  F  V  F  F  *  V  *  *  V  L  H  G  K  R  L  Y  A  M  K  S  A  L  *  A  W  L  V  D  T  A  I  Y  V  L  F  P  N  F  V  S  N  L  K  L  S  S  C  L  A  I  *  F  *  G  C  K  L  E  F  E  F  L  K  F  L  V  L  F  R  H  T  F  D  L  E  K  V  E  V  L  C  V  D  V  P  K  T  Q  L  F  G  I  Y  F  T  I  K  W  I  F  D  D  K  F  L  K  F  N  P  K  I  Y  M  V  K  L  *  L  W  E  K  G  Q  I  *  Y  L  R  Q  P  S  S  L  I  F  V  F  F  F  K  Y  I  V  L  L  I  A  *  L  N  L  K  A  Y  C  V  L  R  F  N  Y  C  *  *  M  F  W  D  S  V  Y  I  D  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0074O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="88582" PGL_stop="89543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88582" e_stop="88787"/>
            <exon e_start="88903" e_stop="88968"/>
            <exon e_start="89103" e_stop="89191"/>
            <exon e_start="89401" e_stop="89543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="88582" e_stop="88787" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.963">
            <gDNA_intron_boundary i_start="88788" i_stop="88902" i_length="115"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88903" e_stop="88968" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.984">
            <gDNA_intron_boundary i_start="88969" i_stop="89102" i_length="134"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89103" e_stop="89191" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.982">
            <gDNA_intron_boundary i_start="89192" i_stop="89400" i_length="209"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89401" e_stop="89543" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88582" stop="88787"/>
              <exon start="88903" stop="88968"/>
              <exon start="89103" stop="89191"/>
              <exon start="89401" stop="89543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316783" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTGTTTCATCTGGATCGGAGATCGGAATTCTCCTTCTAGTGTTCGCCTTCACCGGCATTCCGATCTCCGGCAGTTCACAATGATCAACATTCCATACTTGACTGCCTTGTCCACCTATTTCAGCTATGGCTTGCTCTTTGCCTTTGGCCAATTTCGTGATTTCTTCAGAAAAATATTCGATTGGTGGAACGCCAGTAATCTTCAG : GGATATGCACCTATCTGCTTAGGACTAGAAGATTTCTATATTCGTCGGTTGTATCTTCGCATTCAG : GATTGTTTTGGAAGGCCAATATGCAGTCCTCCTGATGCTTGGTTTGACGTGGTAGAGCGTGTATCCAATGATAATAACAAGACACTAAA : TCGGACCACAAAAGTTTCAAGGTGCCTGAACTTGGGATCATATAATTACCTTGGTTTTGCTTCTTCTGATGAATATTGTACCCCGCGTGTTATTGAGTCTTTGAAAACATTTTCCGCAAGCACATGCAGTACCCGTGTTGATG</gDNA_template>
            <first_frame> S  V  S  S  G  S  E  I  G  I  L  L  L  V  F  A  F  T  G  I  P  I  S  G  S  S  Q  *  S  T  F  H  T  *  L  P  C  P  P  I  S  A  M  A  C  S  L  P  L  A  N  F  V  I  S  S  E  K  Y  S  I  G  G  T  P  V  I  F  R :   D  M  H  L  S  A  *  D  *  K  I  S  I  F  V  G  C  I  F  A  F  R :   I  V  L  E  G  Q  Y  A  V  L  L  M  L  G  L  T  W  *  S  V  Y  P  M  I  I  T  R  H  *   : I  G  P  Q  K  F  Q  G  A  *  T  W  D  H  I  I  T  L  V  L  L  L  L  M  N  I  V  P  R  V  L  L  S  L  *  K  H  F  P  Q  A  H  A  V  P  V  L  M </first_frame>
            <second_frame>  L  F  H  L  D  R  R  S  E  F  S  F  *  C  S  P  S  P  A  F  R  S  P  A  V  H  N  D  Q  H  S  I  L  D  C  L  V  H  L  F  Q  L  W  L  A  L  C  L  W  P  I  S  *  F  L  Q  K  N  I  R  L  V  E  R  Q  *  S  S   : G  I  C  T  Y  L  L  R  T  R  R  F  L  Y  S  S  V  V  S  S  H  S   : G  L  F  W  K  A  N  M  Q  S  S  *  C  L  V  *  R  G  R  A  C  I  Q  *  *  *  Q  D  T  K  :  S  D  H  K  S  F  K  V  P  E  L  G  I  I  *  L  P  W  F  C  F  F  *  *  I  L  Y  P  A  C  Y  *  V  F  E  N  I  F  R  K  H  M  Q  Y  P  C  *   </second_frame>
            <third_frame>   C  F  I  W  I  G  D  R  N  S  P  S  S  V  R  L  H  R  H  S  D  L  R  Q  F  T  M  I  N  I  P  Y  L  T  A  L  S  T  Y  F  S  Y  G  L  L  F  A  F  G  Q  F  R  D  F  F  R  K  I  F  D  W  W  N  A  S  N  L  Q  :  G  Y  A  P  I  C  L  G  L  E  D  F  Y  I  R  R  L  Y  L  R  I  Q  :  D  C  F  G  R  P  I  C  S  P  P  D  A  W  F  D  V  V  E  R  V  S  N  D  N  N  K  T  L  N :   R  T  T  K  V  S  R  C  L  N  L  G  S  Y  N  Y  L  G  F  A  S  S  D  E  Y  C  T  P  R  V  I  E  S  L  K  T  F  S  A  S  T  C  S  T  R  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88584" stop="88787"/>
                    <exon start="88903" stop="88968"/>
                    <exon start="89103" stop="89191"/>
                    <exon start="89401" stop="89542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CFIWIGDRNSPSSVRLHRHSDLRQFTMINIPYLTALSTYFSYGLLFAFGQFRDFFRKIFDWWNASNLQGYAPICLGLEDFYIRRLYLRIQDCFGRPICSPPDAWFDVVERVSNDNNKTLNRTTKVSRCLNLGSYNYLGFASSDEYCTPRVIESLKTFSASTCSTRVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="90080" PGL_stop="92822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90080" e_stop="90179"/>
            <exon e_start="90360" e_stop="90521"/>
            <exon e_start="91250" e_stop="91376"/>
            <exon e_start="91491" e_stop="91657"/>
            <exon e_start="91778" e_stop="91885"/>
            <exon e_start="92205" e_stop="92822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.980"/>
          <exon-intron don_prob="0.980" acc_prob="0.841" e_score="0.981"/>
          <exon-intron don_prob="0.915" acc_prob="0.873" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="0.994"/>
          <exon-intron don_prob="0.993" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="90080" e_stop="90179" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="90180" i_stop="90359" i_length="180"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="90360" e_stop="90521" e_length="162"/>
          </exon>
          <intron i_serial="2" don_prob="0.980" acc_prob="0.841">
            <gDNA_intron_boundary i_start="90522" i_stop="91249" i_length="728"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="91250" e_stop="91376" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.915" acc_prob="0.873">
            <gDNA_intron_boundary i_start="91377" i_stop="91490" i_length="114"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="91491" e_stop="91657" e_length="167"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="91658" i_stop="91777" i_length="120"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="91778" e_stop="91885" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.993">
            <gDNA_intron_boundary i_start="91886" i_stop="92204" i_length="319"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="92205" e_stop="92822" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90080" stop="90179"/>
              <exon start="90360" stop="90521"/>
              <exon start="91250" stop="91376"/>
              <exon start="91491" stop="91657"/>
              <exon start="91778" stop="91885"/>
              <exon start="92205" stop="92332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316781" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92232" stop="92822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344126" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCATGGAAGAAGATAATCGTTGTGGTCGAGGGCATATATAGTATGGAAGGGGAGCTTTGCCAACTGCCAGAGATTGTTGCGATATGCAAGAAGTACAAG : GCATATGTGTATCTGGATGAGGCTCATAGCATTGGAGCAGTTGGAAGAACTGGAAGGGGGGTCTGTGAGCTCTTAGGAGTTGACACTGCAGATGTGGAGATTATGATGGGAACTTTTACAAAGTCATTTGGATCATGTGGGGGTTACATTGCAGGATCAAAG : GAACTTATTGAATATCTGAAGTACACTTGCCCAGCTCATCTTTACGCCACATCAATATCACCTCCAGCTGCCCAACAAATAATTTCTTCTATCAATGTTATACTTGGTGAAGATGGTTCTAGTAGAG : GGGCTCAGAAGCTAGCACAGATACGTGAAAATAGCAACTTTTTCCGCTCTGAATTACAGAAGATGGGCTTTGAGGTTCTTGGGGACAATGATTCTCCAGTCATGCCCATTATGCTCTACAATCCAGCAAAAATACCTGCTTTTTCACGGGAGTGTCTCAAACGAAAA : GTGGCAGTAGTGACAGTTGCTTTTCCAGCTACTCCTTTACTACTGGCCAGAGCACGAATTTGCATATCTGCTGCTCACTCAAGGGATGATCTTATTAAAGCGCTCGAG : GTTATCAGCGAAGTTGGTGATCTAGTGGGCATTAAATACTTCCCTGTCGAGCCCAACAAAGAGCAGCTAGAAGCAAACAGAGTCAAGCTGGAATGAGTTAAGTTTCAGAATTGATTCAATCAAGCATGATACGTCTTTAGGATGAGAAGTTTTGACACTTTTTAACTTTTTGTATACAAAGTGTTGTCACGTACTACATGGGATAGTCTTATCTTTCTCTTATGCTTCACGAAAGGGATGCTGCAAAGTGCCAAGTCGTGAATATTTTGTTCTCTCAAAACAAAAATAGAGAAATGACATGGAAAAAGTAAATCTTCAATATTGACTCACAAATTGCTGGAGGAAACTAAAGAGTAGTAGTGAAAAGACAATAGCAACACTGTAACAAGAAGGGCAAGAAGCAAACTTGCCTCTCTGTATTCACTGTCAAGATGAGAAGTTCAAAAACATGAACGTCAATCCGAAAGATCTTTGAATCATATAATTCAGCTTGCTTTGCTTTGTTTTTGTCTTTTATGTTATTTGCTAGCATTAGTTTCTGAAACTTGTTAAACGGTTAAAGAATGGACTTTCAGCTAATATGAAGGTTTGCAATGCTTGTATACACAGTTTTAGTAG</gDNA_template>
            <first_frame> T  M  E  E  D  N  R  C  G  R  G  H  I  *  Y  G  R  G  A  L  P  T  A  R  D  C  C  D  M  Q  E  V  Q   : G  I  C  V  S  G  *  G  S  *  H  W  S  S  W  K  N  W  K  G  G  L  *  A  L  R  S  *  H  C  R  C  G  D  Y  D  G  N  F  Y  K  V  I  W  I  M  W  G  L  H  C  R  I  K   : G  T  Y  *  I  S  E  V  H  L  P  S  S  S  L  R  H  I  N  I  T  S  S  C  P  T  N  N  F  F  Y  Q  C  Y  T  W  *  R  W  F  *  *  R :   G  S  E  A  S  T  D  T  *  K  *  Q  L  F  P  L  *  I  T  E  D  G  L  *  G  S  W  G  Q  *  F  S  S  H  A  H  Y  A  L  Q  S  S  K  N  T  C  F  F  T  G  V  S  Q  T  K   : S  G  S  S  D  S  C  F  S  S  Y  S  F  T  T  G  Q  S  T  N  L  H  I  C  C  S  L  K  G  *  S  Y  *  S  A  R   : G  Y  Q  R  S  W  *  S  S  G  H  *  I  L  P  C  R  A  Q  Q  R  A  A  R  S  K  Q  S  Q  A  G  M  S  *  V  S  E  L  I  Q  S  S  M  I  R  L  *  D  E  K  F  *  H  F  L  T  F  C  I  Q  S  V  V  T  Y  Y  M  G  *  S  Y  L  S  L  M  L  H  E  R  D  A  A  K  C  Q  V  V  N  I  L  F  S  Q  N  K  N  R  E  M  T  W  K  K  *  I  F  N  I  D  S  Q  I  A  G  G  N  *  R  V  V  V  K  R  Q  *  Q  H  C  N  K  K  G  K  K  Q  T  C  L  S  V  F  T  V  K  M  R  S  S  K  T  *  T  S  I  R  K  I  F  E  S  Y  N  S  A  C  F  A  L  F  L  S  F  M  L  F  A  S  I  S  F  *  N  L  L  N  G  *  R  M  D  F  Q  L  I  *  R  F  A  M  L  V  Y  T  V  L  V  </first_frame>
            <second_frame>  P  W  K  K  I  I  V  V  V  E  G  I  Y  S  M  E  G  E  L  C  Q  L  P  E  I  V  A  I  C  K  K  Y  K  :  A  Y  V  Y  L  D  E  A  H  S  I  G  A  V  G  R  T  G  R  G  V  C  E  L  L  G  V  D  T  A  D  V  E  I  M  M  G  T  F  T  K  S  F  G  S  C  G  G  Y  I  A  G  S  K  :  E  L  I  E  Y  L  K  Y  T  C  P  A  H  L  Y  A  T  S  I  S  P  P  A  A  Q  Q  I  I  S  S  I  N  V  I  L  G  E  D  G  S  S  R   : G  A  Q  K  L  A  Q  I  R  E  N  S  N  F  F  R  S  E  L  Q  K  M  G  F  E  V  L  G  D  N  D  S  P  V  M  P  I  M  L  Y  N  P  A  K  I  P  A  F  S  R  E  C  L  K  R  K  :  V  A  V  V  T  V  A  F  P  A  T  P  L  L  L  A  R  A  R  I  C  I  S  A  A  H  S  R  D  D  L  I  K  A  L  E  :  V  I  S  E  V  G  D  L  V  G  I  K  Y  F  P  V  E  P  N  K  E  Q  L  E  A  N  R  V  K  L  E  *  V  K  F  Q  N  *  F  N  Q  A  *  Y  V  F  R  M  R  S  F  D  T  F  *  L  F  V  Y  K  V  L  S  R  T  T  W  D  S  L  I  F  L  L  C  F  T  K  G  M  L  Q  S  A  K  S  *  I  F  C  S  L  K  T  K  I  E  K  *  H  G  K  S  K  S  S  I  L  T  H  K  L  L  E  E  T  K  E  *  *  *  K  D  N  S  N  T  V  T  R  R  A  R  S  K  L  A  S  L  Y  S  L  S  R  *  E  V  Q  K  H  E  R  Q  S  E  R  S  L  N  H  I  I  Q  L  A  L  L  C  F  C  L  L  C  Y  L  L  A  L  V  S  E  T  C  *  T  V  K  E  W  T  F  S  *  Y  E  G  L  Q  C  L  Y  T  Q  F  *  * </second_frame>
            <third_frame>   H  G  R  R  *  S  L  W  S  R  A  Y  I  V  W  K  G  S  F  A  N  C  Q  R  L  L  R  Y  A  R  S  T  R :   H  M  C  I  W  M  R  L  I  A  L  E  Q  L  E  E  L  E  G  G  S  V  S  S  *  E  L  T  L  Q  M  W  R  L  *  W  E  L  L  Q  S  H  L  D  H  V  G  V  T  L  Q  D  Q  R :   N  L  L  N  I  *  S  T  L  A  Q  L  I  F  T  P  H  Q  Y  H  L  Q  L  P  N  K  *  F  L  L  S  M  L  Y  L  V  K  M  V  L  V  E  :  G  L  R  S  *  H  R  Y  V  K  I  A  T  F  S  A  L  N  Y  R  R  W  A  L  R  F  L  G  T  M  I  L  Q  S  C  P  L  C  S  T  I  Q  Q  K  Y  L  L  F  H  G  S  V  S  N  E  K :   W  Q  *  *  Q  L  L  F  Q  L  L  L  Y  Y  W  P  E  H  E  F  A  Y  L  L  L  T  Q  G  M  I  L  L  K  R  S  R :   L  S  A  K  L  V  I  *  W  A  L  N  T  S  L  S  S  P  T  K  S  S  *  K  Q  T  E  S  S  W  N  E  L  S  F  R  I  D  S  I  K  H  D  T  S  L  G  *  E  V  L  T  L  F  N  F  L  Y  T  K  C  C  H  V  L  H  G  I  V  L  S  F  S  Y  A  S  R  K  G  C  C  K  V  P  S  R  E  Y  F  V  L  S  K  Q  K  *  R  N  D  M  E  K  V  N  L  Q  Y  *  L  T  N  C  W  R  K  L  K  S  S  S  E  K  T  I  A  T  L  *  Q  E  G  Q  E  A  N  L  P  L  C  I  H  C  Q  D  E  K  F  K  N  M  N  V  N  P  K  D  L  *  I  I  *  F  S  L  L  C  F  V  F  V  F  Y  V  I  C  *  H  *  F  L  K  L  V  K  R  L  K  N  G  L  S  A  N  M  K  V  C  N  A  C  I  H  S  F  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90081" stop="90179"/>
                    <exon start="90360" stop="90521"/>
                    <exon start="91250" stop="91376"/>
                    <exon start="91491" stop="91657"/>
                    <exon start="91778" stop="91885"/>
                    <exon start="92205" stop="92300"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PWKKIIVVVEGIYSMEGELCQLPEIVAICKKYKAYVYLDEAHSIGAVGRTGRGVCELLGVDTADVEIMMGTFTKSFGSCGGYIAGSKELIEYLKYTCPAHLYATSISPPAAQQIISSINVILGEDGSSRGAQKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKRKVAVVTVAFPATPLLLARARICISAAHSRDDLIKALEVISEVGDLVGIKYFPVEPNKEQLEANRVKLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="113422" PGL_stop="116579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113422" e_stop="113587"/>
            <exon e_start="115205" e_stop="115857"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="113422" e_stop="113587" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113588" i_stop="115204" i_length="1617"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="115205" e_stop="115857" e_length="653"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113422" stop="113587"/>
              <exon start="115205" stop="115785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113428" stop="113587"/>
              <exon start="115205" stop="115857"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338286" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTTTGTTATCTACACATTAGTTTTCTCTCTCTAGGAATCACTTTCTCTCTCTAATCTGATATAGTAGTAGTTGTCTTCTCTCTCCGTCTCATTTGCGTTTTGTAGGTTACGGCGGTGGTTGGTTGGAGAAGGGCGGAAATTGGTGTACCGGCGGTGATTTTGAG : TTGCTATCATGGTGCGGAAGAGGAGAACTGATGTTCCTGGTGGTGCTGAGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAGCAGTATCAACGAGGGGGAGGACAACCCCAGCGCCGTGGTGGTATAGGGGGCCGTGGGGCACCTTCTGGTGGCTCTTCTAGGCCACCAGTTCCCGAGCTGCACCAAGCAACTGAGACTCCACATCAGCCCGTACCATATGGAAGACCAGCAGAAACATACTCAGAGGCTGGCTCCTCATCTCAGCCACCTGAACCAATGACACATCAAGTTACTCAGCAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT</gDNA_template>
            <first_frame> P  F  V  I  Y  T  L  V  F  S  L  *  E  S  L  S  L  S  N  L  I  *  *  *  L  S  S  L  S  V  S  F  A  F  C  R  L  R  R  W  L  V  G  E  G  R  K  L  V  Y  R  R  *  F  *   : V  A  I  M  V  R  K  R  R  T  D  V  P  G  G  A  E  S  S  E  S  H  E  T  G  G  G  R  G  G  V  Q  R  P  P  P  Q  Q  Q  Q  G  G  G  R  G  S  G  P  Q  R  G  G  Y  G  G  R  G  G  G  G  A  P  R  G  G  I  A  P  Q  Q  S  Y  G  G  P  P  E  Y  Y  Q  Q  G  R  G  T  Q  Q  Y  Q  R  G  G  G  Q  P  Q  R  R  G  G  I  G  G  R  G  A  P  S  G  G  S  S  R  P  P  V  P  E  L  H  Q  A  T  E  T  P  H  Q  P  V  P  Y  G  R  P  A  E  T  Y  S  E  A  G  S  S  S  Q  P  P  E  P  M  T  H  Q  V  T  Q  Q  F  Q  Q  I  A  V  Q  P  E  A  G  A  S  Q  A  I  P  P  V  S  S  K  S  M  R  F  P  L  R  P  G  K  G  S  N  G  T  R  C  I  V  K  A  N  H  F  F  A  E  L  P  D  K  D  L  H  Q  Y  D </first_frame>
            <second_frame>  L  L  L  S  T  H  *  F  S  L  S  R  N  H  F  L  S  L  I  *  Y  S  S  S  C  L  L  S  P  S  H  L  R  F  V  G  Y  G  G  G  W  L  E  K  G  G  N  W  C  T  G  G  D  F  E  :  L  L  S  W  C  G  R  G  E  L  M  F  L  V  V  L  R  A  L  S  P  T  K  L  E  G  D  E  V  V  S  N  A  H  H  H  N  S  N  K  V  E  E  E  A  R  D  L  S  V  E  D  M  V  A  V  V  V  E  E  L  L  V  V  E  *  P  L  N  S  H  M  V  D  P  P  S  T  I  N  R  A  G  E  L  S  S  I  N  E  G  E  D  N  P  S  A  V  V  V  *  G  A  V  G  H  L  L  V  A  L  L  G  H  Q  F  P  S  C  T  K  Q  L  R  L  H  I  S  P  Y  H  M  E  D  Q  Q  K  H  T  Q  R  L  A  P  H  L  S  H  L  N  Q  *  H  I  K  L  L  S  S  S  S  K  L  L  C  N  Q  K  Q  V  H  P  K  Q  F  H  L  Y  R  A  S  Q  *  G  F  H  F  G  L  E  R  V  V  M  E  L  D  A  L  L  R  P  I  T  S  L  P  S  Y  L  T  K  T  C  T  S  M   </second_frame>
            <third_frame>   F  C  Y  L  H  I  S  F  L  S  L  G  I  T  F  S  L  *  S  D  I  V  V  V  V  F  S  L  R  L  I  C  V  L  *  V  T  A  V  V  G  W  R  R  A  E  I  G  V  P  A  V  I  L  S :   C  Y  H  G  A  E  E  E  N  *  C  S  W  W  C  *  E  L  *  V  P  R  N  W  R  G  T  R  W  C  P  T  P  T  T  T  T  A  T  R  W  R  K  R  L  G  T  S  A  W  R  I  W  W  P  W  W  W  R  S  S  S  W  W  N  S  P  S  T  V  I  W  W  T  P  R  V  L  S  T  G  Q  G  N  S  A  V  S  T  R  G  R  T  T  P  A  P  W  W  Y  R  G  P  W  G  T  F  W  W  L  F  *  A  T  S  S  R  A  A  P  S  N  *  D  S  T  S  A  R  T  I  W  K  T  S  R  N  I  L  R  G  W  L  L  I  S  A  T  *  T  N  D  T  S  S  Y  S  A  V  P  A  N  C  C  A  T  R  S  R  C  I  P  S  N  S  T  C  I  E  Q  V  N  E  V  S  T  S  A  W  K  G  *  *  W  N  *  M  H  C  *  G  Q  S  L  L  C  R  V  T  *  Q  R  L  A  P  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113587" stop="115857"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VAIMVRKRRTDVPGGAESSESHETGGGRGGVQRPPPQQQQGGGRGSGPQRGGYGGRGGGGAPRGGIAPQQSYGGPPEYYQQGRGTQQYQRGGGQPQRRGGIGGRGAPSGGSSRPPVPELHQATETPHQPVPYGRPAETYSEAGSSSQPPEPMTHQVTQQFQQIAVQPEAGASQAIPPVSSKSMRFPLRPGKGSNGTRCIVKANHFFAELPDKDLHQYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="115253" e_stop="115461"/>
            <exon e_start="115678" e_stop="115857"/>
            <exon e_start="115961" e_stop="116169"/>
            <exon e_start="116250" e_stop="116399"/>
            <exon e_start="116508" e_stop="116579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.926" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="115253" e_stop="115461" e_length="209"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="115462" i_stop="115677" i_length="216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="115678" e_stop="115857" e_length="180"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.926">
            <gDNA_intron_boundary i_start="115858" i_stop="115960" i_length="103"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115961" e_stop="116169" e_length="209"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116170" i_stop="116249" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="116250" e_stop="116399" e_length="150"/>
          </exon>
          <intron i_serial="4" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116400" i_stop="116507" i_length="108"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="116508" e_stop="116579" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115253" stop="115461"/>
              <exon start="115678" stop="115857"/>
              <exon start="115961" stop="116169"/>
              <exon start="116250" stop="116399"/>
              <exon start="116508" stop="116579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGCTCTGAGTCCCACGAAACTGGAGGGGGACGAGGTGGTGTCCAACGCCCACCACCACAACAGCAACAAGGTGGAGGAAGAGGCTCGGGACCTCAGCGTGGAGGATATGGTGGCCGTGGTGGTGGAGGAGCTCCTCGTGGTGGAATAGCCCCTCAACAGTCATATGGTGGACCCCCCGAGTACTATCAACAGGGCAGGGGAACTCAG : CAGTTCCAGCAAATTGCTGTGCAACCAGAAGCAGGTGCATCCCAAGCAATTCCACCTGTATCGAGCAAGTCAATGAGGTTTCCACTTCGGCCTGGAAAGGGTAGTAATGGAACTAGATGCATTGTTAAGGCCAATCACTTCTTTGCCGAGTTACCTGACAAAGACTTGCACCAGTATGAT : GTTTCAATTACACCAGAGGTAGCTTCCCGAGGTGTCAACCGCGCTGTCATGGAGCAGCTTGTAAAGCTTTACAGAGAATCCCATCTTGGGAAGAGGCTTCCAGCCTATGATGGAAGAAAAAGTTTGTACACCGCAGGGCCCCTCCCTTTTGTTCAAAAAGATTTTAAAATCACACTTCTTGATGATGATGATGGACCCGGTGGTGCTAG : GCGAGAAAGGGAGTTTAAAGTTGTGATCAAGCTGGCTGCTCGTGCTGATCTTCATCATTTAGGGATGTTCTTACAAGGGAGGCAGGCGGATGCACCCCAGGAGGCCCTACAGGTTCTTGATATTGTTCTGCGTGAGTTGCCAACAAGTAG : GTATTGTCCCGTGGGCCGATCATTCTATTCCCCTGATTTAGGACGAAGACAACCACTAGGTGAAGGTTTGGA</gDNA_template>
            <first_frame> R  A  L  S  P  T  K  L  E  G  D  E  V  V  S  N  A  H  H  H  N  S  N  K  V  E  E  E  A  R  D  L  S  V  E  D  M  V  A  V  V  V  E  E  L  L  V  V  E  *  P  L  N  S  H  M  V  D  P  P  S  T  I  N  R  A  G  E  L  S :   S  S  S  K  L  L  C  N  Q  K  Q  V  H  P  K  Q  F  H  L  Y  R  A  S  Q  *  G  F  H  F  G  L  E  R  V  V  M  E  L  D  A  L  L  R  P  I  T  S  L  P  S  Y  L  T  K  T  C  T  S  M  M :   F  Q  L  H  Q  R  *  L  P  E  V  S  T  A  L  S  W  S  S  L  *  S  F  T  E  N  P  I  L  G  R  G  F  Q  P  M  M  E  E  K  V  C  T  P  Q  G  P  S  L  L  F  K  K  I  L  K  S  H  F  L  M  M  M  M  D  P  V  V  L   : G  E  K  G  S  L  K  L  *  S  S  W  L  L  V  L  I  F  I  I  *  G  C  S  Y  K  G  G  R  R  M  H  P  R  R  P  Y  R  F  L  I  L  F  C  V  S  C  Q  Q  V   : G  I  V  P  W  A  D  H  S  I  P  L  I  *  D  E  D  N  H  *  V  K  V  W  </first_frame>
            <second_frame>  E  L  *  V  P  R  N  W  R  G  T  R  W  C  P  T  P  T  T  T  T  A  T  R  W  R  K  R  L  G  T  S  A  W  R  I  W  W  P  W  W  W  R  S  S  S  W  W  N  S  P  S  T  V  I  W  W  T  P  R  V  L  S  T  G  Q  G  N  S   : A  V  P  A  N  C  C  A  T  R  S  R  C  I  P  S  N  S  T  C  I  E  Q  V  N  E  V  S  T  S  A  W  K  G  *  *  W  N  *  M  H  C  *  G  Q  S  L  L  C  R  V  T  *  Q  R  L  A  P  V  *   : C  F  N  Y  T  R  G  S  F  P  R  C  Q  P  R  C  H  G  A  A  C  K  A  L  Q  R  I  P  S  W  E  E  A  S  S  L  *  W  K  K  K  F  V  H  R  R  A  P  P  F  C  S  K  R  F  *  N  H  T  S  *  *  *  *  W  T  R  W  C  *  :  A  R  K  G  V  *  S  C  D  Q  A  G  C  S  C  *  S  S  S  F  R  D  V  L  T  R  E  A  G  G  C  T  P  G  G  P  T  G  S  *  Y  C  S  A  *  V  A  N  K  *  :  V  L  S  R  G  P  I  I  L  F  P  *  F  R  T  K  T  T  T  R  *  R  F  G </second_frame>
            <third_frame>   S  S  E  S  H  E  T  G  G  G  R  G  G  V  Q  R  P  P  P  Q  Q  Q  Q  G  G  G  R  G  S  G  P  Q  R  G  G  Y  G  G  R  G  G  G  G  A  P  R  G  G  I  A  P  Q  Q  S  Y  G  G  P  P  E  Y  Y  Q  Q  G  R  G  T  Q  :  Q  F  Q  Q  I  A  V  Q  P  E  A  G  A  S  Q  A  I  P  P  V  S  S  K  S  M  R  F  P  L  R  P  G  K  G  S  N  G  T  R  C  I  V  K  A  N  H  F  F  A  E  L  P  D  K  D  L  H  Q  Y  D  :  V  S  I  T  P  E  V  A  S  R  G  V  N  R  A  V  M  E  Q  L  V  K  L  Y  R  E  S  H  L  G  K  R  L  P  A  Y  D  G  R  K  S  L  Y  T  A  G  P  L  P  F  V  Q  K  D  F  K  I  T  L  L  D  D  D  D  G  P  G  G  A  R :   R  E  R  E  F  K  V  V  I  K  L  A  A  R  A  D  L  H  H  L  G  M  F  L  Q  G  R  Q  A  D  A  P  Q  E  A  L  Q  V  L  D  I  V  L  R  E  L  P  T  S  R :   Y  C  P  V  G  R  S  F  Y  S  P  D  L  G  R  R  Q  P  L  G  E  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115255" stop="115461"/>
                    <exon start="115678" stop="115857"/>
                    <exon start="115961" stop="116169"/>
                    <exon start="116250" stop="116399"/>
                    <exon start="116508" stop="116577"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSESHETGGGRGGVQRPPPQQQQGGGRGSGPQRGGYGGRGGGGAPRGGIAPQQSYGGPPEYYQQGRGTQQFQQIAVQPEAGASQAIPPVSSKSMRFPLRPGKGSNGTRCIVKANHFFAELPDKDLHQYDVSITPEVASRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFVQKDFKITLLDDDDGPGGARREREFKVVIKLAARADLHHLGMFLQGRQADAPQEALQVLDIVLRELPTSRYCPVGRSFYSPDLGRRQPLGEGL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="116615" PGL_stop="124349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="116615" e_stop="116641"/>
            <exon e_start="116788" e_stop="116897"/>
            <exon e_start="117172" e_stop="117278"/>
            <exon e_start="117508" e_stop="117646"/>
            <exon e_start="117729" e_stop="117845"/>
            <exon e_start="118570" e_stop="118677"/>
            <exon e_start="118835" e_stop="118906"/>
            <exon e_start="119665" e_stop="119787"/>
            <exon e_start="119883" e_stop="120048"/>
            <exon e_start="120139" e_stop="120398"/>
            <exon e_start="120496" e_stop="120638"/>
            <exon e_start="120750" e_stop="120812"/>
            <exon e_start="120899" e_stop="120962"/>
            <exon e_start="121107" e_stop="121242"/>
            <exon e_start="121325" e_stop="121398"/>
            <exon e_start="121481" e_stop="121575"/>
            <exon e_start="121646" e_stop="121677"/>
            <exon e_start="121834" e_stop="122238"/>
            <exon e_start="124336" e_stop="124349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.961" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.453" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.807" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.583" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.982" e_score="0.988"/>
          <exon-intron don_prob="0.974" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.501" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.751" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.768" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.940" e_score="0.989"/>
          <exon-intron don_prob="0.814" acc_prob="0.868" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.830" e_score="0.995"/>
          <exon-only e_score="0.643"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="116615" e_stop="116641" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.961" acc_prob="0.975">
            <gDNA_intron_boundary i_start="116642" i_stop="116787" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116788" e_stop="116897" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.453" acc_prob="0.980">
            <gDNA_intron_boundary i_start="116898" i_stop="117171" i_length="274"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="117172" e_stop="117278" e_length="107"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.969">
            <gDNA_intron_boundary i_start="117279" i_stop="117507" i_length="229"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="117508" e_stop="117646" e_length="139"/>
          </exon>
          <intron i_serial="4" don_prob="0.934" acc_prob="0.993">
            <gDNA_intron_boundary i_start="117647" i_stop="117728" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="117729" e_stop="117845" e_length="117"/>
          </exon>
          <intron i_serial="5" don_prob="0.807" acc_prob="0.968">
            <gDNA_intron_boundary i_start="117846" i_stop="118569" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="118570" e_stop="118677" e_length="108"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="118678" i_stop="118834" i_length="157"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="118835" e_stop="118906" e_length="72"/>
          </exon>
          <intron i_serial="7" don_prob="0.583" acc_prob="0.799">
            <gDNA_intron_boundary i_start="118907" i_stop="119664" i_length="758"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="119665" e_stop="119787" e_length="123"/>
          </exon>
          <intron i_serial="8" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="119788" i_stop="119882" i_length="95"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="119883" e_stop="120048" e_length="166"/>
          </exon>
          <intron i_serial="9" don_prob="0.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="120049" i_stop="120138" i_length="90"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="120139" e_stop="120398" e_length="260"/>
          </exon>
          <intron i_serial="10" don_prob="0.974" acc_prob="0.979">
            <gDNA_intron_boundary i_start="120399" i_stop="120495" i_length="97"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="120496" e_stop="120638" e_length="143"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.987">
            <gDNA_intron_boundary i_start="120639" i_stop="120749" i_length="111"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="120750" e_stop="120812" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="0.984" acc_prob="0.501">
            <gDNA_intron_boundary i_start="120813" i_stop="120898" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="120899" e_stop="120962" e_length="64"/>
          </exon>
          <intron i_serial="13" don_prob="0.999" acc_prob="0.751">
            <gDNA_intron_boundary i_start="120963" i_stop="121106" i_length="144"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="121107" e_stop="121242" e_length="136"/>
          </exon>
          <intron i_serial="14" don_prob="0.995" acc_prob="0.768">
            <gDNA_intron_boundary i_start="121243" i_stop="121324" i_length="82"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="121325" e_stop="121398" e_length="74"/>
          </exon>
          <intron i_serial="15" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121399" i_stop="121480" i_length="82"/>
          </intron>
          <exon e_serial="16" e_score="0.989">
            <gDNA_exon_boundary e_start="121481" e_stop="121575" e_length="95"/>
          </exon>
          <intron i_serial="16" don_prob="0.997" acc_prob="0.940">
            <gDNA_intron_boundary i_start="121576" i_stop="121645" i_length="70"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="121646" e_stop="121677" e_length="32"/>
          </exon>
          <intron i_serial="17" don_prob="0.814" acc_prob="0.868">
            <gDNA_intron_boundary i_start="121678" i_stop="121833" i_length="156"/>
          </intron>
          <exon e_serial="18" e_score="0.995">
            <gDNA_exon_boundary e_start="121834" e_stop="122238" e_length="405"/>
          </exon>
          <intron i_serial="18" don_prob="0.000" acc_prob="0.830">
            <gDNA_intron_boundary i_start="122239" i_stop="124335" i_length="2097"/>
          </intron>
          <exon e_serial="19" e_score="0.643">
            <gDNA_exon_boundary e_start="124336" e_stop="124349" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="116615" stop="116641"/>
              <exon start="116788" stop="116897"/>
              <exon start="117172" stop="117278"/>
              <exon start="117508" stop="117646"/>
              <exon start="117729" stop="117845"/>
              <exon start="118570" stop="118677"/>
              <exon start="118835" stop="118906"/>
              <exon start="119665" stop="119787"/>
              <exon start="119883" stop="120048"/>
              <exon start="120139" stop="120398"/>
              <exon start="120496" stop="120638"/>
              <exon start="120750" stop="120812"/>
              <exon start="120899" stop="120962"/>
              <exon start="121107" stop="121242"/>
              <exon start="121325" stop="121398"/>
              <exon start="121481" stop="121575"/>
              <exon start="121646" stop="121677"/>
              <exon start="121834" stop="121861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317174" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121574" stop="121575"/>
              <exon start="121646" stop="121677"/>
              <exon start="121834" stop="122238"/>
              <exon start="124336" stop="124349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323103" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCAGATGGGATTATCCCTGAATATTG : ATATGTCTTCCACAGCATTCATTGAGCCACTGCCGGTCATTGAATTTGTGAGCCAGCTTCTGAATCGGGATATCTCTTCTAGACCATTGTCTGATGCTGATCGGGTTAAG : ATAAAGAAGGCCCTGAGAGGTGTAAAGGTGGAGGTCACTCATCGTGGGAATATGAGGAGGAAGTACCGCATATCTGGTTTGACATCTCAAGCAACAAGAGAGTTGAC : TTTCCCTGTAGATGAAAGAGGTACCATGAAAGCTGTTGTGGAATACTTTCGAGAAACGTATGGTTTTGTTATTCAGCATACTCAGTTGCCTTGTCTTCAAGTTGGAAATACACAAAGGCCAAATTATTTGCCTATGGAG : GTCTGCAAGATTGTGGAGGGGCAGAGGTACTCCAAACGCTTGAATGAGAGGCAGATAACAGCACTTCTGAAAGTGACCTGCCAGCGTCCTCAAGAGAGAGAGAATGATATTCTTCAG : ACTGTTCGTCACAATGCTTATTCAGATGACCCATATGCGAGGGAATTTGGTATTAAGATTAGCGAGAAGCTTGCTCAAGTTGAGGCTCGCATTTTGCCTGCACCTTGG : CTTAAATACCATGATACAGGTCGAGAAAAAGACTGTCTACCACAAGTGGGCCAATGGAATATGATGAATAAG : AAAATGGTAAATGGAGGAACAGTGAACAACTGGATCTGTATAAATTTTTCTCGCAATGTGCAAGACAGTGTTGCCCGGGGATTTTGTTCTGAGCTTGCACAGATGTGCATGATATCGGGCATG : ATCTTCAACCCGAATCCTGTTTTACCACCAGTGAGTGCTCGCCCTGATCAAGTTGAGAGGGTCCTGAAAACTAGATTTCATGATGCTATGACGAAGTTGCAGCCGAATGGGAGGGAGCTCGATCTGTTGATCGTCATATTGCCCGACAATAATGGCTCCCTTTATG : GTGATCTAAAACGAATTTGTGAAACTGATCTTGGCATTGTCTCGCAATGCTGCTTGACAAAACATGTGTTTAAGATGAGCAAGCAGTATTTAGCCAATGTGTCCCTTAAGATTAATGTGAAGGTTGGAGGTAGAAACACCGTGCTTGTTGATGCGATCTCTAGGCGAATTCCCCTTGTCAGCGACCGCCCAACTATTATTTTTGGTGCAGATGTCACCCATCCCCACCCTGGGGAGGATTCTAGCCCGTCCATTGCTGCG : GTGGTTGCTTCTCAAGATTGGCCTGAGATTACCAAGTATGCTGGTCTGGTTTCTGCTCAAGCTCATAGGCAAGAGCTTATACAAGATCTGTACAAGACTTGGCAAGATCCAACTAGAGGAACTGTGACTGGTGGCATGATAAA : GGAATTGCTGATTTCCTTCCGTCGAGCGACTGGACAGAAGCCTCAGAGAATAATATTCTACCG : AGATGGAGTTAGTGAGGGACAGTTTTATCAAGTGCTTCTTTTTGAACTTGATGCAATCCGCAAG : GCTTGTGCATCTTTAGAACCCAACTATCAGCCCCCAGTTACGTTTGTGGTGGTGCAAAAGCGTCACCACACAAGGTTGTTTGCCAACAACCACCGTGATCGAAATGCTGTCGATCGGAGTGGGAACATTTTGCCTG : GTACTGTGGTTGATTCAAAGATCTGTCACCCTACTGAGTTTGATTTCTATCTCTGTAGCCATGCTGGCATACAG : GGTACTAGCCGGCCAGCACATTATCATGTCTTGTGGGACGAGAACAATTTTTCTGCTGATGGGCTGCAGTCTTTGACTAACAACCTTTGCTACAC : ATATGCTAGGTGTACTCGTTCTGTCTCCATTG : TTCCTCCAGCATATTATGCACATTTGGCAGCTTTCCGTGCTCGTTTTTACATGGAACCAGAGACATCTGACGGTGGATCTGTCACAAGCGGAGCTGCTCCGTACAGAGGTGGTGTAGGAGCTGTTGGAAGGAGCACAAGGGCGCCAGGTGTTGGTGCTGCTGTAAGGCCCCTTCCTGCTCTCAAGGAGAATGTCAAAAGGGTGATGTTCTATTGTTAGAAGTCCTCTCTAACCAGGCTATATGATATGGACATGCTGGAGTAATTTCTTTTCAAATTGTATGTGATTATCTCACCTTGATGTTTATGAAAGTTCAGTTGTCAGTTAAACAGTAGTTTATTCGCAAGTGATGTTTGTAAATTGTGGCTTGAACAATTGTTATTGAAGAGCATGGCTAGTTATTTAA : ACAGAAACAGCAAA</gDNA_template>
            <first_frame> R  R  W  D  Y  P  *  I  L  :  I  C  L  P  Q  H  S  L  S  H  C  R  S  L  N  L  *  A  S  F  *  I  G  I  S  L  L  D  H  C  L  M  L  I  G  L  R :   *  R  R  P  *  E  V  *  R  W  R  S  L  I  V  G  I  *  G  G  S  T  A  Y  L  V  *  H  L  K  Q  Q  E  S  *   : L  S  L  *  M  K  E  V  P  *  K  L  L  W  N  T  F  E  K  R  M  V  L  L  F  S  I  L  S  C  L  V  F  K  L  E  I  H  K  G  Q  I  I  C  L  W  R :   S  A  R  L  W  R  G  R  G  T  P  N  A  *  M  R  G  R  *  Q  H  F  *  K  *  P  A  S  V  L  K  R  E  R  M  I  F  F  R :   L  F  V  T  M  L  I  Q  M  T  H  M  R  G  N  L  V  L  R  L  A  R  S  L  L  K  L  R  L  A  F  C  L  H  L  G :   L  N  T  M  I  Q  V  E  K  K  T  V  Y  H  K  W  A  N  G  I  *  *  I  R :   K  W  *  M  E  E  Q  *  T  T  G  S  V  *  I  F  L  A  M  C  K  T  V  L  P  G  D  F  V  L  S  L  H  R  C  A  *  Y  R  A  * :   S  S  T  R  I  L  F  Y  H  Q  *  V  L  A  L  I  K  L  R  G  S  *  K  L  D  F  M  M  L  *  R  S  C  S  R  M  G  G  S  S  I  C  *  S  S  Y  C  P  T  I  M  A  P  F  M  :  V  I  *  N  E  F  V  K  L  I  L  A  L  S  R  N  A  A  *  Q  N  M  C  L  R  *  A  S  S  I  *  P  M  C  P  L  R  L  M  *  R  L  E  V  E  T  P  C  L  L  M  R  S  L  G  E  F  P  L  S  A  T  A  Q  L  L  F  L  V  Q  M  S  P  I  P  T  L  G  R  I  L  A  R  P  L  L  R :   W  L  L  L  K  I  G  L  R  L  P  S  M  L  V  W  F  L  L  K  L  I  G  K  S  L  Y  K  I  C  T  R  L  G  K  I  Q  L  E  E  L  *  L  V  A  *  *   : R  N  C  *  F  P  S  V  E  R  L  D  R  S  L  R  E  *  Y  S  T   : E  M  E  L  V  R  D  S  F  I  K  C  F  F  L  N  L  M  Q  S  A  R :   L  V  H  L  *  N  P  T  I  S  P  Q  L  R  L  W  W  C  K  S  V  T  T  Q  G  C  L  P  T  T  T  V  I  E  M  L  S  I  G  V  G  T  F  C  L  :  V  L  W  L  I  Q  R  S  V  T  L  L  S  L  I  S  I  S  V  A  M  L  A  Y  R :   V  L  A  G  Q  H  I  I  M  S  C  G  T  R  T  I  F  L  L  M  G  C  S  L  *  L  T  T  F  A  T   : H  M  L  G  V  L  V  L  S  P  L  :  F  L  Q  H  I  M  H  I  W  Q  L  S  V  L  V  F  T  W  N  Q  R  H  L  T  V  D  L  S  Q  A  E  L  L  R  T  E  V  V  *  E  L  L  E  G  A  Q  G  R  Q  V  L  V  L  L  *  G  P  F  L  L  S  R  R  M  S  K  G  *  C  S  I  V  R  S  P  L  *  P  G  Y  M  I  W  T  C  W  S  N  F  F  S  N  C  M  *  L  S  H  L  D  V  Y  E  S  S  V  V  S  *  T  V  V  Y  S  Q  V  M  F  V  N  C  G  L  N  N  C  Y  *  R  A  W  L  V  I  *  :  T  E  T  A   </first_frame>
            <second_frame>  A  D  G  I  I  P  E  Y  * :   Y  V  F  H  S  I  H  *  A  T  A  G  H  *  I  C  E  P  A  S  E  S  G  Y  L  F  *  T  I  V  *  C  *  S  G  *   : D  K  E  G  P  E  R  C  K  G  G  G  H  S  S  W  E  Y  E  E  E  V  P  H  I  W  F  D  I  S  S  N  K  R  V  D  :  F  P  C  R  *  K  R  Y  H  E  S  C  C  G  I  L  S  R  N  V  W  F  C  Y  S  A  Y  S  V  A  L  S  S  S  W  K  Y  T  K  A  K  L  F  A  Y  G   : G  L  Q  D  C  G  G  A  E  V  L  Q  T  L  E  *  E  A  D  N  S  T  S  E  S  D  L  P  A  S  S  R  E  R  E  *  Y  S  S   : D  C  S  S  Q  C  L  F  R  *  P  I  C  E  G  I  W  Y  *  D  *  R  E  A  C  S  S  *  G  S  H  F  A  C  T  L   : A  *  I  P  *  Y  R  S  R  K  R  L  S  T  T  S  G  P  M  E  Y  D  E  *   : E  N  G  K  W  R  N  S  E  Q  L  D  L  Y  K  F  F  S  Q  C  A  R  Q  C  C  P  G  I  L  F  *  A  C  T  D  V  H  D  I  G  H   : D  L  Q  P  E  S  C  F  T  T  S  E  C  S  P  *  S  S  *  E  G  P  E  N  *  I  S  *  C  Y  D  E  V  A  A  E  W  E  G  A  R  S  V  D  R  H  I  A  R  Q  *  W  L  P  L  W :   *  S  K  T  N  L  *  N  *  S  W  H  C  L  A  M  L  L  D  K  T  C  V  *  D  E  Q  A  V  F  S  Q  C  V  P  *  D  *  C  E  G  W  R  *  K  H  R  A  C  *  C  D  L  *  A  N  S  P  C  Q  R  P  P  N  Y  Y  F  W  C  R  C  H  P  S  P  P  W  G  G  F  *  P  V  H  C  C   : G  G  C  F  S  R  L  A  *  D  Y  Q  V  C  W  S  G  F  C  S  S  S  *  A  R  A  Y  T  R  S  V  Q  D  L  A  R  S  N  *  R  N  C  D  W  W  H  D  K  :  G  I  A  D  F  L  P  S  S  D  W  T  E  A  S  E  N  N  I  L  P  :  R  W  S  *  *  G  T  V  L  S  S  A  S  F  *  T  *  C  N  P  Q   : G  L  C  I  F  R  T  Q  L  S  A  P  S  Y  V  C  G  G  A  K  A  S  P  H  K  V  V  C  Q  Q  P  P  *  S  K  C  C  R  S  E  W  E  H  F  A  W :   Y  C  G  *  F  K  D  L  S  P  Y  *  V  *  F  L  S  L  *  P  C  W  H  T   : G  Y  *  P  A  S  T  L  S  C  L  V  G  R  E  Q  F  F  C  *  W  A  A  V  F  D  *  Q  P  L  L  H  :  I  C  *  V  Y  S  F  C  L  H  C :   S  S  S  I  L  C  T  F  G  S  F  P  C  S  F  L  H  G  T  R  D  I  *  R  W  I  C  H  K  R  S  C  S  V  Q  R  W  C  R  S  C  W  K  E  H  K  G  A  R  C  W  C  C  C  K  A  P  S  C  S  Q  G  E  C  Q  K  G  D  V  L  L  L  E  V  L  S  N  Q  A  I  *  Y  G  H  A  G  V  I  S  F  Q  I  V  C  D  Y  L  T  L  M  F  M  K  V  Q  L  S  V  K  Q  *  F  I  R  K  *  C  L  *  I  V  A  *  T  I  V  I  E  E  H  G  *  L  F  K :   Q  K  Q  Q  </second_frame>
            <third_frame>   Q  M  G  L  S  L  N  I   : D  M  S  S  T  A  F  I  E  P  L  P  V  I  E  F  V  S  Q  L  L  N  R  D  I  S  S  R  P  L  S  D  A  D  R  V  K  :  I  K  K  A  L  R  G  V  K  V  E  V  T  H  R  G  N  M  R  R  K  Y  R  I  S  G  L  T  S  Q  A  T  R  E  L  T :   F  P  V  D  E  R  G  T  M  K  A  V  V  E  Y  F  R  E  T  Y  G  F  V  I  Q  H  T  Q  L  P  C  L  Q  V  G  N  T  Q  R  P  N  Y  L  P  M  E  :  V  C  K  I  V  E  G  Q  R  Y  S  K  R  L  N  E  R  Q  I  T  A  L  L  K  V  T  C  Q  R  P  Q  E  R  E  N  D  I  L  Q  :  T  V  R  H  N  A  Y  S  D  D  P  Y  A  R  E  F  G  I  K  I  S  E  K  L  A  Q  V  E  A  R  I  L  P  A  P  W  :  L  K  Y  H  D  T  G  R  E  K  D  C  L  P  Q  V  G  Q  W  N  M  M  N  K  :  K  M  V  N  G  G  T  V  N  N  W  I  C  I  N  F  S  R  N  V  Q  D  S  V  A  R  G  F  C  S  E  L  A  Q  M  C  M  I  S  G  M  :  I  F  N  P  N  P  V  L  P  P  V  S  A  R  P  D  Q  V  E  R  V  L  K  T  R  F  H  D  A  M  T  K  L  Q  P  N  G  R  E  L  D  L  L  I  V  I  L  P  D  N  N  G  S  L  Y   : G  D  L  K  R  I  C  E  T  D  L  G  I  V  S  Q  C  C  L  T  K  H  V  F  K  M  S  K  Q  Y  L  A  N  V  S  L  K  I  N  V  K  V  G  G  R  N  T  V  L  V  D  A  I  S  R  R  I  P  L  V  S  D  R  P  T  I  I  F  G  A  D  V  T  H  P  H  P  G  E  D  S  S  P  S  I  A  A  :  V  V  A  S  Q  D  W  P  E  I  T  K  Y  A  G  L  V  S  A  Q  A  H  R  Q  E  L  I  Q  D  L  Y  K  T  W  Q  D  P  T  R  G  T  V  T  G  G  M  I  K :   E  L  L  I  S  F  R  R  A  T  G  Q  K  P  Q  R  I  I  F  Y  R :   D  G  V  S  E  G  Q  F  Y  Q  V  L  L  F  E  L  D  A  I  R  K  :  A  C  A  S  L  E  P  N  Y  Q  P  P  V  T  F  V  V  V  Q  K  R  H  H  T  R  L  F  A  N  N  H  R  D  R  N  A  V  D  R  S  G  N  I  L  P   : G  T  V  V  D  S  K  I  C  H  P  T  E  F  D  F  Y  L  C  S  H  A  G  I  Q  :  G  T  S  R  P  A  H  Y  H  V  L  W  D  E  N  N  F  S  A  D  G  L  Q  S  L  T  N  N  L  C  Y  T :   Y  A  R  C  T  R  S  V  S  I   : V  P  P  A  Y  Y  A  H  L  A  A  F  R  A  R  F  Y  M  E  P  E  T  S  D  G  G  S  V  T  S  G  A  A  P  Y  R  G  G  V  G  A  V  G  R  S  T  R  A  P  G  V  G  A  A  V  R  P  L  P  A  L  K  E  N  V  K  R  V  M  F  Y  C  *  K  S  S  L  T  R  L  Y  D  M  D  M  L  E  *  F  L  F  K  L  Y  V  I  I  S  P  *  C  L  *  K  F  S  C  Q  L  N  S  S  L  F  A  S  D  V  C  K  L  W  L  E  Q  L  L  L  K  S  M  A  S  Y  L   : N  R  N  S  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="116617" stop="116641"/>
                    <exon start="116788" stop="116897"/>
                    <exon start="117172" stop="117278"/>
                    <exon start="117508" stop="117646"/>
                    <exon start="117729" stop="117845"/>
                    <exon start="118570" stop="118677"/>
                    <exon start="118835" stop="118906"/>
                    <exon start="119665" stop="119787"/>
                    <exon start="119883" stop="120048"/>
                    <exon start="120139" stop="120398"/>
                    <exon start="120496" stop="120638"/>
                    <exon start="120750" stop="120812"/>
                    <exon start="120899" stop="120962"/>
                    <exon start="121107" stop="121242"/>
                    <exon start="121325" stop="121398"/>
                    <exon start="121481" stop="121575"/>
                    <exon start="121646" stop="121677"/>
                    <exon start="121834" stop="122051"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2049</number_coding_nucleotides>
                  <number_encoded_amino_acids>683</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMGLSLNIDMSSTAFIEPLPVIEFVSQLLNRDISSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKAVVEYFRETYGFVIQHTQLPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPQERENDILQTVRHNAYSDDPYAREFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCSELAQMCMISGMIFNPNPVLPPVSARPDQVERVLKTRFHDAMTKLQPNGRELDLLIVILPDNNGSLYGDLKRICETDLGIVSQCCLTKHVFKMSKQYLANVSLKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVSAQAHRQELIQDLYKTWQDPTRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHRDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDGGSVTSGAAPYRGGVGAVGRSTRAPGVGAAVRPLPALKENVKRVMFYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="129125" PGL_stop="126723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129125" e_stop="128897"/>
            <exon e_start="128798" e_stop="128772"/>
            <exon e_start="128649" e_stop="128587"/>
            <exon e_start="127395" e_stop="127317"/>
            <exon e_start="127201" e_stop="127156"/>
            <exon e_start="127001" e_stop="126723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.938" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="129125" e_stop="128897" e_length="229"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="128896" i_stop="128799" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="128798" e_stop="128772" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128771" i_stop="128650" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="128649" e_stop="128587" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="1.000">
            <gDNA_intron_boundary i_start="128586" i_stop="127396" i_length="1191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="127395" e_stop="127317" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="127316" i_stop="127202" i_length="115"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="127201" e_stop="127156" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.993">
            <gDNA_intron_boundary i_start="127155" i_stop="127002" i_length="154"/>
          </intron>
          <exon e_serial="6" e_score="0.982">
            <gDNA_exon_boundary e_start="127001" e_stop="126723" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129125" stop="128897"/>
              <exon start="128798" stop="128772"/>
              <exon start="128649" stop="128587"/>
              <exon start="127395" stop="127317"/>
              <exon start="127201" stop="127156"/>
              <exon start="127001" stop="126723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327423" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGTTCTACTTACGCAAATAGTCTCAAAATTTAAACTTAACGACAACACGAGCCCAAACCCGAATTCATCTCCGGGTAATGTAATGCGACATTTCGATTCTCAAATAGCAAGGCTTGAGACTTTTGAGTCAAACTAGGGTTTTGCTTGCAGAAGAGTAACTCGTCGGAGAAACAGCATCAGCAGCCATGGCTAGCACCAAAGTACAGAGGATTATGACCCAGCCCATT : AATCTGATCTTCAGATTTCTTCAGAGT : AAAGCTCGCATTCAGATATGGCTATTTGAGCAGAAGGATCAGAGGATTGAAGGACGTATTATT : GGTTTTGATGAGTACATGAATTTGGTTCTAGATGATGCCGAGGAAGTCAATGTGAAGAAGAATAGCAGAAAGCAGTTAG : GGCGGATTCTTCTGAAAGGAGATAATATCACATTGATGATGAACAC : GGGGAAATGATTTCCTGTTAGCTGGATCTTGAGAAGAAGTTCAATTTTCTGGCAAAAATCAACTATTGGAATGTCGTCTTTGTGGACAAGAAGCTGGATGTTAGATGCACATGATTGAGTTTGAACTTCCATTTATGTTTTGATATATGTATATTCAGCATGGTATGCTCAGATCTCTTTATACAGTGAAGAAGAGTAGCCTTATGACCATTTCTCTCTATGTTGGTAGTAACAATTATATCGCAGGTAAAGAATTGTGTTAACTCGAGAAATCAAGTG</gDNA_template>
            <first_frame> K  V  L  L  T  Q  I  V  S  K  F  K  L  N  D  N  T  S  P  N  P  N  S  S  P  G  N  V  M  R  H  F  D  S  Q  I  A  R  L  E  T  F  E  S  N  *  G  F  A  C  R  R  V  T  R  R  R  N  S  I  S  S  H  G  *  H  Q  S  T  E  D  Y  D  P  A  H   : *  S  D  L  Q  I  S  S  E   : *  S  S  H  S  D  M  A  I  *  A  E  G  S  E  D  *  R  T  Y  Y   : W  F  *  *  V  H  E  F  G  S  R  *  C  R  G  S  Q  C  E  E  E  *  Q  K  A  V  R :   A  D  S  S  E  R  R  *  Y  H  I  D  D  E  H  :  G  E  M  I  S  C  *  L  D  L  E  K  K  F  N  F  L  A  K  I  N  Y  W  N  V  V  F  V  D  K  K  L  D  V  R  C  T  *  L  S  L  N  F  H  L  C  F  D  I  C  I  F  S  M  V  C  S  D  L  F  I  Q  *  R  R  V  A  L  *  P  F  L  S  M  L  V  V  T  I  I  S  Q  V  K  N  C  V  N  S  R  N  Q  V </first_frame>
            <second_frame>  R  F  Y  L  R  K  *  S  Q  N  L  N  L  T  T  T  R  A  Q  T  R  I  H  L  R  V  M  *  C  D  I  S  I  L  K  *  Q  G  L  R  L  L  S  Q  T  R  V  L  L  A  E  E  *  L  V  G  E  T  A  S  A  A  M  A  S  T  K  V  Q  R  I  M  T  Q  P  I  :  N  L  I  F  R  F  L  Q  S  :  K  A  R  I  Q  I  W  L  F  E  Q  K  D  Q  R  I  E  G  R  I  I  :  G  F  D  E  Y  M  N  L  V  L  D  D  A  E  E  V  N  V  K  K  N  S  R  K  Q  L   : G  R  I  L  L  K  G  D  N  I  T  L  M  M  N  T :   G  K  *  F  P  V  S  W  I  L  R  R  S  S  I  F  W  Q  K  S  T  I  G  M  S  S  L  W  T  R  S  W  M  L  D  A  H  D  *  V  *  T  S  I  Y  V  L  I  Y  V  Y  S  A  W  Y  A  Q  I  S  L  Y  S  E  E  E  *  P  Y  D  H  F  S  L  C  W  *  *  Q  L  Y  R  R  *  R  I  V  L  T  R  E  I  K   </second_frame>
            <third_frame>   G  S  T  Y  A  N  S  L  K  I  *  T  *  R  Q  H  E  P  K  P  E  F  I  S  G  *  C  N  A  T  F  R  F  S  N  S  K  A  *  D  F  *  V  K  L  G  F  C  L  Q  K  S  N  S  S  E  K  Q  H  Q  Q  P  W  L  A  P  K  Y  R  G  L  *  P  S  P  L :   I  *  S  S  D  F  F  R  V :   K  L  A  F  R  Y  G  Y  L  S  R  R  I  R  G  L  K  D  V  L  L :   V  L  M  S  T  *  I  W  F  *  M  M  P  R  K  S  M  *  R  R  I  A  E  S  S  *  :  G  G  F  F  *  K  E  I  I  S  H  *  *  *  T   : R  G  N  D  F  L  L  A  G  S  *  E  E  V  Q  F  S  G  K  N  Q  L  L  E  C  R  L  C  G  Q  E  A  G  C  *  M  H  M  I  E  F  E  L  P  F  M  F  *  Y  M  Y  I  Q  H  G  M  L  R  S  L  Y  T  V  K  K  S  S  L  M  T  I  S  L  Y  V  G  S  N  N  Y  I  A  G  K  E  L  C  *  L  E  K  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="128965" stop="128897"/>
                    <exon start="128798" stop="128772"/>
                    <exon start="128649" stop="128587"/>
                    <exon start="127395" stop="127317"/>
                    <exon start="127201" stop="127156"/>
                    <exon start="127001" stop="126992"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVGETASAAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDQRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKQLGRILLKGDNITLMMNTGK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="132376" PGL_stop="133142"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132376" e_stop="133142"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="132376" e_stop="133142" e_length="767"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132376" stop="133142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAAATAGAGCTTCTTCTGCGGCTTGTCCAGAAGACTTGAGGAAAATTTCGCCTTCTGAACCTAAGGAGAGAGATTCCACTCTAGATACCGAACCTGAAAGTGGAATTTCAAATAGCAAGAAGACTGTGTTGAATGGAGGGGGTGATCACTTTGAGGATCTTTCAGTTGGAGGGTGTAATAATATAGCAAATTCAGGTAGATCCATCATAGATATGGATAATGAGGATGCTATATGTAAGCGTACTAGAGCACGCTACTCACTTGCTAGCTTTACACTTGATGAACTTGAGACATTTCTTCAGGAGACTGATGACGAGGATGATCTTCAGAATGTCAACGATGAAGAAGAGTACAGGAAGTTTCTTGCAGCTGTTTTACATGGTGGAGATGGAAATTCTGGAAATATACAAGATAATGAAAATGTTGATGATGAAGATGAAGACAATGATGCAGATTTTGAGCTTGAAATTGAGGAGGCATTGGAGAGTGACCTTGATGAACATCTGAAGGATGATATTGAAGAGTACGAGGCTGTTGGTCGAAGACCTAAGACTAGGCAAACCAGGCGCCAAAGATCTTCTCTTGAGAACAAGAATAAGATTTTAGGATTGTCAGATAGGCCACTACGCCCTTTGTTACCATATCTTCCCAGTTCTCCTTATTCCGTACATGGTGCAAAAGGCATGATGCCTCCATCCAGTCTGCTGCCTGCAAATGATGGCTTTGTGAATGGATTTACACCCCATCAGATAGGACAATTACATT</gDNA_template>
            <first_frame> A  K  *  S  F  F  C  G  L  S  R  R  L  E  E  N  F  A  F  *  T  *  G  E  R  F  H  S  R  Y  R  T  *  K  W  N  F  K  *  Q  E  D  C  V  E  W  R  G  *  S  L  *  G  S  F  S  W  R  V  *  *  Y  S  K  F  R  *  I  H  H  R  Y  G  *  *  G  C  Y  M  *  A  Y  *  S  T  L  L  T  C  *  L  Y  T  *  *  T  *  D  I  S  S  G  D  *  *  R  G  *  S  S  E  C  Q  R  *  R  R  V  Q  E  V  S  C  S  C  F  T  W  W  R  W  K  F  W  K  Y  T  R  *  *  K  C  *  *  *  R  *  R  Q  *  C  R  F  *  A  *  N  *  G  G  I  G  E  *  P  *  *  T  S  E  G  *  Y  *  R  V  R  G  C  W  S  K  T  *  D  *  A  N  Q  A  P  K  I  F  S  *  E  Q  E  *  D  F  R  I  V  R  *  A  T  T  P  F  V  T  I  S  S  Q  F  S  L  F  R  T  W  C  K  R  H  D  A  S  I  Q  S  A  A  C  K  *  W  L  C  E  W  I  Y  T  P  S  D  R  T  I  T   </first_frame>
            <second_frame>  R  N  R  A  S  S  A  A  C  P  E  D  L  R  K  I  S  P  S  E  P  K  E  R  D  S  T  L  D  T  E  P  E  S  G  I  S  N  S  K  K  T  V  L  N  G  G  G  D  H  F  E  D  L  S  V  G  G  C  N  N  I  A  N  S  G  R  S  I  I  D  M  D  N  E  D  A  I  C  K  R  T  R  A  R  Y  S  L  A  S  F  T  L  D  E  L  E  T  F  L  Q  E  T  D  D  E  D  D  L  Q  N  V  N  D  E  E  E  Y  R  K  F  L  A  A  V  L  H  G  G  D  G  N  S  G  N  I  Q  D  N  E  N  V  D  D  E  D  E  D  N  D  A  D  F  E  L  E  I  E  E  A  L  E  S  D  L  D  E  H  L  K  D  D  I  E  E  Y  E  A  V  G  R  R  P  K  T  R  Q  T  R  R  Q  R  S  S  L  E  N  K  N  K  I  L  G  L  S  D  R  P  L  R  P  L  L  P  Y  L  P  S  S  P  Y  S  V  H  G  A  K  G  M  M  P  P  S  S  L  L  P  A  N  D  G  F  V  N  G  F  T  P  H  Q  I  G  Q  L  H  </second_frame>
            <third_frame>   E  I  E  L  L  L  R  L  V  Q  K  T  *  G  K  F  R  L  L  N  L  R  R  E  I  P  L  *  I  P  N  L  K  V  E  F  Q  I  A  R  R  L  C  *  M  E  G  V  I  T  L  R  I  F  Q  L  E  G  V  I  I  *  Q  I  Q  V  D  P  S  *  I  W  I  M  R  M  L  Y  V  S  V  L  E  H  A  T  H  L  L  A  L  H  L  M  N  L  R  H  F  F  R  R  L  M  T  R  M  I  F  R  M  S  T  M  K  K  S  T  G  S  F  L  Q  L  F  Y  M  V  E  M  E  I  L  E  I  Y  K  I  M  K  M  L  M  M  K  M  K  T  M  M  Q  I  L  S  L  K  L  R  R  H  W  R  V  T  L  M  N  I  *  R  M  I  L  K  S  T  R  L  L  V  E  D  L  R  L  G  K  P  G  A  K  D  L  L  L  R  T  R  I  R  F  *  D  C  Q  I  G  H  Y  A  L  C  Y  H  I  F  P  V  L  L  I  P  Y  M  V  Q  K  A  *  C  L  H  P  V  C  C  L  Q  M  M  A  L  *  M  D  L  H  P  I  R  *  D  N  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0074O13.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132377" stop="133141"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNRASSAACPEDLRKISPSEPKERDSTLDTEPESGISNSKKTVLNGGGDHFEDLSVGGCNNIANSGRSIIDMDNEDAICKRTRARYSLASFTLDELETFLQETDDEDDLQNVNDEEEYRKFLAAVLHGGDGNSGNIQDNENVDDEDEDNDADFELEIEEALESDLDEHLKDDIEEYEAVGRRPKTRQTRRQRSSLENKNKILGLSDRPLRPLLPYLPSSPYSVHGAKGMMPPSSLLPANDGFVNGFTPHQIGQLH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 48 chains have been computed
$ 
$ memory statistics:
$ 537704 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 18541 bytes was the average size of a spliced alignment
$ 27432 bytes predicted gene locations in total
$ 17 predicted gene locations have been stored
$ 1613 bytes was the average size of a predicted gene location
$ 4 megabytes was the average size of the backtrace matrix
$ 54 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 23:34:28
-->
