<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-07-28 10:19:27"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392291" ref_strand="+" ref_description="SGN-E392291 [TUS-35-E18]">
      <seq>attacaccagtatactgtatagtttttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4534" stop="5777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4834" g_stop="5477" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E392291" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4834" e_stop="5477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGAC</genome_strand>
        <mrna_strand>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396118" ref_strand="+" ref_description="SGN-E396118 [TUS-19-M1]">
      <seq>attactccactatactgtatagtttttctctctctttaatttttctgaattcatcacaaataaaaattattctcatcatcacagcattcggtgtatccttaagtcgcatcagcatctatcaaacttggaaaatattcaaagtaatccattatttcacggtatcgttttctcaaagagttgcttcaaattgtagaaataaaaaaggtaaattggaatcaattttcgccttgttgtgtaaggctttcttttcgatttgatttgattagattttgaatttgaatgtgttcgacttcctcgtatataacaatttatgagtgatggtgactacctgggtttgagttatacaagcaaaaagaaaccggtctgtctatgtagtattcaggactagtaaaatagatgcaatattattgcgaggagatcgagttttttctcttagctaactgtcggagaacgatgtaatagctccgttttggggtgttagaagacactaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4534" stop="5623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4834" g_stop="5323" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E396118" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4834" e_stop="5323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACA-CATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTT-TGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAAT</genome_strand>
        <mrna_strand>ATTACTCCACTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCACAAATAAAAATTATTCTCATCATCACAGCATTCGGTGTATCCTTAAGTCGCATCAGCATCTATCAAACTTGGAAAATATTCAAAGTAATCCATTATTTCACGGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAATAAAAAAGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGCTTTCTTTTCGATTTGATTTGATTAGATTTTGAATTTGAATGTGTTCGACTTCCTCGTATATAACAATTTATGAGTGATGGTGACTACCTGGGTTTGAGTTATACAAGCAAAAAGAAACCGGTCTGTCTATGTAGTATTCAGGACTAGTAAAATAGATGCAATATTATTGCGAGGAGATCGAGTTTTTTCTCTTAGCTAACTGTCGGAGAACGATGTAATAGCTCCGTTTTGGGGTGTTAGAAGACACTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398563" ref_strand="+" ref_description="SGN-E398563 [TUS-19-O1]">
      <seq>acttttccagtatactgtatagtttttctctctctttaatttttctgaattcatcaaaaataaaaaagattctcatcatcacacattcggtgtatccttaagtcgcatcaggatacgatcaaaatttgaaaaaattcaaagtaatccattatttcagtgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagaggggaaattggaatcaattttcgccttgttgtgtaaggttgtcttttcgatttgatttgattagactttgaatttgaatgtgttcgacttcctcgtatataataattttgagtgatggtgactacctgggtttgagagtagacaagcaaaaaaaaaccggtctgtctatcgagtattcagtactagtaaaatagaagcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4540" stop="5586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4834" g_stop="5286" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E398563" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4834" e_stop="5286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCAT-CTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAG-TTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGAT</genome_strand>
        <mrna_strand>ACTTTTCCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAGATTCTCATCATCACACATTCGGTGTATCCTTAAGTCGCATCAGGATACGATCAAAATTTGAAAAAATTCAAAGTAATCCATTATTTCAGTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGGAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTGTCTTTTCGATTTGATTTGATTAGACTTTGAATTTGAATGTGTTCGACTTCCTCGTATATAATAATTTTGAGTGATGGTGACTACCTGGGTTTGAGAGTAGACAAGCAAAAAAAAACCGGTCTGTCTATCGAGTATTCAGTACTAGTAAAATAGAAGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398558" ref_strand="+" ref_description="SGN-E398558 [TUS-19-G1]">
      <seq>attattccagtatactgtatagtttttctctctctttaatttttctgaattcatcaaaaatagaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4534" stop="5362"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4834" g_stop="5062" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E398558" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>229</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4834" e_stop="5062"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTG</genome_strand>
        <mrna_strand>ATTATTCCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAGAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375721" ref_strand="+" ref_description="SGN-E375721 [TUS-35-G21]">
      <seq>ttacaccagtatactgtatagtttttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaagaggtacaggtacatcatcagcaagcgctgtgacggaggggggacagtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4535" stop="5795"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4835" g_stop="5495" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E375721" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4835" e_stop="5495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAAC</genome_strand>
        <mrna_strand>TTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAAGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268295" ref_strand="+" ref_description="SGN-E268295 [cLEM-3-I12]">
      <seq>ttacaccagtatactgtatagtttttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4535" stop="5702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4835" g_stop="5402" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="568" r_length="568" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E268295" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4835" e_stop="5402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAG</genome_strand>
        <mrna_strand>TTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260283" ref_strand="+" ref_description="SGN-E260283 [cLEG-53-N24]">
      <seq>tttttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttaattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4556" stop="5776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4856" g_stop="5476" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E260283" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4856" e_stop="5476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGA</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTAATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256900" ref_strand="+" ref_description="SGN-E256900 [cLEG-44-A21]">
      <seq>tttttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttaattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4556" stop="5563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4856" g_stop="5263" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E256900" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4856" e_stop="5263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTC</genome_strand>
        <mrna_strand>TTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTAATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263843" ref_strand="+" ref_description="SGN-E263843 [cLEG-73-E18]">
      <seq>ttttctctctctttaatttttcttaattcatcaaaaataaaaaaaaatctcatcttcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagaagcttcaaattgtagaaacaaacagggtgaattggaatcaattttcgccttgttgtgtaaggaaaacatttccatttgattcgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4557" stop="5372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4857" g_stop="5096" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E263843" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4857" e_stop="5096"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATT</genome_strand>
        <mrna_strand>TTTTCTCTCTCTTTAATTTTTCTTAATTCATCAAAAATAAAAAAAAATCTCATCTTCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGAAGCTTCAAATTGTAGAAACAAACAGGGTGAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGAAAACATTTCCATTTGATTCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260280" ref_strand="+" ref_description="SGN-E260280 [cLEG-53-J24]">
      <seq>ttctctctctttaatttttctgaattcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttaattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggactgtctatctagtattcaggactaataaaatagatgcgatataattgagaggcgatcgagttttttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4559" stop="5563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4859" g_stop="5263" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="405" r_length="405" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E260280" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4859" e_stop="5263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTC</genome_strand>
        <mrna_strand>TTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTAATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGACTGTCTATCTAGTATTCAGGACTAATAAAATAGATGCGATATAATTGAGAGGCGATCGAGTTTTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262887" ref_strand="+" ref_description="SGN-E262887 [cLEG-59-B19]">
      <seq>tcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtgacggaggggggacagtcaacaacggtgtctgcagcaccgccaagtcgatacgagtcacagaaacgtcgagattggaatacttttttacagtacttaaggaaccacaaaccgccattaaccctagcccgctgcagcggagctcacgtgatcgagttccttaagtaccttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4584" stop="5947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4884" g_stop="5647" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="764" r_length="764" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E262887" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4884" e_stop="5647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCGAGATTGGAATACTTTTTTACAGTACTTAAGGAACCACAAACCGCCATTAACCCTAGCCCGCTGCAGCGGAGCTCACGTGATCGAGTTCCTTAAGTACCTTGATC</genome_strand>
        <mrna_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCGAGATTGGAATACTTTTTTACAGTACTTAAGGAACCACAAACCGCCATTAACCCTAGCCCGCTGCAGCGGAGCTCACGTGATCGAGTTCCTTAAGTACCTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262537" ref_strand="+" ref_description="SGN-E262537 [cLEG-63-M13]">
      <seq>tcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtgacggaggggggacagtcaacaacggtgtctgcagcaccgccaagtcgatacgagtcacagaaacgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4584" stop="5843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4884" g_stop="5543" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="660" r_length="660" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E262537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4884" e_stop="5543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCG</genome_strand>
        <mrna_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256114" ref_strand="+" ref_description="SGN-E256114 [cLEG-37-J11]">
      <seq>tcatcaaaaataaaaaaaattctcatcatcacacattcagtgtatccttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtgacggaagggggacagtcaacaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4584" stop="5799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4884" g_stop="5499" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E256114" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4884" e_stop="5499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACG</genome_strand>
        <mrna_strand>TCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAAGGGGGACAGTCAACAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394974" ref_strand="+" ref_description="SGN-E394974 [TUS-34-I8]">
      <seq>cttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaagaggtacaggtacatcatcagcaagcgctgtgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4630" stop="5777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4930" g_stop="5477" g_length="548"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E394974" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4930" e_stop="5477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGAC</genome_strand>
        <mrna_strand>CTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAAGAGGTACAGGTACATCATCAGCAAGCGCTGTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249903" ref_strand="+" ref_description="SGN-E249903 [cLEF-57-H4]">
      <seq>ttaagtcgcatcatcatctatcaaactttgaaaaaattcaaagtaatccattatttcactgtatcgttttctcaaagagttgcttcaaattgtagaaacaaagagggtaaattggaatcaattttcgccttgttgtgtaaggttttcttttcgatttgatttgatttgattttgaatttgaatgtgttccacttcctcgtatataacaattttgagtgatggtgactacctgggtttgagttagacaagcaaaaagaaaccggtctgtctatctagtattcagtactagtaaaatagatgcaatataattgcgaggcgatcgagttttttctcttagctaactgtcagacaacgatgtaaaagctccattttggggttttagaagacactaatcatcagtggagttagtaattggaattatcaatatattttattctcataaattctagcattttatggattcaacatctagagttgaacaacccgacccaaacattgtcggtagcagcgaaggaggtacaggtacatcatcagcaagcgctgtgacggaggggggacagtcaacaacggtgtctgcagcaccgccaagtcgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="4631" stop="5825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4931" g_stop="5525" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E249903" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4931" e_stop="5525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATA</genome_strand>
        <mrna_strand>TTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711579" ref_strand="+" ref_description="SGN-E711579 [FB02BE10]">
      <seq>caattaagggtgtctgcagcaccgccaagtcgatacgagtcccataaacgtcgagattggaatacttttttacagtacttaaggaaccacaaaccgccattaaccctagcccgctgccgcggagctcacgtgatcgagttccttaagtaccttgatcaatttgggaaaacaaaagtgcacgtgaccgggtgcccgtatttcgggcacccaaatccacccgcaccttgtgcgtgtccgttaaaacaggcttggggtagccttgatgcactaattggaaggctaagagctgcttatgaagaaaatgggggaaaacctgaatcaaatccatttggtgccaaagctgttagaatttatttaagggaagttagagaaagtcaagcaaaagctagaggaattccttatgaaaagaagaaacgtaaacggcccagtacatccagttcggtcgcgacagctggaagtgctgtcgcggcagaaggaggaagtagtagtggtggtggtgatggcagtggcggagacggtgttattggtcaacaaccacctactgatcctaatacaacagtatagtataatactattcattttcaattttaagtttagttagtaattgtgaattacttgaatcttatatgacgcgaattcaaatttagttctgatcacatttgttttactaaaatatatatagtaacaattgaattatcattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5190" stop="6493"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5492" g_stop="6197" g_length="706"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E711579" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>706</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5492" e_stop="6197"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAA-CAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCGAGATTGGAATACTTTTTTACAGTACTTAAGGAACCACAAACCGCCATTAACCCTAGCCCGCTGCAGCGGAGCTCACGTGATCGAGTTCCTTAAGTACCTTGATCAATTTGGGAAAACAAAAGTGCACGTGACCGGGTGCCCGTATTTCGGGCACCCAAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTAGTTCTGATCACATTTGTTTTACTAAAATATATATAGTAACAATTGAATTATCATTCATCTG</genome_strand>
        <mrna_strand>CAATTAAGGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCCCATAAACGTCGAGATTGGAATACTTTTTTACAGTACTTAAGGAACCACAAACCGCCATTAACCCTAGCCCGCTGCCGCGGAGCTCACGTGATCGAGTTCCTTAAGTACCTTGATCAATTTGGGAAAACAAAAGTGCACGTGACCGGGTGCCCGTATTTCGGGCACCCAAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTAGTTCTGATCACATTTGTTTTACTAAAATATATATAGTAACAATTGAATTATCATTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375720" ref_strand="+" ref_description="SGN-E375720 [TUS-35-G21](-)">
      <seq>cccaaatccacccgcaccttgtgcgtgtccgttaaaacaggcttggggtagccttgatgcactaattggaaggctaagagctgcttatgaagaaaatgggggaaaacctgaatcaaatccatttggtgccaaagctgttagaatttatttaagggaagttagagaaagtcaagcaaaagctagaggaattccttatgaaaagaagaaacgtaaacggcccagtacatccagttcggtcgcgacagctggaagtgctgtcgcggcagaaggaggaagtagtagtggtggtggtgatggcagtggcggagacggtgttattggtcaacaaccacctactgatcctaatacaacagtatagtataatactattcattttcaattttaagtttagttagtaattgtgaattacttgaatcttatatgacgcgaattcaaatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5397" stop="6436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5697" g_stop="6136" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="440" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="450"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E375720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5697" e_stop="6136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTA</genome_strand>
        <mrna_strand>CCCAAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392537" ref_strand="+" ref_description="SGN-E392537 [TUS-35-E18](-)">
      <seq>aaatccacccgcaccttgtgcgtgtccgttaaaacaggcttggggtagccttgatgcactaattggaaggctaagagctgcttatgaagaaaatgggggaaaacctgaatcaaatccatttggtgccaaagctgttagaatttatttaagggaagttagagaaagtcaagcaaaagctagaggaattccttatgaaaagaagaaacgtaaacggcccagtacatccagttcggtcgcgacagctggaagtgctgtcgcggcagaaggaggaagtagtagtggtggtggtgatggcagtggcggagacggtgttattggtcaacaaccacctactgatcctaatacaacagtatagtataatactattcattttcaattttaagtttagttagtaattgtgaattacttgaatcttatatgacgcgaattcaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5400" stop="6436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5700" g_stop="6136" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="437" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="438" polyA_stop="447"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E392537" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>437</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5700" e_stop="6136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTA</genome_strand>
        <mrna_strand>AAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E428539" ref_strand="+" ref_description="SGN-E428539 [STM-50-D7]">
      <seq>taaaaaaacaaatgtgatcagaattaaatttgaattcgcgtcacattagattcaggtaattcacaattactgactacacttaaaattgaaaatgaatagtattgtactatactgttgtattaggagcagtaggtggttgctgaccaataacaccgtctccgccactgccatcaccaccaccaccactacctcctccttctgccgtgatagcactgccagctgtcgcgaccgaactcgatgtactcggccgtttacgtttcttcttttcataaggaattcctctagcttttgcttgactttctctaacttcccttaaataaattctaacagctttagcaccaaatggatttgattcaggttttcccccattttcttcataagcagctcttagccttccaattagtgcatcaaggctaccccaagcctgtttcaacggacacgcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="6460" stop="5416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6160" g_stop="5716" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E428539" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E428539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6160" e_stop="5716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAAAACAAATGTGATCAGAACTAAATTTGAATTCGCGTCATATAAGATTCAAGTAATTCACAATTACTAACTAAACTTAAAATTGAAAATGAATAGTATTATACTATACTGTTGTATTAGGATCAGTAGGTGGTTGTTGACCAATAACACCGTCTCCGCCACTGCCATCACCACCACCACTACTACTTCCTCCTTCTGCCGCGACAGCACTTCCAGCTGTCGCGACCGAACTGGATGTACTGGGCCGTTTACGTTTCTTCTTTTCATAAGGAATTCCTCTAGCTTTTGCTTGACTTTCTCTAACTTCCCTTAAATAAATTCTAACAGCTTTGGCACCAAATGGATTTGATTCAGGTTTTCCCCCATTTTCTTCATAAGCAGCTCTTAGCCTTCCAATTAGTGCATCAAGGCTACCCCAAGCCTGTTTTAACGGACACGCACA</genome_strand>
        <mrna_strand>TAAAAAAACAAATGTGATCAGAATTAAATTTGAATTCGCGTCACATTAGATTCAGGTAATTCACAATTACTGACTACACTTAAAATTGAAAATGAATAGTATTGTACTATACTGTTGTATTAGGAGCAGTAGGTGGTTGCTGACCAATAACACCGTCTCCGCCACTGCCATCACCACCACCACCACTACCTCCTCCTTCTGCCGTGATAGCACTGCCAGCTGTCGCGACCGAACTCGATGTACTCGGCCGTTTACGTTTCTTCTTTTCATAAGGAATTCCTCTAGCTTTTGCTTGACTTTCTCTAACTTCCCTTAAATAAATTCTAACAGCTTTAGCACCAAATGGATTTGATTCAGGTTTTCCCCCATTTTCTTCATAAGCAGCTCTTAGCCTTCCAATTAGTGCATCAAGGCTACCCCAAGCCTGTTTCAACGGACACGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398373" ref_strand="+" ref_description="SGN-E398373 [TUS-34-I8](-)">
      <seq>ccgttaaaacaggtttggggtagccttgatgcattatttggaaggctaagagctgttcttgaagaaaatgggggaaaacctgaatcaaatccatttggtgccaaagctgttagaatttatttaagggaagttagagaaagtcaagcaaaagctagaggaattccttatgaaaagaagaaacgtaaacggcccagtacatccagttcggtcgcgacagctggaagtgctgtcgcggcagaaggaggaagtagtagtggtggtggtgatggcagtggcggagacggtgttattggtcaacaaccacctactgatcctaatacaacagtatagtataatactattcattttcaattttaagtttagttagtaattgtgaattacttgaatcttatatgacgcgaattcaaatttagttctgatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="5425" stop="6448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5725" g_stop="6147" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="423" r_length="423" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E398373" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5725" e_stop="6147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTAGTTCTGATCAC</genome_strand>
        <mrna_strand>CCGTTAAAACAGGTTTGGGGTAGCCTTGATGCATTATTTGGAAGGCTAAGAGCTGTTCTTGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTAGTTCTGATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E599106" ref_strand="+" ref_description="SGN-E599106 [52086]">
      <seq>ggccggtacgtacggttacgaaggcggcggatctgctccgccaccaagtggcggaggaggtggcgggtatggatcgggcggtggaggatacggtgcttcaggtggtggttacggaggcagtggtagaggtggtggtggtggtggtcgaggaggtggaggatatggtggtggttcccataatcgaggaggtggcggtggataccaaggaggagatcgtggaggtggcggtggataccaaggaggagatcgtggaggtggcggtggatatcaaggaggagatcgtggaggtggtggtggataccaaggaggagatcgtggaggtagcggtggataccagggaggagatcgtggaggtcgcggcggcggtcgtggtggaggaagtggtaaggaaggtgattggcgttgccctaacccaaggtggcaagaatcaagcaaaaacgaggatacaaagaccagtggccttggagcataaagctatacaccgacgaacagggaaataaccaaggagatgcagttctgtcgtacgaagatccttctgcagctcactctgccggcggctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14203" stop="16248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14503" g_stop="14708" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14709" i_stop="14779" i_length="71">
            <donor d_prob="1.000" d_score="0.78"/>
            <acceptor a_prob="1.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14780" g_stop="15011" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="417" r_length="232" r_score="0.949"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15012" i_stop="15803" i_length="792">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15804" g_stop="15948" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="562" r_length="145" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E599106" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.037" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14503" e_stop="14708"/>
          <exon e_start="14780" e_stop="15011"/>
          <exon e_start="15804" e_stop="15948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGGTACGTACGGTTACGAAAGCGGCGGATCTGCTCCGCCACCAAGTGGCGGAGGAGGCGGTGGGTATGGATCGGGTGGCGGAGGATATGGTGGTTCAGGTGGTGGTTACGGAGGCAGTGGCGGATCATACGGTGGCGGCGGTAGAGGTGGCGGAGGTCGAGGAGGTGGAGGTGGAGGCTATGGTGGTAGCTCCCATAATCGAGGTATCTATTTGAATTATTACACTATGTCTGTACTTTGAATGAGTTTTATTCACATGTGGTTCTATTTACAGGAGGTGGAGGTGGATACCATGGAGGAGATCGTGGAGGTAGCGGTGGATACCAAGGAGGAGATCGTGGAGGTGGCGGTGGATACCAAGGAGGAGATCGTGGCGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTAGTGGTGGATACCAAGGAGGAGATCGCGGAGGTCGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTAGAACTGGTTCTTATGGTGGTAGTCAGGGAAGAGATGGTGGTGGTTATGCCCAAGGTCCTCCTCATGCTCCTCCATCTTATGGGGCTGCTGATAGCAACTATCCACCACCTTCTAATACTTACGGTGGAAACCCCGATGCAGTTCCCCCGCCTGCGAGTTATGTTGGTGGACCTGCATCTTATCCCCCTTCGTATGGTGCCCCTGGTGGCTATGGTGGGGATACACCAGCTGATGCTCGTGGGGGTGGACGGGGTGGTCCACCAGGTGGATATGATGGGGGATATGGCGGTGGTGCCCGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAAGTAATATGCAGATTTCTTTCGGTTATGATTCTCAGTATCAGATTCATTCTGTCTTGTAGCATTTACGTTGTTCTTCTCTTAACTTCACGTGAACCCTTGCTGTGTTAATGTGGTATTGATGCCTGAGCTTAGACAGAAGGACAACCCAATACTTGCTACTTGATTTTGCAGACTAATTGCCATTGAATTGTGACAATAAAGAAGCTTACTTTTAATGACTTTCTCTTAGCATATATACCAGGGTAAGTGCTTAAGTTTCTTTTTAACGTGTAGGTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTT</genome_strand>
        <mrna_strand>GGCCGGTACGTACGGTTACGAAGGCGGCGGATCTGCTCCGCCACCAAGTGGCGGAGGAGGTGGCGGGTATGGATCGGGCGGTGGAGGATACGGTGCTTCAGGTGGTGGTTACGGAGGCAGT-G--G-T-AGA-GGTGGTGGTGGT---GGTGG------TCGAGGAGGTGGA-G--GA---TATGGTGGTGGTTCCCATAATCGAG.......................................................................GAGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTGGCGGTGGATATCAAGGAGGAGATCGTGGAGGTGGTGGTGGATACCAAGGAGGAGATCGTGGAGGTAGCGGTGGATACCAGGGAGGAGATCGTGGAGGTCGCGGCGGCGGTCGTGGTGGAGGAAGTGGTAAGGAAGGTGATTGGCGTTGCCCTAACCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAAGAATCAAGCAAAAACGAGGATACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACCGACGAACAGGGAAATAACCAAGGAGATGCAGTTCTGTCGTACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305767" ref_strand="+" ref_description="SGN-E305767 [cLEX-14-K6]">
      <seq>gcggtggcggtggataccaaggaggagatcgtggaggtagtggtggataccaaggaggagatcgcggaggtcgcggcggcggtcgtggtggaggaagtggtaaggaaggtgattggcgttgccctaacccaaggttgcaagaatcaagcaaaaacgaggttacaaagaccagtggccttggagcataaagctatacacagacgatcaaggaaataacaaaggagatgcagttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcacgacttcagaggttacaaaatcactgtagcgatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgcggaggttatggtggtggtggtggcgggcgcanggataactacagagacggtggaggttccggcccagatagacagtttcatggtggaaatcgttcacgtccttattgagttccagtcgagcattttatgtactaaaatttgtggtgggagggttttttagttagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="14579" stop="17754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14879" g_stop="15011" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15012" i_stop="15803" i_length="792">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15804" g_stop="15954" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="284" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="366" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17224" g_stop="17454" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="597" r_length="231" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E305767" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14879" e_stop="15011"/>
          <exon e_start="15804" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTAGTGGTGGATACCAAGGAGGAGATCGCGGAGGTCGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTAGAACTGGTTCTTATGGTGGTAGTCAGGGAAGAGATGGTGGTGGTTATGCCCAAGGTCCTCCTCATGCTCCTCCATCTTATGGGGCTGCTGATAGCAACTATCCACCACCTTCTAATACTTACGGTGGAAACCCCGATGCAGTTCCCCCGCCTGCGAGTTATGTTGGTGGACCTGCATCTTATCCCCCTTCGTATGGTGCCCCTGGTGGCTATGGTGGGGATACACCAGCTGATGCTCGTGGGGGTGGACGGGGTGGTCCACCAGGTGGATATGATGGGGGATATGGCGGTGGTGCCCGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAAGTAATATGCAGATTTCTTTCGGTTATGATTCTCAGTATCAGATTCATTCTGTCTTGTAGCATTTACGTTGTTCTTCTCTTAACTTCACGTGAACCCTTGCTGTGTTAATGTGGTATTGATGCCTGAGCTTAGACAGAAGGACAACCCAATACTTGCTACTTGATTTTGCAGACTAATTGCCATTGAATTGTGACAATAAAGAAGCTTACTTTTAATGACTTTCTCTTAGCATATATACCAGGGTAAGTGCTTAAGTTTCTTTTTAACGTGTAGGTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCAC</genome_strand>
        <mrna_strand>GCGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTAGTGGTGGATACCAAGGAGGAGATCGCGGAGGTCGCGGCGGCGGTCGTGGTGGAGGAAGTGGTAAGGAAGGTGATTGGCGTTGCCCTAACCCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCANGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278634" ref_strand="+" ref_description="SGN-E278634 [cLER-10-N20]">
      <seq>cggaatacaggaggtggttatggtagttctccagctgaggctccggtaaaggtcaagcaatgcgatgagaattgtggagatctctgtgacaacgcaagaatatatatctcaaatttgcctcctgatgtgaccgtcgaagaacttagagaactttttgggagcattggacaagttgcaagaatcaagcaaaaacgaggttacaaagaccagtggccttggagcataaagctatacacagacgatcaaggaaataacaaaggagatgcagttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcacgacttcagaggttacaaaatcactgtagcgatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15060" stop="16426"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15360" g_stop="15530" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15531" i_stop="15803" i_length="273">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15804" g_stop="15954" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="322" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="404" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E278634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15360" e_stop="15530"/>
          <exon e_start="15804" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAAGTAATATGCAGATTTCTTTCGGTTATGATTCTCAGTATCAGATTCATTCTGTCTTGTAGCATTTACGTTGTTCTTCTCTTAACTTCACGTGAACCCTTGCTGTGTTAATGTGGTATTGATGCCTGAGCTTAGACAGAAGGACAACCCAATACTTGCTACTTGATTTTGCAGACTAATTGCCATTGAATTGTGACAATAAAGAAGCTTACTTTTAATGACTTTCTCTTAGCATATATACCAGGGTAAGTGCTTAAGTTTCTTTTTAACGTGTAGGTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG</genome_strand>
        <mrna_strand>CGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAA.................................................................................................................................................................................................................................................................................GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276060" ref_strand="+" ref_description="SGN-E276060 [cLEN-12-K6]">
      <seq>ggagatctctgtgacaacgcaagaatatatatctcaaatttgcctcctgatgtgaccgtcgaagaacttagagaactttttgggagcattggacaagttgcaagaatcaagcaaaaacgaggttacaaagaccagtggccttggagcataaagctatacacagacgatcaaggaaataacaaaggagatgcagttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcacgacttcagaggttacaaaatcactgtagcgatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgcggaggttatggtggtggtggtggcgggcgcagggataactacagagacggtggaggttccggcccagatagacagtttcatggtggaaatcgttcacgtccttattgagttccagtcgagcattttatgtactaaaatttgtggtgggagggttttttagttagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttaactcacttccatttgagcaatatccaccttctcttctttctttctgctacttggggttgcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15135" stop="17811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15435" g_stop="15530" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15531" i_stop="15803" i_length="273">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15804" g_stop="15954" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="247" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="329" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17224" g_stop="17511" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="617" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E276060" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15435" e_stop="15530"/>
          <exon e_start="15804" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAAGTAATATGCAGATTTCTTTCGGTTATGATTCTCAGTATCAGATTCATTCTGTCTTGTAGCATTTACGTTGTTCTTCTCTTAACTTCACGTGAACCCTTGCTGTGTTAATGTGGTATTGATGCCTGAGCTTAGACAGAAGGACAACCCAATACTTGCTACTTGATTTTGCAGACTAATTGCCATTGAATTGTGACAATAAAGAAGCTTACTTTTAATGACTTTCTCTTAGCATATATACCAGGGTAAGTGCTTAAGTTTCTTTTTAACGTGTAGGTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTA</genome_strand>
        <mrna_strand>GGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAA.................................................................................................................................................................................................................................................................................GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374285" ref_strand="+" ref_description="SGN-E374285 [TUS-33-H4](-)">
      <seq>cagtggccttggggcataaagctatactcagacgatcaaggaaataacaaaggagatgcagttctgtcatacgaaaatccttttgcagctcactctgccggcgggtttttcaataatcacgacttcaaaggttacaaaatcactgtaacgatgggtgaaaagtttgcaccaaaaccgcctccggcatttggttttggccgtggcggttgcggaggttatggtggtggtggtggcgggggcagggataactacaaagacggtggaggttccggcccaaataaacagtttcatggtggaaatcgttcacgtccttattgagttccagtcgagcattttatgtaataaaatttgtggtgggagggttttttagttagttccatttcaaaatatactctctgtgacttaaaagaggtaggttgttaactcccttccctttgagcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15540" stop="46221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15840" g_stop="15954" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.877" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="197" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17468" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="442" r_length="245" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17469" i_stop="17941" i_length="473">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.817" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17942" g_stop="17969" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="470" r_length="28" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E374285" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15840" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17468"/>
          <exon e_start="17942" e_stop="17969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATTAATGTTTGGATCAGAAAAAAGACATCCGACCACACAGCTATA</genome_strand>
        <mrna_strand>CAGTGGCCTTGGGGCATAAAGCTATACTCAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAAATCCTTTTGCAGCTCACTCTGCCGGCGGGTTTTTCAATA...................................................................................ATCACGACTTCAAAGGTTACAAAATCACTGTAACGATGGGTGAAAAGTTTGCACCAAAACCGCCTCCGGCATTTGGTTTTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTTGCGGAGGTTATGGTGGTGGTGGTGGCGGGGGCAGGGATAACTACAAAGACGGTGGAGGTTCCGGCCCAAATAAACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTAATAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAAATATACTCTCTGTGACTTAAAAGAGGTAGGTTGTTAACTCCCTTCCCTTTGAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421036" ref_strand="-" ref_description="SGN-E421036 [STM-32-M3]">
      <seq>gttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcatgacttcagaggttacaaaatcactgtagcaatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgaggaggttatggtggtgggcgcagggataactacagagacggtggaggttctggcccagatagacagtctcatggtggaaaccgttcacgtccttattgagttccagtcaagcattttatgtactaaaatttgtggtgggaggggtttttaattagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttcacttactttcacttgagcaatatccaccttttctcctttctttctgctacttggggttgcggaaggggtgagttttttctagttcagaaccttttttgatatgttgaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatattcaggtgagtgttactactgtggaaaaccgattactctggaatgatgtttggtctctttaggtgattttgcttgcatgttggaaatgctagcatctctgctttagaccttgtataatgaattttttcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15600" stop="35690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15900" g_stop="15954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="137" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17763" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="654" r_length="517" r_score="0.907"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17764" i_stop="17941" i_length="178">
            <donor d_prob="0.000" d_score="0.82"/>
            <acceptor a_prob="0.817" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17942" g_stop="17949" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="662" r_length="8" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E421036" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.035" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421036" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15900" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17763"/>
          <exon e_start="17942" e_stop="17949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTG-GGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATTAATGTTTGGATCAGAAAAAAGA</genome_strand>
        <mrna_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCATGACTTCAGAGGTTACAAAATCACTGTAGCAATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGAGGAGGTTA------TGGTGGT---GGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCTGGCCCAGATAGACAGTCTCATGGTGGAAACCGTTCACGTCCTTATTGAGTTCCAGTCAAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGGTTTTTAATTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTCACTTACTTTCACTTGAGCAATATCCACCTTTTCTCCTTTCTTTCTGCTACTTGGGGTTGCGGAAGGGGTGAGTTTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTC--------T--G--GAATGATGTTTGGTCTCTTTAGGTGATTTTGCTTGCATGTTGGAAATGCTAGCATCTCTGCTTTAGA--CCTTGTATAATGAATTT-TTTCCTAAAAAAA..................................................................................................................................................................................AAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E421035" ref_strand="+" ref_description="SGN-E421035 [STM-32-M3]">
      <seq>gttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcatgacttcagaggttacaaaatcactgtagcaatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgaggaggttatggtggtgggcgcagggataactacagagacggtggaggttctggcccagatagacagtctcatggtggaaaccgttcacgtccttattgagttccagtcaagcattttatgtactaaaatttgtggtgggaggggtttttaattagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttcacttactttcacttgagcaatatccaccttttctcctttctttctgctacttggggttgcggaaggggtgagttttttctagttcagaaccttttttgatatgttgaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatattcaggtgagtgttactactgtggaaaaccgattactctggaatgatgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15600" stop="17956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15900" g_stop="15954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="137" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17651" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="556" r_length="419" r_score="0.935"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17652" i_stop="17922" i_length="271">
            <donor d_prob="0.188" d_score="0.98"/>
            <acceptor a_prob="0.891" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17923" g_stop="17935" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="569" r_length="13" r_score="0.846"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E421035" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E421035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15900" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17651"/>
          <exon e_start="17923" e_stop="17935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTG-GGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATTAATGTTTG</genome_strand>
        <mrna_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCATGACTTCAGAGGTTACAAAATCACTGTAGCAATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGAGGAGGTTA------TGGTGGT---GGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCTGGCCCAGATAGACAGTCTCATGGTGGAAACCGTTCACGTCCTTATTGAGTTCCAGTCAAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGGTTTTTAATTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTCACTTACTTTCACTTGAGCAATATCCACCTTTTCTCCTTTCTTTCTGCTACTTGGGGTTGCGGAAGGGGTGAGTTTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCT-...............................................................................................................................................................................................................................................................................GGAATGATGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407154" ref_strand="+" ref_description="SGN-E407154 [PPI-6-M15]">
      <seq>gttctgtcatacgaagatccttctgcagctcactctgccggcggctttttcaataatcatgacttcagaggttacaaaatcactgtagcaatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgaggaggttatggtggtgggcgcagggataactacagagacggtggaggttctggcccagatagacagtctcatggtggaaaccgttcacgtccttattgagttccagtcaagcattttatgtactaaaatttgtggtgggaggggtttttaattagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttcacttactttcacttgagcaatatccaccttttctcctttctttctgctacttggggttgcggaaggggtgagttttttctagttcagaaccttttttgatatgttgaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatattcaggtgagtgttactactgtggaaaaccgattactctggaatgatgtttggtctctttaggtgattttgcttgcatgttggaaatgctagcatctctgctttagaccttgtataatgaatttgtttcctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15600" stop="18059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15900" g_stop="15954" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="137" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.80"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17770" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="662" r_length="525" r_score="0.898"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E407154" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.033" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15900" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTG-GGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTG</genome_strand>
        <mrna_strand>GTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCATGACTTCAGAGGTTACAAAATCACTGTAGCAATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGAGGAGGTTA------TGGTGGT---GGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCTGGCCCAGATAGACAGTCTCATGGTGGAAACCGTTCACGTCCTTATTGAGTTCCAGTCAAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGGTTTTTAATTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTCACTTACTTTCACTTGAGCAATATCCACCTTTTCTCCTTTCTTTCTGCTACTTGGGGTTGCGGAAGGGGTGAGTTTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTC--------T--G--GAATGATGTTTGGTCTCTTTAGGTGATTTTGCTTGCATGTTGGAAATGCTAGCATCTCTGCTTTAGA--CCTTGTATAATGAATTTGTTTCCTAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713871" ref_strand="+" ref_description="SGN-E713871 [FB09DF01]">
      <seq>cgcttagatccttctgcagctcactctgccggcggctttttcaataatcacgacttcagaggttacaaaatcactgtagcgatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgcggaggttatggtggtggtggtggcgggcgcagggataactacagagacggtggaggttccggcccagatagacagtttcatggtggaaatcgttcacgtccttattgagttccagtcgagcattttatgtactaaaatttgtggtgggagggttttttagttaattccatttcaagatatactctctgtgacttaaatggaggtaggctgttaactcacttccatttgagcaatatccaccttctcttctttctttctgctacttggggttgcgtaaggggtggggttttctagttcagaaccttttttgatatgttgaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatattcaggtgagtgttactactgtggaaaaccgattactctggtaatttaagctgaatgatgtttggtctctttaagtgattttgcttgcattttggaaatgctagcatctctgcactagaccccttgtataatgaatttgtttcctatataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15614" stop="46221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15909" g_stop="15954" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="0.91"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="128" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17763" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="669" r_length="541" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17764" i_stop="17941" i_length="178">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.817" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17942" g_stop="17960" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="670" r_stop="688" r_length="19" r_score="0.526"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E713871" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15909" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17763"/>
          <exon e_start="17942" e_stop="17960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAA-AGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATTAATGTTTGGATCAGAAAAAAGACATCCGACCAC</genome_strand>
        <mrna_strand>CGCTTAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAATTCCATTTCAAGATATACTCTCTGTGACTTAAATGGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATAAA..................................................................................................................................................................................AAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713621" ref_strand="+" ref_description="SGN-E713621 [FB09AF02]">
      <seq>cgaagatccttctgcagctcactctgccggcggctttttcaataatcacgacttcagaggttacaaaatcactgtagcgatggctgaaaagtctgcaccaaagccgcctccggcatttggttctggccgtggcggtcgcggaggttatggtggtggtggtggcgggcgcagggataactacagagacggtggaggttccggcccagatagacagtttcatggtggaaatcgttcacgtccttattgagttccagtcgagcattttatgtactaaaatttgtggtgggagggttttttagttagttccatttcaagatatactctctgtgacttaaaagaggtaggctgttaactcacttccatttgagcaatatccaccttctcttctttctttctgctacttggggttgcgtaaggggtggggttttctagttcagaaccttttttgatatgttgaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatattcaggtgagtgttactactgtggaaaaccgattactctggtaatttaagctgaatgatgtttggtctctttaagtgattttgcttgcattttggaaatgctagcatctctgcactagaccccttgtataatgaatttgtttcctatataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="15611" stop="18062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15911" g_stop="15954" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16038" g_stop="16119" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="126" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17224" g_stop="17758" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="661" r_length="535" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="679"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E713621" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713621" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15911" e_stop="15954"/>
          <exon e_start="16038" e_stop="16119"/>
          <exon e_start="17224" e_stop="17758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATAGTACAAACTAGACCCAAATTTATTCAATTGATTTTACGCAGTATATTATTTACATGCTGACCATAAAATATAATCATCATCAGATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGGGTGAGCCTTCTTAAATTACTGCATACTCTTTCTACTCCATTGCATTTTACCTCCAGTTGTGCTACAATTCACAGTTTATGTCAACTCACAACATGTCTTAGTGGTTATGCTGTGGAATGTATGCAGAGTTAGCAAGTGTGTTTAACTAGATAGTGGATGTATGGTTATTTTTATGAATTCTCCAGAGTTTTGGTTGTTTATCAAGTAGATGATCAGAGTTGTTCTTGCATCTGATGTTGACTCTAATTGCTGTGCCAAATTTCATACTAAAGTTGCATGCCTAAAATTCATACTTGATCGCATAGGGTGTCTGTATTGAAGTTTAATTTCAATAATTATTTTCAGTAAATTGTTAACATCATTGATACATTGATTTGTTCCCAGAGAAAAGCGAATTAAGCAATCAAATTTCATCTCTATAACTTGGTACTACATTTGTCCTTTATGAGGTGCATGGGAACCCGGTTAATCATAATTGTGTGGCTTCATTAGTAAACATTTTTTCTTTATCCTGCAAAAATATATTCATCAGCATCATCTATGTATATTTCAATGTAAAACTGTAAAGTTACATATTTCAATAGTGCTTTCAAGAATTAGTGTTTTTGTAATTTTTTTTGCATGTTGTATGTTGTAATTGTGTTTTTAATCGATGTCCATTTTTGCTACTTGAAAATCCACTTGCTGATTGACACCCTATGCATTCTTCCTGCCCTATGTTCTTTCTATTGCCATTTAGAACTGTTTATATATTTTATTGGCTCAAGGTTTAGAAAATGTTTAATCTATTGGATTGAATGAAGAATATGTTGTTTCTTTTATATTATATAGTTCCATCGGGTTAATGATATATTTGGCTGGCTTTATTTAAGCTGAGGGTATATCGGAAACCACCCCTCTATTTCTACGAGATAGGGTAAGGTCTGCGTAGTCTACTACCCTCCTAGACCCTCTTGTGGGATTGCACTGGTTATGTTGTTATTTGTTGGGTTAAATTTATAAATGGGATGGGGGACCTTTTGTGTATGCTGAACTTACGACTCCCTGTGCTAACCTGTATAGTAAATATATCTCTTATGCTCATGTCTGTCTATACTTTGACAGCCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTAT</genome_strand>
        <mrna_strand>CGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA...................................................................................ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E593684" ref_strand="+" ref_description="SGN-E593684 [36920]">
      <seq>atttcaagatatactctctgtgacttaaaagaggtaggctgttcacttactttcacttgagcaatatccaccttttctccttttctttctgctacttggggttgcggaaggggtgagttttttctagttcagaaccttttttgatatgttaaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatactcaggtgagtgttactactgtggaaaaccgattactctggaatgatgtttggtctctttaggtgattttgcttgcatgttggaaatgctagcatctctgcattagaccttggtataatgaatttgtttcctatatgatgttgctgttaattacttgaactgttttcttttactgtgtatctgctagttcagtttctcttccatagaagaattttgagacaagtctcttatacttccgcatttttcagcacaaatggcggagtacaatggtgaaatacttgctactttatttgtagggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17105" stop="18227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17405" g_stop="17927" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E593684" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.025" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17405" e_stop="17927"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTC-TTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTG-GGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATT</genome_strand>
        <mrna_strand>ATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTCACTTACTTTCACTTGAGCAATATCCACCTTTTCTCCTTTTCTTTCTGCTACTTGGGGTTGCGGAAGGGGTGAGTTTTTTCTAGTTCAGAACCTTTTTTGATATGTTAAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATACTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTC--------T--G--GAATGATGTTTGGTCTCTTTAGGTGATTTTGCTTGCATGTTGGAAATGCTAGCATCTCTGCATTAGA-CCTTGGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGAACTGTTTTCTTTTACTGTGTATCTGCTAGTTCAGTTTCTCTTCCATAGAAGAATTTTGA-GACAAGTCTCTTATACT-TCCGCATTTTTCAGCACAAATGGCGGAGTACAATGGTGAAATACTTGCTACTTTATTTGTAGGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E594295" ref_strand="+" ref_description="SGN-E594295 [37543]">
      <seq>atttcaagatatactctctgtgacttaaaagaggtaggctgttcacttactttcacttgagcaatatccaccttttctccttttctttctgctacttggggttgcggaaggggtgagttttttctagttcagaaccttttttgatatgttaaatgttttgatagaggcgattggatattctgcaaattgctgctaaggtaggtgaaatactcaggtgagtgttactactgtggaaaaccgattactctggaatgatgtttggtctctttnaggtgattttgcttgcatgttggaaatgctagcatctctgcattagaccttgtataatgaatttgtttcctatatgatgttgctgttaattacttgaactgttttcttttactgtgtatctgctagttcagtttctcttccatagaagaattttgagacaagtctcttatacttccgcatttttcagcacaaatggcggagtacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="17105" stop="18159"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17405" g_stop="17893" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E594295" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.027" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E594295" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17405" e_stop="17893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTC-TTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTG-GGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAA-GTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAA</genome_strand>
        <mrna_strand>ATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTCACTTACTTTCACTTGAGCAATATCCACCTTTTCTCCTTTTCTTTCTGCTACTTGGGGTTGCGGAAGGGGTGAGTTTTTTCTAGTTCAGAACCTTTTTTGATATGTTAAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATACTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTC--------T--G--GAATGATGTTTGGTCTCTTTNAGGTGATTTTGCTTGCATGTTGGAAATGCTAGCATCTCTGCATTAGA--CCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGAACTGTTTTCTTTTACTGTGTATCTGCTAGTTCAGTTTCTCTTCCATAGAAGAATTTTGA-GACAAGTCTCTTATACT-TCCGCATTTTTCAGCACAAATGGCGGAGTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546820" ref_strand="+" ref_description="SGN-E546820 [TUS-70-G3]">
      <seq>attcggccttaatatttccaccagaaggcagaatggtactacagacaatttcagatgttggtttcatgtttcatgtgtttgttcttggagttcaagtagatccaacaatgctgagaagagcagggcgaaacgcggttctaataggtgtttcctcttttcttatgccttttgcacttggaggattagcctgttatgtattacctcatttgactgtcatagatgacgccacagcgcatttcttgcctttgttatctataattaactctgcttcattcttccctgtgatcactagccttcttagtgaccttaagattctaaattcagaaattggtcgaatagctacattagcctccttggttaacgacggttgtatatatgcttcttccatacttttaacaacaatagatgcatcatcaaattattccaagtggaatggagtattggccattgcatggataggcacattcctgatagtaatcgtgtttgctgtaaggccattagtgaaacatatcgctaggactataccggaaaaaggggctatgaaggaaagccattttctaatgatagcggtgttagctctcctgtgtggatttgtggcccagtctcttggacagcctcctgctgttggtacttttattttgggagtagtggtgccagagggaccgcctttgggctcatcgatggtctacaagattgattctttttgtactggattgctgcttcctgctaagtttgctatcagtgggttgacattggacatattctcccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19764" stop="21133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20064" g_stop="20833" g_length="770"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="770" r_length="770" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E546820" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546820" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20064" e_stop="20833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGGCCTTAATATTTCCACCAGAAGGCAGAATGGTGCTACAGACAATTTCAGATGTTGGTTTCATGTTTCATGTGTTTGTTCTTGGAGTTCAAGTAGATCCAACAATGCTGAGAAGAGCAGGGCGAAACGCGGTTCTAATAGGTGTTTCCTCTTTTTTTATGCCTTTTGCACTTGGAGGATTAGCCTGTTATGTATTACCTTATTTGACTGTCATAGATGACGCGACAGCGCATTTCTTGCCTTTGTTATCTATAATTAACTCTGCTTCATTCTTTCCTGTGATCACTAGCCTTCTTAGCGACCTTAAGATTCTAAATTCAGAAATTGGTCGAATAGCTACATTAGCCTCCTTGGTTAATGACGGTTGTATATATGCTTCTTCCATACTTTTAACAACAATAGATGCATCATCAAATTATTCCAAGTGGAATGGAGTATTGGCCATTGCATGGATAGGCACATTCCTGATAGTAATCGTGTTTGCTGTAAGGCCATTAGTGAAACATATCGCTAGGACTATACCGGAAAGAGGGGCTATGAAGGAAAGCCATTTTCTAATGATAGCTGTCTTAGCTCTCCTCTGTGGATTTGTGGCCCAGTCTCTTGGACAGCCTCCTGCTGTTGGTACTTTTATTTTGGGAGTAGTGGTGCCAGAGGGACCGCCTTTGGGCTCATCGATGGTCTACAAGATTGATTCTTTTTGTACTGGATTGCTGCTTCCTGCTAAGTTTGCTATCAGTGGGTTGACATTGGACATATTCTCCCTA</genome_strand>
        <mrna_strand>ATTCGGCCTTAATATTTCCACCAGAAGGCAGAATGGTACTACAGACAATTTCAGATGTTGGTTTCATGTTTCATGTGTTTGTTCTTGGAGTTCAAGTAGATCCAACAATGCTGAGAAGAGCAGGGCGAAACGCGGTTCTAATAGGTGTTTCCTCTTTTCTTATGCCTTTTGCACTTGGAGGATTAGCCTGTTATGTATTACCTCATTTGACTGTCATAGATGACGCCACAGCGCATTTCTTGCCTTTGTTATCTATAATTAACTCTGCTTCATTCTTCCCTGTGATCACTAGCCTTCTTAGTGACCTTAAGATTCTAAATTCAGAAATTGGTCGAATAGCTACATTAGCCTCCTTGGTTAACGACGGTTGTATATATGCTTCTTCCATACTTTTAACAACAATAGATGCATCATCAAATTATTCCAAGTGGAATGGAGTATTGGCCATTGCATGGATAGGCACATTCCTGATAGTAATCGTGTTTGCTGTAAGGCCATTAGTGAAACATATCGCTAGGACTATACCGGAAAAAGGGGCTATGAAGGAAAGCCATTTTCTAATGATAGCGGTGTTAGCTCTCCTGTGTGGATTTGTGGCCCAGTCTCTTGGACAGCCTCCTGCTGTTGGTACTTTTATTTTGGGAGTAGTGGTGCCAGAGGGACCGCCTTTGGGCTCATCGATGGTCTACAAGATTGATTCTTTTTGTACTGGATTGCTGCTTCCTGCTAAGTTTGCTATCAGTGGGTTGACATTGGACATATTCTCCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362754" ref_strand="+" ref_description="SGN-E362754 [cLPP-2-C9]">
      <seq>ttaatatttccaccaaaaggcaaaatggtactacagacaatttcagatgttggtttcatgtttcatgtgtttgttcttggagttcaagtagatccaacaatgctgagaagagcagggcgaaacgcggttctaataggtgtttcctcttttcttatgccttttgcacttggaggattagcctgttatgtattacctcatttgactgtcatagatgacgccacagcgcatttcttgcctttgttatctataattaactctgcttcattcttccctgtgatcactagccttcttagtgaccttaagattctaaattcagaaattggtcgaatagctacattagcctccttggttaacgacggttgtatatatgcttcttccatacttttaacaacaatagatgcatcatcaaattattccaagtggaatggagtattggccattgcatggataggcacattcctgatagtaatcgtgtttgctgtaaggccattagtgaaacatatcgctaggactataccggaaaaaggggctatgaaggaaagccattttctaatgatagcggtgttagctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="19772" stop="20943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20072" g_stop="20643" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E362754" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20072" e_stop="20643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATATTTCCACCAGAAGGCAGAATGGTGCTACAGACAATTTCAGATGTTGGTTTCATGTTTCATGTGTTTGTTCTTGGAGTTCAAGTAGATCCAACAATGCTGAGAAGAGCAGGGCGAAACGCGGTTCTAATAGGTGTTTCCTCTTTTTTTATGCCTTTTGCACTTGGAGGATTAGCCTGTTATGTATTACCTTATTTGACTGTCATAGATGACGCGACAGCGCATTTCTTGCCTTTGTTATCTATAATTAACTCTGCTTCATTCTTTCCTGTGATCACTAGCCTTCTTAGCGACCTTAAGATTCTAAATTCAGAAATTGGTCGAATAGCTACATTAGCCTCCTTGGTTAATGACGGTTGTATATATGCTTCTTCCATACTTTTAACAACAATAGATGCATCATCAAATTATTCCAAGTGGAATGGAGTATTGGCCATTGCATGGATAGGCACATTCCTGATAGTAATCGTGTTTGCTGTAAGGCCATTAGTGAAACATATCGCTAGGACTATACCGGAAAGAGGGGCTATGAAGGAAAGCCATTTTCTAATGATAGCTGTCTTAGCTCT</genome_strand>
        <mrna_strand>TTAATATTTCCACCAAAAGGCAAAATGGTACTACAGACAATTTCAGATGTTGGTTTCATGTTTCATGTGTTTGTTCTTGGAGTTCAAGTAGATCCAACAATGCTGAGAAGAGCAGGGCGAAACGCGGTTCTAATAGGTGTTTCCTCTTTTCTTATGCCTTTTGCACTTGGAGGATTAGCCTGTTATGTATTACCTCATTTGACTGTCATAGATGACGCCACAGCGCATTTCTTGCCTTTGTTATCTATAATTAACTCTGCTTCATTCTTCCCTGTGATCACTAGCCTTCTTAGTGACCTTAAGATTCTAAATTCAGAAATTGGTCGAATAGCTACATTAGCCTCCTTGGTTAACGACGGTTGTATATATGCTTCTTCCATACTTTTAACAACAATAGATGCATCATCAAATTATTCCAAGTGGAATGGAGTATTGGCCATTGCATGGATAGGCACATTCCTGATAGTAATCGTGTTTGCTGTAAGGCCATTAGTGAAACATATCGCTAGGACTATACCGGAAAAAGGGGCTATGAAGGAAAGCCATTTTCTAATGATAGCGGTGTTAGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546819" ref_strand="+" ref_description="SGN-E546819 [TUS-70-G3](-)">
      <seq>tttccgcatcacaatgctttacctaggtggtcctgatgatgatgaagcactcgcntattgctgcaggatgctagggcatccccacatcagcatgagtcttgtctggctcaaacattcgagtgacaatatcgagaagagtatggagtcacatatgatacaatggttcaaggctaataatgtggatgcagggagagtgagttaccaagaagaagtggtgaatgatgcagttgggacaactcaggttcttcgttcactcgaggacagttgtgatctttgtatagttggtagagaccacaaacagtccgagttaacactagggattaatgaatggatcgaatgtccagaattaggatttatcggagacatgttagctacttcggattatagtttttcattgctcgttgtgcaacaaacaccaccagggaccgagtttataaccacccagccactgcagcctgttgctagcagtttttattctggttcagataaatatagtcaacattctgcttcaggtaaatatagtcagcattctgcttcaggtaaatatagtcagcattctggttatggcccttttgggtagcaactcaagttgttttcctctttgatcaatgccaagaatgtagaaaataggttaaaggttactaaattgtaaattttgtcaaaattgtatgtagaaattagcaagtacaaagttcagttttactttttatgtacaatggaagtagtcactaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="21554" stop="22886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21854" g_stop="22595" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="740" r_length="740" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E546819" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21854" e_stop="22595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGCATCACAATGCTTTACCTAGGTGGTCCTGATGATGATGAAGCACTCGCCTATTGCTGCAGGATGCTAGGGCATCCCCACATCAGCATGAGTCTTGTCTGGCTCAAACATTCGAGTGACAATATCGAGAAGTGTATGGAGTCACATATGATACAGTGGTTCAAGGCTAATAATGTGGATGCAGGGAGAGTGAGTTACCAAGAAGAAGTGGTGAATGATGCAGTGGGGACAACTCAGGTTCTTCGTTCACTCGAGGACAGTTGTGATCTTTGTATAGTTGGTAGAGACCACAAACAGTCCGAGTTAACACTAGGGATTAATGAATGGATCGAATGTCCAGAATTAGGATTTATCGGAGACATGTTAGCTACTTCGGATTATAGTTTTTCATTGCTCGTTGTGCAACAAACACCACCAGGGACCGAGTTTATAAACACCCAGCCACTGCAGCCTGTTGCTAGCAGTTTTTATTCTGGTTCAGATAAATATAGTCAACATTCTGCTTCAGGTAAATATAGTCAGCATTCTGCTTCAGGTAAATATAGTCAGCATTCTGGTTATGGCCCTTTTGGGTAGCAACTCAAGTTGTTTTCCTCTTTGATCAATTCCAAGAATGTAGAAAATAGGTTAAAGGTTACTAAATTGTAAATTTTTGTCAAAAATTGTATGTAGAAATTAGCAAGTACAAAGTCCAGTTTTACTTTTTATGTATAATGGAAGTAGTCACTATTCAACTTG</genome_strand>
        <mrna_strand>TTTCCGCATCACAATGCTTTACCTAGGTGGTCCTGATGATGATGAAGCACTCGCNTATTGCTGCAGGATGCTAGGGCATCCCCACATCAGCATGAGTCTTGTCTGGCTCAAACATTCGAGTGACAATATCGAGAAGAGTATGGAGTCACATATGATACAATGGTTCAAGGCTAATAATGTGGATGCAGGGAGAGTGAGTTACCAAGAAGAAGTGGTGAATGATGCAGTTGGGACAACTCAGGTTCTTCGTTCACTCGAGGACAGTTGTGATCTTTGTATAGTTGGTAGAGACCACAAACAGTCCGAGTTAACACTAGGGATTAATGAATGGATCGAATGTCCAGAATTAGGATTTATCGGAGACATGTTAGCTACTTCGGATTATAGTTTTTCATTGCTCGTTGTGCAACAAACACCACCAGGGACCGAGTTTATAACCACCCAGCCACTGCAGCCTGTTGCTAGCAGTTTTTATTCTGGTTCAGATAAATATAGTCAACATTCTGCTTCAGGTAAATATAGTCAGCATTCTGCTTCAGGTAAATATAGTCAGCATTCTGGTTATGGCCCTTTTGGGTAGCAACTCAAGTTGTTTTCCTCTTTGATCAATGCCAAGAATGTAGAAAATAGGTTAAAGGTTACTAAATTGTAAA-TTTTGTC-AAAATTGTATGTAGAAATTAGCAAGTACAAAGTTCAGTTTTACTTTTTATGTACAATGGAAGTAGTCACTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E458289" ref_strand="+" ref_description="SGN-E458289 [cPRO-5-C2]">
      <seq>aaatgcacaaaaacatagaaatgaagacttatataagttgtctcattgtggttatattatcactactatcttcttttgctaatgcagaatctcacaaacatgattttactgttcaacaaactatggtaactaggctatgcagaaccaagaatataattacagtgaatggacaatttccagggccaaccttgacagttcgaaacggagatacagtggttgttactgttgttaatagagcacgttacaacgttactatccattggcatggaattcgtcaaatgcgaacaccatgggctgatgggcctgagtatgtaacacaattcccaataagaccaggaggatcttacacatatagatttactattgaaaacccagaaggtacattggggtggcatgctcacagcaaatgggttaaagctactgtttaatggggcattagtattttacctaaacaggggtctaattttgcttttttccttccccagaaaaaatttcctgttattcctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24006" stop="25272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24306" g_stop="24415" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="110" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24416" i_stop="24496" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24497" g_stop="24648" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="262" r_length="152" r_score="0.954"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24649" i_stop="24726" i_length="78">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24727" g_stop="24971" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="507" r_length="245" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E458289" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E458289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24306" e_stop="24415"/>
          <exon e_start="24497" e_stop="24648"/>
          <exon e_start="24727" e_stop="24971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGCACAAAAACATAGAAATGAAGAATTATATAAGTTGTCTCATTGTGGTTATATTATCACTACTATCTTCTTTTGCTAATGCAGAATCTCACAAACATGATTTTACTGTGAGTATACATTCACCTTTTAAAATATAATTTAGTAAATTATTCAACATTATCATGAAATATTTTTTATTTTTGGGACAGGTTCAAGAAACTAGTGTAACTAGGCTATGCAGAACCAAGAAAATAATTACAGTAAATGGACAATTTCCAGGGCCAACTTTGACAGTTCGAAACGGAGATACAGTGGTTGTTAATGTTGTTAATAGAGCACGTTACAACGTTACTATCCATTGGTAAATTACCTTATAAGTGACATATATTTTTTTTGCATGTCAGTGTATAGAACTTAAACTGTTGTAAGTTTCATGCAGGCATGGAATTCGTCAAATGCGAACACCATGGGCTGATGGGCCTGAGTATGTAACACAATGCCCAATTAGACCAGGAGGATCTTACACATATAGATTTACTATTGAAAATCAAGAGGGTACATTGTGGTGGCATGCTCACAGCAAATGGCTTAGAGCTACTGTTT-ATGGAGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG</genome_strand>
        <mrna_strand>AAATGCACAAAAACATAGAAATGAAGACTTATATAAGTTGTCTCATTGTGGTTATATTATCACTACTATCTTCTTTTGCTAATGCAGAATCTCACAAACATGATTTTACT.................................................................................GTTCAACAAACTATGGTAACTAGGCTATGCAGAACCAAGAATATAATTACAGTGAATGGACAATTTCCAGGGCCAACCTTGACAGTTCGAAACGGAGATACAGTGGTTGTTACTGTTGTTAATAGAGCACGTTACAACGTTACTATCCATTG..............................................................................GCATGGAATTCGTCAAATGCGAACACCATGGGCTGATGGGCCTGAGTATGTAACACAATTCCCAATAAGACCAGGAGGATCTTACACATATAGATTTACTATTGAAAACCCAGAAGGTACATTGGGGTGGCATGCTCACAGCAAATGGGTTAAAGCTACTGTTTAATGGGGCATTAG-TATTTTACCTAAACAGGGGTCTAATTTTGCTTTTTTCCTTCCCCAGAAAAAATTTCCTGTTATTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544537" ref_strand="+" ref_description="SGN-E544537 [TUS-66-O18]">
      <seq>atttccctttttcactgccccagaaagattttcctgttattcttggggaatggtggaacagagacattattgcagtacaaagacaagcacaatttactggagcagctcctaataattctgatgcatatactattaatggtcaacctggtgacctatacagatgctctacacaaggtactgtgaaatactctgtgaatccgggagaatcagttctcctgagggtgatcaacgctgcactcaatcaacaacttttcttctcagttgcaaaccacatgctcactgttgtgggtattgatgctacttacaacaagccttttacaactaatgtcattatggttggacctggacaaacaactaatgtaattctaactgctaatcagtcccctggccgatactacatggcctctcgtgcctatgccacagtcagaaatgggcaatttgataacacaactaccactgcaatccttgagtacaaaaatttgaaatcaggcgcgaattcaaggcctttattgcctcaacttcctgccttcaatgatacagccacagccactgcttttgctaacagattgaggggaactcctaacagtaatagagttcccaatcagattgatgacaacttgtttttcactgttggactaggcttagtgaactgtacccgtggcccaagatgtcaagggcctaataatacacgatttgctgctagcgtgaaacatgtttccttcatttttcctagtaaaacttcattactgcaggcctattaccaaaaaactcagggatttacacattggactttcacgcgttccaccggtgcaatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24627" stop="26249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24927" g_stop="24971" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24972" i_stop="25096" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25097" g_stop="25225" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="174" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25226" i_stop="25303" i_length="78">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25304" g_stop="25949" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="818" r_length="644" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E544537" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24927" e_stop="24971"/>
          <exon e_start="25097" e_stop="25225"/>
          <exon e_start="25304" e_stop="25949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTGGTAATGCTTCTTTCTCTTTATCTTTTCGATCTAACATATATACATTGACAATGAAAAAACACTTTTTGCACTATTTTTATTACACTCCGAATTCGATATGATTGTATGTTTTTCATTTTGTATAGGGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAGGTCCTTACTACATAAAACATAAACGATTTAACTCATATACACTACCCGTGAAATGACTAATTCAGAATTGAAATGCAGGTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCTCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACAACTACCACTGCAATCCTTGAGTACAAAAATTTGAAATCAGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACTGCTTTTGCTAACAGATTGAGGGGAACTCCTAACAGTAATAGAGTTCCCAATCAGATTGATGACAACTTGTTTTTCACTGTTGGACTAGGCTTAGTGAACTGTACCCGTGGCCCAAGATGTCAAGGGCCTAATAATACACGATTTGCTGCTAGCGTGAACAATGTTTCCTTCATTTTTCCTAGTAAAACTTCATTACTGCAGGCCTATTACCAAAAAACTCCAGGGATTTACACATTGGACTTTCCACGCGTTCCACCGGTGCAATTTGA</genome_strand>
        <mrna_strand>ATTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG.............................................................................................................................GGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAG..............................................................................GTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCTCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACAACTACCACTGCAATCCTTGAGTACAAAAATTTGAAATCAGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACTGCTTTTGCTAACAGATTGAGGGGAACTCCTAACAGTAATAGAGTTCCCAATCAGATTGATGACAACTTGTTTTTCACTGTTGGACTAGGCTTAGTGAACTGTACCCGTGGCCCAAGATGTCAAGGGCCTAATAATACACGATTTGCTGCTAGCGTGAAACATGTTTCCTTCATTTTTCCTAGTAAAACTTCATTACTGCAGGCCTATTACCAAAAAACT-CAGGGATTTACACATTGGACTTT-CACGCGTTCCACCGGTGCAATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307720" ref_strand="+" ref_description="SGN-E307720 [cLEY-16-C18]">
      <seq>tttccctttttcactgccccagaaagattttcctgttattcttggggaatggtggaacagagacattattgcagtacaaagacaagcacaatttactggagcagctcctaataattctgatgcatatactattaatggtcaacctggtgacctatacagatgctctacacaaggtactgtgaaatactctgtgaatccgggagaatcagttctcctgagggtgatcaacgctgcactcaatcaacaacttttcttctcagttgcaaaccacatgctcactgttgtgggtattgatgctacttacaacaagccttttacaactaatgtcattatggttggacctggacaaacaactaatgtaattctaactgctaatcagtcccctggccgatactacatggcctctcgtgcctatgccacagtcagaaatgggcaatttgataacacaactaccactgcaatccttgagtacaaaaatttgaaatcaggcgcgaattcaaggcctttattgcctcaacttcctgccttcaatgatacagccacagccactgcttttgctaacagattgagggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24628" stop="26004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24928" g_stop="24971" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24972" i_stop="25096" i_length="125">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25097" g_stop="25225" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="173" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25226" i_stop="25303" i_length="78">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25304" g_stop="25704" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="574" r_length="401" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E307720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E307720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24928" e_stop="24971"/>
          <exon e_start="25097" e_stop="25225"/>
          <exon e_start="25304" e_stop="25704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTGGTAATGCTTCTTTCTCTTTATCTTTTCGATCTAACATATATACATTGACAATGAAAAAACACTTTTTGCACTATTTTTATTACACTCCGAATTCGATATGATTGTATGTTTTTCATTTTGTATAGGGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAGGTCCTTACTACATAAAACATAAACGATTTAACTCATATACACTACCCGTGAAATGACTAATTCAGAATTGAAATGCAGGTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCTCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACAACTACCACTGCAATCCTTGAGTACAAAAATTTGAAATCAGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACTGCTTTTGCTAACAGATTGAGGGGA</genome_strand>
        <mrna_strand>TTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG.............................................................................................................................GGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAG..............................................................................GTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCTCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACAACTACCACTGCAATCCTTGAGTACAAAAATTTGAAATCAGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACTGCTTTTGCTAACAGATTGAGGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544536" ref_strand="+" ref_description="SGN-E544536 [TUS-66-O18](-)">
      <seq>tttccctagtaaaactccattactgcaggcctatacccaaaaaactccagggatttacacattggactttccacgcgttccaccggtgcaatttgattacacgggcaatgtttcacgtggactttggcaaccaacatttggaactaagttgtacaagctcaaatttggttctaatgtacaaattgtgttgcaagatactgctatcttctcaacagaggatcaccctatacatcttcacggttaccatttttgggtcgttggacaaggttttggtaactttaatgctcaaactgatactgccaactttaacttgaatgatccaccagtaaggaacacaatcgatgttcctgttggtggatgggcagtcatccgtttcgttgctgataatccaggggtttggttgttacactgccacattgattctcatttggcttggggcctagctatggcattcatcgtcgaaaatggaataggagagaaacagacaatggaaccacctccaccagatctaccacaatgctaaaaatatatagtcaattgtttagattcagaagaatcatatgttttgcaattatagcaaattgtccttgttatgtttttgtcctaaagttaagcagttattagtgtgtgtatttgatatttctcctatgtgtgagccatcagggtttagccttggctttattgagtttgaaattcattgtctatgatatatgtgcaagtacctctcaagaaagagtcattttgacttcatatattatatagtaatcacaatcttagtttatgaaaaaaaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="25555" stop="27022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25854" g_stop="26245" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26246" i_stop="26329" i_length="84">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26330" g_stop="26718" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="781" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="784" polyA_stop="799"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E544536" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25854" e_stop="26245"/>
          <exon e_start="26330" e_stop="26718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTAGTAAAACTTCATTACTGCAGGCCTATTACCAAAAAACTCCAGGGATTTACACATTGGACTTTCCACGCGTTCCACCGGTGCAATTTGATTACACGGGCAATGTTTCACGTGGACTTTGGCAACCAACATTTGGAACTAAGTTGTACAAGCTCAAATTTGGTTCTAATGTACAAATTGTGTTGCAAGATACTGCTATCTTCTCAACAGAGGATCACCCTATACATCTTCACGGTTACCATTTTTGGGTCGTTGGACAAGGTTTTGGTAACTTTAATGCTCAAACTGATACTGCCAACTTTAACTTGAATGATCCACCAGTAAGGAACACAATCGATGTTCCTGTTGGTGGATGGGCAGTCATCCGTTTCGTTGCTGATAATCCAGGTAAAGAACCTGATTTCATCATTAAAAATGTTCAAGTTTTCAAATTTTGTACCTGTTTTGAGAATTGGATTGATTTTTTTGCAGGGGTTTGGTTGTTACACTGCCACATTGATTCTCATTTGGCTTGGGGCCTAGCTATGGCATTCATCGTCGAAAATGGAATAGGAGAGAAACAGACAATGGAACCACCTCCACCAGATCTACCACAATGCTAAAAATATATAGTCAATTGTTTAGATTCAGAAGAATCATATGTTTTGCAATTATAGCAAATTGTCCTTGTTATGTTTTTGTCCTAAAGTTAAGCAGTTATTAGTGTGTGTATTTGATATTTCTCCTATGTGTGAGCCATCAGGGTTTAGCCTTGGCTTTATTGAGTTTGAAATTCATTGTCTATGATATATGTGCAAGTACCTCTCAAGAAAGAGTCATTTTGACTTCATATATTATATAGTAATCACAATCTTAGTTTA</genome_strand>
        <mrna_strand>TTTCCCTAGTAAAACTCCATTACTGCAGGCCTATACCCAAAAAACTCCAGGGATTTACACATTGGACTTTCCACGCGTTCCACCGGTGCAATTTGATTACACGGGCAATGTTTCACGTGGACTTTGGCAACCAACATTTGGAACTAAGTTGTACAAGCTCAAATTTGGTTCTAATGTACAAATTGTGTTGCAAGATACTGCTATCTTCTCAACAGAGGATCACCCTATACATCTTCACGGTTACCATTTTTGGGTCGTTGGACAAGGTTTTGGTAACTTTAATGCTCAAACTGATACTGCCAACTTTAACTTGAATGATCCACCAGTAAGGAACACAATCGATGTTCCTGTTGGTGGATGGGCAGTCATCCGTTTCGTTGCTGATAATCCAG....................................................................................GGGTTTGGTTGTTACACTGCCACATTGATTCTCATTTGGCTTGGGGCCTAGCTATGGCATTCATCGTCGAAAATGGAATAGGAGAGAAACAGACAATGGAACCACCTCCACCAGATCTACCACAATGCTAAAAATATATAGTCAATTGTTTAGATTCAGAAGAATCATATGTTTTGCAATTATAGCAAATTGTCCTTGTTATGTTTTTGTCCTAAAGTTAAGCAGTTATTAGTGTGTGTATTTGATATTTCTCCTATGTGTGAGCCATCAGGGTTTAGCCTTGGCTTTATTGAGTTTGAAATTCATTGTCTATGATATATGTGCAAGTACCTCTCAAGAAAGAGTCATTTTGACTTCATATATTATATAGTAATCACAATCTTAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E460226" ref_strand="+" ref_description="SGN-E460226 [cPRO-30-G12]">
      <seq>cccaattagaccaggaggattttacacatacagatttactattgaaaaccaagagggtacattgtggtggcatgctcacagcaaatggcttagagctactgtttatggtgcattagttattttacctaaacagggttctaattttcctttttcactgccccagaaagattttcctgttattcttggagaatggtggaacagagacattattgcagtacaaagacaagcacaatttactggagcagctcctaataattctgatgcatatactattaatggtcaacctggtgacctctacaaatgctctacacaaggtactgtgaaatacttggtgaatcccggagaatcagttctcctgagggtgatcaacgctgcactcaatcaacaactttttttctcagttgcaaaccacatgctcactgttgtgggtattgatgctacttacaacaagccttttacaactaatgtcattatggttggacctggacaaacaactaatgtaattctcactgctaatcagtcccctcgccgatactatatggcagctcgtgcctatgccacagtcagaaatgggcaatttgataacaccactaccactgccatacttgagtacacaaatgtcaactcgggcgcgaattcaaggcctttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24487" stop="31785"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30641" g_stop="30825" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30826" i_stop="30942" i_length="117">
            <donor d_prob="0.990" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30943" g_stop="31071" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="314" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31072" i_stop="31149" i_length="78">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31150" g_stop="31485" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="650" r_length="336" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E460226" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E460226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30641" e_stop="30825"/>
          <exon e_start="30943" e_stop="31071"/>
          <exon e_start="31150" e_stop="31485"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATTAGACCAGGAGGATTTTACACATACAGATTTACTATTGAAAATCAAGAGGGTACATTGTGGTGGCATGCTCACAGCAAATGGCTTAGAGCTACTGTTTATGGAGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTCCCCTTTTCACTGCCCCAAAAAGATTTTCCTGTTATTCTTGGTAATGCTTCTTTCTCTTTATCTTCTCGATTATACATTGACAGTGAAAAAACACTTTTTGCACTATTTTTATTACACTCCGAATTCGATATGATTATATGTTTTTCATTTTGTATAGGGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAGGTCCTTACTACATAAAACATAAACGATTTAACTCATATACACTACCCGTGAAATGACTAATTCAGAATTGAAATGCAGGTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCGCTCGTGCCTATGCCACAGTTAGAAATGGGCAATTTGATAACACTACTACCACTGCCATACTTGAGTACACAAATGTCAACTCGGGGGCGAATTCAAGGCCTTTAT</genome_strand>
        <mrna_strand>CCCAATTAGACCAGGAGGATTTTACACATACAGATTTACTATTGAAAACCAAGAGGGTACATTGTGGTGGCATGCTCACAGCAAATGGCTTAGAGCTACTGTTTATGGTGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTTCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG.....................................................................................................................GAGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTCTACAAATGCTCTACACAAG..............................................................................GTACTGTGAAATACTTGGTGAATCCCGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTTTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTCACTGCTAATCAGTCCCCTCGCCGATACTATATGGCAGCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACCACTACCACTGCCATACTTGAGTACACAAATGTCAACTCGGGCGCGAATTCAAGGCCTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462359" ref_strand="+" ref_description="SGN-E462359 [cPRO-11-M24]">
      <seq>atggtgcattagttattttacctaaacagggttctaattttcttttttcactgccccagaaagattttcctgttattcttggagaatggtggaacagagacattattgcagtacaaagacaagcacaatttactggagcagctcctaataattctgatgcatatactattaatggtcaacctggtgacctctacaaatgctctacacaaggtactgtgaaatacttggtgaatcccggagaatcagttctcctgagggtgatcaacgctgcactcaatcaacaactttttttctcagttgcaaaccacatgctcactgttgtgggtattgatgctacttacaacaagccttttacaactaatgtcattatggttggacctggacaaacaactaatgtaattctcactgctaatcagtcccctcgccgatactatatggcagctcgtgcctatgccacagtcagaaatgggcaatttgataacaccactaccactgccatacttgagtacacaaatgtcaactcgggcgcgaattcaaggcctttattgcctcaacttcctgccttcaatgatacagccactgccactgccactgctttcgctaaacaattgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="24591" stop="31847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30745" g_stop="30825" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30826" i_stop="30942" i_length="117">
            <donor d_prob="0.990" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30943" g_stop="31071" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="210" r_length="129" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="31072" i_stop="31149" i_length="78">
            <donor d_prob="0.889" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31150" g_stop="31526" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="587" r_length="377" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E462359" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30745" e_stop="30825"/>
          <exon e_start="30943" e_stop="31071"/>
          <exon e_start="31150" e_stop="31526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTCCCCTTTTCACTGCCCCAAAAAGATTTTCCTGTTATTCTTGGTAATGCTTCTTTCTCTTTATCTTCTCGATTATACATTGACAGTGAAAAAACACTTTTTGCACTATTTTTATTACACTCCGAATTCGATATGATTATATGTTTTTCATTTTGTATAGGGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAGGTCCTTACTACATAAAACATAAACGATTTAACTCATATACACTACCCGTGAAATGACTAATTCAGAATTGAAATGCAGGTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCGCTCGTGCCTATGCCACAGTTAGAAATGGGCAATTTGATAACACTACTACCACTGCCATACTTGAGTACACAAATGTCAACTCGGGGGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACT</genome_strand>
        <mrna_strand>ATGGTGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTTCTTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG.....................................................................................................................GAGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTCTACAAATGCTCTACACAAG..............................................................................GTACTGTGAAATACTTGGTGAATCCCGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTTTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTCACTGCTAATCAGTCCCCTCGCCGATACTATATGGCAGCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACCACTACCACTGCCATACTTGAGTACACAAATGTCAACTCGGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACTGCCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E623495" ref_strand="+" ref_description="SGN-E623495 [88588]">
      <seq>ttgaattcattaatcaaccaatcacttccttggaaagtaaagcagtctgctggttggtgtcatcccctttaaaccttttcctccagttagtgctgtccctgtacatgggacaacagagactctcgtgaaacttgcctgacgtatactgatgatgtgcggacattggtatgggtgctgtggaggtcagccttccacttcttaaaaggcatttacaactcgccaaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtggcctattttccacatttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggactaggtgctgcttctagatcagcaatgtttggtggagttttacttgcattgatagagggagctggaatcatgttaaataaagtcatgagtgcgccccaaaatttcccacccatggatgagccactaccaaatgtccctggggtgcctggatatccccctgggcagctgcctggtcaaccaatggggaagcttcctggtcaagctccagtaagtattgatgggtatgatgacagaatcttcagcgccatcctcttcttcctcgacatcctgggtttggaagggcttttggacggtggcaagaaagagggagacggcgttcaagcggtgggtaggcaagacacaggttttagagagctttggatgctcctagccaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34014" stop="32608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="32908" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="795" r_length="795" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E623495" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E623495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="32908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACC-AAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGAT-GGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCT-GGTTTGG-AGGGCTTTTTGGAGGTGGAAAGAAAGA-GGAGACTGCG-CCAAACGGT-GGTA-GCAAGACACAGGTTTTAGAGAGCTTT-GATGCTCCTAACCCACCT</genome_strand>
        <mrna_strand>TTGAATTCATT-AA-TCAACCAATCACTTCCTTGGAAAGT-AAAGCA-GTCTGC-TGGTTGGTGTCATCCCCTTTAAACCTTTT-CCTCC-AGTTAGTGC-TGTCCC-TGT-AC-ATGGG-ACAACAGAGA-CTCTCGTGAAACTTG-CCTGA-CGTATAC-TGATGATG-T-GCGGA-CA-TTGGTATGGGTGCTG-TGGAGG-TCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCGCCAAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTAGGTGCTGCTTCTAGATCAGCAATGTTTGGTGGAGTTTTACTTGCATTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCGCCCCAAAATTTCCCACCCATGGATGAGCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCCCCTGGGCAGCTGCCTGGTCAACCAATGGGGAAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGGTATGATGACAGAATCTTCAGCGCCATCCTCTTCTTCCTCGACATCCTGGGTTTGGAAGGGCTTTTGGACGGTGGCAAGAAAGAGGGAGACGGCGTTCAAGCGGTGGGTAGGCAAGACACAGGTTTTAGAGAGCTTTGGATGCTCCTAGCCAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347201" ref_strand="+" ref_description="SGN-E347201 [cTOF-25-O4]">
      <seq>ttcagccttccacttcttaaaaggcatttacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattgggggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggacttggtgctgcttctagatcagcattgtttggtggagttttacttgcgttgatagagggagctggaatcatgttaaataaagtcatgagtgcaccccagaatttcccacccatggatgacccactaccaaatgtccctggggtgcctggatatccacctgggcagttgcctggtcaaccaatgaggcagcttcctggtcaagctccagtaagtattgatggtatgatgacagaatcttcagcgccagcctctttttcctcgacatccttggtttggagggctttttgggaggtggaaagaaagaggagactgcgccaaacggtggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33811" stop="32652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33511" g_stop="32952" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E347201" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33511" e_stop="32952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCC-TGGTTTGGAGGGCTTTTT-GGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGTA</genome_strand>
        <mrna_strand>TTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTTTTCCTCGACATCCTTGGTTTGGAGGGCTTTTTGGGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730824" ref_strand="+" ref_description="SGN-E730824 [LA25BC07]">
      <seq>ctttttcaacagttcttgttttctctcttactgtatcgcaggtgaattcattaaattaaaccaatcagttccttggaaagtaaaagcacgtctgcttggttggtgtcatcccctttagcccttttccctcctagatagtgcttgtcccctgttacaatgggaacaccggagacctctcgtgaaccatgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattgggggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggacttggtgctgcttctagatcagcattgtttggtggagttttacttgcgttgatagagggagctggaatcatgttaaataaagtcatgagtgcaccccagaatttcccacccatggatgacccactaccaaatgtccctggggtgcctggatatccacctgggcagttgcctggtcaaccaatgaggcagcttcctggtcaagctccagtaagtattgatggtatgatgacagaatcttcagcgccagcctcttcttcctcgacatcctggtttggagggctttttggaggtggaaagaaagaggagactgcgccaaacggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35595" stop="32653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35295" g_stop="35254" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35253" i_stop="33716" i_length="1538">
            <donor d_prob="0.998" d_score="0.95"/>
            <acceptor a_prob="0.632" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33715" g_stop="32953" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="804" r_length="763" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E730824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35295" e_stop="35254"/>
          <exon e_start="33715" e_stop="32953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCAACAAGTTCTTGTTTTCTCTCTTACTGTATCGCAGGTAATTAAAAATCTATGCAACTCTACATTACACTGCTATATATTTATATGTATGATTTCTAGGGTTTCTAGGTGTCTTGGGTTTGTTCATTTTTGGTTTCAAAACTCTTGTACTTGTTCGTGGATACACTTAATTCTTTGTTTATAACGTTGACCTGCTTGGTATTTCGATAGATTGTTGGCTAATTTTTGATGGGTCACTGTTTTCTTGAGATGTTTTTGCTTAATTTTTGATGGATTGTTTTTCTTGAGATGGTTTTGCTTAATTTTTGATTGGTCACTGCTTTTTTTGAGATGTTTTTGCTTTCTGTGTAATTGCTATTGCATTATGTGTTAATCTTCTAATTCTCATGTCCACTGTTATGATTTTGGGAGTTATTGAAGTGTTTGGGGTGGTTTAGCTAGGGTTTAAGCCCTTTTTGATTTTGGGATTTTATGTCAGTGATTATAACTCTTTTTCAATCAGTGTTGTTTTGTGTTAGTGCTCTAATTCCCATTGTTACCGGGCTTACATTTGGTAATATCTGAACTAGCTCGTTTCTATGGTCTACGTGTATGAAATCTGTGATTGGTTTTGTTGAGTCAATGTTGATGTTCTATCTGGTTTGAATTACTGTTGCTTTGTGAAAAATGATTTCTAGTTGTCATTTATGCTCAGTTCTATTTTATGGTATTGTTGAAACTGGGTCATGGTACCTGTACTCTAAGGGGTCATTTGGTATGAGGGATAAGGATTCATTTTATCCCGCATTTGGTTAGGGTATTAATTAGTCCAGGGATTATGTATCCCACCATTTATACTACAATGATGGGATAATAAACCCCATATATACAGTGGAACAACTAAGCCCATGGGATTACTTCTTTTGGATGAAGAAAAGCCCATGAGATAACTTTGTCTGTCCACTGCCCATACCAAACAACTCTAAGTTCCTAGTCTATATAGTTTCTGAATTCTTTGGTAGTTTGGTGAAAGGACACTAGAGAAAGTGGAGTAAAGAGAGAAACAATGATTAGTTAATCTCTTTGAGCAGGGTCACGGTGTGCAAGGTGTTATCACCAAAATGTCATTTGTTTCAAGTTTCAAAGAACGTATTGATTATTATCTTAGTTTATCAACATTTATAGCTTGGCTTCTTTAGTTTGCTCAAATATTTGATGCTGTTAACATATCTGCCCTAAGAGTGATTTGATGCTAAGTTGTCCAGTCCAAATATTATTAAAAAAAACTATAGATTAATCCTTATGGTGAAAAAGCTTTGCTTCCATAAGAAACGGGCAAGTTGTAAGTAGCTGAGAGGAAGTTATTGAACTCCTTCCATGATTAAAAAAATAGTTACTTTATATATAATCTGAGTTCACTTTGATACTTGAGCTGGGTTTTATTCTAAGAGCTGTAGGGAAAAAGTAGTTCTTTGTTTTCAGTGTTGAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCTGGTTTGGAGGGCTTTTTGGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGT</genome_strand>
        <mrna_strand>CTTTTTCAAC-AGTTCTTGTTTTCTCTCTTACTGTATCGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCTGGTTTGGAGGGCTTTTTGGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E444386" ref_strand="+" ref_description="SGN-E444386 [cSTA-42-B22]">
      <seq>cttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactaggtgctgcttctagatcagcactgtttggtggagttttacttgcgttgatagagggagctggaattatgttaaataaagtcatgagtgctccccagaacttcccatccatggaggagccactaccaaatgtccctggagtgcctggatatccacctgggcagctgcctggtcaaccaacggggcagcttcctggtcaagctccagtaagtattgatggtatgagggcagaatcatcagcaccatcctcttcttcctggtttggaggactttttggtggtggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33760" stop="32716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33460" g_stop="32980" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E444386" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.019" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E444386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33460" e_stop="32980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCTGGTTTGGAGGGCTTTTTGGAGGTGGAAAG</genome_strand>
        <mrna_strand>CTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTAGGTGCTGCTTCTAGATCAGCACTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATTATGTTAAATAAAGTCATGAGTGCTCCCCAGAACTTCCCATCCATGGAGGAGCCACTACCAAATGTCCCTGGAGTGCCTGGATATCCACCTGGGCAGCTGCCTGGTCAACCAACGGGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGAGGGCAGAATCATCAGCACCA---TCCTCTT-CT-----TCCTGGTTTGGAGGACTTTTTGGTGGTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E409512" ref_strand="+" ref_description="SGN-E409512 [PPI-14-C24]">
      <seq>cctggagtcggtcggtcggtgccactgcctctccgtcaaggtcaatttatcaaatcaaaccaatcacttccttggaaagtaaaagcaggcctgctttgttggtgtcatacctttaacctttttcttcctagtcagtgcttgtcccctgtaacaatgggaacaccagagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatatacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactangtgctgcttctagatcagcactgntttggtggagttttacttgcattgatagaaggagctggaattatgttaaataaagtcatgagtgctccccagaacttcccacccatggaggagccactaccaaatgtccctggagtgcctggatatccacctgggcagctgcctggtcaaccaacggggcagcttcctggtcagctccagtaagtattgatggtatgatggcagaatcatcagcaccatcctcttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34017" stop="32720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33020" g_length="696"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="734" r_length="694" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E409512" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E409512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTG-TTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTC</genome_strand>
        <mrna_strand>GTCAATTTATCAAATCAAACCAATCACTTCCTTGGAAAGTAAAAGCAGGCCTGCTTTGTTGGTGTCAT-ACCTTTA-ACCTTTTTCTTCCTAGTCAGTGCTTGTCCCCTGTAACAATGGGAACACCAGAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATATACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTANGTGCTGCTTCTAGATCAGCACTGNTTTGGTGGAGTTTTACTTGCATTGATAGAAGGAGCTGGAATTATGTTAAATAAAGTCATGAGTGCTCCCCAGAACTTCCCACCCATGGAGGAGCCACTACCAAATGTCCCTGGAGTGCCTGGATATCCACCTGGGCAGCTGCCTGGTCAACCAACGGGGCAGCTTCCTGGTC-AGCTCCAGTAAGTATTGATGGTATGATGGCAGAATCATCAGCACCATCCTCTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E586067" ref_strand="+" ref_description="SGN-E586067 [73492]">
      <seq>gtcggtcggtcggtgccactgcctctccgtcaaggtcaatttatcaaatcaaaccaatcacttccttggaaagtaaaagcaggcctgctttgttggtgtcatacctttaacctttttcttcctagtcagtgcttgtcccctgtaacaatgggaacaccagagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggtgcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggtatatacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactnagtgctgcttctagatcagcactgtttggtggagttttacttgcgttgatagagggagctggaattatgttaaataaagtcatgagtgctccccagaacttcccacacatggaggagccactaccaaaatgtccctggagtgcctggatatccacctgggcagctgcctggtcaaccaaacggggcagccttcctggtacaagctccagtaagtattgatggtatgatggcagaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34017" stop="32741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33040" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="712" r_length="678" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E586067" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E586067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACC-AAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACC-AATGAGGCAG-CTTCCTGGT-CAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCT</genome_strand>
        <mrna_strand>GTCAATTTATCAAATCAAACCAATCACTTCCTTGGAAAGTAAAAGCAGGCCTGCTTTGTTGGTGTCAT-ACCTTTAACCTTTTTCT-TCCTAGTCAGTGCTTGTCCCCTGTAACAATGGGAACACCAGAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGTGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGTATATACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTNAGTGCTGCTTCTAGATCAGCACTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATTATGTTAAATAAAGTCATGAGTGCTCCCCAGAACTTCCCACACATGGAGGAGCCACTACCAAAATGTCCCTGGAGTGCCTGGATATCCACCTGGGCAGCTGCCTGGTCAACCAAACGGGGCAGCCTTCCTGGTACAAGCTCCAGTAAGTATTGATGGTATGATGGCAGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728299" ref_strand="+" ref_description="SGN-E728299 [LA17BE01]">
      <seq>ctctcttactgtatcgcaggtgaattcattaaattaaaccaatcagttccttggaaagtaaaagcacgtctgcttggttggtgtcatcccctttagcccttttccctcctagatagtgcttgtcccctgttacaatgggaacaccggagacctctcgtgaaccatgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattgggggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggacttggtgctgcttctagatcagcattgtttggtggagttttacttgcgttgatagagggagctggaatcatgttaaataaagtcatgagtgcaccccagaatttcccacccatggatgacccactaccaaatgtcccctgggtgcctggatatccacctgggcagttgcctggtcaaccaatgaggcagcttcctggtncagctccagtaagtattgatggtatgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34029" stop="32749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33049" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="686" r_length="667" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E728299" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728299" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33049"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATG</genome_strand>
        <mrna_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCCTGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTNCAGCTCCAGTAAGTATTGATGGTATGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285247" ref_strand="+" ref_description="SGN-E285247 [cLER-20-J16]">
      <seq>ttctctcttactgtatcgcaggtgaattcattaaattaaaccaatcagttccttggaaagtaaaagcacgtctgcttggttggtgtcatcccctttagcccttttccctcctagatagtgcttgtcccctgttacaatgggaacaccggagacctctcgtgaaccatgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattgggggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggacttggtgctgcttctagatcagcattgtttggtggagttttacttgcgttgatagagggagctggaatcatgttaaataaagtcatgagtgcaccccagaatttcccacccatggatgacccactaccaaatgtccctggggtgcctggatatccacctgggcagttgcctggtcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34029" stop="32799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33099" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="638" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E285247" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33099"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAAC</genome_strand>
        <mrna_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E453217" ref_strand="+" ref_description="SGN-E453217 [cSTS-19-C18]">
      <seq>aatttatcaaatcaaaccaatcacttccttggaaagtaaaagcaggcctgctttgttggtgtcatacctttaacctttttcttcctagtcagtgcttgtcccctgtaacaatgggaacaccagagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatatacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactangtgctgcttctagatcagcactgtttggtggagttttacttgcattgatagagggagctggaattatgttaaataaagtcatgagtgctccccagaacttcccacccatggaggagccactaccaaatgtccctggagtgcctggatatccacctgggcagctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34012" stop="32808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33712" g_stop="33108" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E453217" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E453217" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33712" e_stop="33108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGC</genome_strand>
        <mrna_strand>AATTTATCAAATCAAACCAATCACTTCCTTGGAAAGTAAAAGCAGGCCTGCTTTGTTGGTGTCAT-ACCTTTAACCTTTTT-CTTCCTAGTCAGTGCTTGTCCCCTGTAACAATGGGAACACCAGAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATATACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTANGTGCTGCTTCTAGATCAGCACTGTTTGGTGGAGTTTTACTTGCATTGATAGAGGGAGCTGGAATTATGTTAAATAAAGTCATGAGTGCTCCCCAGAACTTCCCACCCATGGAGGAGCCACTACCAAATGTCCCTGGAGTGCCTGGATATCCACCTGGGCAGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290442" ref_strand="+" ref_description="SGN-E290442 [cLES-20-D8]">
      <seq>tcacctggagtcggtaggtcggtgccactgcctctccgtcaggtcaatatcaaatcaaaccgatcactttcttggaaatttaaagcagccctgctttgttggtgtcatacctctaaaccttttccttcctagtcagtgcttatcccttgtaacaatgggaacaccagagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggcatgggtgctgttggaggttcagccttccacttcttaaaaggcatatacaactcaccaaaaggtgagcgcttgattggcggttcacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactgggtgctgcttctagatcagcactgtttggtggagttttacttgcgttgatagagggagctggaattatgttaaataaagtcatgagtgctccacagaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33945" stop="32876"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33175" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="580" r_length="538" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E290442" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAAT</genome_strand>
        <mrna_strand>GTCAA-T-ATCAAATCAAACCGATCACTTTCTTGGAAATTTAAAGCAGCCCTGCTTTGTTGGTGTCAT-ACCTCTAAACCTTTTCCTTCCTAGTCAGTGCTTATCCCTTGTAACAATGGGAACACCAGAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGCATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATATACAACTCACCAAAAGGTGAGCGCTTGATTGGCGGTTCACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTGGGTGCTGCTTCTAGATCAGCACTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATTATGTTAAATAAAGTCATGAGTGCTCCACAGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448652" ref_strand="+" ref_description="SGN-E448652 [cSTS-3-H8]">
      <seq>tcttcttaacaagttcttattttctctcctgtatcccatgtgaattcattaaatcaaaccaatcacttccttggaaagaaaagcaagtctgcttggttggtgtcatccccttttaaccctttttcctcccagttagtgcttgtcccctgttacaatgggaacaccagagacctctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcgccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtggcctattttccacatttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggactacgtgctgcttctagatcagcaatgtttggtggagtgntacttgcattgatagnaggagctggaatcatgttaaataaagtcatgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34018" stop="32886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33186" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="569" r_length="530" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E448652" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E448652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCC-TTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTG</genome_strand>
        <mrna_strand>GTGAATTCATTAAATCAAACCAATCACTTCCTTGGAAAG-AAAAGCAAGTCTGCTTGGTTGGTGTCATCCCCTTTTAACCCTTTTTCCTCCCAGTTAGTGCTTGTCCCCTGTTACAATGGGAACACCAGAGACCTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCGCCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTACGTGCTGCTTCTAGATCAGCAATGTTTGGTGGAGTGNTACTTGCATTGATAGNAGGAGCTGGAATCATGTTAAATAAAGTCATGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E564431" ref_strand="+" ref_description="SGN-E564431 [2680]">
      <seq>caagttcttgttttctctcctgttcccatgtgaattcattaaattaaaccaatcacttccttggaaagtaaaagcaagtctgcttggttggtgtcatccccttttagccctttttcctcctagttagtgcttgtcccctgttacaatgggaacaccagagacctctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcgccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcaggggactangtgcttgcttctagatcagcaatgtttggtggagttttacttgcgttgataagaaggagctggaatcatgttaaataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="35586" stop="32895"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35286" g_stop="35254" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.818"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35253" i_stop="33716" i_length="1538">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.632" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33715" g_stop="33195" g_length="521"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="554" r_length="525" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E564431" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E564431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35286" e_stop="35254"/>
          <exon e_start="33715" e_stop="33195"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCTTGTTTTCTCTCTTACTGTATCGCAGGTAATTAAAAATCTATGCAACTCTACATTACACTGCTATATATTTATATGTATGATTTCTAGGGTTTCTAGGTGTCTTGGGTTTGTTCATTTTTGGTTTCAAAACTCTTGTACTTGTTCGTGGATACACTTAATTCTTTGTTTATAACGTTGACCTGCTTGGTATTTCGATAGATTGTTGGCTAATTTTTGATGGGTCACTGTTTTCTTGAGATGTTTTTGCTTAATTTTTGATGGATTGTTTTTCTTGAGATGGTTTTGCTTAATTTTTGATTGGTCACTGCTTTTTTTGAGATGTTTTTGCTTTCTGTGTAATTGCTATTGCATTATGTGTTAATCTTCTAATTCTCATGTCCACTGTTATGATTTTGGGAGTTATTGAAGTGTTTGGGGTGGTTTAGCTAGGGTTTAAGCCCTTTTTGATTTTGGGATTTTATGTCAGTGATTATAACTCTTTTTCAATCAGTGTTGTTTTGTGTTAGTGCTCTAATTCCCATTGTTACCGGGCTTACATTTGGTAATATCTGAACTAGCTCGTTTCTATGGTCTACGTGTATGAAATCTGTGATTGGTTTTGTTGAGTCAATGTTGATGTTCTATCTGGTTTGAATTACTGTTGCTTTGTGAAAAATGATTTCTAGTTGTCATTTATGCTCAGTTCTATTTTATGGTATTGTTGAAACTGGGTCATGGTACCTGTACTCTAAGGGGTCATTTGGTATGAGGGATAAGGATTCATTTTATCCCGCATTTGGTTAGGGTATTAATTAGTCCAGGGATTATGTATCCCACCATTTATACTACAATGATGGGATAATAAACCCCATATATACAGTGGAACAACTAAGCCCATGGGATTACTTCTTTTGGATGAAGAAAAGCCCATGAGATAACTTTGTCTGTCCACTGCCCATACCAAACAACTCTAAGTTCCTAGTCTATATAGTTTCTGAATTCTTTGGTAGTTTGGTGAAAGGACACTAGAGAAAGTGGAGTAAAGAGAGAAACAATGATTAGTTAATCTCTTTGAGCAGGGTCACGGTGTGCAAGGTGTTATCACCAAAATGTCATTTGTTTCAAGTTTCAAAGAACGTATTGATTATTATCTTAGTTTATCAACATTTATAGCTTGGCTTCTTTAGTTTGCTCAAATATTTGATGCTGTTAACATATCTGCCCTAAGAGTGATTTGATGCTAAGTTGTCCAGTCCAAATATTATTAAAAAAAACTATAGATTAATCCTTATGGTGAAAAAGCTTTGCTTCCATAAGAAACGGGCAAGTTGTAAGTAGCTGAGAGGAAGTTATTGAACTCCTTCCATGATTAAAAAAATAGTTACTTTATATATAATCTGAGTTCACTTTGATACTTGAGCTGGGTTTTATTCTAAGAGCTGTAGGGAAAAAGTAGTTCTTTGTTTTCAGTGTTGAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCC-TTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCA-GGGACTTGGTGC-TGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGAT-AGAGGGAGCTGGAATCATGTTAAATAAAG</genome_strand>
        <mrna_strand>CAAGTTCTTGTTTTCTCTC---CTGT-TCCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATTCATTAAATTAAACCAATCACTTCCTTGGAAAGTAAAAGCAAGTCTGCTTGGTTGGTGTCATCCCCTTTTAGCCCTTTTTCCTCCTAGTTAGTGCTTGTCCCCTGTTACAATGGGAACACCAGAGACCTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCGCCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGGACTANGTGCTTGCTTCTAGATCAGCAATGTTTGGTGGAGTTTTACTTGCGTTGATAAGAAGGAGCTGGAATCATGTTAAATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E723027" ref_strand="+" ref_description="SGN-E723027 [FC19AE05]">
      <seq>gtcggtgccactgcctctccgtcaggccaatatcaaatcaaaccgatcagtttcttggaaatttaaagcacccctgctttgttggtgtcatacctctaaaccttttccttcctagtcagtgcttatcccttgtaacaatgggaacaccaaagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggcatgggtgctgttggaggttcagccttccacttcttaaaaggcatatacaactcaccaaaaggtgagcgcttgattggcggttcataggcagtgcgcatgaatgctcctcgaattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggtaaaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacaaatgcggcagggactgggtgctgcttctaaatcaacactgtttggtggagttttacttgcgttgataaaaggagctggaattatgttaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33945" stop="32898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33198" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="540" r_length="515" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E723027" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATA</genome_strand>
        <mrna_strand>GCCAA-T-ATCAAATCAAACCGATCAGTTTCTTGGAAATTTAAAGCACCCCTGCTTTGTTGGTGTCAT-ACCTCTAAACCTTTTCCTTCCTAGTCAGTGCTTATCCCTTGTAACAATGGGAACACCAAAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGCATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATATACAACTCACCAAAAGGTGAGCGCTTGATTGGCGGTTCATAGGCAGTGCGCATGAATGCTCCTCGAATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGTAAAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAAATGCGGCAGGGACTGGGTGCTGCTTCTAAATCAACACTGTTTGGTGGAGTTTTACTTGCGTTGATAAAAGGAGCTGGAATTATGTTAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E373760" ref_strand="+" ref_description="SGN-E373760 [TUS-31-E22]">
      <seq>tcacctggagtcggtaggtcggtgccactgcctctccgtcaggtcaatatcaaatcaaaccgatcactttcttggaaatttaaagcagccctgctttgttggtgtcatacctctaaaccttttccttcctagtcagtgcttatcccttgtaacaatgggaacaccagagacttctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggcatgggtgctgttggaggttcagccttccacttcttaaaaggcatatacaactcaccaaaaggtgagcgcttgattggcggttcacaggcagtgcgcatgaatgctcctcgtattggtggtagttttgctgtgtggggtgggcttttctcctcatttgattgtacaatggtttatctccggcagaaagaagatccttggaactctattattgctggtgcagcaactggtggctttctacagatgcggcagggactgggtgctgcttctagatcagcactgtttggtggagttttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33945" stop="32933"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33715" g_stop="33233" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="522" r_length="480" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E373760" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33715" e_stop="33233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACT</genome_strand>
        <mrna_strand>GTCAA-T-ATCAAATCAAACCGATCACTTTCTTGGAAATTTAAAGCAGCCCTGCTTTGTTGGTGTCAT-ACCTCTAAACCTTTTCCTTCCTAGTCAGTGCTTATCCCTTGTAACAATGGGAACACCAGAGACTTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGCATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATATACAACTCACCAAAAGGTGAGCGCTTGATTGGCGGTTCACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGTAGTTTTGCTGTGTGGGGTGGGCTTTTCTCCTCATTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCTATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTGGGTGCTGCTTCTAGATCAGCACTGTTTGGTGGAGTTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260005" ref_strand="+" ref_description="SGN-E260005 [cLEG-51-N14]">
      <seq>gaatgcaaagtttgtgttcatgttagtggctttgctgttttcaatgttaattgtgattttcactttacagccccttgatggtacagttagatgagactgttttgatgcaggtgaattcattaaattaaaccaatcagttccttggaaagtaaaagcacgtctgcttggttggtgtcatcccctttagcccttttccctcctagatagtgcttgtcccctgttacaatgggaacaccggagacctctcgtgaaccatgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttaaaaggcatttacaactcaccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattgggggtagttttgctgtgtggggtggcctattttccacctttgattgtacaatggtttatctccggcagaaagaagatccttggaactcaattattgctggtgcagcaactggtggctttctacagatgcggcagggacttggtgctgcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34125" stop="32962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33825" g_stop="33262" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E260005" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33825" e_stop="33262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCT</genome_strand>
        <mrna_strand>GAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E580805" ref_strand="+" ref_description="SGN-E580805 [6048]">
      <seq>ctgcttggttggtgtcatccccttttagccctttttcctcctagttagtgcttgtcccctgttacaatgggaacaccagagacctctcgtgaaccttgccctgaccgtatacttgatgatgttggcggagcatttggtatgggtgctgttggaggttcagccttccacttcttanaaggcatttacaactcgccaaaaggtgagcgcttgattggtggtacacaggcagtgcgcatgaatgctcctcgtattggtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="33965" stop="33109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33665" g_stop="33409" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E580805" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E580805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33665" e_stop="33409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTTGGTTGGTGTCATCCCC-TTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGT</genome_strand>
        <mrna_strand>CTGCTTGGTTGGTGTCATCCCCTTTTAGCCCTTTTTCCTCCTAGTTAGTGCTTGTCCCCTGTTACAATGGGAACACCAGAGACCTCTCGTGAACCTTGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTANAAGGCATTTACAACTCGCCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324356" ref_strand="+" ref_description="SGN-E324356 [cTOC-6-M9]">
      <seq>agaaccaatgattagttaatctctttgagcagggtcacggtgtgcaaggtgttatcaccaaaatgtcatttgtttcaagtttcaaagaacgtattgattattatcttagtttatcaacatttatagcttggcttctttagtttgctcaaatatttgatgctgttaacatatctgccctaagagtgatttgatgctaagttgtccagtccaaatattattaaaaaaaactatagattaatccttatggtgaaaaagctttgcttccataagaaacgggcaagttgtaagtagctgagaggaagttattgaactccttccatgattaaaaaaatagttactttatatataatctgagttcactttgatacttgagctgggttttattctaagagctgtagggaaaaagtagttctttgttttcagtgttgaatgcaaagtttgtgttcatgttagtggctttgctgttttcaatgttaattgtgattttcactttacagccccttgatggtacagttagatgagactgttttgatgcaggtgaattcattaaattaaaccaatcagttccttggaaagtaaaagcacgtctgcttggttggtgtcatcccctttagcccttttccctcctagatagtgcttgtcccctgttacaatgggaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="34552" stop="33291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34252" g_stop="33591" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E324356" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34252" e_stop="33591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAATGATTAGTTAATCTCTTTGAGCAGGGTCACGGTGTGCAAGGTGTTATCACCAAAATGTCATTTGTTTCAAGTTTCAAAGAACGTATTGATTATTATCTTAGTTTATCAACATTTATAGCTTGGCTTCTTTAGTTTGCTCAAATATTTGATGCTGTTAACATATCTGCCCTAAGAGTGATTTGATGCTAAGTTGTCCAGTCCAAATATTATTAAAAAAAACTATAGATTAATCCTTATGGTGAAAAAGCTTTGCTTCCATAAGAAACGGGCAAGTTGTAAGTAGCTGAGAGGAAGTTATTGAACTCCTTCCATGATTAAAAAAATAGTTACTTTATATATAATCTGAGTTCACTTTGATACTTGAGCTGGGTTTTATTCTAAGAGCTGTAGGGAAAAAGTAGTTCTTTGTTTTCAGTGTTGAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACAC</genome_strand>
        <mrna_strand>AGAACCAATGATTAGTTAATCTCTTTGAGCAGGGTCACGGTGTGCAAGGTGTTATCACCAAAATGTCATTTGTTTCAAGTTTCAAAGAACGTATTGATTATTATCTTAGTTTATCAACATTTATAGCTTGGCTTCTTTAGTTTGCTCAAATATTTGATGCTGTTAACATATCTGCCCTAAGAGTGATTTGATGCTAAGTTGTCCAGTCCAAATATTATTAAAAAAAACTATAGATTAATCCTTATGGTGAAAAAGCTTTGCTTCCATAAGAAACGGGCAAGTTGTAAGTAGCTGAGAGGAAGTTATTGAACTCCTTCCATGATTAAAAAAATAGTTACTTTATATATAATCTGAGTTCACTTTGATACTTGAGCTGGGTTTTATTCTAAGAGCTGTAGGGAAAAAGTAGTTCTTTGTTTTCAGTGTTGAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346125" ref_strand="+" ref_description="SGN-E346125 [cTOF-34-K7]">
      <seq>ccgggtcgcagaattgtagcagttggagatttgcatggagatcttgataaggcaagatgtgcacttgagacggctggtgtgctgagttctgatggtcaaagtttgtggattggtggtgagacggttttggttcagctcggagatatacttgatagaggtgaagacgaacttgcaattttatctttgttgaagtcattagatatccaggcaaaagcccatggtggggcagttttccaggtcaatggaaatcatgaaactatgaatgtcgaaggagactacagatatgttgataacggggcacttgacgagtgtatagactttttggaatacttggataaatgtgaacgcaactgggaagaggcttttgtcagttggtgtgctgtgtctgccagatggaaacaggaccggaaggtgtctcaaaattattgggctcaatggaatttggtgaagcggcaaaagggtgtaattgcaagatcaatcctgatgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="36630" stop="39213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36930" g_stop="36951" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36952" i_stop="37745" i_length="794">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37746" g_stop="37846" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="123" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37847" i_stop="37967" i_length="121">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37968" g_stop="38081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="237" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38082" i_stop="38271" i_length="190">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38272" g_stop="38484" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="450" r_length="213" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="38485" i_stop="38875" i_length="391">
            <donor d_prob="0.655" d_score="0.98"/>
            <acceptor a_prob="0.739" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38876" g_stop="38913" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="488" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E346125" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346125" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36930" e_stop="36951"/>
          <exon e_start="37746" e_stop="37846"/>
          <exon e_start="37968" e_stop="38081"/>
          <exon e_start="38272" e_stop="38484"/>
          <exon e_start="38876" e_stop="38913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGGTCGCAGAATTGTAGCAGGTTCGTTTCACTTTTGCTTTCTGGGTTTTCAAGAGTATTATCTGGGTAGAATGCATGTTTTAATATTTAGAAATAGTTCCAATTGGGAATTGTGGGTTGTTGCAAAAATTGAACCACATGAGCTACCTAATTAAGGTGGAGAAGAAAACGTCGATGTCACGATCGAAATAAATTAATTTATATGGTGATAGTTTTAGCTTTTAACCTTAGGAAGCATTAATTTATTTTAATTTTACAAGATGGAATTGTTTTTCTACCTGGAGTGCTACGAGGCAGAATTTTTTAATAAAAGAGAGAGGGTAGAGTACACACATCATTAGAAATTACTCGAGCTGTAATTCGCTGTAAGCTCACACTCTCAAGTCTCAATTGTTCTATGAAACTAAAAAAAATTGGAATAGTTTAGGTGTGTTTTTGACGACGCGTACGTAAATGAAGCCAAAAAATAGACATAACATGCTAGAACTTTTGTTGGAGAAATTTGGAGAATTTCTTTGTCAATTGTATCATAGCAATTTTTTTTTTTAAGCTCATGAATTTGACAGGTAGGTTTATTGATTACATATAGTATCTCCTAACTAACTAAACCATGCCTCAGTCCTAAACGAGTTGTGTGTGCGCGTGAGAGAGAGATAGGAGTGAAATGATGAATTGAAAATACACAATTGAATAGGGGAGAAAAAAAGATAGGATTTCCTACTCATGTAGAGAAAGTTAGGCTACTCAGGTTATGATTGGGGAGTGCTCTTCTCCCTAACCTTTTGCATATTTGATTGCTCTGATTTTTGTGTTAGTTGGAGATTTGCATGGAGATCTTGATAAGGCAAGATGTGCACTTGAGACGGCTGGTGTGCTGAGTTCTGATGGTCAAAGTTTGTGGATTGGTGGTGAGACGGTGAGCTTTTAAATTTGCGATCACATTCTAGCTTGAAGGTTATAAATGGCATTTTACAGTAGTTGAGATTTATCAACTCATTGATTTGTGTATAGATACATTACATTGTTCTCTTCACCAGGTTTTGGTTCAGCTCGGAGATATACTTGATAGAGGTGAAGACGAACTTGCAATTTTATCTTTGTTGAAGTCATTAGATATCCAGGCAAAAGCCCATGGTGGGGCAGTTTTCCAGGTTTGTGAGCCATATTCTACAAGTATCTTGGCAATATGCTGACAACTAATCTCTGTTATCTTTATTGTTACAGCTGGGTAAATGTAGCTTTTATACTGTGCAATTTAACGGATATTTTGGAGACTTGAATGATGATTTGCTGTTAACCTTATGTGTGCTTCATGTCATGAATGATTATTATTTATCATAGGTCAATGGAAATCATGAAACTATGAATGTCGAAGGAGACTACAGATATGTTGATAACGGGGCACTTGACGAGTGTATAGACTTTTTGGAATACTTGGATAAATGTGAACGCAACTGGGAAGAGGCTTTTGTCAGTTGGTGTGCTGTGTCTGCCAGATGGAAACAGGACCGGAAGGTGTCTCAAAATTATTGGGCTCAGTGGAATTTGGTGAAGGTGTGTTCCTTTCAAATCTAGTCTTCATCTCATTTGCTGATGGGTGGTTTCGGAGTTACTTTGAATGGCTGGACAAACAAATATATTGGCATAAGAAGAATTTTAGTGTTGATTTATAAAAAAAAACATTTTACTATAGGTAAACAACAAATTACCTTGTTACCAAGGCATAACCATTTACACAATTACTGAATTTAGCGAGCAGTCCAATTGCGATCAGTGGGTTGACCAAAGAAAGCCTTTAAAGTGATAACTGTATAATTCTTAAGCAGATACTTGAGATAGTTTCCTTTTTTAACTTGCCACTCTTAAGAATCATTGGCTGTTTTTTCCATGTGCTTTGGTGTTTGATATTTTCTATGCTTATTAAGTCGTCCAAATATTAGGACAGCGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAG</genome_strand>
        <mrna_strand>CCGGGTCGCAGAATTGTAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGATTTGCATGGAGATCTTGATAAGGCAAGATGTGCACTTGAGACGGCTGGTGTGCTGAGTTCTGATGGTCAAAGTTTGTGGATTGGTGGTGAGACG.........................................................................................................................GTTTTGGTTCAGCTCGGAGATATACTTGATAGAGGTGAAGACGAACTTGCAATTTTATCTTTGTTGAAGTCATTAGATATCCAGGCAAAAGCCCATGGTGGGGCAGTTTTCCAG..............................................................................................................................................................................................GTCAATGGAAATCATGAAACTATGAATGTCGAAGGAGACTACAGATATGTTGATAACGGGGCACTTGACGAGTGTATAGACTTTTTGGAATACTTGGATAAATGTGAACGCAACTGGGAAGAGGCTTTTGTCAGTTGGTGTGCTGTGTCTGCCAGATGGAAACAGGACCGGAAGGTGTCTCAAAATTATTGGGCTCAATGGAATTTGGTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E591535" ref_strand="+" ref_description="SGN-E591535 [45250]">
      <seq>cttgagacggctggtgtgctgagttctgatggtcaaagtttgtggattggtggtgagacggttttggttcagctcggagatatacttgatcgaggtgaagacgaacttgcaattttatctttgttgaagtcattagatatccaggcaaaagcccatggtggggcagttttccaggtcaatggaaatcatgaaactatgaatgtcgaaggagactacagatatgttgataatggggcacttgacgagtgtatagactttctggaatacttggataaatgtgaacgcaactgggaagaggcttttgtcagttggtgtgctgtgtctgccagatggaaacaggatcggaaggtgtctcaaaattattgggctcagtggaatttggtgaagcggcaaaagggtgtaattgcaagatcaatcctgatgagacccgggggtccattggcatgtgagttggcacgacatggtgtagttcttaaggttgatgattggcttttctgtcatggtggccttcttcctcatcatgttgcctatggcttagagaggctgaatagagaagtttctcgatggatgaaaggtccgagtgaagaagacgattctccacagatctctttcatagccaccaggggctatgacagtattgtgtggaaccgtttggtctccagagatggccggagctggaaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="37487" stop="39562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37787" g_stop="37846" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37847" i_stop="37967" i_length="121">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37968" g_stop="38081" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="174" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38082" i_stop="38271" i_length="190">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38272" g_stop="38484" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="387" r_length="213" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38485" i_stop="38875" i_length="391">
            <donor d_prob="0.655" d_score="0.98"/>
            <acceptor a_prob="0.739" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38876" g_stop="39011" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="523" r_length="136" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39012" i_stop="39098" i_length="87">
            <donor d_prob="0.953" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39099" g_stop="39262" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="686" r_length="163" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E591535" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E591535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37787" e_stop="37846"/>
          <exon e_start="37968" e_stop="38081"/>
          <exon e_start="38272" e_stop="38484"/>
          <exon e_start="38876" e_stop="39011"/>
          <exon e_start="39099" e_stop="39262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGACGGCTGGTGTGCTGAGTTCTGATGGTCAAAGTTTGTGGATTGGTGGTGAGACGGTGAGCTTTTAAATTTGCGATCACATTCTAGCTTGAAGGTTATAAATGGCATTTTACAGTAGTTGAGATTTATCAACTCATTGATTTGTGTATAGATACATTACATTGTTCTCTTCACCAGGTTTTGGTTCAGCTCGGAGATATACTTGATAGAGGTGAAGACGAACTTGCAATTTTATCTTTGTTGAAGTCATTAGATATCCAGGCAAAAGCCCATGGTGGGGCAGTTTTCCAGGTTTGTGAGCCATATTCTACAAGTATCTTGGCAATATGCTGACAACTAATCTCTGTTATCTTTATTGTTACAGCTGGGTAAATGTAGCTTTTATACTGTGCAATTTAACGGATATTTTGGAGACTTGAATGATGATTTGCTGTTAACCTTATGTGTGCTTCATGTCATGAATGATTATTATTTATCATAGGTCAATGGAAATCATGAAACTATGAATGTCGAAGGAGACTACAGATATGTTGATAACGGGGCACTTGACGAGTGTATAGACTTTTTGGAATACTTGGATAAATGTGAACGCAACTGGGAAGAGGCTTTTGTCAGTTGGTGTGCTGTGTCTGCCAGATGGAAACAGGACCGGAAGGTGTCTCAAAATTATTGGGCTCAGTGGAATTTGGTGAAGGTGTGTTCCTTTCAAATCTAGTCTTCATCTCATTTGCTGATGGGTGGTTTCGGAGTTACTTTGAATGGCTGGACAAACAAATATATTGGCATAAGAAGAATTTTAGTGTTGATTTATAAAAAAAAACATTTTACTATAGGTAAACAACAAATTACCTTGTTACCAAGGCATAACCATTTACACAATTACTGAATTTAGCGAGCAGTCCAATTGCGATCAGTGGGTTGACCAAAGAAAGCCTTTAAAGTGATAACTGTATAATTCTTAAGCAGATACTTGAGATAGTTTCCTTTTTTAACTTGCCACTCTTAAGAATCATTGGCTGTTTTTTCCATGTGCTTTGGTGTTTGATATTTTCTATGCTTATTAAGTCGTCCAAATATTAGGACAGCGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCTGGGGGTCCATTGGCATGTGAGTTGGCACGACACGGTGTAGTTCTTAAGGTTGAGGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATGGTAATTAGCTAATCAGCTGCCCGGTTTTCTGGTTTTCTAGGATACATGTAAAATGATTTTCTAATATGATTATTAATGTTATTGCAGTTGCCTATGGCTTAGAAAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCCCTTTTATAGCCACCAGGGGCTATGACAGTGTTGTGTGGAACCGTTTGTACTCCAGAGATGGCGTGGAGCTGGAAAACTAC</genome_strand>
        <mrna_strand>CTTGAGACGGCTGGTGTGCTGAGTTCTGATGGTCAAAGTTTGTGGATTGGTGGTGAGACG.........................................................................................................................GTTTTGGTTCAGCTCGGAGATATACTTGATCGAGGTGAAGACGAACTTGCAATTTTATCTTTGTTGAAGTCATTAGATATCCAGGCAAAAGCCCATGGTGGGGCAGTTTTCCAG..............................................................................................................................................................................................GTCAATGGAAATCATGAAACTATGAATGTCGAAGGAGACTACAGATATGTTGATAATGGGGCACTTGACGAGTGTATAGACTTTCTGGAATACTTGGATAAATGTGAACGCAACTGGGAAGAGGCTTTTGTCAGTTGGTGTGCTGTGTCTGCCAGATGGAAACAGGATCGGAAGGTGTCTCAAAATTATTGGGCTCAGTGGAATTTGGTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................CGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCCGGGGGTCCATTGGCATGTGAGTTGGCACGACATGGTGTAGTTCTTAAGGTTGATGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATG.......................................................................................TTGCCTATGGCTTAGAGAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCTCTTTCATAGCCACCAGGGGCTATGACAGTATTGTGTGGAACCGTTTGGTCTCCAGAGATGGC-CGGAGCTGGAAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E733068" ref_strand="+" ref_description="SGN-E733068 [LB03DE11]">
      <seq>cggtggaatttggtgaagcggcaaaagggtgtaattgcaagatcaatcctgatgagacctgggggtccattggcatgtgagttggcacgacacggtgtagttcttaaggttgaggattggcttttctgtcatggtggccttcttcctcatcatgttgcctatggcttagaaaggctgaatagagaagtttctcgatggatgaaaggtccgagtgaagaagacgattctccacagatcccttttatagccaccaggggctatgacagtgttgtgtggaaccgtttgtactccagagatggcgtggagctggaaaactaccagcttgagcaggtacaatatcttcttgaagagacactacaaagtgtgggcgccaaagctatggttgtaggacatactcctcaaccgatgggagtaaattgtaaatacaactgtagcatatggcgaattgacgtaggaatgtccagaggagtacttgactcaagccctgaggtactagaaataagagataataaagctagggccataaggagcaccagggattggtccagtgaacttcaggtcgctgattacacgtagatatcatagaaaccccaaggctctatctttctattttcaccatagccatggttccgttcctgtttttgtcgagtgaaaataaaacaacacggggctttcgggtctgtaccgtgaatgagagtgatttcaaccattgcagataacagggaactgtaaattgaaagctggctccttgtattctgtttgtataaattctgtatagcgatccgctgtaacttaaatactagtcagaaaatacattgtgttcgtcagtatatagcaaatcaaagtactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="38563" stop="41207"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38871" g_stop="39011" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="154" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39012" i_stop="39098" i_length="87">
            <donor d_prob="0.953" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39099" g_stop="39274" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="330" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39275" i_stop="39525" i_length="251">
            <donor d_prob="0.874" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39526" g_stop="39614" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="419" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39615" i_stop="39744" i_length="130">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39745" g_stop="39814" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="489" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="39815" i_stop="39990" i_length="176">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39991" g_stop="40096" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="595" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40097" i_stop="40649" i_length="553">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="40650" g_stop="40907" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="852" r_length="257" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E733068" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38871" e_stop="39011"/>
          <exon e_start="39099" e_stop="39274"/>
          <exon e_start="39526" e_stop="39614"/>
          <exon e_start="39745" e_stop="39814"/>
          <exon e_start="39991" e_stop="40096"/>
          <exon e_start="40650" e_stop="40907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAGCGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCTGGGGGTCCATTGGCATGTGAGTTGGCACGACACGGTGTAGTTCTTAAGGTTGAGGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATGGTAATTAGCTAATCAGCTGCCCGGTTTTCTGGTTTTCTAGGATACATGTAAAATGATTTTCTAATATGATTATTAATGTTATTGCAGTTGCCTATGGCTTAGAAAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCCCTTTTATAGCCACCAGGGGCTATGACAGTGTTGTGTGGAACCGTTTGTACTCCAGAGATGGCGTGGAGCTGGAAAACTACCAGCTTGAGCAGGTTATATGCAGTTCCTTCTGTGCACATACAGCAAGCTGTCCTCTCATATCATGTGAACTTATCTCGTTTTCATCCTGAATCGATGGCAATTGTTTCTCAGTCAGCTCTTTCCGGAGTTGTATTTACTAGTTTATTGCCTATTGTTCTTTCCTGTGTTGAAATCAGTTATGTTTAGTTTCTTATCTTAATGTAACATGGTTATATCAAGTGATGCTAATCTGTAACTTAATGATTTTCTCCTTTACTATCAGGTACAATATCTTCTTGAAGAGACACTACAAAGTGTGGGCGCCAAAGCTATGGTTGTAGGACATACTCCTCAACCGATGGGAGTAAATTGGTAGAGGAACTTGATATCATCGTTATTTTTCCAAAAGCAATACTAAGATAGACACTTTGTATTAGACATGATTAATTACTAAAACCAATGATTACTACTCGTTTCTTGATTATTTTTGGTTTTCCTGCAGTAAATACAACTGTAGCATATGGCGAATTGACGTAGGAATGTCCAGAGGAGTACTTGACTCAAGCCCTGAGGTGATTTCCTTTCTGGCTCATGTACTATTATAATTCCAATATAATATGTACAACTCACTCTGTTAAGAGGCGACGATTTTCTTAATTTATTTTCAACTTATTGTCATATTAGCTTAGCATACTTGTACGGCTCATGCACCCTCTTATGCTTGGAGTCTTCGATTGTCTTTTATCAGGTACTAGAAATAAGAGATAATAAAGCTAGGGCCATAAGGAGCACCAGGGATTGGTCCAGTGAACTTCAGGTCGCTGATTACACGTAGATATCATAGAAACCCCAAGGTATGCTGAGAAGAACTTCCATTCTTCATTTGGTATGAGGTTTCACTTTACCATTGTAAGGGCTGATGGAAGCTCCTGACCCGCACCCTCCTTGCAAATATTAAACCTAAACGAAGAATAATACTAAAAATGGACATCTACTTACTTTCACTTTATTTTTGTTTGCATTTCATGATTTTGAATGGTTAAACTGAATGCATATAATTTTCGATGGATAGGTGCGATGAGAATGTTTTGTTTAAAAGAGAAACGTCAAGAATTTCATAAAATCCCTGAGTTCCCTTCTCAGTGAATGAACTTGTTATAATTTTTCCTTTTGTTCTTGGATTTGTTTGGCAAGTGTTCGCCAAGAGCAAATATACATGTAGGATTTCTGAGATTCTCTTTTCTCAACCCCAAAACATTTTGTTTAAGAATTTGTAACCTTGTAGGAAATCATAAGATATAAATTGTTAGCACGTTATCTGCGAACCCAAAACTTTACTCATCATAGGATCATTTTGTGATATTTATGAATTGTGATACATCATTTCATCTTTTTCTGTGTCTCCAGGCTCTATCTTTCTATTTTCACCATAGCCATGGTTCCGTTCCTGTTTTTGTCGAGTGAAAATAAAACAACACGGGGCTTTCGGGTCTGTACCGTGAATGAGAGTGATTTCAACCATTGCAGATAACAGGGAACTGTAAATTGAAAGCTGGCTCCTTGTATTCTGTTTGTATAAATTCTGTATAGCGATCCGCTGTAACTTAAATACTAGTCAGAAAATACATTGTGTTCGTCAGTATATAGCAAATCCAAGGTACTGGT</genome_strand>
        <mrna_strand>GA-AGCGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCTGGGGGTCCATTGGCATGTGAGTTGGCACGACACGGTGTAGTTCTTAAGGTTGAGGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATG.......................................................................................TTGCCTATGGCTTAGAAAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCCCTTTTATAGCCACCAGGGGCTATGACAGTGTTGTGTGGAACCGTTTGTACTCCAGAGATGGCGTGGAGCTGGAAAACTACCAGCTTGAGCAG...........................................................................................................................................................................................................................................................GTACAATATCTTCTTGAAGAGACACTACAAAGTGTGGGCGCCAAAGCTATGGTTGTAGGACATACTCCTCAACCGATGGGAGTAAATTG..................................................................................................................................TAAATACAACTGTAGCATATGGCGAATTGACGTAGGAATGTCCAGAGGAGTACTTGACTCAAGCCCTGAG................................................................................................................................................................................GTACTAGAAATAAGAGATAATAAAGCTAGGGCCATAAGGAGCACCAGGGATTGGTCCAGTGAACTTCAGGTCGCTGATTACACGTAGATATCATAGAAACCCCAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATCTTTCTATTTTCACCATAGCCATGGTTCCGTTCCTGTTTTTGTCGAGTGAAAATAAAACAACACGGGGCTTTCGGGTCTGTACCGTGAATGAGAGTGATTTCAACCATTGCAGATAACAGGGAACTGTAAATTGAAAGCTGGCTCCTTGTATTCTGTTTGTATAAATTCTGTATAGCGATCCGCTGTAACTTAAATACTAGTCAGAAAATACATTGTGTTCGTCAGTATATAGCAAAT-CAAAGTACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540238" ref_strand="+" ref_description="SGN-E540238 [TUS-60-G15](-)">
      <seq>ttgttttgtattttgctcttagatgnctgagttctgcgtagcattccacaaaggggtatctgtggctgtgatagatttaaatctgggtcaattggggatgtctttcagataattgtgaagaaggacggatatagaggtcttatgaggggatggatgccaaggatgctcttccatgctcctgctgctgcaatttgctggtctacatatgaagcttccaaggccttcttccaggagcacaacactgttaacaacactgcaacggcctgaatatatagtacgaaagggaatattatcacttatctccacgccaaaaaaaaaaaaagacaagagaaagagagaattctctctattgttgtatgcatatgataatttatggttgagacagaaattccacctgatgtgggtttgaggacggagaaacaagaagagagattgtgtacttattttgcgtctaccatcacaaagttatattttcatttttatttagggtttgtataaaattataataagttggtgagattgagtcctccgtttttgatgatttttttcttcttcatatcatgaagaaataggatgaattggtttagaaaattttgggtatttaattcatcacatgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42379" stop="41085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42079" g_stop="42026" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42025" i_stop="41951" i_length="75">
            <donor d_prob="0.726" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41950" g_stop="41386" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="619" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E540238" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42079" e_stop="42026"/>
          <exon e_start="41950" e_stop="41386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGGGTAGGTTGTCCTTAATCTAAAGTGAGGCATTTGCTAAATTACGTTACTCATTCCATCTTTAATGTGTTGATGCAGGGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATTTGCTGGTCTACATATGAAGCTTCCAAGGCCTTCTTCCAGGAGCACAACACTGTTAACAACACTGCAACGGCCTGAATATATAGTACGAAAGGGAATATTATCACTTATCTCCACGCCAAAAAAAAAAAAAGACAAGAGAAAGAGAGAATTCTCTCTATTGTTGTATGCATATGATAATTTATGGTTGAGACAGAAATTCCACCTGATGTGGGTTTGAGGACGGAGAAACAAGAAGAGAGATTGTGTACTTATTTTGCGTCTACCATCACAAAGTTATATTTTCATTTTTATTTAGGGTTTGTATAAAATTATAATAAGTTGGTGAGATTGAGTCCTCCGTTTTTGATGATTTTTTTCTTCTTCATATCATGAAGAAATAGGATGAATTGGTTTAGAAAATTTTGGGTATTTAATTCATCACATGAGA</genome_strand>
        <mrna_strand>TTGTTTTGTATTTTGCTCTTAGATGNCTGAGTTCTGCGTAGCATTCCACAAAGG...........................................................................GGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATTTGCTGGTCTACATATGAAGCTTCCAAGGCCTTCTTCCAGGAGCACAACACTGTTAACAACACTGCAACGGCCTGAATATATAGTACGAAAGGGAATATTATCACTTATCTCCACGCCAAAAAAAAAAAAAGACAAGAGAAAGAGAGAATTCTCTCTATTGTTGTATGCATATGATAATTTATGGTTGAGACAGAAATTCCACCTGATGTGGGTTTGAGGACGGAGAAACAAGAAGAGAGATTGTGTACTTATTTTGCGTCTACCATCACAAAGTTATATTTTCATTTTTATTTAGGGTTTGTATAAAATTATAATAAGTTGGTGAGATTGAGTCCTCCGTTTTTGATGATTTTTTTCTTCTTCATATCATGAAGAAATAGGATGAATTGGTTTAGAAAATTTTGGGTATTTAATTCATCACATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E540240" ref_strand="+" ref_description="SGN-E540240 [TUS-60-G15]">
      <seq>ttgttttgtattttgctcttagattgctgagttctgcgtagcattccacaaaggggtatctgtggctgtgatagatttaaatctgggtcaattggggatgtctttcagataattgtgaagaaggacggatatagaggtcttatgaggggatggatgccaaggatgctcttccatgctcctgctgctgcaatttgctggtctacatatgaagcttccaaggccttcttccaggagcacaacactgttaacaacactgcaacggcctgaatatatagtacgaaagggaatattatcacttatctccacgccaaaaaaaaaaaaagacaagagaaagagagaattctctctattgttgtatgcatatgataatttatggttgagacagaaattccacctgatgtgggtttgaggacggagaaacaagaagagagattgtgtacttattttgcgtctaccatcacaaagttatattttcatttttatttagggtttgtataaaattataataagttggtgagattgagtcctccgtttttgatgatttttttcttcttcatatcatgaagaaataggatgaattggtttagaaaattttgggtatttaattcatcacatgagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42379" stop="41085"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42079" g_stop="42026" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42025" i_stop="41951" i_length="75">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41950" g_stop="41386" g_length="565"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="619" r_length="565" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E540240" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E540240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42079" e_stop="42026"/>
          <exon e_start="41950" e_stop="41386"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGGGTAGGTTGTCCTTAATCTAAAGTGAGGCATTTGCTAAATTACGTTACTCATTCCATCTTTAATGTGTTGATGCAGGGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATTTGCTGGTCTACATATGAAGCTTCCAAGGCCTTCTTCCAGGAGCACAACACTGTTAACAACACTGCAACGGCCTGAATATATAGTACGAAAGGGAATATTATCACTTATCTCCACGCCAAAAAAAAAAAAAGACAAGAGAAAGAGAGAATTCTCTCTATTGTTGTATGCATATGATAATTTATGGTTGAGACAGAAATTCCACCTGATGTGGGTTTGAGGACGGAGAAACAAGAAGAGAGATTGTGTACTTATTTTGCGTCTACCATCACAAAGTTATATTTTCATTTTTATTTAGGGTTTGTATAAAATTATAATAAGTTGGTGAGATTGAGTCCTCCGTTTTTGATGATTTTTTTCTTCTTCATATCATGAAGAAATAGGATGAATTGGTTTAGAAAATTTTGGGTATTTAATTCATCACATGAGA</genome_strand>
        <mrna_strand>TTGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGG...........................................................................GGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATTTGCTGGTCTACATATGAAGCTTCCAAGGCCTTCTTCCAGGAGCACAACACTGTTAACAACACTGCAACGGCCTGAATATATAGTACGAAAGGGAATATTATCACTTATCTCCACGCCAAAAAAAAAAAAAGACAAGAGAAAGAGAGAATTCTCTCTATTGTTGTATGCATATGATAATTTATGGTTGAGACAGAAATTCCACCTGATGTGGGTTTGAGGACGGAGAAACAAGAAGAGAGATTGTGTACTTATTTTGCGTCTACCATCACAAAGTTATATTTTCATTTTTATTTAGGGTTTGTATAAAATTATAATAAGTTGGTGAGATTGAGTCCTCCGTTTTTGATGATTTTTTTCTTCTTCATATCATGAAGAAATAGGATGAATTGGTTTAGAAAATTTTGGGTATTTAATTCATCACATGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285936" ref_strand="+" ref_description="SGN-E285936 [cLES-13-G18]">
      <seq>tgttttgtattttgctcttagattgctgagttctgcgtagcattccacaaaggggtatctgtggctgtgatagatttaaatctgggtcaattggggatgtctttcagataattgtgaagaaggacggatatagaggtcttatgaggggatggatgccaaggatgctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="42378" stop="41536"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42078" g_stop="42026" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42025" i_stop="41951" i_length="75">
            <donor d_prob="0.726" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41950" g_stop="41836" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="168" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E285936" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42078" e_stop="42026"/>
          <exon e_start="41950" e_stop="41836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGGGTAGGTTGTCCTTAATCTAAAGTGAGGCATTTGCTAAATTACGTTACTCATTCCATCTTTAATGTGTTGATGCAGGGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCT</genome_strand>
        <mrna_strand>TGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGG...........................................................................GGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E621758" ref_strand="+" ref_description="SGN-E621758 [72117]">
      <seq>ggaactggaaccctagttttcccatccatggccaccgatgcttcgccgaagtttcaacaacgggacctattaccggttccgcaaccacctgattaccacccggtggttgccgtttctccggcacatgacggactccatttttggcagtttatggtcgccgggtcaattgccggtacggttgaacacatggcgatgttccctgtagatacaatcaagacccaaatgcaagccctaggtacttgtcccttaagatctgccagtatccgtacggcgcttaggggaattcttaaatccgaaggtgttgctggactttatcgtggcattggagctatgggacttggtgctggtccagcccatgctgtttatttctctgtttatgagagttgtaagaagaaattttccggtgggaaccctaataattcagctgcacatgctatttcgggtgtttgcgctacagttgcaagtgatgcagtttttacaccgatggatacggtgaagcagaggttgcagctgagtgaaagcccgtataagggtgtattggattgtgtaaaaagggttttgaaggaagaggggtttaaggctttttatgcttcgtataaaactactgtcttgatgaatgccccatatacagctgtgcattttgctacgtatgaggcggtgaaacttggggttgtctggtgtttcggccggatagtgcaagtgatgaaagtataatagttcatgccactgctggggcggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44742" stop="43406"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44442" g_stop="43706" g_length="737"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E621758" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E621758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44442" e_stop="43706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCAGTGCCGCAACCACCCGATTACCATCCGGTGGTTGCCGTTTCGCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCTCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCGGGACTTTACCGTGGCATTGGTGCTATGGGACTCGGTGCTGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATGAGAGTTGTAAGAAGAAATTTTCCGGTGGGAATCCGAATAATTCAGTTGCACATGCTATTTCGGGTGTTTGCGCCACAGTTGCAAGTGATGCAGTTTTTACACCGATGGATACGGTGAAGCAGAGGTTGCAGCTGAGTGAAAGCCCGTATAAGGGTGTATTGGATTGTGTAAAAAGAGTTTTGAAGGAAGAGGGGTTTAAGGCTTTTTATGCTTCGTATAAAACTACTGTCTTGATGAATGCCCCATATACAGCTGTGCATTTTGCTACGTATGAGGCAGCGAAAC-TGGGGCTGTCCGGTGTTTC-GCCAGATAGTGCAAGTGATGAAAGTATAATAGTTCATGCTACTGCTGGGGCAGC</genome_strand>
        <mrna_strand>GGAACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCGGTTCCGCAACCACCTGATTACCACCCGGTGGTTGCCGTTTCTCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCCCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTAGGGGAATTCTTAAATCCGAAGGTGTTGCTGGACTTTATCGTGGCATTGGAGCTATGGGACTTGGTGCTGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATGAGAGTTGTAAGAAGAAATTTTCCGGTGGGAACCCTAATAATTCAGCTGCACATGCTATTTCGGGTGTTTGCGCTACAGTTGCAAGTGATGCAGTTTTTACACCGATGGATACGGTGAAGCAGAGGTTGCAGCTGAGTGAAAGCCCGTATAAGGGTGTATTGGATTGTGTAAAAAGGGTTTTGAAGGAAGAGGGGTTTAAGGCTTTTTATGCTTCGTATAAAACTACTGTCTTGATGAATGCCCCATATACAGCTGTGCATTTTGCTACGTATGAGGCGGTGAAACTTGGGGTTGTCTGGTGTTTCGGCCGGATAGTGCAAGTGATGAAAGTATAATAGTTCATGCCACTGCTGGGGCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E595348" ref_strand="+" ref_description="SGN-E595348 [38620]">
      <seq>cgcaactcttcttcctccccaaaccttccagaaaatccctaaaaaaaagaagcttaaagctttctcttttcttgattttactgctctctaagttattgagccgctaattctggtacagaaaaggaaccaaattgaccacaacccgtacccgaacccgacccgaaccggaaggtactggaaccctagttttcccatccatggccaccgatgcttcgcctaagtttcaacaacgggacctattaccggttccgcaaccacctgattaccacccggtcgttgccgtttctccggcacatgacggactccatttttggcagtttatggtcgccgggtcaattgccggtaccgttgaacacatggcgatgttccctgtagatacaatcaagacccaaatgcaagccctaggtacttgtcccttaagatctgccagtatccgtacggcgcttgggggaattcttaaatccgaaggtgttgctggactttatcgtggcattggagctatgggactcggtgccggtccagcccatgctgtttatttctctgtttatgagagttgcaagaagaaattttccggtgggaatcctaataattcagctgcacatgctatttcgggtgtttgcgctacagttgcaagtgatgcagtttttacaccgatggatacggtgaagcagaggttgcagctgagtgaaagcccgtataagggtgtattggattgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44910" stop="43596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44610" g_stop="43896" g_length="715"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E595348" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E595348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44610" e_stop="43896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCAACTCTTCTTCCTCCTCAAACCCTCCACAAAATTCCT-CAAAAAA-AAGCTTAAAGCTTTCTCTTTTCTTGATTTTACGGTTCTCTGAGTTATTGAGCCGCTAATTCTGGTACAGAAAAGGAACTAAATTGACCACAACCCGTACTCAAACCCGACCCGAACCGGAAGGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCAGTGCCGCAACCACCCGATTACCATCCGGTGGTTGCCGTTTCGCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCTCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCGGGACTTTACCGTGGCATTGGTGCTATGGGACTCGGTGCTGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATGAGAGTTGTAAGAAGAAATTTTCCGGTGGGAATCCGAATAATTCAGTTGCACATGCTATTTCGGGTGTTTGCGCCACAGTTGCAAGTGATGCAGTTTTTACACCGATGGATACGGTGAAGCAGAGGTTGCAGCTGAGTGAAAGCCCGTATAAGGGTGTATTGGATTGTG</genome_strand>
        <mrna_strand>CGCAACTCTTCTTCCTCCCCAAACCTTCCAGAAAATCCCTAAAAAAAAGAAGCTTAAAGCTTTCTCTTTTCTTGATTTTACTGCTCTCTAAGTTATTGAGCCGCTAATTCTGGTACAGAAAAGGAACCAAATTGACCACAACCCGTACCCGAACCCGACCCGAACCGGAAGGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCTAAGTTTCAACAACGGGACCTATTACCGGTTCCGCAACCACCTGATTACCACCCGGTCGTTGCCGTTTCTCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACCGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCCCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCTGGACTTTATCGTGGCATTGGAGCTATGGGACTCGGTGCCGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATGAGAGTTGCAAGAAGAAATTTTCCGGTGGGAATCCTAATAATTCAGCTGCACATGCTATTTCGGGTGTTTGCGCTACAGTTGCAAGTGATGCAGTTTTTACACCGATGGATACGGTGAAGCAGAGGTTGCAGCTGAGTGAAAGCCCGTATAAGGGTGTATTGGATTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269035" ref_strand="+" ref_description="SGN-E269035 [cLEI-16-F23]">
      <seq>aaagtcgacagtttttagcaaaattcccaattttttggaaccctaaacctaaccgcaactcttcttcctcctcaaaccctccacaaaattcctcaaaaaaaagcttaaagctttctcttttcttgattttacggttctctgagttattgagccgctaattctggtacagaaaaggaactaaattgaccacaacccgtactcaaacccgacccgaaccggaaggtactggaaccctagttttcccatccatggccaccgatgcttcgccgaagtttcaacaacgggacctattaccagtgccgcaaccacccgattaccatccggtggttgccgtttcgccggcacatgacggactccatttttggcagtttatggtcgccgggtcaattgccggtacggttgaacacatggcgatgttccctgtagatacaatcaagacccaaatgcaagctctaggtacttgtcccttaagatctgccagtatccgtacggcgcttgggggaattcttaaatccgaaggtgttgcgggactttaccgtggcattggtgctatgggactcggtgctggtccagcccatgctgnttatttctctgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="44963" stop="43764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44663" g_stop="44064" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E269035" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44663" e_stop="44064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCGACAGTTTTTAGCAAAATTCCCAATTTTTTGGAACCCTAAACCTAACCGCAACTCTTCTTCCTCCTCAAACCCTCCACAAAATTCCTCAAAAAAAAGCTTAAAGCTTTCTCTTTTCTTGATTTTACGGTTCTCTGAGTTATTGAGCCGCTAATTCTGGTACAGAAAAGGAACTAAATTGACCACAACCCGTACTCAAACCCGACCCGAACCGGAAGGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCAGTGCCGCAACCACCCGATTACCATCCGGTGGTTGCCGTTTCGCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCTCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCGGGACTTTACCGTGGCATTGGTGCTATGGGACTCGGTGCTGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATG</genome_strand>
        <mrna_strand>AAAGTCGACAGTTTTTAGCAAAATTCCCAATTTTTTGGAACCCTAAACCTAACCGCAACTCTTCTTCCTCCTCAAACCCTCCACAAAATTCCTCAAAAAAAAGCTTAAAGCTTTCTCTTTTCTTGATTTTACGGTTCTCTGAGTTATTGAGCCGCTAATTCTGGTACAGAAAAGGAACTAAATTGACCACAACCCGTACTCAAACCCGACCCGAACCGGAAGGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCAGTGCCGCAACCACCCGATTACCATCCGGTGGTTGCCGTTTCGCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCTCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCGGGACTTTACCGTGGCATTGGTGCTATGGGACTCGGTGCTGGTCCAGCCCATGCTGNTTATTTCTCTGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372870" ref_strand="+" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65130" stop="2075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64830" g_stop="64592" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64591" i_stop="64325" i_length="267">
            <donor d_prob="0.894" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64324" g_stop="64300" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="263" r_length="24" r_score="0.680"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E372870" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64830" e_stop="64592"/>
          <exon e_start="64324" e_stop="64300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAAGAGAGAAAAGAAGAGTCAGACATCACAGAGGAAGATATTCTGTGAGAAAAATTAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAAAGTGTAGTGATCTTTGGAGTATTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCTTTGCTCCACTCGGGTCGTGGTTTTTCCCTTATTTAGGAAGGTTTTCACGTAAAATCTTCGTGTCATTATTCCTCTTTTATTCTCGTTGATTAACCGCATTGTTGTGTTCCGCATTTATTGCCTTTATTACCGCAAATATTATTTCTGTTATGGATTTATTCCCAACAATTACAACACAAAAAGAAAAGTTCAAAAATATATACATTAATTTACTTTTGTTAGACCAACATTTTCGTAATCGTCATGTTACTTGTAATCTTAAGAGTCTGGGTTTGAGTCATCAAACAAATAAAAAGGATGAAAATTCCTAAAGAGGATCAAAGTAGAATAAAAAATAACA</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC...........................................................................................................................................................................................................................................................................G-TAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378778" ref_strand="+" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65130" stop="2075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64830" g_stop="64592" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64591" i_stop="64325" i_length="267">
            <donor d_prob="0.894" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64324" g_stop="64300" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="263" r_length="24" r_score="0.680"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E378778" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>264</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64830" e_stop="64592"/>
          <exon e_start="64324" e_stop="64300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAAGAGAGAAAAGAAGAGTCAGACATCACAGAGGAAGATATTCTGTGAGAAAAATTAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAAAGTGTAGTGATCTTTGGAGTATTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCTTTGCTCCACTCGGGTCGTGGTTTTTCCCTTATTTAGGAAGGTTTTCACGTAAAATCTTCGTGTCATTATTCCTCTTTTATTCTCGTTGATTAACCGCATTGTTGTGTTCCGCATTTATTGCCTTTATTACCGCAAATATTATTTCTGTTATGGATTTATTCCCAACAATTACAACACAAAAAGAAAAGTTCAAAAATATATACATTAATTTACTTTTGTTAGACCAACATTTTCGTAATCGTCATGTTACTTGTAATCTTAAGAGTCTGGGTTTGAGTCATCAAACAAATAAAAAGGATGAAAATTCCTAAAGAGGATCAAAGTAGAATAAAAAATAACA</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC...........................................................................................................................................................................................................................................................................G-TAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372869" ref_strand="+" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctttaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65131" stop="2075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64831" g_stop="64592" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64591" i_stop="64325" i_length="267">
            <donor d_prob="0.894" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64324" g_stop="64302" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="263" r_length="23" r_score="0.652"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E372869" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64831" e_stop="64592"/>
          <exon e_start="64324" e_stop="64302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTCAGACATCACAGAGGAAGATATTCTGTGAGAAAAATTAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAAAGTGTAGTGATCTTTGGAGTATTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCTTTGCTCCACTCGGGTCGTGGTTTTTCCCTTATTTAGGAAGGTTTTCACGTAAAATCTTCGTGTCATTATTCCTCTTTTATTCTCGTTGATTAACCGCATTGTTGTGTTCCGCATTTATTGCCTTTATTACCGCAAATATTATTTCTGTTATGGATTTATTCCCAACAATTACAACACAAAAAGAAAAGTTCAAAAATATATACATTAATTTACTTTTGTTAGACCAACATTTTCGTAATCGTCATGTTACTTGTAATCTTAAGAGTCTGGGTTTGAGTCATCAAACAAATAAAAAGGATGAAAATTCCTAAAGAGGATCAAAGTAGAATAAAAAATAA</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTTTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC...........................................................................................................................................................................................................................................................................GTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="65130" stop="64291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64830" g_stop="64592" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64830" e_stop="64592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAAGAGAGAAAAGAAGAGTCAGACATCACAGAGGAAGATATTCTGTGAGAAAAATTAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAAAGTGTAGTGATCTTTGGAGTATTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCTTTGCTCCACTCGGGTCGTGGTTTTTCCCTTATTTAGGAAGGTTTTCAC</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325249" ref_strand="+" ref_description="SGN-E325249 [cTOC-1-G8]">
      <seq>ttggtgaaaggaagccctctttcatcatatgcgcattctcctctgtttacgggcatgagcctacctgttgcactgcactgtaggaaactacaaagcatgattggtggtgctccaggattgctgtataacaaaagcaaaactacaatgcatatatactggccctccgttagcagctattttaagataccaaccatgattgatgtttcgcttcaatggaaaaaacatggtccgagacatatgttaatagtcaaagttgaagagcaaggagcaggaccatctgaagctggagctggagcagagccatctggagctggagcatcaaaacgttctaaagtaggtggcggcgtttgaagagactacgaatttctgcatcacagatgtaattttcattttgtccatctattatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="71937" stop="70830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="71637" g_stop="71373" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="265" r_length="265" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71372" i_stop="71274" i_length="99">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71273" g_stop="71130" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="409" r_length="144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E325249" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="71637" e_stop="71373"/>
          <exon e_start="71273" e_stop="71130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGTGAAAGGAAGCCCTCTTTCATCATATGCGCATTCTCCTCTGTTTACGGGCATGAGCCTACCTGTTGCACTGCACTGTAGTAAACTAGAAAGCATGATTGGTGGTGCTCCAGGATTGCTGTATAACAAAAGCAAAACTACAATGCATATATACTGGCCCTCCGTTAGCAGCTATTTTAAGATACCAACCATGATTGATGTTTCGTTTCAATGGAAAAAACATGGTCCGAGACATATGTTAATAGTCAAAGTTGAAGAGCAAGGTAATTAGTTAGGACTTCATGATTTTTGTCTTCCTTTATGATTCTTCTATAGTTTTTTTGTTTAACTAGGTTATTTTCTTGCTCACCCATTTGGAACAGGAGCAGGACCATCTGAAGCTGGAGCTGGAGCAGAGCCATCTGGAGCTGGAGCATCAAAACGTTCTAAAGTAGGTGGCGGCGTTTGAAGAGACTACGAATTTCTGCATCACAGATGTAATTTTCATTTTGTCCATCTATTATATG</genome_strand>
        <mrna_strand>TTGGTGAAAGGAAGCCCTCTTTCATCATATGCGCATTCTCCTCTGTTTACGGGCATGAGCCTACCTGTTGCACTGCACTGTAGGAAACTACAAAGCATGATTGGTGGTGCTCCAGGATTGCTGTATAACAAAAGCAAAACTACAATGCATATATACTGGCCCTCCGTTAGCAGCTATTTTAAGATACCAACCATGATTGATGTTTCGCTTCAATGGAAAAAACATGGTCCGAGACATATGTTAATAGTCAAAGTTGAAGAGCAAG...................................................................................................GAGCAGGACCATCTGAAGCTGGAGCTGGAGCAGAGCCATCTGGAGCTGGAGCATCAAAACGTTCTAAAGTAGGTGGCGGCGTTTGAAGAGACTACGAATTTCTGCATCACAGATGTAATTTTCATTTTGTCCATCTATTATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239407" ref_strand="+" ref_description="SGN-E239407 [cLED-23-E1]">
      <seq>catttccccttgagcattctctttctcgtctgggatggatatcaaatctattaaagatttattggagcagatgttgaaccaagttcaacatcaacatactggggattccaaagatgtatatgaaatgatagggaagctagagcagattaaatcatatcttttaaccgaagcaatgcatagcaatgtattttctggatttccttcccttcattcacctacacctcaacaaccttctcctccagtagctgaccagcaatcattagtatcaaatcaacaaactactcctctgatagctggccagcaagtaatgacacaggcagtagacactgtttctcccatgaacttgggacaaccaacaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79189" stop="71511"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78858" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78857" i_stop="72232" i_length="6626">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72231" g_stop="72094" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="170" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72093" i_stop="72003" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72002" g_stop="71811" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="362" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E239407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78858"/>
          <exon e_start="72231" e_stop="72094"/>
          <exon e_start="72002" e_stop="71811"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCCCTTGAGCATTCTCTTTCTCGTCTGGTAAGTTCAATTCCTTTTTTTTTCTCATTTCTTAGCTAAATAATCGACGTTTTTGTGTTAAAAAGATGAAGAGTAGTTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTATTAGAAAATGAAGAGTAGGTTCTGGGTTACCTAAAAATTTGATGTTTTTGTGTTAAAAAAGCTAGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTCGTGTTACAAGATGACTTGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTAAAAAAGATGATAGGTTCTGGGTTAGCTGAAAAATTGATGTTTTTGTGTTAGAAGATGAAGAGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTTAAAAGATGAAGAGTACTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTCGTTAATGAAGGAAGCTTCATGACGTTAGGAAGAAGAAGAAAAATCAGTTAAGAAATAGCTAAGAAGAAGAAGAAGCAGTTAAGAAGAAGAAGGAAGAGTAGTTTATTCTTGTATATGGTGTGTTTTTCATGTACAGAGAATGAGCTGTATATATAGCTCTTTAACATGCCCAACTATTATCAACTTTGTAACTAACTAATTGAAAAGTAGTTATAACTAACTTTCAGTAAAAAGACTATTCTACCCTTTCTATATTCAACAACTTTTCTATATTACAACACTCCCCTTCAAGCTAGGAGGTGCAAAAATATTCAAAACCCCTAGCTTGGATAACAAGTGTTCATGTTGTAGTCTAGATAACCCTTTTGTCAATACATCAGCTGGCTGTTCTTTGGTATGAATGTACTCTACTTTAATCAGTCCCTTTTGTAACTTTTCTCTTATGAAATGGCAATCGATTTCAATATGTTTGGTCCTTTCATGGTATACTGGATTAGCAGCTATCTGAATAGCAGCCTTGCTATCACTGTAAACTTGGACTGGTACTTGAACCTTAGTACCTACTTCCTTCAACAATCCCAACAGCCACACCAATTCTGAAACAGTTGAAGCCAAGCTTCTATACTCAGCTTCAGCTGAGCTTCTCGACACTGTTGTTTGCTTCTTTGCCTTCCATGATATTAATGATCTACCAATCTTAATCATATACCCTGTCACAGACTTCCTAGTGGGTGGACAAGATGCCCAATCAGCATCACAGAATGCAGTAACTTGTCCATCTGAATCACTTGCCAATAACAGTCCTTGACCAGGTTGATTCTTTAGGTATCTGATCATCCTTAATGTAGTATCCAGATGAGACCTTTTTGGTTGCTGTAATAATTGACTCAATGTTTGAGTACTGAATGATATATCTGGTCTTGTCATATTCAAATACAACAACTTGCCTATTATCTTCTGATATGCTGTTTGATCAAAGGATCATCTGATTCTGCTTGCTTCACATGCTCATCATATAGTTTAGATGTTAGTTTGACATTGATGTCAATAGGTGTTCCTGCAGGCTTAGCTGCTGTTAGACCAACTTCAGCTATAAGTTCTAGTGCATACTTCCTTTGATGCATTAATATACCAGCTGCTGATCTGGTAAATTCAATGCCTAGAAAGTATTTTAACTCTCCTAAATCTTTCATCTTGAATGCTTGTTGTAGTGCCTTTTTTGTGTCTTCTATTAGTTTAAGACTACTGCCAGTAATTAGCATGTCATCAACATAAACCAATACTAATATAGTTCCCTCTTCTGACTGATTAATAAACAAGGAATAATCATGTTGACTTTGTTTGAACTTGAGATTGCTAAGAGCTTCAGTCAACTTTTGATTCCATTGCCTAGGAGCTTGTTTCAGACCATATAGGGACTTTGTTAGTCTACATACTTTCTCCCCCTGACCAACAAATCCCTGAGGTAGTTGCATATAAATCTCATCATCCAAATCACCTTGAAGAAAAGCATTGAATACATCTATCTGATGAATATGCCAATGCCTAGCTGCTGCAAAAGAAACAATGGTTCTGACTGTCACCATCTTAACAACAGGTGAGAAGGTCTCCGTTTAATCTATTCCTTCTTGTTGAGAATAACCTTTAGCCACTAGCCTTGCTTTGAGTCTCTCTATCTCTCCTGATGATTTGTATTTAACCTTATAAATCCATCTACACCCAATAGCCTTCTTCCCCTATGGCAGATCAGTAAGCTCCCAAGTATGATTACTTTCTAGTGCTTGAATTTCATGTTGCATGGCCTCTATCCATCTTTTATCTTGAACAATTTCTAGATAGGACTCAGGTTCCTTAACAACAGAAGTGGCTGCAATATAGCTTTGATATGTAGGGGAAAGATGATCATAACTCGTGTACTTTCCTAAAGAGTACATGACATCTTTGTTAACAGTCAAGGACACAATCTTTCATCCAAGTTGGTTTGAGTTTCTGTCTAGTAGATCTTCTATTAGTAGTAAGACTTGCAGACTCTTGATTCATCTCATTTCTACCATACCATCAGTTGGAACTTTTTCTACCTCATCAACAGAAGACAAAGTATGAGTCTCATGAGACACATTATCTTCATGAGACACAGTAGTGGAAGGACACCTGGGAATCACAGGATTTATACACTGTACATTACTACTTAGCATGTCTGAAATTTGCATAGGATCCACAAACACTCTTTCTTGTAATGAAGGCTCTATCTTTGTAAAAGGAAACACATCTTCTCTAAACACCACATCCCTACTTGTGAAGAATGATTTATCAGTTAGATCAAGAAGTAGATACCCCTTTTGTAACTCTGAATAACCCATAAGAACTGCTGGTCTTGATCTTGGCATCAACTTATCATGTTGTGTTAGAAGTTTAACAAAACACAAACATCCTAGAGTTTTGACATGAGATATTGATGGTTTACTACCATACAACCTTTCATAAGGAGTATTAAAATGTAGAACACTACTTGGTAACCTATTAATGATATATGCAGCAGTCAACATACACTGACCCCAATATCTGATAGGAATATGAGCTTGAAGTCTTAAAGCTCTGGTAACTTCAAGTAAGTGTCTATGCTTTCTCTCAGCAACCCCATTTTGCCGAGGAGTGTATGGACATGATCTTTGATGTAAGATTCCCAATTCTGTAAATAGCTTATGACATTCTGAGTTTACAAACTCAGTACCATTATCAGTCCTCAACACTTTAACCCTCTTTCCAAACTGAGTTTGAACATATTGCAGAAACATTCGAATGGAAACACACACAGCAGATTTATGTGATAGTAAAAACAGCCAAGTTACTCTTGAAAAATCATCCACAATTGTAAGAAAATACTTCTTGCCATCAACAGTAAATGTATTATAAGGACCCCAAAGATCAATATGAAGTAGCTCAAAACAAGCAGTACTTTTAATGCTACTATTAGGAAACACATTCCTTGTTTGTTTAGCAAATGGACATACAAGGCACTTAGAAATGCTACATGCACTTTGCTTATTCATTGAAAACATCCTTGCAAGCACTGTTGATGATACATGACCCAATCTTCTATACCATAACACCATGTCTGTCTCCTTGACATCATTAGCAGCAAATGCAGCCTCAACTTCCTTTTCTTGATCATTATACTGAGTAGTCAAATGCTTTATTAGCAAGTACAATCCTCCTTCCTCTTTACCAACTTCTTTCACCTTCCCACTGTAGAGTTCCTGGAAGACACAAAAATGAGGAAAAAAGGTAACAGAACACCCTAGTTCCTTAGTGATCTGACTTACTGATAACAAGTTATACTTGAAATCAGGTATGTGAAGCACATTTGATATAACACTCCTTGTTGATAGACTACAAGACCCAATGTGAGACACCTGAGTAGTAGTACCATTTGGTAGATAAACAGGCTTAAAGACTTCATGCACAGTGTTTTTAGTCAACATATTCAAACTAGACACCATATGGTTTGTTGCACCAGTATCTATAATCCACATATTACTATGTGCAGAAACAAAAGATGTTTTACCTGTATTGTTTGCACTATTACACATAAAAGTTGTAGGCTCAGACTTTTGTTGAATCATTTTTAGAATGTGATCATATTGATCCTTAATAAATGTACATCCTTGAAGCAACTGTTGAACCTCTTTCTCTACCGGACTCACTGTTCTGTTAACACTGAGAGTGGTAATCTCTGATGAAGATTGATACTGCTCAGATATATTTCCCCATCCCGGTGGAGGAACATTGGTGTTCATTTCATAAGTAAGATTTGCATGTGTTAATTGTGCCTGACTGTAGTTGTTACTACCAGTATTACCATATGCAGGAGAAGTTCCTTGCACTTTTCTTTTGGACTTAAAATCAGGAGGATAGCCTACAATCTTGTAACAAAATTCTTTGCTGTGACCCTTACATTTGTAAAAATCACATATCAACAATGTGTTTCTTTTCAATTTCTGACTTACATTGGAGCTGCTACTTGCTTTAGAATATAGAGCAACTGACTCCAATGCAGCTGAAATACTATTAACACCACTTACTACAGCCTTTTGACTCTCATCACCAACTATCATAGCATAGGCATAGTTAATTGATGGTAATGGATCCATCATCAAGATTTGACTCCTTGCTTGATGATAGGAGTCTTTTAAACCCATTAGAAACTGGTATAACTTCTGCCTATTCATATGAGCAACAAAGCCTTTGGATATTTCACAGTTACAACAAGGAGATGGCACCATCACCTCAAATTCATCCCACAAGCTTTTCAGCTTTGTATAATACACAGAAACAGAAACAGTACCCTGCTGTAGTGAAGTTATATCTTTGTGTAGACTATAAGTTCTAGAGCCATCTATTCTATCAAATCTTTCTTTTAGATTAGTCCAAACATCAAAAGCAGTAGAAGCAAATGCAATGCCACTTAGTTAACTCTTGGATACAGAATTCATTAACCATGACAAAACAATAGCATTCACTCTTTCCCATTGCCCCCATATTTCCTTACCAAACATCTTCTTTCTAGCAGTTTCATCAATCAAACCCATCTTATTTCTTCCTAGTAAAGCTATCTTAATAGACCGACTCCACAAAGTGTAATTCTCAACACCAAGCAACTGAAACGAGATAATACTCATTCCACTAACATCAGTAGGATTAAGAAACAAAGGATGGTTATAATCGATACCTTGACTCTGCCCAGAAATGACTTGTGAAGATCTGTTTTGGACTGAATCTTCATTTTCACCTTCAATTGCCATTTGAGATTTGAAAAACAATGATTCAGCAGTAATTCAACAAACTTGAACTTAAAGATCTTTTCAACAACACTTGAGAAACTTGTGAATCTGTGAATCAGTAATTGATTCTTTGATCTTGTGATTTCTCTAAAAAACAAAACTGTGAATCTATGAATCAACTGTGATTCTTTGATTCTGTGGATTCTCCAGCTTCATCAGTGTTTACTGAGAAGCAACCTGGCTCTGATACCATGTTCGTTAATGAAGGAAGCTTCATGACGTTAGGAAGAAGAAGAAAAATCAGTTAAGAAATAGCTAAGAAGAAGAAGAAGAAGCAGTTAAGAAGAAGGAAGAGTAGTATATTCTTGTATATGGTGTGTTTTTCATGTACAAAGAATGAGCTGTATATATAGCTCTTTAACATGCCCAACTATTAACAACTTTGTAACTAACTAATTGAAAAGTAGTTATAACTAACTTTCAGTAAAAAGACTATTCTACCCTTTCTATATTCTACAACTTTTCTATATTACAACATTTTGTGTTAAAAAAGATGAAGAGTAGGTTCTGGGTTAACTAAAAATTTGATGTTTTTGTGTTAAAAGATGATAGGTTCTATGTTAGCTGAAAAATTGATGTATTTGTGTCAGAAATGAAGAGTAGGTTCTCGGTTAGCTAAAAATTTGATGTTCTTGTGTTAAAAAGATGAAGAGTACTGTGTTAGCTAAAAAATGATTTTTTTGTGTTAGAAGATGAAGAGTAGGTTCTGGATATATATGCTTCAAATCCATTGTGTAAACCAAATGTTTAGAAGATGACCAGTAGCTAGCTTCTAGTTTCACAAATGAAGTCATTGTGTATTTCTTGTTATTTTGTTATGGTTGAACTAAGAAATATGAAATGTTAGACTTCATGATAATTGCTTTATTGTCATTTGTGTTCTGAAATCTATGTCTAATTCCATGACAATGCATTTACTTTTTTCCTTGTTACGATCGTATTAGGTTTTTTTGTTTTTGTTTTCCTGCTGATTGTATTTGTGTTCTTAAGATTGTATTGGTCTAATGTCATATGTAAACTGATTTGAATTTGGTTTTCTGCTGAGTGTATTTATATGGTAGGTAGATGTTTAGCCATTGCAAGAAACAACTGGAAATAAAGAGCCCCTTATGTGGATTCCTTTGTCTAAGAATAATAACATGATCTTATTCGATTTTTTTCGTGCTGATTGTATTATTCTAATGCCGTGGCACACATGAAAATTATCTAATTTGAATTGATTTTCTGCTAATTGTTTTCCTCTAAATGATGTATAAAGTGATATATGGTTAGGTAGATATTTAGTCAAGTTACACTTGCATGAAATCCATTCAAGAGATAACTATTGTTTGATGTTTATTTGGGATAATAATGAAACTTCTGTCCAGGGATGGATATCAAATCTATTAAAGATTTATTGGAGCAGATGTTGAACCAAGTTCAACATCAACATACTGGGGATTCCAAAGATGTATATGAAATGATAGGGAAGCTAGAGCAGATTAAATCATATCTTTTAACCGAAGGTAATAATCAAACTATGTTTATAATTTAATTTTTTTTTTGTCTAGGTACTTTTTTTTGCTGATCAAATTTTGATATATTTCTTTGATAAAGCAATGCATAGCAATGTATTTTCTGGATTTCCTTCCCTTCATTCACCTACACCTCAACAACCTTCTCCTCCAGTAGCTGACCAGCAATCATTAGTATCAAATCAACAAACTACTCCTCTGATAGCTGGCCAGCAAGTAATGACACAGGCAGTAGACACTGTTTCTCCCATGAACTTGGGACAACCAACACCAA</genome_strand>
        <mrna_strand>CATTTCCCCTTGAGCATTCTCTTTCTCGTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGATATCAAATCTATTAAAGATTTATTGGAGCAGATGTTGAACCAAGTTCAACATCAACATACTGGGGATTCCAAAGATGTATATGAAATGATAGGGAAGCTAGAGCAGATTAAATCATATCTTTTAACCGAAG...........................................................................................CAATGCATAGCAATGTATTTTCTGGATTTCCTTCCCTTCATTCACCTACACCTCAACAACCTTCTCCTCCAGTAGCTGACCAGCAATCATTAGTATCAAATCAACAAACTACTCCTCTGATAGCTGGCCAGCAAGTAATGACACAGGCAGTAGACACTGTTTCTCCCATGAACTTGGGACAACCAACACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239966" ref_strand="+" ref_description="SGN-E239966 [cLED-29-J1]">
      <seq>catttccccttgagcattctctttctcgtctgggatggatatcaaatctattaaagatttattggagcagatgttgaaccaagttcaacatcaacatactggggattccaaagatgtatatgaaatgatagggaagctagagcagattaaatcatatcttttaaccgaagcaatgcatagcaatgtattttctggatttccttcccttcattcacctacacctcaacaacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="79189" stop="71640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78889" g_stop="78858" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78857" i_stop="72232" i_length="6626">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72231" g_stop="72094" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="170" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72093" i_stop="72003" i_length="91">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72002" g_stop="71940" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="233" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E239966" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>233</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78889" e_stop="78858"/>
          <exon e_start="72231" e_stop="72094"/>
          <exon e_start="72002" e_stop="71940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCCCCTTGAGCATTCTCTTTCTCGTCTGGTAAGTTCAATTCCTTTTTTTTTCTCATTTCTTAGCTAAATAATCGACGTTTTTGTGTTAAAAAGATGAAGAGTAGTTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTATTAGAAAATGAAGAGTAGGTTCTGGGTTACCTAAAAATTTGATGTTTTTGTGTTAAAAAAGCTAGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTCGTGTTACAAGATGACTTGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTAAAAAAGATGATAGGTTCTGGGTTAGCTGAAAAATTGATGTTTTTGTGTTAGAAGATGAAGAGTAGGTTCTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTTAAAAGATGAAGAGTACTGGGTTAGCTAAAAATTTGATGTTTTTGTGTTCGTTAATGAAGGAAGCTTCATGACGTTAGGAAGAAGAAGAAAAATCAGTTAAGAAATAGCTAAGAAGAAGAAGAAGCAGTTAAGAAGAAGAAGGAAGAGTAGTTTATTCTTGTATATGGTGTGTTTTTCATGTACAGAGAATGAGCTGTATATATAGCTCTTTAACATGCCCAACTATTATCAACTTTGTAACTAACTAATTGAAAAGTAGTTATAACTAACTTTCAGTAAAAAGACTATTCTACCCTTTCTATATTCAACAACTTTTCTATATTACAACACTCCCCTTCAAGCTAGGAGGTGCAAAAATATTCAAAACCCCTAGCTTGGATAACAAGTGTTCATGTTGTAGTCTAGATAACCCTTTTGTCAATACATCAGCTGGCTGTTCTTTGGTATGAATGTACTCTACTTTAATCAGTCCCTTTTGTAACTTTTCTCTTATGAAATGGCAATCGATTTCAATATGTTTGGTCCTTTCATGGTATACTGGATTAGCAGCTATCTGAATAGCAGCCTTGCTATCACTGTAAACTTGGACTGGTACTTGAACCTTAGTACCTACTTCCTTCAACAATCCCAACAGCCACACCAATTCTGAAACAGTTGAAGCCAAGCTTCTATACTCAGCTTCAGCTGAGCTTCTCGACACTGTTGTTTGCTTCTTTGCCTTCCATGATATTAATGATCTACCAATCTTAATCATATACCCTGTCACAGACTTCCTAGTGGGTGGACAAGATGCCCAATCAGCATCACAGAATGCAGTAACTTGTCCATCTGAATCACTTGCCAATAACAGTCCTTGACCAGGTTGATTCTTTAGGTATCTGATCATCCTTAATGTAGTATCCAGATGAGACCTTTTTGGTTGCTGTAATAATTGACTCAATGTTTGAGTACTGAATGATATATCTGGTCTTGTCATATTCAAATACAACAACTTGCCTATTATCTTCTGATATGCTGTTTGATCAAAGGATCATCTGATTCTGCTTGCTTCACATGCTCATCATATAGTTTAGATGTTAGTTTGACATTGATGTCAATAGGTGTTCCTGCAGGCTTAGCTGCTGTTAGACCAACTTCAGCTATAAGTTCTAGTGCATACTTCCTTTGATGCATTAATATACCAGCTGCTGATCTGGTAAATTCAATGCCTAGAAAGTATTTTAACTCTCCTAAATCTTTCATCTTGAATGCTTGTTGTAGTGCCTTTTTTGTGTCTTCTATTAGTTTAAGACTACTGCCAGTAATTAGCATGTCATCAACATAAACCAATACTAATATAGTTCCCTCTTCTGACTGATTAATAAACAAGGAATAATCATGTTGACTTTGTTTGAACTTGAGATTGCTAAGAGCTTCAGTCAACTTTTGATTCCATTGCCTAGGAGCTTGTTTCAGACCATATAGGGACTTTGTTAGTCTACATACTTTCTCCCCCTGACCAACAAATCCCTGAGGTAGTTGCATATAAATCTCATCATCCAAATCACCTTGAAGAAAAGCATTGAATACATCTATCTGATGAATATGCCAATGCCTAGCTGCTGCAAAAGAAACAATGGTTCTGACTGTCACCATCTTAACAACAGGTGAGAAGGTCTCCGTTTAATCTATTCCTTCTTGTTGAGAATAACCTTTAGCCACTAGCCTTGCTTTGAGTCTCTCTATCTCTCCTGATGATTTGTATTTAACCTTATAAATCCATCTACACCCAATAGCCTTCTTCCCCTATGGCAGATCAGTAAGCTCCCAAGTATGATTACTTTCTAGTGCTTGAATTTCATGTTGCATGGCCTCTATCCATCTTTTATCTTGAACAATTTCTAGATAGGACTCAGGTTCCTTAACAACAGAAGTGGCTGCAATATAGCTTTGATATGTAGGGGAAAGATGATCATAACTCGTGTACTTTCCTAAAGAGTACATGACATCTTTGTTAACAGTCAAGGACACAATCTTTCATCCAAGTTGGTTTGAGTTTCTGTCTAGTAGATCTTCTATTAGTAGTAAGACTTGCAGACTCTTGATTCATCTCATTTCTACCATACCATCAGTTGGAACTTTTTCTACCTCATCAACAGAAGACAAAGTATGAGTCTCATGAGACACATTATCTTCATGAGACACAGTAGTGGAAGGACACCTGGGAATCACAGGATTTATACACTGTACATTACTACTTAGCATGTCTGAAATTTGCATAGGATCCACAAACACTCTTTCTTGTAATGAAGGCTCTATCTTTGTAAAAGGAAACACATCTTCTCTAAACACCACATCCCTACTTGTGAAGAATGATTTATCAGTTAGATCAAGAAGTAGATACCCCTTTTGTAACTCTGAATAACCCATAAGAACTGCTGGTCTTGATCTTGGCATCAACTTATCATGTTGTGTTAGAAGTTTAACAAAACACAAACATCCTAGAGTTTTGACATGAGATATTGATGGTTTACTACCATACAACCTTTCATAAGGAGTATTAAAATGTAGAACACTACTTGGTAACCTATTAATGATATATGCAGCAGTCAACATACACTGACCCCAATATCTGATAGGAATATGAGCTTGAAGTCTTAAAGCTCTGGTAACTTCAAGTAAGTGTCTATGCTTTCTCTCAGCAACCCCATTTTGCCGAGGAGTGTATGGACATGATCTTTGATGTAAGATTCCCAATTCTGTAAATAGCTTATGACATTCTGAGTTTACAAACTCAGTACCATTATCAGTCCTCAACACTTTAACCCTCTTTCCAAACTGAGTTTGAACATATTGCAGAAACATTCGAATGGAAACACACACAGCAGATTTATGTGATAGTAAAAACAGCCAAGTTACTCTTGAAAAATCATCCACAATTGTAAGAAAATACTTCTTGCCATCAACAGTAAATGTATTATAAGGACCCCAAAGATCAATATGAAGTAGCTCAAAACAAGCAGTACTTTTAATGCTACTATTAGGAAACACATTCCTTGTTTGTTTAGCAAATGGACATACAAGGCACTTAGAAATGCTACATGCACTTTGCTTATTCATTGAAAACATCCTTGCAAGCACTGTTGATGATACATGACCCAATCTTCTATACCATAACACCATGTCTGTCTCCTTGACATCATTAGCAGCAAATGCAGCCTCAACTTCCTTTTCTTGATCATTATACTGAGTAGTCAAATGCTTTATTAGCAAGTACAATCCTCCTTCCTCTTTACCAACTTCTTTCACCTTCCCACTGTAGAGTTCCTGGAAGACACAAAAATGAGGAAAAAAGGTAACAGAACACCCTAGTTCCTTAGTGATCTGACTTACTGATAACAAGTTATACTTGAAATCAGGTATGTGAAGCACATTTGATATAACACTCCTTGTTGATAGACTACAAGACCCAATGTGAGACACCTGAGTAGTAGTACCATTTGGTAGATAAACAGGCTTAAAGACTTCATGCACAGTGTTTTTAGTCAACATATTCAAACTAGACACCATATGGTTTGTTGCACCAGTATCTATAATCCACATATTACTATGTGCAGAAACAAAAGATGTTTTACCTGTATTGTTTGCACTATTACACATAAAAGTTGTAGGCTCAGACTTTTGTTGAATCATTTTTAGAATGTGATCATATTGATCCTTAATAAATGTACATCCTTGAAGCAACTGTTGAACCTCTTTCTCTACCGGACTCACTGTTCTGTTAACACTGAGAGTGGTAATCTCTGATGAAGATTGATACTGCTCAGATATATTTCCCCATCCCGGTGGAGGAACATTGGTGTTCATTTCATAAGTAAGATTTGCATGTGTTAATTGTGCCTGACTGTAGTTGTTACTACCAGTATTACCATATGCAGGAGAAGTTCCTTGCACTTTTCTTTTGGACTTAAAATCAGGAGGATAGCCTACAATCTTGTAACAAAATTCTTTGCTGTGACCCTTACATTTGTAAAAATCACATATCAACAATGTGTTTCTTTTCAATTTCTGACTTACATTGGAGCTGCTACTTGCTTTAGAATATAGAGCAACTGACTCCAATGCAGCTGAAATACTATTAACACCACTTACTACAGCCTTTTGACTCTCATCACCAACTATCATAGCATAGGCATAGTTAATTGATGGTAATGGATCCATCATCAAGATTTGACTCCTTGCTTGATGATAGGAGTCTTTTAAACCCATTAGAAACTGGTATAACTTCTGCCTATTCATATGAGCAACAAAGCCTTTGGATATTTCACAGTTACAACAAGGAGATGGCACCATCACCTCAAATTCATCCCACAAGCTTTTCAGCTTTGTATAATACACAGAAACAGAAACAGTACCCTGCTGTAGTGAAGTTATATCTTTGTGTAGACTATAAGTTCTAGAGCCATCTATTCTATCAAATCTTTCTTTTAGATTAGTCCAAACATCAAAAGCAGTAGAAGCAAATGCAATGCCACTTAGTTAACTCTTGGATACAGAATTCATTAACCATGACAAAACAATAGCATTCACTCTTTCCCATTGCCCCCATATTTCCTTACCAAACATCTTCTTTCTAGCAGTTTCATCAATCAAACCCATCTTATTTCTTCCTAGTAAAGCTATCTTAATAGACCGACTCCACAAAGTGTAATTCTCAACACCAAGCAACTGAAACGAGATAATACTCATTCCACTAACATCAGTAGGATTAAGAAACAAAGGATGGTTATAATCGATACCTTGACTCTGCCCAGAAATGACTTGTGAAGATCTGTTTTGGACTGAATCTTCATTTTCACCTTCAATTGCCATTTGAGATTTGAAAAACAATGATTCAGCAGTAATTCAACAAACTTGAACTTAAAGATCTTTTCAACAACACTTGAGAAACTTGTGAATCTGTGAATCAGTAATTGATTCTTTGATCTTGTGATTTCTCTAAAAAACAAAACTGTGAATCTATGAATCAACTGTGATTCTTTGATTCTGTGGATTCTCCAGCTTCATCAGTGTTTACTGAGAAGCAACCTGGCTCTGATACCATGTTCGTTAATGAAGGAAGCTTCATGACGTTAGGAAGAAGAAGAAAAATCAGTTAAGAAATAGCTAAGAAGAAGAAGAAGAAGCAGTTAAGAAGAAGGAAGAGTAGTATATTCTTGTATATGGTGTGTTTTTCATGTACAAAGAATGAGCTGTATATATAGCTCTTTAACATGCCCAACTATTAACAACTTTGTAACTAACTAATTGAAAAGTAGTTATAACTAACTTTCAGTAAAAAGACTATTCTACCCTTTCTATATTCTACAACTTTTCTATATTACAACATTTTGTGTTAAAAAAGATGAAGAGTAGGTTCTGGGTTAACTAAAAATTTGATGTTTTTGTGTTAAAAGATGATAGGTTCTATGTTAGCTGAAAAATTGATGTATTTGTGTCAGAAATGAAGAGTAGGTTCTCGGTTAGCTAAAAATTTGATGTTCTTGTGTTAAAAAGATGAAGAGTACTGTGTTAGCTAAAAAATGATTTTTTTGTGTTAGAAGATGAAGAGTAGGTTCTGGATATATATGCTTCAAATCCATTGTGTAAACCAAATGTTTAGAAGATGACCAGTAGCTAGCTTCTAGTTTCACAAATGAAGTCATTGTGTATTTCTTGTTATTTTGTTATGGTTGAACTAAGAAATATGAAATGTTAGACTTCATGATAATTGCTTTATTGTCATTTGTGTTCTGAAATCTATGTCTAATTCCATGACAATGCATTTACTTTTTTCCTTGTTACGATCGTATTAGGTTTTTTTGTTTTTGTTTTCCTGCTGATTGTATTTGTGTTCTTAAGATTGTATTGGTCTAATGTCATATGTAAACTGATTTGAATTTGGTTTTCTGCTGAGTGTATTTATATGGTAGGTAGATGTTTAGCCATTGCAAGAAACAACTGGAAATAAAGAGCCCCTTATGTGGATTCCTTTGTCTAAGAATAATAACATGATCTTATTCGATTTTTTTCGTGCTGATTGTATTATTCTAATGCCGTGGCACACATGAAAATTATCTAATTTGAATTGATTTTCTGCTAATTGTTTTCCTCTAAATGATGTATAAAGTGATATATGGTTAGGTAGATATTTAGTCAAGTTACACTTGCATGAAATCCATTCAAGAGATAACTATTGTTTGATGTTTATTTGGGATAATAATGAAACTTCTGTCCAGGGATGGATATCAAATCTATTAAAGATTTATTGGAGCAGATGTTGAACCAAGTTCAACATCAACATACTGGGGATTCCAAAGATGTATATGAAATGATAGGGAAGCTAGAGCAGATTAAATCATATCTTTTAACCGAAGGTAATAATCAAACTATGTTTATAATTTAATTTTTTTTTTGTCTAGGTACTTTTTTTTGCTGATCAAATTTTGATATATTTCTTTGATAAAGCAATGCATAGCAATGTATTTTCTGGATTTCCTTCCCTTCATTCACCTACACCTCAACAACCTT</genome_strand>
        <mrna_strand>CATTTCCCCTTGAGCATTCTCTTTCTCGTCTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGATATCAAATCTATTAAAGATTTATTGGAGCAGATGTTGAACCAAGTTCAACATCAACATACTGGGGATTCCAAAGATGTATATGAAATGATAGGGAAGCTAGAGCAGATTAAATCATATCTTTTAACCGAAG...........................................................................................CAATGCATAGCAATGTATTTTCTGGATTTCCTTCCCTTCATTCACCTACACCTCAACAACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320991" ref_strand="+" ref_description="SGN-E320991 [cTOB-13-D9]">
      <seq>aaactactcttccttcttcttcttaactgcttcttcttcttcttagctatttcttaactgatttttcttcttcttcctaacgtcatgaagcttccttcattaacgaacacaaaaacatcaaatttttagctaacccagtactcttcatcttttaaacacaaaaacatcaaatttttagctaacccagaacctactcttcatcttctaacacaaaaacatcaatttttcagctaacccagaacctatcatcttttttaacacaaaaacatcaaatttttagctaacccagaacctacaagtcatcttgtaacacgaaaacatcaaatttttagctaacccagaacctactagcttttttaacacaaaaacatcaaatttttaggtaacccagaacctactcttcattttctaatacaaaaacatcaaatttttagctaacccagaaactactcttcatctttttaacacaaaaacgtcgattatttagctaagaaatgagaaaaaaaaaaggaattgaacttaccagacgagaaagagaatgctcaaggggaaatggctacttctccaactaaagcaagaccttcccaagntgctattatatatatatatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="78036" stop="79246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78336" g_stop="78946" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E320991" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78336" e_stop="78946"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTACTCTTCCTTCTTCTTCTTAACTGCTTCTTCTTCTTCTTAGCTATTTCTTAACTGATTTTTCTTCTTCTTCCTAACGTCATGAAGCTTCCTTCATTAACGAACACAAAAACATCAAATTTTTAGCTAACCCAGTACTCTTCATCTTTTAAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACTCTTCATCTTCTAACACAAAAACATCAATTTTTCAGCTAACCCAGAACCTATCATCTTTTTTAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACAAGTCATCTTGTAACACGAAAACATCAAATTTTTAGCTAACCCAGAACCTACTAGCTTTTTTAACACAAAAACATCAAATTTTTAGGTAACCCAGAACCTACTCTTCATTTTCTAATACAAAAACATCAAATTTTTAGCTAACCCAGAAACTACTCTTCATCTTTTTAACACAAAAACGTCGATTATTTAGCTAAGAAATGAG-AAAAAAAAAGGAATTGAACTTACCAGACGAGAAAGAGAATGCTCAAGGGGAAATGGCTACTTCTCCAACTAAAGCAAGACCTTCCCAAGTTTCTATTATATATATATATATC</genome_strand>
        <mrna_strand>AAACTACTCTTCCTTCTTCTTCTTAACTGCTTCTTCTTCTTCTTAGCTATTTCTTAACTGATTTTTCTTCTTCTTCCTAACGTCATGAAGCTTCCTTCATTAACGAACACAAAAACATCAAATTTTTAGCTAACCCAGTACTCTTCATCTTTTAAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACTCTTCATCTTCTAACACAAAAACATCAATTTTTCAGCTAACCCAGAACCTATCATCTTTTTTAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACAAGTCATCTTGTAACACGAAAACATCAAATTTTTAGCTAACCCAGAACCTACTAGCTTTTTTAACACAAAAACATCAAATTTTTAGGTAACCCAGAACCTACTCTTCATTTTCTAATACAAAAACATCAAATTTTTAGCTAACCCAGAAACTACTCTTCATCTTTTTAACACAAAAACGTCGATTATTTAGCTAAGAAATGAGAAAAAAAAAAGGAATTGAACTTACCAGACGAGAAAGAGAATGCTCAAGGGGAAATGGCTACTTCTCCAACTAAAGCAAGACCTTCCCAAGNTGCTATTATATATATATATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730591" ref_strand="+" ref_description="SGN-E730591 [LA24CD06]">
      <seq>ctattgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatgccaagaaatgagcattcttaattccagtacatgctgggtattgtatgttcaccccataggtcaatgtagaaggcacatgtattatacacttgagcaggcttcttttgggtctttgtagccagtaaaaatgttttaaacaatttgattttatgtactaatcctaagaaaatatgtgtttggttgtcggttttctttcgtcacaatgggaagtgaatcaattatttgttttcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84409" stop="79195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84110" g_stop="84003" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="281" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="366" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="455" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79492" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="965" r_length="510" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E730591" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>965</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84110" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGTTTTTCTTTCGTCACAATGTGAGTTGAATCAAATATTTGTTTTCATACATTAAGTA</genome_strand>
        <mrna_strand>CTATTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGGTTTTCTTTCGTCACAATGGGAAGTGAATCAATTATTTGTTTTCATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745127" ref_strand="+" ref_description="SGN-E745127 [GI|47106001]">
      <seq>ggtagctccaaactcttcgaattttgtggcgcagattcagaaatcacagtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatggtgagcataatgacagttggaattgtgatctgtttctcttgttcattatttatgtactaacatggctgttctagcttaattgttcaaaacgttctgcttcattgtccttattttctctatccatctcctgaagtatgtgatgatcctttatcaacttgttatgtttatgtgatatcctttgtcctatcagaaaaagctcttactatgtctactgtacaatagttctctacatgtatctttttagcttggcctgccctgatttctggttttatagtctgtccataaatcatgtattccttcaagatgtggaaacatattgctgactccacactttgcttaaaaccattttataatttttgataaatacctgcacttcattaaaaattataccaagttatattactaaaactaatgctaatacagtatttgtcaaaaaggtatgccaaacttttttttacagaatgtggtaatcctcaccctaaccaccctgctcaggagccaaatagtgccttttcctactttgcctcaatggtgactcgtactcgcgattgcatggttggaggtggaggcccttctcactaggctatccatcccttgtctgccttggttaagattttttgttcgatcttctaattttttttttcctgattatgcttgtggtggtataaaattgaaatatagctgcctgcctgaacattgatagactatgaccttaagtcaagccatgaattattattcttataaggaccatggaaacatcacacaaactaacatgataccatctgggcccatagggttcagtatagtggtaaaagtgcttcatgttgtatgtaggttatgggcatgtcacattcgaactcttgttgaggcaaaagcctagtatttaagtggtgaagaggagactggatgtcccattatccctcagagtatcaaagcatgcaccactggaactcggggttcagttataaataaaataacaccattataagaccttagattggatacatgtatgcatgtgctttctgtgaattgtctttctgtatcagtaggaatgtgcaagttcgatcttctctggagtcgggacatctacaagctctacatagctagccaatgaagttatggtctaaagcccacaacaatcagcttaacctttacaagcaaaagaaactgtgtaatagggtaaaaagagtatcagattaattcgatatgacctgaagtttatcaacaattaaatgggaagggttagatggaggttgctgaaataatcatacagagtaaagctctgtatctgttactcatttttgtctaaatccttatcaccatatgctttttaggaagaaactcctcagctttgtaacagtgggacttttttagtttaattttctctggggctaaatgtttgtattaattgcttaaattggcttgctgtcccaaaaaaatttgggtcgctgttgttcattttacatggtgtagaatagtagaaaggtcagtgactaagcttttgatataatgcagcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaaggtgacttcattctgttgtatattattcacccgctccatttcctcttaagcttctcactggttccaaagtgcatgtcatggataatcatctatggaaatgttaaaaagtgaatcttatagtccaagaggagcactccttgctgaagctaagagcattcaaacaaactaaataaacattaattactattataatttctgtttacctttaagattttacttctggcgaacttcttttgttacagctcagctaaacggaatattttatagttcaactgaagtgtcttaacagaatagtactagatgcgtaatcctcgagtagcacctgtcatattgattgtgatcttgtctactacatccacttacaattttctcatcactgtgggtgcctaatgtatctggactagtgatggaaaattttgttaggagtattgtaatcatccgcatgcatgcatgcatttcattttgtcacaatcctcgcagtttccaaagcttgatagtgttgcagttttgatgaaccacgtgtgtatttgcattgcatgtataacttttaaaatcaatttgtcagttattttgtcgacttctagtgatttggactaacttgacttactaatatgtagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatgccaagaaatgagcattcttaattccagtacatgctgggtattgtatgttcaccccataggtcaatgtagaaggcacatgtattatagacttgagcaggcttcttttgggtctttgtagcccgtaaaaatgttttaaacaatttgattttatgtactaatcctaagaaaatatgtgtttggttgtcgtttttctttcgtcacaatgtgagttgaatcaaatatttgttttcataagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84469" stop="79195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84170" g_stop="84003" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="80331" g_length="2483"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="2646" r_length="2478" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80001" g_stop="79500" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="2647" r_stop="3148" r_length="502" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="3150" polyA_stop="3165"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E745127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>3153</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84170" e_stop="84003"/>
          <exon e_start="82813" e_stop="80331"/>
          <exon e_start="80001" e_stop="79500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAA-TTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGTTTTTCTTTCGTCACAATGTGAGTTGAATCAAATATTTGTTTTCATAC</genome_strand>
        <mrna_strand>GGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGT---GG---AGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCCACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGGTAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGCGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTAATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATAGACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCCGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGTTTTTCTTTCGTCACAATGTGAGTTGAATCAAATATTTGTTTTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E251272" ref_strand="+" ref_description="SGN-E251272 [cLEG-10-H17]">
      <seq>aaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatgccaagaaatgagcattcttaattccagtacatgctgggtattgtatgttcaccccataggtcaatgtagaaggcacatgtattatacacttgagcaggcttcttttgggtctttgtagccagtaaaaatgttttaaacaatttgattttatgtactaatcctaagaaaatatgtgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="80708" stop="79256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80408" g_stop="80331" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80001" g_stop="79556" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="524" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E251272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80408" e_stop="80331"/>
          <exon e_start="80001" e_stop="79556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTT</genome_strand>
        <mrna_strand>AAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689328" ref_strand="+" ref_description="SGN-E689328 [t3_tus_84_C06]">
      <seq>agtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacnaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatgccaagaaatgagcattcttaattccagtacatgctgggtattgtatgttcaccccataggtcaatgtagaaggcacatgtattatacacttgagcaggcttctttttgggtctttgtagcccgtaaaaatggtttaaacatttggattttttgtactaatccctaagaaaattaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84423" stop="79264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84123" g_stop="84003" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="294" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="379" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="468" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79564" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="908" r_length="440" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="910" polyA_stop="922"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E689328" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84123" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTT-GGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAAT-CCTAAGAAAAT</genome_strand>
        <mrna_strand>AGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACNAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTTGGGTCTTTGTAGCCCGTAAAAATGGTTTAAACATTTGGATTTTTTGTACTAATCCCTAAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703036" ref_strand="+" ref_description="SGN-E703036 [FA20BE08]">
      <seq>attcagaaatcacagtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatgccaagaaatgagcattcttaattccagtacatgctgggtattgtatgttcaccccataggtcaatgtagaaggcacatgtattatacacttgagcaggcttcttttgggtctttgtagccagtaaaatgttttaaacaatttgatttatgtactaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84436" stop="79272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84136" g_stop="84003" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="307" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="392" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="481" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79572" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="909" r_length="428" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E703036" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>911</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84136" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCT</genome_strand>
        <mrna_strand>ATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGT-AAAATGTTTTAAACAATTTGA-TTTATGTACTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E624732" ref_strand="+" ref_description="SGN-E624732 [GI|169588]">
      <seq>agttgctctggtcggtaatgatgcttacaggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcacagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtcacagctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactccgcaaactggtgcagctaatggcccaagaactgacagtaacggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcagaaccaaataatattctctttatacagaatctgccccacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaagcaaagccaggtattgcattcgtggaatttgatgacgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcaccccccaaaatcccatggcaatcacctatgccaagaaatgagcattcttaattctagtgcatgctgggggttaactgttcaccccataggtcagatgaggaagatgtagaaggcacatgtattatacacttgagctggcttctttttaagccttggaagtcttttgggttttgttagccaattaaaaatgttttaaacaatttgattttatgtactagtgctgctgaatcctaagaaaataggtgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84392" stop="79272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84095" g_stop="84003" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="266" r_length="173" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="351" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="434" r_length="83" r_score="0.921"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79613" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="834" r_length="400" r_score="0.882"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E624732" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>829</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E624732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84095" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTC---------A-ATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTC-TTTTGGGTCTTTGTAGCCA</genome_strand>
        <mrna_strand>AGTTGCTCTGGTCGGTAATGATGCTTACAGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCACAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTCACAGCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAA---CTCCGCAAACTGGTGCAGCTAATGGCCCAAGAACTGACAGTAA---CGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCAGAACCAAATAATATTCTCTTTATACAGAATCTGCCCCACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCATTCGTGGAATTTGATGACGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACCCCCCAAAATCCCATGGCAATCACCTATGCCAAGAAATGAGCATTCTTAATTCTAGTGCATGCTGGGGGTTAACTGTTCACCCCATAGGTCAGATGAGGAAGATGTAGAAGGCACATGTATTATACACTTGAGCTGGCTTCTTTTTAAGCCTTGGAAGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728462" ref_strand="+" ref_description="SGN-E728462 [LA17DF02]">
      <seq>ttcgaattttgtggcgcagattcagaaatcacagtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaagttcgaatgattgaaagcaagccaggtattccgtttgtggaatttgacgatgatgtccagtcttcagtcgccatgcaggcccttcaaggcttcaaaatcacaccccagaatcccatggcaattacctatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84455" stop="79434"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84155" g_stop="84003" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="326" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="411" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="500" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79734" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="768" r_length="268" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E728462" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84155" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATG</genome_strand>
        <mrna_strand>TTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAAGCAAGCCAGGTATTCCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E332733" ref_strand="+" ref_description="SGN-E332733 [cTOD-18-E6]">
      <seq>gtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctggctttagagaaagtcgaatgattgaagcaaagccaggtattgcgtttgtggaaattgacgatgatgtccagtcttcagtcgccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84422" stop="79489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84122" g_stop="84003" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="293" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="378" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="467" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79789" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="680" r_length="213" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E332733" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84122" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATG</genome_strand>
        <mrna_strand>GTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAAGTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAAATTGACGATGATGTCCAGTCTTCAGTCGCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288356" ref_strand="+" ref_description="SGN-E288356 [cLES-16-E21]">
      <seq>tcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttgcggaaccaaataatattctctttatacagaatctgccctacgagacaacaagtatgatgcttgaagtgctcttcaaacagtatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84394" stop="79575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84094" g_stop="84003" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="265" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="350" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="439" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79875" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="566" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E288356" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84094" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTG</genome_strand>
        <mrna_strand>TCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443357" ref_strand="+" ref_description="SGN-E443357 [cSTA-37-M14]">
      <seq>aaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacagctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactccgcaaactggtgcagctaatggcccaagagctgacagtaacggtggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaagatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84347" stop="79662"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84047" g_stop="84003" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="218" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="303" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="389" r_length="86" r_score="0.933"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79962" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="429" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E443357" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84047" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTG</genome_strand>
        <mrna_strand>AAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACAGCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAA---CTCCGCAAACTGGTGCAGCTAATGGCCCAAGAGCTGACAGTAACGGTGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E289522" ref_strand="+" ref_description="SGN-E289522 [cLET-3-B9]">
      <seq>aactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagatgtctctgtattgctcggttttgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacagtaacggcggaggtccagctgctgcatctcgacaaggaaagccaagtgctcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84346" stop="79668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84046" g_stop="84003" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="217" r_length="173" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="391" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="80001" g_stop="79968" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="392" r_stop="425" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E289522" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84046" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
          <exon e_start="80001" e_stop="79968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCTGTAAGTTTGTTGCAACTTCATTATTTTTTTCAAGTATTGCTTCTTTTATTTGTTTTAGTTGTACAAAAACTTGCCTCTCCATTGTCCATAATTGTGTGATTGATAGTCCATATGGAACTTCAAATATAGTATGACCGCCTTTGTAATGACACCAAAGTAATGCGCTCACAGCCTGGTCATACTTACACCCATAGCTCCGAATGACTAGCAGCTTGACTTCATGACAACTTCTTATGTGTTACCGTTGATCTCTTTTTGTGAATATTATTATCTGAAATATATTCATCTATTATCTTCATTAATTTCATATTGTTGAACAACTTTTGCAGGCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAG</genome_strand>
        <mrna_strand>AACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGATGTCTCTGTATTGCTCGGTTTTGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT.........................................................................................................................................................................................................................................................................................................................................GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566248" ref_strand="+" ref_description="SGN-E566248 [4687]">
      <seq>gaatatacatacagatagagaaaagctgctctgctcggtaatgatgcttacaggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacagctgccagtaatgctgtgaggcaaatgcgaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacacgatgaaaaagtggagaaaaggaaacgtactgaagaaactccgcaaactggtgcaagctaatggcccaagagctgacagtaacggcggaagtccagcttgctgcatctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84393" stop="80031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84120" g_stop="84003" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="289" r_length="173" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="0.98"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="374" r_length="85" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80331" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="461" r_length="87" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E566248" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84120" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGC-AGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT</genome_strand>
        <mrna_strand>GAATATACATACAGATAGAGAAAAGC--TGCTCTGCTCGGTAATGATGCTTACAGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACAGCTGCCAGTAATGCTGTGAGGCAAATGCGAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACACGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAA---CTCCGCAAACTGGTGCAAGCTAATGGCCCAAGAGCTGACAGTAACGGCGGAAGTCCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439221" ref_strand="+" ref_description="SGN-E439221 [cSTA-11-I12]">
      <seq>cgagggagaagagcaagtgaatatacatacagatagagaaaagctgctctgctcggtaatgatgcttacaggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacagctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactccgcaaactggtgcagctaatggcccaagagctgacagtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84393" stop="80046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84138" g_stop="84003" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.838"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="307" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="392" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80346" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="463" r_length="71" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E439221" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84138" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAAC</genome_strand>
        <mrna_strand>CGAGGGAGAAGAGCAAGTGAATATACATACAGATAGAGAAAAG--CTGCTCTGCTCGGTAATGATGCTTACAGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACAGCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAA---CTCCGCAAACTGGTGCAGCTAATGGCCCAAGAGCTGACAGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E336274" ref_strand="+" ref_description="SGN-E336274 [cTOE-10-N14]">
      <seq>ttgtagctccaaactcttcgaattttgtggcgcagattcagaaatcacagtgaatatacagatagtgagaaagttgctcttctcttctcggtaatgatgcttacgggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacatctgccagtaatgctgtgaggcaaatgcaaaacttcccgttttacgacaaaccaatgcggatacaatatgctaaatcaaagtcagattgtattgctaaggcagaggggacctatgacaagaaaaagaaacaagatgaaaaagtggagaaaaggaaacgtactgaagaaactcctccgcaaactggtgcagctaatggctcaagaactgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84471" stop="80050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84171" g_stop="84003" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="342" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.421" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="427" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80350" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="497" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E336274" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84171" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAG</genome_strand>
        <mrna_strand>TTGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E566158" ref_strand="+" ref_description="SGN-E566158 [4597]">
      <seq>gaatatacatacagatagagaaaagctgctctgctcggtaatgatgcttacaggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatatagtagctcttaagactcccaaacttagaggacaatcatgggttgtgtttagtgaagtaacagctgccagtaatgctgtgaggcaaaatgcaaaacttcccgttttacgacaaaccaaatgcggataccattatgctcaagtcaacagtcacgattgtattgctaaggcagaggggacctatgacgagaaaaagaacaagatgaaagagtggagaaaaggaaacggtactgaagaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84393" stop="80091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84120" g_stop="84003" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82641" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="291" r_length="175" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520">
            <donor d_prob="0.902" d_score="0.92"/>
            <acceptor a_prob="0.421" a_score="0.78"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81120" g_stop="81036" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="379" r_length="88" r_score="0.847"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616">
            <donor d_prob="0.987" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80419" g_stop="80391" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="409" r_length="30" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E566158" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E566158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84120" e_stop="84003"/>
          <exon e_start="82813" e_stop="82641"/>
          <exon e_start="81120" e_stop="81036"/>
          <exon e_start="80419" e_stop="80391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGC-AAATGCAAAACTTCCCGTTTTACGACAAACC-AATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATA-CAATATGCT-AAATCAA-AGTCA-GATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAAC-GTACTGAAGAAACT</genome_strand>
        <mrna_strand>GAATATACATACAGATAGAGAAAAGC--TGCTCTGCTCGGTAATGATGCTTACAGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACAGCTGCCAGTAATGCTGTGAGGCAAAATGCAAAACTTCCCGTTTTACGACAAACCAAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATACCATTATGCTCAAGTCAACAGTCACGATTGTATTGCTAAGGCAGAGGGGACCTATGACGAGAAAAAG-AACAAGATGAAAGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGAAAAGGAAACGGTACTGAAGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313600" ref_strand="+" ref_description="SGN-E313600 [cTOA-12-C5]">
      <seq>ctcggtaatgatgcggactggagacataccaccgaatcaaactatttacattaagaacttaaacgagaaggtcaagaaagaagagctaaagaggtctctgtattgcttgttctcgcagtatgggaggattgtcgatataggagctcttaagactcccaaacttataggacaatcatgggttgtgtttaatgaagtaacatctgccagtaatgctgtgaggcaaatgcaaggcttcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="84385" stop="82359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84085" g_stop="84003" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82813" g_stop="82659" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="238" r_length="155" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E313600" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84085" e_stop="84003"/>
          <exon e_start="82813" e_stop="82659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAGGTAACTTTTTTTTTTTGTTTTTGAAGATTTAAGCTAGGGTTTTAGCATAAATTCGAATCAGGAATTGTTAAGGCTGCAGAATTTCAGCTGTTTATGATCTTTTTATACATTTACGTGTTGTTGAATAGATGTAAATGGAAGGAAAATACCATATAAAGCCGTGGTGTATGAGTACTATATGGAGTTGTAAGTTGGCGAGAAGGTTTTAGAGAAGTCATAATATAAGGGTATCTAGAATATGTATGTTTATACCGGGTAAGGTAAAGGATAGAGTTTCAAGTGACTTGTAAGCGCAGATTGTTTTCCGTGAATGTTGGGTCAAATTCTGTAAGCCATGTACCTGAGAGGAGCTTAGTAAAGAAGAAGGGGTTTCTGTTGTTGGCGCCCTATTTTAGTTTAGTGGAGCTGGAGTTTGAGCAGTAATGGTGGTTTTTCCCAGTCCCATTCACCGTCTCTGTCTAAAGAATACAAGCCCTTTTGGGTGAATTGAATTCTGCAAAGGTAGGGGGTGTGATTAGTGTGAGGTTTTTAGAACCCCTATTTTCTATAAGAGATAAATTTTAGAATTAGAATGTTCCCGAATGGTGTTGGACTTCATTGGCGGACACCAACTAATTTGGGGATTGAACAGGGAAAATACCCTTCGATTTGATCAAGTTTTCTGGTGATCATTTCCTTCCTCTTTTTGTGCATTGTTGCCTCAATATCTATATTATTATCTTTGAATTGAGTGTTAAACTTGGCATGAAAAGAAATGTACTTATCAAGGAGAAATCATTAAGATTTGCTTTGTTATTGTTCTATGAAGTACCAAAACTTATGACTCTTATGCAACACTGACTTGAGAAAAGGTATTCTTATTACAACAGAGTTTTGCAATAGGACCCAATTATTGGATTGTCTATTTTCTTTTGCTCGTTTGTGCTTTCATATGCTTTTTTCTGTTTGCTTATGGTGCTCGTGGAGTTTTATTTTTATGTGTACTAGCAATGATGCCATTTTGAATTGTTGCTGTTATCTAATTTTGGAAAATGCCAAGCATACTCTGGCTTGTCTTTTGTATATGAGAAATAAATGTTGTATATAATTATGAACTCTTATAGTTTATAATGGGTTTGGCAACAGCTGTTTGCAGGAGGATTAGTGTATGCCCTTTGCTATATGGTAATGGTTTTTTCTTGTTTTGCAGAGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCG</genome_strand>
        <mrna_strand>CTCGGTAATGATGCGGACTGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGGAGCTCTTAAGACTCCCAAACTTATAGGACAATCATGGGTTGTGTTTAATGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAGGCTTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442666" ref_strand="+" ref_description="SGN-E442666 [cSTA-34-O8]">
      <seq>atttgccggctaaaacccttgagttccaaaaccctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacatccgtataccggcagcaatctcagcatcttccaagctctcttcttccagaaccttcgcgatgagcacacacccgaagaaacccaacttcagacccgatatcaaacacgaaaatgctgctgtaggagccaaagctgctgaaacgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85558" stop="86880"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85858" g_stop="86254" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86580" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="488" r_length="91" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E442666" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E442666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85858" e_stop="86254"/>
          <exon e_start="86490" e_stop="86580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCGCCGGCTAAAACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATA</genome_strand>
        <mrna_strand>ATTTGCCGGCTAAAACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATCCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTTCCAGAACCTTCGCGATGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATATCAAACACGAAAATGCTGCTGTAGGAGCCAAAGCTGCTGAAACGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E468192" ref_strand="+" ref_description="SGN-E468192 [cSTB-2-L2]">
      <seq>aacccttgagttccaaaaccctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacattcgtataccggcagcaatctcagcatcttccaagctctcttctcccagaaccttcgcgacgagcacacacccgaagaaacccaacttcagacccgatgtcaaacacgaaaatgctgctgcaggagccaaagctgctgaatcgctcaataaggatcttcgtgcacgccctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagattcatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85571" stop="88573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85871" g_stop="86254" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="548" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88273" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="563" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E468192" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E468192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85871" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAA</genome_strand>
        <mrna_strand>AACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATTCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTCCCAGAACCTTCGCGACGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATGTCAAACACGAAAATGCTGCTGCAGGAGCCAAAGCTGCTGAATCGCTCAATAAGGATCTTCGTGCACGCCCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATTCATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E582858" ref_strand="+" ref_description="SGN-E582858 [8491]">
      <seq>ttgagttccaaaaccctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacatccgtataccggcagcaatctcagcatcttccaagctctcttcttccagaaccttcgcgatgagcacacacccgaagaaacccaacttcagacccgatatcaaacacgaaaatgctgctgtaggagccaaagctgctgaaacgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctacttcgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattaggatgggcctgtgagttctggtaagagtattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85576" stop="88618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85876" g_stop="86254" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="543" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88318" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="604" r_length="61" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E582858" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E582858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85876" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTA-GATGGGCCTGTGAGTTCTGGTAAGAGTATTG</genome_strand>
        <mrna_strand>TTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATCCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTTCCAGAACCTTCGCGATGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATATCAAACACGAAAATGCTGCTGTAGGAGCCAAAGCTGCTGAAACGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTCGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGGATGGGCCTGTGAGTTCTGGTAAGAGTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452981" ref_strand="+" ref_description="SGN-E452981 [cSTS-18-D15]">
      <seq>caaaaccctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacattcgtataccggcagcaatctcagcatcttccaagctctcttctcccagaaccttcgcgacgagcacacacccgaagaaacccaacttcagacccgatgtcaaacacgaaaatgctgctgcaggagccaaagctgctgaatcgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagattcatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85584" stop="88596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85884" g_stop="86254" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="535" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88296" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="573" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E452981" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85884" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88296"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCT</genome_strand>
        <mrna_strand>CAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATTCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTCCCAGAACCTTCGCGACGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATGTCAAACACGAAAATGCTGCTGCAGGAGCCAAAGCTGCTGAATCGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATTCATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371002" ref_strand="+" ref_description="SGN-E371002 [TUS-29-J19]">
      <seq>accctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccatcccaccaccggagatatccgtatacaggcagcaatctcagcatcttctaaggtctcttcttccagaaccttcgcgacaagcacacacccgaagaaacccaacttcagaccggatataaaacacgaaaatgctgcagcaggtgccaaagctgctgaaacgctcaacaaggatcttcgtgcacgctttctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgttcactattcacttcggcagcttctatttctgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggatagagttttgccggagggattaccagtggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttttggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttaattgggcacgtgatgaaggttggctagttctttatgtttctaaaggccgagaatggactcatggaggctttttctataaaaatcctaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85588" stop="88728"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85888" g_stop="86254" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="531" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88428" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="701" r_length="170" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E371002" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85888" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACA</genome_strand>
        <mrna_strand>ACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTTCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280563" ref_strand="+" ref_description="SGN-E280563 [cLER-1-K6]">
      <seq>accctgaagaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccatcccaccaccggagatatccgtatacaggcagcaatctcagcatcttctaaggtctcttcttccagaaccttcgcgacaagcacacacccgaagaaacccaacttcagaccggatataaaacacgaaaatgctgcagcaggtgccaaagctgctgaaacgctcaacaaggatcttcgtgcacgctttctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgttcactattcacttcggcagcttctatttctgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggatagagttttgccggagggattaccagtggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttttggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttaattgggcacgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85588" stop="88650"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85888" g_stop="86254" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="531" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88350" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="623" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E280563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85888" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88350"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGAT</genome_strand>
        <mrna_strand>ACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E448790" ref_strand="+" ref_description="SGN-E448790 [cSTS-4-O22]">
      <seq>gaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacattcgtataccggcagcaatctcagcatcttccaagctctcttctcccagaaccttcgcgacgagcacacacccgaagaaacccaacttcagacccgatgtcaaacacgaaaatgctgctgcaggagccaaagctgctgaatcgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagattcatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgttagttctggtaagagtattgcccttgcaatgcttgttcattgggcacgtgatgaaggttggctagttctttatgttcctaaaggccgagaatggactcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85596" stop="88699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85896" g_stop="86254" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="523" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88399" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="664" r_length="141" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E448790" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E448790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85896" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATG</genome_strand>
        <mrna_strand>GAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATTCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTCCCAGAACCTTCGCGACGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATGTCAAACACGAAAATGCTGCTGCAGGAGCCAAAGCTGCTGAATCGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATTCATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTTAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTCATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476519" ref_strand="+" ref_description="SGN-E476519 [cSTB-45-M3]">
      <seq>gaaatgctccggtcaatactccgatcagccgctacggcggcgaaatcccaccccaccaccggagacattcgtataccggcagcaatctcagcatcttccaagctctcttctcccagaaccttcgcgacgagcacacacccgaagaaacccaacttcagacccgatgtcaaacacgaaaatgctgctgcaggagccaaagctgctgaatcgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagattcatgtacttacatgaaattcangagggaagagctggagagagttttgccggagggattaccaatggggatgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85596" stop="86841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85896" g_stop="86254" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="359" r_length="359" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86541" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="411" r_length="52" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E476519" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85896" e_stop="86254"/>
          <exon e_start="86490" e_stop="86541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTT</genome_strand>
        <mrna_strand>GAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCACCCCACCACCGGAGACATTCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTCCCAGAACCTTCGCGACGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATGTCAAACACGAAAATGCTGCTGCAGGAGCCAAAGCTGCTGAATCGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATTCATGTACTTACATGAAATTCAN...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450326" ref_strand="+" ref_description="SGN-E450326 [cSTS-9-E5]">
      <seq>cgaaatcccaccccaccaccggagacattcgtataccggcagcaatctcagcatcttccaagctctcttctcccagaaccttcgcgacgagcacacacccgaagaaacccaacttcagacccgatgtcaaacacgaaaatgctgctgcaggagccaaagctgctgaatcgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagattcatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttggtgatcctactttgcaatctaatactaaaggtctcaaagctcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85636" stop="88573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85936" g_stop="86254" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="483" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88273" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="498" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E450326" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85936" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88273"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAA</genome_strand>
        <mrna_strand>CGAAATCCCACCCCACCACCGGAGACATTCGTATACCGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTCCCAGAACCTTCGCGACGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATGTCAAACACGAAAATGCTGCTGCAGGAGCCAAAGCTGCTGAATCGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATTCATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGGTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E561204" ref_strand="+" ref_description="SGN-E561204 [17159]">
      <seq>gggcagcaatctcagcatcttccaagctctcttcttccagaaaccttcgcgacgagcacacacccgaagaagcccaacttcagaccggatataaaacacgaaaatgctgcagcaggagccaaagctgctgaaacgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattctcgtccgcaacttctatttccgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggagagagttttgccagagggattaccagtggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttcattgggcacgtgatgaaggttggcctagttctttatgttcctaaaaggccgagaatggactcatggaggctttttctataaaaatcctaaaacaggaattatgggatactcctgtgcaagcagcaaatgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85673" stop="88766"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85972" g_stop="86254" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="448" r_length="164" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88466" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="659" r_length="211" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E561204" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E561204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85972" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAG-AACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGG-CTAGTTCTTTATGTTCCT-AAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGG-ATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCT</genome_strand>
        <mrna_strand>GGGCAGCAATCTCAGCATCTTCCAAGCTCTCTTCTTCCAGAAACCTTCGCGACGAGCACACACCCGAAGAAGCCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGAGCCAAAGCTGCTGAAACGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCTCGTCCGCAACTTCTATTTCCGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCAGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTCATTGGGCACGTGATGAAGGTTGGCCTAGTTCTTTATGTTCCTAAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGAATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419508" ref_strand="+" ref_description="SGN-E419508 [STM-29-B6]">
      <seq>cccgcaatctcagcatcttccagctctcttcttcagaaccttcgcgatgagcacacacccgaagaaacccaacttcagacccgatatcaaacacgaaaatgctgctgtaggagccaaagctgctgaaacgctcaataaggatcttcgtgcacgcgctctcaaagaagacgagaaggataaatcactggatataggtccagatggtcgtccactattcacttccgcaacttctatttctgagcttaccaaaaaagatacatgtacttacatgaaattcaggagggaagagctggagagagttttgccggagggattaccaatggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttctggatcttcgagataattttagaatggttgttgatcctacttcgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttcattgggcacgtgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="85675" stop="88652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85974" g_stop="86254" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86490" g_stop="86653" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="443" r_length="164" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88259" g_stop="88352" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="537" r_length="94" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E419508" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419508" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85974" e_stop="86254"/>
          <exon e_start="86490" e_stop="86653"/>
          <exon e_start="88259" e_stop="88352"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAGGTACATCTTTCGAGTAGTGAATGTACCAATTGCCTTTAGCTTGAACTGTATCTTAGGAAAATGTTTTTGATCGGCTCAAACTATATATTGGAGTGAAAAATATGCTTATACTTAACCTGTGCAAATTGTAACAAAGCTTTAGTGGGTGTAGTGTTGTCTCTTACACGTGGAATTAAAGTTTTGGATTTACTTGCTAAGGTGGTTTGTGTCTGTACTCATGAAATGTTTGTTATAGGAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGA</genome_strand>
        <mrna_strand>CCCGCAATCTCAGCATCTTC-CAGCTCTCTTCTTC-AGAACCTTCGCGATGAGCACACACCCGAAGAAACCCAACTTCAGACCCGATATCAAACACGAAAATGCTGCTGTAGGAGCCAAAGCTGCTGAAACGCTCAATAAGGATCTTCGTGCACGCGCTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTCCACTATTCACTTCCGCAACTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG...........................................................................................................................................................................................................................................GAGGGAAGAGCTGGAGAGAGTTTTGCCGGAGGGATTACCAATGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTCTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTCGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTCATTGGGCACGTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703929" ref_strand="+" ref_description="SGN-E703929 [FA22DE04]">
      <seq>gctggatagagttttgccggagggattaccagtggggatgcttaaggaattcggtgactctatgagagatgcattgctaatacgccagagttttttggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttaattgggcacgtgatgaaggttggctagttctttatgttcctaaaggccgagaatggactcatggaggctttttctataaaaatcctaaaacaggattatgggatactcctgtgcaagcagcaaatgttctccaggatttcttgaagtataataaggatcacctccaaaagataccctgcaaaatttttgaacctattccattgggagagggagctggtgttggatggatgaagggtgctgatgtggtacaaataccagaagattatactcttcttgacctggttcagatcgggcttaattcgactcacgcggctgttggggtgctagttcgtttgagggaagaattatcccttgtcaaggacgtgcctgttcttattgccgttgatcaatacaacagttggttcacattcagcgagtatgaggagccagtaactgttcgttcttgccgacctattcatgctagagaacttgcaactgtgaatgcatttaggtccatgattcatgancatatgatggtgggtgctttctcgcattcaactgctgtagggaagctacgcaaagacttaccagatgttcctgcagatgctcgcgtcaatttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86199" stop="91223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86499" g_stop="86653" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88259" g_stop="88470" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="367" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88471" i_stop="89203" i_length="733">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89204" g_stop="89458" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="622" r_length="255" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89459" i_stop="89596" i_length="138">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89597" g_stop="89683" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="709" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89684" i_stop="90799" i_length="1116">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90800" g_stop="90923" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="833" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E703929" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E703929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86499" e_stop="86653"/>
          <exon e_start="88259" e_stop="88470"/>
          <exon e_start="89204" e_stop="89458"/>
          <exon e_start="89597" e_stop="89683"/>
          <exon e_start="90800" e_stop="90923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAGGCAAGAAATTGTACTTATTCTAATATATGAAACATAGTTTGACTAGTTAAATTTCATTTGGTAATTGATATTGTCAGCAAAGATAGGGTGGACCTTAGATTTGTGTACATCTTATCTCCCCAGACACTACTTGTGATTACCTTGGGTATGTTGTTGTTGTTAATTGATACTGTAATACATTTTTGTCTTCTGTAACTGAATGAACCCAGCTTCTCTTTACTTATTGTTTCAAATATTATATAATTTATGCAGAAACAGTTTTGCTCACCAGGATGTGAGAAATATATCTGCTAGTAGGATATACTCGGAAATCGTCTAACTTGGCTCTGCTATGTATACCTAGTGGATCTTCATACACTGCTTTAGAAAAAAAGAATCTGAAACTGTTCTTCAATGTCATTTAACAAATATGGATCACCATTTCTGCATGTTTTCCCCGTGACTTCACTATTACTCTATCTCCTCCATCTAGTGCTTGACTTTGTGTTAAGGATCTCTTTCATTTTAATCCTACTCCATAAACATGAAAGTGAATTTTTTGTAAGGTATATACATGTGTAGGTCTAGCCTAACTTCTATATTCAAACAAATAAGATCGACACCAAATTCCTGATATTATCCATATATTTATCTGCTTTTTTCATATAGTATCTTGTGCTAGTTGTTTCTGGAGAAGTATTTGCTTACAAGTCTAAGAATTAAACATTGGGATCTAATTTTTCTCTCATTTCAGGATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGATGAAGGGTGCTGATGTGGTACAAATACCAGAAGATTATACTCTTCTTGACCTGGTTCAGATCGGGCTTAATTCGACTCACGCGGCTGTTGGGGTGCTAGTTCGTTTGAGGGAAGAATTATCCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAAGTGAGAAAAATACTCTTCGCTGTGACTTTGCCTCCTTTTTCTATCCCTTGAATCATTCCTGGGTTAGGGTTAATTTCCTTTTCCTATTGATATTGATCATGCATCCCTTTTCCTGATTTTTCTTTTGGTCATGGACAGTACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACTGTAAGCTGTTCTATTAAGTGTTCAAAAATGTTGCTTTGTTAATTATTCATGCAGTTCTCCTGCCTTTGTTTTCTTGGCTATCAGTCTATTTGATTTTAAACAACAAGACATTGCGTTTAATATAATTATGTTAGCCTGCTAAACTGGATCTGGGAGGATTTCCTTGGAGCAAATTATACCGTGTATGCATCCTCTTTCTGACTCCACATTTCACGAGCATTGTGGTTGGGAACACCGAGAATATAAACGCTAACTGTTATGAATAAAGTTTGACGGAATATCTTGGGAAGTTTTGAGGATTCATCAGGAATTGGGAGTTTCCTGTGCTGGCTCCCAATTTGAAACTAGGACAGACTCTATAGACTTTACTTAGATGCATGAAGTGGACAAAACTAGTGACCTATGTCGTATTGTAACCAATGAGAATGTAGTGTTTACACGAAATGTCAACCAAAATTTTCGTGATACTGCCTGTAGTGCCATCCTTATTGCTGTAACATATGGAAGATGCTCTTTTAATGTGATTATTATGTGTTCTTATTCTGAATTATTAGGATATGTTTCTGGTGTAGTTTATGTTTAGAAAGGAGATGGATGGCTGAGCAAAGTAAAAAAATTAATATAAAAAGTCCCCTTCTTGCCAAATGGTATTGACTCGTAAAGGAGTAAAGCAAAGAGCTCTCTAGAGTCATTACAGGTCTGTTTCGCTGACATGGGCTCAGAACTTGACATTGATGCGAAGAGGCTACACCACAATGCATAGATGGTTGTGGTTGATTTTTTAGAGATCGGAGCCTTTGTTAGCCTGACAGTGGCATACATCAATTCTTTGGTGTGGCACATGGGCATATTATCTGTCTTTCTTCTGTCAGTACCATAATTGCTTACAAGTCAATTGTGGAATGCCTTGTTCTAATTATTTGATACACTTGACAAGTAGCACCTTTTCACTTAACTGCAAGAGATCTGATCATTGATAAGCAACTAAGTATGCATCTTATTTTTTTTTGGCATGGCTGTAAATTTTTTTGATTAATCGTTACATTTTGTTAAAAATATCTTATTACTGTAGCTTGCCTGTTTAAGTGTGGTCACTGACAGTCCCATCATATGCAGGTGAATGCATTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCC</genome_strand>
        <mrna_strand>GCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGATGAAGGGTGCTGATGTGGTACAAATACCAGAAGATTATACTCTTCTTGACCTGGTTCAGATCGGGCTTAATTCGACTCACGCGGCTGTTGGGGTGCTAGTTCGTTTGAGGGAAGAATTATCCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAA..........................................................................................................................................TACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGCATTTAGGTCCATGATTCATGANCATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309463" ref_strand="+" ref_description="SGN-E309463 [cTOA-2-C22]">
      <seq>gaattcggtgactctatgagagatgcattgctaatacgccagagttttttggatcttcgagataattttagaatggttgttgatcctactttgcaatctaatactaaaggtctcaaagctcgaaagcaagttgtattagatgggcctgtgagttctggtaagagtattgcccttgcaatgcttgttaattgggcacgtgatgaaggttggctagttctttatgttcctaaaggccgagaatggactcatggaggctttttctataaaaatcctaaaacaggattatgggatactcctgtgcaagcagcaaatgttctccaggatttcttgaagtataataaggatcacctccaaaagataccctgcaaaatttttgaacctattccattgggagagggagctggtgttggatggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="86245" stop="89598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86545" g_stop="86653" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88259" g_stop="88470" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="321" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88471" i_stop="89203" i_length="733">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.914" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89204" g_stop="89298" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="416" r_length="95" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E309463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86545" e_stop="86653"/>
          <exon e_start="88259" e_stop="88470"/>
          <exon e_start="89204" e_stop="89298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAGGTGTGTTCTTTGTCTTTTTGTGCTGAATATGTTTAAAGGTCCATTTTCTGTCTTACCAGATATAGTGAATTATGATTGAAAAGAGTTCTGTTTTTCAGGAGTACTCATGTGAAATGTGGTTAAGTGGAGTATCAGTATCTACTTTTATAGAACCGTTAGTCTGCCTTGAATACTTAGTATTGAATAACGGACTAGATGGTTACATATGATTCATGTAGCTGGCTCCAACTTACTTGGCTTCCAGCATAATTGATTGACTAAAGCGAATTTGGTTTCTTCAAGTTTGTTGATTTATAATCAGTAATTAAGCCTTCAGCAGAAGGTTAGATTGAACTAGTTTGCTGGAACTGACTGAAGAGAGTAATTTGGAGGTATGAGCTTCAATTCATAAGAATACATTCAGCAATATGAACTCTTCAAGAAATCATATTCAGATGGTTGCAGAACGTGGTTTTATAGGACGGAAAAATTCACTTTAGAAAGTTTTAGATGGTTTGCATCAGTGTGGAAGGTTGTTTAAAGACTTGATCTACCAAAGAAGTATTTTTTTATAACCGAGAAGTCCCTGAAGCTGAAGATCAGTGGCGTGCGGTTCAACACTCAGTGGATAATGGACCTGTCGCTCTACCCTTCTCCACTTATATACCATTCTTTTGTTGGCAGTAGAGTTTGAACCTGTGACGTGCCTTAAACCCACAAATTATGCGTTGCTCATCTACAAAGAGAACTCATCATTCCACATTGTTTTTCTCATTTTTAAAATTAAAATGATTTTCCTTTTCTTGAAGTATGAGGGGAGAAGTCAATTACCTCAAATATGGAAAAGAGTACACGTTGAGTAGGAAATACAATTCAAGCTAAACCCTAGAGTATGTCTTCCCACCGAAGGAAGGAGAAAGACAGTTCGATAATTTACATTACATTTATCACCTGCGCTTTCTCTCCTCCTAATATCTGCATTGGTTTACAAGTAAAGCTGCCATTATGTCCCTTCTTTTGCTGCTTGCAGAAGTATCAAAACTTAATTGATTTATCATCTCATAGCTAAAGCTGAGTCTCTGCCCAGGACTCATGGATCATTTTGAAAATAAAACTGCCCTTACATTACCAGATTTTACTGTTTCTTAATAAACTACACTCAGTAGCTTCACTTTTTTTTTGAAATTAAGTAGCTTCACTTTTTTTAAATGATGGTGGTGTTTGGGCTAGCTTGCGCACCTCAACTAATTCCACCGGATACCGCTACCTCCACCAGCTAACAGGCACTGTGTAACTCTGCGCACCAAATGTTTGGGCATATGAGGATAAATCACGTAGTGTTTTTTTTCTTCACTTGGATTCGAACTTGAGACCTCATGAATTTTCTTCTTTTGTTATTTCTCTTCTATAATGATGTCAAGAGTATGCAGAGGCCTAGTGACACCGAAAGTAGTTTTTATATCTCAACTTATAGTTGTGCAATAATTTGAAGAAGATTGATTAATTTATCTTAAGAAAGCTATGTGTTCCACTTCATTTGATATCCGAAGAAAGTCTGTTGTTTATGAGCTGATTTTACTGAACTCATGTTTAGGAGAATGATTGACGATGTTCCTCAACTTGCAGGTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAGGCAAGAAATTGTACTTATTCTAATATATGAAACATAGTTTGACTAGTTAAATTTCATTTGGTAATTGATATTGTCAGCAAAGATAGGGTGGACCTTAGATTTGTGTACATCTTATCTCCCCAGACACTACTTGTGATTACCTTGGGTATGTTGTTGTTGTTAATTGATACTGTAATACATTTTTGTCTTCTGTAACTGAATGAACCCAGCTTCTCTTTACTTATTGTTTCAAATATTATATAATTTATGCAGAAACAGTTTTGCTCACCAGGATGTGAGAAATATATCTGCTAGTAGGATATACTCGGAAATCGTCTAACTTGGCTCTGCTATGTATACCTAGTGGATCTTCATACACTGCTTTAGAAAAAAAGAATCTGAAACTGTTCTTCAATGTCATTTAACAAATATGGATCACCATTTCTGCATGTTTTCCCCGTGACTTCACTATTACTCTATCTCCTCCATCTAGTGCTTGACTTTGTGTTAAGGATCTCTTTCATTTTAATCCTACTCCATAAACATGAAAGTGAATTTTTTGTAAGGTATATACATGTGTAGGTCTAGCCTAACTTCTATATTCAAACAAATAAGATCGACACCAAATTCCTGATATTATCCATATATTTATCTGCTTTTTTCATATAGTATCTTGTGCTAGTTGTTTCTGGAGAAGTATTTGCTTACAAGTCTAAGAATTAAACATTGGGATCTAATTTTTCTCTCATTTCAGGATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGAT</genome_strand>
        <mrna_strand>GAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E371001" ref_strand="+" ref_description="SGN-E371001 [TUS-29-J19](-)">
      <seq>cccttgtcaaggacgtgcctgttcttattgccgttgatcaatacaacagttggttcacattcagcgagtatgaggagccagtaactgttcgttcttgccgacctattcatgctagagaacttgcaactgtgaatgcatttaggtccatgattcatgacaatatgatggtgggtgctttctcgcattcaactgctgtagggaagctacgcaaagacttaccagatgttcctgcagatgctcgcgtcaatttcccacgttatagtgtggatgaagctgcatcagtttgtcattactacctgagacaacgactcattcagcgtgaggcatttacagaacaaagctggaagaaaatctattatctttcaaatggaaatggttcagaaatgagatggctggttcctttcatgagatgaaccacaaagaatcgatcttcaacagataactttgagattttaacctgtattgcatctgttagtgctctgtgaatctggtcattctcagcaacaaataatctggctgctttcttgacgaactctctaagtgaggtttgcttcttgaaattttgctctgtactctaggctagtttaggcgtatactgcctgtgtttgtatgctttggtatccagaacataaccgcagattcatatatacatcattacactgggctattgttctttccaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89118" stop="92109"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89418" g_stop="89458" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89459" i_stop="89596" i_length="138">
            <donor d_prob="0.891" d_score="1.00"/>
            <acceptor a_prob="0.942" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89597" g_stop="89683" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="128" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89684" i_stop="90799" i_length="1116">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90800" g_stop="90972" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="301" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90973" i_stop="91430" i_length="458">
            <donor d_prob="0.218" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91431" g_stop="91808" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="679" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="680" polyA_stop="696"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E371001" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E371001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89418" e_stop="89458"/>
          <exon e_start="89597" e_stop="89683"/>
          <exon e_start="90800" e_stop="90972"/>
          <exon e_start="91431" e_stop="91808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAAGTGAGAAAAATACTCTTCGCTGTGACTTTGCCTCCTTTTTCTATCCCTTGAATCATTCCTGGGTTAGGGTTAATTTCCTTTTCCTATTGATATTGATCATGCATCCCTTTTCCTGATTTTTCTTTTGGTCATGGACAGTACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACTGTAAGCTGTTCTATTAAGTGTTCAAAAATGTTGCTTTGTTAATTATTCATGCAGTTCTCCTGCCTTTGTTTTCTTGGCTATCAGTCTATTTGATTTTAAACAACAAGACATTGCGTTTAATATAATTATGTTAGCCTGCTAAACTGGATCTGGGAGGATTTCCTTGGAGCAAATTATACCGTGTATGCATCCTCTTTCTGACTCCACATTTCACGAGCATTGTGGTTGGGAACACCGAGAATATAAACGCTAACTGTTATGAATAAAGTTTGACGGAATATCTTGGGAAGTTTTGAGGATTCATCAGGAATTGGGAGTTTCCTGTGCTGGCTCCCAATTTGAAACTAGGACAGACTCTATAGACTTTACTTAGATGCATGAAGTGGACAAAACTAGTGACCTATGTCGTATTGTAACCAATGAGAATGTAGTGTTTACACGAAATGTCAACCAAAATTTTCGTGATACTGCCTGTAGTGCCATCCTTATTGCTGTAACATATGGAAGATGCTCTTTTAATGTGATTATTATGTGTTCTTATTCTGAATTATTAGGATATGTTTCTGGTGTAGTTTATGTTTAGAAAGGAGATGGATGGCTGAGCAAAGTAAAAAAATTAATATAAAAAGTCCCCTTCTTGCCAAATGGTATTGACTCGTAAAGGAGTAAAGCAAAGAGCTCTCTAGAGTCATTACAGGTCTGTTTCGCTGACATGGGCTCAGAACTTGACATTGATGCGAAGAGGCTACACCACAATGCATAGATGGTTGTGGTTGATTTTTTAGAGATCGGAGCCTTTGTTAGCCTGACAGTGGCATACATCAATTCTTTGGTGTGGCACATGGGCATATTATCTGTCTTTCTTCTGTCAGTACCATAATTGCTTACAAGTCAATTGTGGAATGCCTTGTTCTAATTATTTGATACACTTGACAAGTAGCACCTTTTCACTTAACTGCAAGAGATCTGATCATTGATAAGCAACTAAGTATGCATCTTATTTTTTTTTGGCATGGCTGTAAATTTTTTTGATTAATCGTTACATTTTGTTAAAAATATCTTATTACTGTAGCTTGCCTGTTTAAGTGTGGTCACTGACAGTCCCATCATATGCAGGTGAATGCATTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCAGTTTGTCATTACTACCTGAGGTATGCACATACCTCATAATACCCAAGGAAGAGTGAATAGCGAGGATTCTGTTGTGACCATTCACTCACTACATAAATACTGAAGAAAATAGAACTTACGATTGAACAAGAAAAGGAACAAAAGAACATTTGAATTATTAAATAAGGAAAAGGAAGTGAACAATTGAATTATCCCGCAAAAAGAAGGAAAAAGAATGAACAATTGATTTATCAAAAGGAAACACAAGCAAATAAACAATGGAAGAAGAAAAACCATGTAAAAAAGTTGGAACCATTTCTTTGAAAACAACAAAAGAAAAACAAAGAACTATGGAATGCCCAGAGAAGGAACGTAGAGTTATTTTTTAGGATTTATAACTTAGTTGAAGGTCTGCTTCATAAAGCTATCTTATGTTATGTGGCCACAGAACAACACTGTTTAATACTAACTCTCCTTGTGTAATTTTCTTATTTGACAGACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCA</genome_strand>
        <mrna_strand>CCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAA..........................................................................................................................................TACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGCATTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCAGTTTGTCATTACTACCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579218" ref_strand="-" ref_description="SGN-E579218 [86344]">
      <seq>tcttgccgacctattcatgctagagaacttgcaactgtgaatgcattttaggtccatgattcatgacaatatgatggtgggtgctttctcgcattcaactgctgtagggaagctgcgtaaagacttaccagttgttcctgcagatgctcgcgtcaatttcccacgttatagtgtggatgaagctgcatccgtttgtcattactacctgagacaacgactcattcagcgtgaggcatttacagaacaaagctggaagaaaatttattatctttcaaatggaaatggcgcagaaatgagatggctggttcctttcatgcgatgaaccacaaagaatcgaacttcaacagataacattgagattttaacaggaaagttattgcatctgttaatgctctgtgaatctggtcattctcagcaacaaataagctggctgctttcttgaccaactctctagagaaaacagtgaggtttacttcttgaaattttgctctgtacttctaggctagtttaggcatatactgcctgtgtttgtatgctttgatatctagaacataaccacagattcatattatacatcattacactgggctattgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="89348" stop="92103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89648" g_stop="89683" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89684" i_stop="90799" i_length="1116">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90800" g_stop="90972" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="210" r_length="174" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90973" i_stop="91430" i_length="458">
            <donor d_prob="0.218" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="91431" g_stop="91803" g_length="373"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="598" r_length="388" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E579218" ref_strand="-">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579218" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89648" e_stop="89683"/>
          <exon e_start="90800" e_stop="90972"/>
          <exon e_start="91431" e_stop="91803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCCGACCTATTCATGCTAGAGAACTTGCAACTGTAAGCTGTTCTATTAAGTGTTCAAAAATGTTGCTTTGTTAATTATTCATGCAGTTCTCCTGCCTTTGTTTTCTTGGCTATCAGTCTATTTGATTTTAAACAACAAGACATTGCGTTTAATATAATTATGTTAGCCTGCTAAACTGGATCTGGGAGGATTTCCTTGGAGCAAATTATACCGTGTATGCATCCTCTTTCTGACTCCACATTTCACGAGCATTGTGGTTGGGAACACCGAGAATATAAACGCTAACTGTTATGAATAAAGTTTGACGGAATATCTTGGGAAGTTTTGAGGATTCATCAGGAATTGGGAGTTTCCTGTGCTGGCTCCCAATTTGAAACTAGGACAGACTCTATAGACTTTACTTAGATGCATGAAGTGGACAAAACTAGTGACCTATGTCGTATTGTAACCAATGAGAATGTAGTGTTTACACGAAATGTCAACCAAAATTTTCGTGATACTGCCTGTAGTGCCATCCTTATTGCTGTAACATATGGAAGATGCTCTTTTAATGTGATTATTATGTGTTCTTATTCTGAATTATTAGGATATGTTTCTGGTGTAGTTTATGTTTAGAAAGGAGATGGATGGCTGAGCAAAGTAAAAAAATTAATATAAAAAGTCCCCTTCTTGCCAAATGGTATTGACTCGTAAAGGAGTAAAGCAAAGAGCTCTCTAGAGTCATTACAGGTCTGTTTCGCTGACATGGGCTCAGAACTTGACATTGATGCGAAGAGGCTACACCACAATGCATAGATGGTTGTGGTTGATTTTTTAGAGATCGGAGCCTTTGTTAGCCTGACAGTGGCATACATCAATTCTTTGGTGTGGCACATGGGCATATTATCTGTCTTTCTTCTGTCAGTACCATAATTGCTTACAAGTCAATTGTGGAATGCCTTGTTCTAATTATTTGATACACTTGACAAGTAGCACCTTTTCACTTAACTGCAAGAGATCTGATCATTGATAAGCAACTAAGTATGCATCTTATTTTTTTTTGGCATGGCTGTAAATTTTTTTGATTAATCGTTACATTTTGTTAAAAATATCTTATTACTGTAGCTTGCCTGTTTAAGTGTGGTCACTGACAGTCCCATCATATGCAGGTGAATGCA-TTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCAGTTTGTCATTACTACCTGAGGTATGCACATACCTCATAATACCCAAGGAAGAGTGAATAGCGAGGATTCTGTTGTGACCATTCACTCACTACATAAATACTGAAGAAAATAGAACTTACGATTGAACAAGAAAAGGAACAAAAGAACATTTGAATTATTAAATAAGGAAAAGGAAGTGAACAATTGAATTATCCCGCAAAAAGAAGGAAAAAGAATGAACAATTGATTTATCAAAAGGAAACACAAGCAAATAAACAATGGAAGAAGAAAAACCATGTAAAAAAGTTGGAACCATTTCTTTGAAAACAACAAAAGAAAAACAAAGAACTATGGAATGCCCAGAGAAGGAACGTAGAGTTATTTTTTAGGATTTATAACTTAGTTGAAGGTCTGCTTCATAAAGCTATCTTATGTTATGTGGCCACAGAACAACACTGTTTAATACTAACTCTCCTTGTGTAATTTTCTTATTTGACAGACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAAC----CTG-TATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCT-------A-AGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTAC-TCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATA-TATACATCATTACACTGGGCTATTGTTCT</genome_strand>
        <mrna_strand>TCTTGCCGACCTATTCATGCTAGAGAACTTGCAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAATGCATTTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTGCGTAAAGACTTACCAGTTGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCCGTTTGTCATTACTACCTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATTTATTATCTTTCAAATGGAAATGGCGCAGAAATGAGATGGCTGGTTCCTTTCATGCGATGAACCACAAAGAATCGAACTTCAACAGATAACATTGAGATTTTAACAGGAAAGTTATTGCATCTGTTAATGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAAGCTGGCTGCTTTCTTGACCAACTCTCTAGAGAAAACAGTGAGGTTTACTTCTTGAAATTTTGCTCTGTACTTCTAGGCTAGTTTAGGCATATACTGCCTGTGTTTGTATGCTTTGATATCTAGAACATAACCACAGATTCATATTATACATCATTACACTGGGCTATTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344048" ref_strand="+" ref_description="SGN-E344048 [cTOF-12-L9]">
      <seq>ttcagcgtgaggcatttacagaacaaagctggaagaaaatctattatctttcaaatggaaatggttcagaaatgagatggctggttcctttcatgagatgaaccacaaagaatcgatcttcaacagataactttgagattttaacctgtattgcatctgttagtgctctgtgaatctggtcattctcagcaacaaataatctggctgctttcttgacgaactctctaagtgaggtttgcttcttgaaattttgctctgtactctaggctagtttaggcgtatactgcctgtgtttgtatgctttggtatccagaacataaccgcagattcatatatacatcattacactgggctattgttctttccaatttcttttgcttgttttttctgacctgatgtattaattcaataatgttgtaattgcgcaatacattaaacctttcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91142" stop="92187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91442" g_stop="91887" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91888" i_stop="92026" i_length="139">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92027" g_stop="92036" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="456" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E344048" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91442" e_stop="91887"/>
          <exon e_start="92027" e_stop="92036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAATTCTTAGGCTTTATCCTTAGCAAGATGGATGCTTTTAAGATTTACCGCTGTAAAGATGACAGTTCTTCGATCATGGTTCCCACAATAATGTCTCTTGATATGTGACAATTGTTTGCTCATCTTTTGAAATTTTATGTAGGAGAAGATAA</genome_strand>
        <mrna_strand>TTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAA...........................................................................................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354475" ref_strand="+" ref_description="SGN-E354475 [cTOS-17-H20]">
      <seq>gaatcgatcttcaacagataactttgagattttaacctgtattgcatctgttagtgctctgtgaatctggtcattctcagcaacaaataatctggctgctttcttgacgaactctctaagtgaggtttgcttcttgaaattttgctctgtactctaggctagtttaggcgtatactgcctgtgtttgtatgctttggtatccagaacataaccgcagattcatatatacatcattacactgggctattgttctttccaatttcttttgcttgttttttctgacctgatgtattaattcaataatgttgtaattgcgcaatacattaaacctttcgaattcttaggctttatccttagcaagatggatgcttttaagatttaccgctgtaaagatgacagttcttcgatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="91251" stop="92260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91551" g_stop="91959" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="91960" i_stop="92026" i_length="67">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92027" g_stop="92036" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="419" r_length="10" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E354475" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354475" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91551" e_stop="91959"/>
          <exon e_start="92027" e_stop="92036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAATTCTTAGGCTTTATCCTTAGCAAGATGGATGCTTTTAAGATTTACCGCTGTAAAGATGACAGTTCTTCGATCATGGTTCCCACAATAATGTCTCTTGATATGTGACAATTGTTTGCTCATCTTTTGAAATTTTATGTAGGAGAAGATAA</genome_strand>
        <mrna_strand>GAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAATTCTTAGGCTTTATCCTTAGCAAGATGGATGCTTTTAAGATTTACCGCTGTAAAGATGACAGTTCTTCGATC...................................................................AAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616708" ref_strand="+" ref_description="SGN-E616708 [90178]">
      <seq>ctttaatattaatcaaattgaaatattttctaaccatctcctatattcgcttataattactacaaaatatcccttgttccaaaagtatttataaagtaaattcgtcggacttttaatttgattcttgtcgaagcaaaacgccggcgagctccagtcattgccaccatcatcttcaaaattttccgtctcttttggtggagttatccttacggagttcgtcaattttaagctgattgatgggaaccactgctacgccggaggaatggccgccggacgggcaattcccatttgatctttttgtatcgaagaagtataagtccttctgggatgctggaaacatccaatttaccgattctgttggcaatttgttcttcagcgttgaccgtcgtcgtcaacctcagaattcggcagcccagacccaccctcaaaaactaattcttgatgcatcggacaataccctgattcgcttagttcgattaattaaaggatcatggcaaggctttatggtaagtgataatgaagaaaaggagttgatgttcagtgtgaataagacgctaaatacatttactaaactagagtttgacatattccttggtgatggacatgttgaaggcgcagaggctgatcttaagatgaaaggttccgccttcaagagatcctgcaccatctacaaaggcaattccatagtagctgagactagccttatgtacacacttggattcaggaagcatttcattccaaggaacagatttcgagtaaccatatttcccgggttttgctgagcttagcctgttgtggcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94359" stop="91854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94062" g_stop="93576" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93575" i_stop="93149" i_length="427">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93148" g_stop="92936" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="695" r_length="213" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92935" i_stop="92260" i_length="676">
            <donor d_prob="0.975" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92259" g_stop="92153" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="802" r_length="107" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E616708" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E616708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94062" e_stop="93576"/>
          <exon e_start="93148" e_stop="92936"/>
          <exon e_start="92259" e_stop="92153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTAAATTCATCAAATTGAAATATTTTCCAACTCGTCTCCTTTATTCGATTATAATTACAATATAAAAAATATCCCTTGTTGCCAAAAGTAATTTATAAAGTTAAATTCGTCCGACTTTTAATTTGATTCTTGTCGAAGCAAAACGCCGGCGAACTCCGGTCATTGCCACCATCATCTTCAAAATTTTCCGTCTCTTTTGGCGGAGTTATCCTCCCGGAGTTCGTCAATTTTAAGCTGGTTGATGGAAACCACTGCTACGCCGGAGGAGTGGCCGCCGGACGGGCAATTTCCATTTGATCTTTTTGTATCGAAGAAGTATAAGTCCTTCTGGGATGCTGGAAACATCCAATTTACCGATGCTGTTGGTAATTTGTTCTTCAGCGTTGA-C--CGTCGTCAACCTCAGAATTCGGCAGCCCAGACCCACCCTCAAAAACTAATTCTCGATGCATCGGACAATACCCTGATTCGCTTAGTTCGATTAACTGTAAGTTTTCTTAATTGATAAAAAAAAAAAACAAGTTTATAGTCAGAAACTGCTTCTTTATGCATCTGATAGTACTGTCATTTGAATAGTTCCATTATCTTTCTCTGTTGTTGATTCTAATTTGTTGAGACAATGTTTAGCTGTTTACGTTACGGAAGGAAGAACAATTACTAAAAGGAAGCTCATTTCTATGTGCAAATGGTTCTTTTGTGATAACAATGTTGAATGTAGACGTGAAGGAGTCGCTCAGATGGTAAACGCGTAAGGTTGAGTTCATAGGGAGGGGTAGAAAAAATGTAGAATGTATACTAAAATAATTTGAATGCATTGATATCATCTCTTAAAATGATGAAGCAAAAGCGTTTGTTTGTATGGTTGTTTATCTTCTTAAGACGTCGTGTGATGTTATTTCTGTCCTCTCTTGTAGAAAGGATCATGGCAAGGCTTTATGGTAAGTGATAATGAAGAAAAGGCGTTGATGTTCAGTGTGAATAAGACACTAAATACATTCACTAAACTAGAGTTTGACATATTCCTTGGTGATGGACATGTTGAAGGCGCAGAGGCTGATCTTAAGATGAAAGGTTCTGCCTTCAAGAGATCATGCACCATCTACAAAGGCAATTCCATAGTAGCTGAGGTATTAATATACTAGTATATAGCAAGTTAAATAGTTAACCTACAGTAATCCAAGACCTATGCTAGTGGAAGGTGATCGAGACTCGATAGAGAAAAAGAAAAGAGCAGCTAATGAAAATCAAGTTTTAGGGGAGGAAAATCACTATGATTCCCTGTTTTGAATGAACTTTACGCCTCTTTTGCTGACCCAGAGGTATCTCACACAGGCTAACAAAGGCTCTGAGCTGTATCTTTCCCCTCCTATTGAACGCTGCTCCTTCCCTTGAACATTGTTCCTGTGTCCTACATAAACATCTATTTTTTTTTCCTGAATTTATCAAGGAAAAGCTCAAATGTATCATACCTTAAATCCTAGACTGTCAAAGAAACAATCAAGGTTGAGCCTATAGAAACATAGCATGATAAAATAGACTTCCTACCCTAACTTGATACTGGATCCGAAACTAACTATTTCCTACACATAGCAGTATAATATCTCGTCATTGATCATTGTAACATTTTCTCATGTATTCATTGTTCCCTGGTAGATCCATACATGTAGGAAACTATGTTTATGGTCGTGTTGGAAGGTGTAGATTTTGACTGGATTCTTTAGATCTACACAGATCCTTAATGTGTTCTTATTTCATGTTTGTCACATGTTGAGTTTTAACCTGCTTCATTGTGCTTGAATGCAGACTAGCCTTATGTACACACTTGGGTTCAGGAAGCATTTCATTCCAAGGAACAGATTTCGAGTAACCATATTTCCC-GGTTTGACTGAGCTTAGCCTTGTTGTGGCTTT</genome_strand>
        <mrna_strand>CTTTAATATTAATCAAATTGAAATATTTTCTAAC-CATCTCCTATATTCGCTTATAATTAC----TACAAAATATCCCTTGTT-CCAAAAGT-ATTTATAAAG-TAAATTCGTCGGACTTTTAATTTGATTCTTGTCGAAGCAAAACGCCGGCGAGCTCCAGTCATTGCCACCATCATCTTCAAAATTTTCCGTCTCTTTTGGTGGAGTTATCCTTACGGAGTTCGTCAATTTTAAGCTGATTGATGGGAACCACTGCTACGCCGGAGGAATGGCCGCCGGACGGGCAATTCCCATTTGATCTTTTTGTATCGAAGAAGTATAAGTCCTTCTGGGATGCTGGAAACATCCAATTTACCGATTCTGTTGGCAATTTGTTCTTCAGCGTTGACCGTCGTCGTCAACCTCAGAATTCGGCAGCCCAGACCCACCCTCAAAAACTAATTCTTGATGCATCGGACAATACCCTGATTCGCTTAGTTCGATTAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCATGGCAAGGCTTTATGGTAAGTGATAATGAAGAAAAGGAGTTGATGTTCAGTGTGAATAAGACGCTAAATACATTTACTAAACTAGAGTTTGACATATTCCTTGGTGATGGACATGTTGAAGGCGCAGAGGCTGATCTTAAGATGAAAGGTTCCGCCTTCAAGAGATCCTGCACCATCTACAAAGGCAATTCCATAGTAGCTGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGCCTTATGTACACACTTGGATTCAGGAAGCATTTCATTCCAAGGAACAGATTTCGAGTAACCATATTTCCCGGGTTTTGCTGAGCTTAGCC-TGTTGTGGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335588" ref_strand="+" ref_description="SGN-E335588 [cTOE-8-A9]">
      <seq>gaactccggtcattgccaccatcatcttcaaaattttccgtctcttttggcggagttatcctcccggagttcgtcaattttaagctggttgatggaaaccactgctacaccggaggagtggccgccggacgggcaatttccatttgatctttttgtatcgaagaagtataagtccttctgggatgctggaaacatccaatttaccgatgctgttggtcatttgttcttcagcgttgaccgtcgtcaacctcagaattcggcagcccagacccaccctcaaaaactaattctcgatgcatcggacaataccctgattcgcttagttcgattaactaaaggatcatggcaaggctttatggtaagtgataatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="94209" stop="92811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93909" g_stop="93576" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93575" i_stop="93149" i_length="427">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="93148" g_stop="93111" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="372" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E335588" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93909" e_stop="93576"/>
          <exon e_start="93148" e_stop="93111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACTCCGGTCATTGCCACCATCATCTTCAAAATTTTCCGTCTCTTTTGGCGGAGTTATCCTCCCGGAGTTCGTCAATTTTAAGCTGGTTGATGGAAACCACTGCTACGCCGGAGGAGTGGCCGCCGGACGGGCAATTTCCATTTGATCTTTTTGTATCGAAGAAGTATAAGTCCTTCTGGGATGCTGGAAACATCCAATTTACCGATGCTGTTGGTAATTTGTTCTTCAGCGTTGACCGTCGTCAACCTCAGAATTCGGCAGCCCAGACCCACCCTCAAAAACTAATTCTCGATGCATCGGACAATACCCTGATTCGCTTAGTTCGATTAACTGTAAGTTTTCTTAATTGATAAAAAAAAAAAACAAGTTTATAGTCAGAAACTGCTTCTTTATGCATCTGATAGTACTGTCATTTGAATAGTTCCATTATCTTTCTCTGTTGTTGATTCTAATTTGTTGAGACAATGTTTAGCTGTTTACGTTACGGAAGGAAGAACAATTACTAAAAGGAAGCTCATTTCTATGTGCAAATGGTTCTTTTGTGATAACAATGTTGAATGTAGACGTGAAGGAGTCGCTCAGATGGTAAACGCGTAAGGTTGAGTTCATAGGGAGGGGTAGAAAAAATGTAGAATGTATACTAAAATAATTTGAATGCATTGATATCATCTCTTAAAATGATGAAGCAAAAGCGTTTGTTTGTATGGTTGTTTATCTTCTTAAGACGTCGTGTGATGTTATTTCTGTCCTCTCTTGTAGAAAGGATCATGGCAAGGCTTTATGGTAAGTGATAATGA</genome_strand>
        <mrna_strand>GAACTCCGGTCATTGCCACCATCATCTTCAAAATTTTCCGTCTCTTTTGGCGGAGTTATCCTCCCGGAGTTCGTCAATTTTAAGCTGGTTGATGGAAACCACTGCTACACCGGAGGAGTGGCCGCCGGACGGGCAATTTCCATTTGATCTTTTTGTATCGAAGAAGTATAAGTCCTTCTGGGATGCTGGAAACATCCAATTTACCGATGCTGTTGGTCATTTGTTCTTCAGCGTTGACCGTCGTCAACCTCAGAATTCGGCAGCCCAGACCCACCCTCAAAAACTAATTCTCGATGCATCGGACAATACCCTGATTCGCTTAGTTCGATTAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGATCATGGCAAGGCTTTATGGTAAGTGATAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250315" ref_strand="+" ref_description="SGN-E250315 [cLEG-6-P17]">
      <seq>atttgcacaagcttcatataatatactgtgaagtcccaattatgtaagtcgaagtagctcaagaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaagaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagaggtttgtaaaattttgatggttaacactttaaagttcaacatgagaattcggacattttttgaatttatatagtatctgaaattacttttgtagttaaaaagtaagttgaagtatttcaaatgtctcagtttttcgagtttcttaggtgcactatcaaataggtttgagttactatcaccaacgatttacaagaaaacacctcaattatcaattgtattctttttcctacctgaatgatgttagtatttcagattgggcaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95014" stop="96248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95314" g_stop="95511" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95948" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="541" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E250315" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95314" e_stop="95511"/>
          <exon e_start="95606" e_stop="95948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCACAAGCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACG</genome_strand>
        <mrna_strand>ATTTGCACAAGCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAAGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAAGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAAGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E250423" ref_strand="+" ref_description="SGN-E250423 [cLEG-6-P9]">
      <seq>atttgcacaagcttcatataatatactgtgaagtcccaattatgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaagaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagaggtttgtaaaattttgatggttaacactttaaagttcaacatgagaattcggacattttttgaatttatatagtatctgaaattacttttgtagtttaaaagtaggttgaagtatttcaaatgtctcagtttttcgagtttcttaagtgcactatcaaataggtttgagttactatcacccacgatttacaagaaaacacctcaattatcaatcgtattctttttcctacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95014" stop="96216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95314" g_stop="95511" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95916" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="509" r_length="311" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E250423" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95314" e_stop="95511"/>
          <exon e_start="95606" e_stop="95916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCACAAGCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACC</genome_strand>
        <mrna_strand>ATTTGCACAAGCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAAGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTTAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAAGTGCACTATCAAATAGGTTTGAGTTACTATCACCCACGATTTACAAGAAAACACCTCAATTATCAATCGTATTCTTTTTCCTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E330103" ref_strand="+" ref_description="SGN-E330103 [cTOD-5-M6]">
      <seq>gcttcatataatatactgtgaagtcccaattatgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagaggtttgtaaaattttgatggttaacactttaaagttcaacatgagaattcggacattttttgaatttatatagtatctgaaattacttttgtagttaaaaagtaggttgaagtatttcaaatgtctcagtttttcgagtttcttaggtgcactatcaaataggtttgagttactatcaccaacgatttacaagaaaacacctcaattatcaattgtattctttttcctacctgaatgatgttagtatttcagattgggcaacggaacaacggatagttgaagtgtgttttgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95024" stop="96279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95324" g_stop="95511" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95979" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="562" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E330103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95324" e_stop="95511"/>
          <exon e_start="95606" e_stop="95979"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATA</genome_strand>
        <mrna_strand>GCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309318" ref_strand="+" ref_description="SGN-E309318 [cLEY-22-J2]">
      <seq>ctcgtgccgaattcggcacgagggcttcatataatatactgtgaagtcccaattatgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctgaggttaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaacgcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcagaaaagagaagagaaaaactatgcacaatgaagagctgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95024" stop="98567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95325" g_stop="95511" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="211" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="292" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="384" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="453" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="495" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98267" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="580" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E309318" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95325" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98267"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATG</genome_strand>
        <mrna_strand>CTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAAACTATGCACAATGAAGAGCTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276652" ref_strand="+" ref_description="SGN-E276652 [cLEN-14-I9]">
      <seq>ccaattatgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctgaggttaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaacgcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcagaaaagagaagagaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95049" stop="98543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95349" g_stop="95511" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="244" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="336" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="405" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="447" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98243" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="508" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E276652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95349" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAAC</genome_strand>
        <mrna_strand>CCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701230" ref_strand="+" ref_description="SGN-E701230 [FA15BE11]">
      <seq>cacttatgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctgaggttaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaacgcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcagaaaagagaagagaaaactaatgcacaatgaagagctgaatgagatgtgtaaactatatgatgttattcgtgttgatactgaagaaaaaggccgagaagtgcaagaagagactactgagctggaagatcacaagatgatgtcccaatatttgcctcttttacgagaagtcatgccaagtgctgctgaagaaattgagtcagagattcataattacgtagtgaaacaagatggttacgtttatgactattatactgtttagactgataacaaccctgatgaggatattgcttgcccttttccattggtacaagttgatgaagatgatgattactatgacggccctgatcattcagactacgaatctgatgattccaatgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95050" stop="99515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95350" g_stop="95511" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="243" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="335" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="446" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98334" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="598" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98335" i_stop="98438" i_length="104">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98439" g_stop="98557" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="717" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="98558" i_stop="98977" i_length="420">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="98978" g_stop="99053" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="718" r_stop="793" r_length="76" r_score="0.987"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="867" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E701230" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>867</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701230" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95350" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98334"/>
          <exon e_start="98439" e_stop="98557"/>
          <exon e_start="98978" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGAGTAAGTGTTTTTGTAATTACATGCTAGCTTCATAAGTTACTGTCGCATGTGTTATCTTTTTCCTTCACAAATGAAAAAGAGATGGTTTTATGACATTGATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAGGTTTCTATATTGCTTCTTCCCTTTTCCAGGGATTTGTTTTCAAATTCAATCTCATGATTTGCTCCCCCCCCCCCCCCTCCCCCCCAGCGCAAGGGAATCCCTATAAGCTATAGATTGCTCTGTGAAGTTTTTATCAACTTGACAAATTTCATTAACGTATTTATGTTCTGAAACAAGATGAAATGGTAAAAAATCTAGCTTATCATCACTGGCCATTTCAGCCATGCTTCTAGGGAAGGTACTCTAGCTAGAGTTCTGCATTCATTCCTAACCAATCGAATTTTGAATGCTTTCCGTTCCTGAGTCTCTGGAAGAATTACTATTGTGAATTTGGCCAAATGGGCACTGGAGCTTGCTGTCTGTTGTCATTTTTATGTGAGTTTATTGAAGGTTATGCTAATTCCTGTGCAGCATCTTCAGATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG</genome_strand>
        <mrna_strand>CACTTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGA........................................................................................................GACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTACGTTTATGACTATTATACTGTTTAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATT......................................................................................GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E220945" ref_strand="+" ref_description="SGN-E220945 [cLEL-22-E5](-)">
      <seq>caccagtgtaagtcgaagtagctcaggaaacaccgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctgaggttaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaacgcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95056" stop="98542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95350" g_stop="95511" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="243" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="335" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="404" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="446" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98241" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="505" r_length="59" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E220945" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95350" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAA</genome_strand>
        <mrna_strand>CACCAGTGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E413114" ref_strand="+" ref_description="SGN-E413114 [STM-17-I22]">
      <seq>gaaacaccgccgctgacattctttccggcatcaatggctgcagtcgcggagagttcttctgttcccgcaaaggaagacaagctcgtcgttgttagggttaagagaaaaactttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccattgctcgactttgcaaagctttcaatcgatgaatcttcaagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagacagtaactagttcagaagtcactgttgatatcgtgaagttttttgtgtcggctccagcagattctacagaagtcgaagagaaatctgatgctaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaaagcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcagaaaagagaagagaaaactaatgcacaatgaagagctgaatgagaagtgtcaactatatgatgttattcgtgttgatactgaagaaaaaagccatgaagtgcaagaggaatgcangactaccgagctggaagatcacaagatgatgtcccaatatttgcctcttttacgagaagtcatgccaagtgctgctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95076" stop="98816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95376" g_stop="95511" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.728" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="309" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="378" r_length="69" r_score="0.928"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="420" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98334" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="572" r_length="152" r_score="0.961"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="98335" i_stop="98432" i_length="98">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="98433" g_stop="98516" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="656" r_length="84" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E413114" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E413114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95376" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98334"/>
          <exon e_start="98433" e_stop="98516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGAGTAAGTGTTTTTGTAATTACATGCTAGCTTCATAAGTTACTGTCGCATGTGTTATCTTTTTCCTTCACAAATGAAAAAGAGATGGTTTTATGACATTGATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGA</genome_strand>
        <mrna_strand>GAAACACCGCCGCTGACATTCTTTCCGGCATCAATGGCTGCAGTCGCGGAGAGTTCTTCTGTTCCCGCAAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAACTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCATTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCAAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACAGTAACTAGTTCAGAAGTCACTGTTGATATCGTGAAGTTTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCAGATTCTACAGAAGTCGAAGAGAAATCTGATGCTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAAAGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGAAGTGTCAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAAGCCATGAAGTGCAAGAGGA..................................................................................................ATGCANGACTACCGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471709" ref_strand="+" ref_description="SGN-E471709 [cSTB-25-A13]">
      <seq>gaaacaccgccgctgacattctttccggcatcaatggctgcagtcgcggagagttcttctgttcccgcaaaggaagacaagctcgtcgttgttagggttaagagaaaaactttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccattgctcgactttgcaaagctttcaatcgatgaatcttcaagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagacagtaactagttcagaagtcactgttgatatcgtgaagttttttgtgtcggctccagcagattctacagaagtcgaagagaaatctgatgctaggcgaagttttaggacagaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95076" stop="97182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95376" g_stop="95511" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="0.98"/>
            <acceptor a_prob="0.728" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="217" r_length="81" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="309" r_length="92" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="378" r_length="69" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E471709" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95376" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG</genome_strand>
        <mrna_strand>GAAACACCGCCGCTGACATTCTTTCCGGCATCAATGGCTGCAGTCGCGGAGAGTTCTTCTGTTCCCGCAAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAACTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCATTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCAAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACAGTAACTAGTTCAGAAGTCACTGTTGATATCGTGAAGTTTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCAGATTCTACAGAAGTCGAAGAGAAATCTGATGCTAGGCGAAGTTTTAGGACAGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334982" ref_strand="+" ref_description="SGN-E334982 [cTOE-9-F4]">
      <seq>aaacaccgccgctgaccattctttccggcagcaatggcctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95077" stop="95927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95377" g_stop="95511" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95627" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="159" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E334982" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95377" e_stop="95511"/>
          <exon e_start="95606" e_stop="95627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACCGCCGCTGA-CATTCTTTCCGGCAGCAATGG-CTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCC</genome_strand>
        <mrna_strand>AAACACCGCCGCTGACCATTCTTTCCGGCAGCAATGGCCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311608" ref_strand="+" ref_description="SGN-E311608 [cLEZ-9-I5]">
      <seq>accgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctgaggttaggcgaagttttaggacagaaaagaaacaagatcaactacttgccaaggcaaagcaaacgcaagaggatttgtcgaaaaatgcccggtttgagcaaatatggaaaagcagaaaagagaagagaaaactaatgcacaatgaagagctgaatgagatgtgtaaactatatgatgttattcgtgttgatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95081" stop="98606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95381" g_stop="95511" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="212" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="304" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96882" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="373" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="96979" g_stop="97020" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="415" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="98183" g_stop="98306" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="539" r_length="124" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E311608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95381" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96882"/>
          <exon e_start="96979" e_stop="97020"/>
          <exon e_start="98183" e_stop="98306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAGGTAAGCTCTTTCTTGATTTACCCAAGAATTTTGCATCTACCAGAGCTTTAGCTTAATTATAATTGATAAATGCATGTACTTAATTGATATCTGCAGAAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAGGTATTACCAGAGTTCTATACCTTCAGATCTACTTGTGTAGTAATTCAATTTTGTTTTTTCACTCTTACTATTTCATGGATGGATCTTTCCTCTTGTACTAGTTAATAGCAATTTAGCCACACAGCATGTAATTTGCTGTTCTATTTTTTTATTTGTGGAACTCTTGTTTTCCTTTTTGTCAAATGTAATTATTTCTAGTGTGGTTAGTCATTATGTTGATGCGAAACATTTATGTCTGAACGAAACAGAATTGCTTTAAGTGGTTTGATGTTCTAATTGGAGATTACTGATAAAAAAGTAAAAGAGAGATAATACAAATTTACGTTCTTTTTTCTCATAATATGGTGTCTAGATTGTGTGCACTTTGACTAATCCCATGGGATACATACCACATCCCACCAGCAATGGTACCACTTGTTTTTGAATGTTACAATCAAATAGTGGTTAAGGATGTAATTTGCTTGTTAATACCCAAATGACATTCTTAAATGCTGTTTAATTCTAACAATCAGAAAAAAAATTGAATACCAAACGAAGGATGAATATACTTGAACAGTTCTGATATTGATATAAAGAAACAAAACTATCTATAGGAACACTTTACATGACATGCATATCTGTCTGAAAAAAATAAGCAAGTGGAATATATTATTCAGTTTTAGCTGATATATTTGGATTTACCAAGGAAAAAAAATAAAGAATGTTGCGTGGGGAAAATTGATGAAGAATTTTTCTGAACATATTTTTAGTATATGATAGTGCGGTCGTAAACTTTGTTGCCTATTCTACAACATATCTTTTAAACTTTTTTAACTCTGCATCTGTAGGTGCTTGTTGCTAAATCTAGCTTATGAAACTGTGTTGCTAGTTTAGCGAATTCCACATCTGATTTGCTATTATTATATTGTATTCTAGAGGTTTGTGCATGTGATTGATTTCATAAATGTATTGGGTTTTGAAGTTTGTGCCAACGGCGGCACTCTTTGCTCTTTTCGTTATTACAATATTATCAAACTTGATTCATTTAAACCTTATGGTCTTAAGTGGGTTTTGAATAACCTTAATAGTGGTTTCTTGTGTAGTAGATTCACTTATCTTTTCTCCTAATTGAATTTTTCTAGGCTTTTTAAGATTTAGCTTATCTTGCTCTTCCCTCCTTCAGGATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTG</genome_strand>
        <mrna_strand>ACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG................................................................................................AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311765" ref_strand="+" ref_description="SGN-E311765 [cLEZ-9-I6]">
      <seq>accgccgctgacattctttccggcagcaatggctgcagtcggggagagttcttctgttccggcgaaggaagacaagctcgtcgttgttagggttaagagaaaagctttccagtctcgacttgacgctttctggcttgaaatcaatgagaggccagccaaacgaccgttgctcgactttgcaaagctttcaatcgatgaatcttctagtagagttgaggaattgaagagcagaaaggtacttgtgcaacatgtggagaccgtaactagctcagaagtcactgttgatatcgtgaagtcttttgtgtcggctccagctgtttcttcagaagtcgaagagaaatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="95081" stop="97153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="95381" g_stop="95511" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.728" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="95606" g_stop="95686" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="212" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629">
            <donor d_prob="0.749" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96316" g_stop="96407" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="304" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96814" g_stop="96853" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="344" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E311765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="95381" e_stop="95511"/>
          <exon e_start="95606" e_stop="95686"/>
          <exon e_start="96316" e_stop="96407"/>
          <exon e_start="96814" e_stop="96853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCTGTAAGTTCTAGGGTTTTTCACAGACAATCTTTTGTTATTTTCGGTTTATTCGAAGCTTAACTTTTCGATCATTCCTATTGTTGTGCACCGCCAGGGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATAAATAATAGTTGGTGATATTTCAGGTAGGGAACTCGTACACCTTATAATTAAGATATGAAATTCAGACAAATGGGAACTTTAGTTGTGCTTTGACCATTAACTCTAAGAAGTATTGGAAAAATGTTTGATAAGTTGTAGAAAAAGACAGCTGGTTGACAGAGGTATAGTTCGTTGGATGTTAGTTACATATATGCTCAAATGAGTAATTGGTTATTTTGTGGATTTCTAATTTCTATTGTAGTTCAAGAGCAACAAATGCAGTTCTAAGATTGTAACATGCCAGGTCTTTCTATTTTTTTGATTTCTATACCGTTATGTACTAATAATTATTTTCAGTTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTGGTTAGTTGTAGTATAATCTACATTTTTAATATACACATCCTATTTTACTGCAACTAGTTGCTTCTTTTGCATTGTTCATCTTGCTATTTTGCTGTTGTTATTTTCTTTCAAATCCTCCTTTGTTTTCACTTCTTTTAAGCCAAGGATCTATCGGAAATAACTCTCTATCTCTCAAAGGTAGGGGTAAGTCTGCATACATCCTACCCTCCCAAGACCCACTTATGGGACCTTATTGGGTATGTTGTTGTTGTACTTGTACCCTTGAAGTGTGAGAATTTTGTAGCACTTGTATTATCAAGCCATACTTTTAAAAGGGTTTTTGAGTTGTTTGTGCAATTATTTTACTAGCTTACTTCTCACCCTGATAGAAGCTACAATGAGTTTTCTAATAGCTGCATTTTATCAGTCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTG</genome_strand>
        <mrna_strand>ACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT..............................................................................................GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E452328" ref_strand="+" ref_description="SGN-E452328 [cSTS-16-O4]">
      <seq>ctaatgcacaatgaagagctgaatgagaagtgtcaactatatgatgttattcgtgttgatactgaagaaaaaagccatgaagtgcaagaggaatgcaggactaccgagctggaagatcacaagatgatgtcccaatatttgcctcttttacgagaagtcatgccaagtgctgctgaagaaattgagtcagagattcataattacgtctcgaaacaagcatcttcagatggttatgtttatgactattatactgttaagaatgataccaaccctgacgaggatattgcttgcccttttccattggtacaagttgatgaagatgatgattactatgacggccctgatcattcagactatgagtctgatgattccaatgctgaacataatccctggaatgattatccggatgaagaggaatctgaagatgaggatgaaacccaggcatcaaatgatgaatcagaagcttcaagcagcacttctgaggaacaatatggatctgaaactgttggtgtaatttcttttacaaatgaggatgtgggccgtgaagactggacagattatgcagatccaatccttgaaggtgatatgtatggtgagtccgatgttgaagcttccgatgatgatgaggacatatggtgatcatcactacaacaccatgtttaaaaatttctcatcagtaccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97943" stop="99919"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98243" g_stop="98334" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98335" i_stop="98432" i_length="98">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98433" g_stop="98557" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="217" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98558" i_stop="98968" i_length="411">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98969" g_stop="99053" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="376" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99314" g_stop="99619" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="683" r_length="307" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E452328" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E452328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98243" e_stop="98334"/>
          <exon e_start="98433" e_stop="98557"/>
          <exon e_start="98969" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
          <exon e_start="99314" e_stop="99619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGAGTAAGTGTTTTTGTAATTACATGCTAGCTTCATAAGTTACTGTCGCATGTGTTATCTTTTTCCTTCACAAATGAAAAAGAGATGGTTTTATGACATTGATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAGGTTTCTATATTGCTTCTTCCCTTTTCCAGGGATTTGTTTTCAAATTCAATCTCATGATTTGCTCCCCCCCCCCCCCCTCCCCCCCAGCGCAAGGGAATCCCTATAAGCTATAGATTGCTCTGTGAAGTTTTTATCAACTTGACAAATTTCATTAACGTATTTATGTTCTGAAACAAGATGAAATGGTAAAAAATCTAGCTTATCATCACTGGCCATTTCAGCCATGCTTCTAGGGAAGGTACTCTAGCTAGAGTTCTGCATTCATTCCTAACCAATCGAATTTTGAATGCTTTCCGTTCCTGAGTCTCTGGAAGAATTACTATTGTGAATTTGGCCAAATGGGCACTGGAGCTTGCTGTCTGTTGTCATTTTTATGTGAGTTTATTGAAGGTTATGCTAATTCCTGTGCAGCATCTTCAGATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTT-AAAATTTCTCATCAGTACCTA</genome_strand>
        <mrna_strand>CTAATGCACAATGAAGAGCTGAATGAGAAGTGTCAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAAGCCATGAAGTGCAAGAGGA..................................................................................................ATGCAGGACTACCGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTCTCGAAACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCAGATGGTTATGTTTATGACTATTATACTGTTAAGAATGATACCAACCCTGACGAGGATATTGCTTGCCCTTTTCCATT......................................................................................GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTATGAGTCTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTATCCGGATGAAGAGGAATCTGAAGATGAGGATGAAACCCAGGCATCAAATGATGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATATGGATCTGAAACTGTTGGTGTAATTTCTTTTACAAATGAGGATGTGGGCCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGGTGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGACATATGGTGATCATCACTACAACACCATGTTTAAAAATTTCTCATCAGTACCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E424404" ref_strand="+" ref_description="SGN-E424404 [STM-43-D15]">
      <seq>ctaatgcacaatgaagagctgaatgagaagtgtcaactatatgatgttattcgtgttgatactgaagaaaaaagccatgaagtgcaagaggaatgcaggactaccgagctggaagatcacaagatgatgtcccaatatttgcctcttttacgagaagtcatgccaagtgctgctgaagaaattgagtcagagattcataattacgtctcgaaacaagcatcttcagatggttatgtttatgactattatactgttaagaatgataccaaccctgacgaggatattgcttgcccttttccattggtacaagttgatgaagatgatgattactatgacggccctgatcattcagactatgagtctgatgattccaatgctgaacataatccctggaatgattatccggatgaagaggaatctgaagatgaggatgaaacccaggcatcaaatgatgaatcagaagcttcaagcagcacttctgaggaacaatatggatctgaaactgttggtgtaatttcttttacaaatgaggatgtgggccgtgaagactggacagattatgcagatccaatccttgaaggtgatatgtatggtgagtccgatgttgaagcttccgatgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97943" stop="99861"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98243" g_stop="98334" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98335" i_stop="98432" i_length="98">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98433" g_stop="98557" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="217" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98558" i_stop="98968" i_length="411">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98969" g_stop="99053" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="302" r_length="85" r_score="0.953"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="376" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99314" g_stop="99561" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="624" r_length="248" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E424404" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E424404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98243" e_stop="98334"/>
          <exon e_start="98433" e_stop="98557"/>
          <exon e_start="98969" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
          <exon e_start="99314" e_stop="99561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGAGTAAGTGTTTTTGTAATTACATGCTAGCTTCATAAGTTACTGTCGCATGTGTTATCTTTTTCCTTCACAAATGAAAAAGAGATGGTTTTATGACATTGATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAGGTTTCTATATTGCTTCTTCCCTTTTCCAGGGATTTGTTTTCAAATTCAATCTCATGATTTGCTCCCCCCCCCCCCCCTCCCCCCCAGCGCAAGGGAATCCCTATAAGCTATAGATTGCTCTGTGAAGTTTTTATCAACTTGACAAATTTCATTAACGTATTTATGTTCTGAAACAAGATGAAATGGTAAAAAATCTAGCTTATCATCACTGGCCATTTCAGCCATGCTTCTAGGGAAGGTACTCTAGCTAGAGTTCTGCATTCATTCCTAACCAATCGAATTTTGAATGCTTTCCGTTCCTGAGTCTCTGGAAGAATTACTATTGTGAATTTGGCCAAATGGGCACTGGAGCTTGCTGTCTGTTGTCATTTTTATGTGAGTTTATTGAAGGTTATGCTAATTCCTGTGCAGCATCTTCAGATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGAT</genome_strand>
        <mrna_strand>CTAATGCACAATGAAGAGCTGAATGAGAAGTGTCAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAAGCCATGAAGTGCAAGAGGA..................................................................................................ATGCAGGACTACCGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTCTCGAAACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCAGATGGTTATGTTTATGACTATTATACTGTTAAGAATGATACCAACCCTGACGAGGATATTGCTTGCCCTTTTCCATT......................................................................................GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTATGAGTCTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTATCCGGATGAAGAGGAATCTGAAGATGAGGATGAAACCCAGGCATCAAATGATGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATATGGATCTGAAACTGTTGGTGTAATTTCTTTTACAAATGAGGATGTGGGCCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGGTGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E612811" ref_strand="+" ref_description="SGN-E612811 [62578]">
      <seq>gttattcgtgttgatactgaagaaaaaagccatgaagtgcaagaggaatgcaggactaccgagctggaagatcacaagatgatgtcccaatatttgcctcttttacgagaagtcatgccaagtgctgctgaagaaattgagtcagagattcataattacgtctcgaaacaagcatcttcagatggttatgtttatgactattatactgttaagaatgataccaaccctgacgaggatattgctagcccttttccattggtacaagttgatgaagatgatgattactatgacggccctgatcattcagactacgaatctgatgattccaatgctgaacataatccctggaatgattatccggatgaagaggaatctgaagatgaggatgaaacccaggcatcaaatgacgaatcagaagcttcaagcagcacttctgaggaacaatatggatctgaaactgttggtgtaatttcttttacaaatgaggatgtgggccgtgaagactggacagattatgcagatccaatccttgaaggtgatatatatggtgagtccgatgttgaagcttccgatgatgatgaggacatatggtgatcatcactacaacaccatgtttaaaatttctcatcagtacctatatcgtgctacctgtatatgtctttgcagatcatagttaaccttgcgttgtgggatgacatgtagttatgtgttttgaaactttgctaaattctgctatctgggggtagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="97988" stop="100026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98288" g_stop="98334" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98335" i_stop="98432" i_length="98">
            <donor d_prob="0.998" d_score="0.91"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98433" g_stop="98557" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="172" r_length="125" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="98558" i_stop="98968" i_length="411">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="98969" g_stop="99053" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="257" r_length="85" r_score="0.941"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="331" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="99314" g_stop="99726" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="747" r_length="416" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E612811" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98288" e_stop="98334"/>
          <exon e_start="98433" e_stop="98557"/>
          <exon e_start="98969" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
          <exon e_start="99314" e_stop="99726"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGAGTAAGTGTTTTTGTAATTACATGCTAGCTTCATAAGTTACTGTCGCATGTGTTATCTTTTTCCTTCACAAATGAAAAAGAGATGGTTTTATGACATTGATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAGGTTTCTATATTGCTTCTTCCCTTTTCCAGGGATTTGTTTTCAAATTCAATCTCATGATTTGCTCCCCCCCCCCCCCCTCCCCCCCAGCGCAAGGGAATCCCTATAAGCTATAGATTGCTCTGTGAAGTTTTTATCAACTTGACAAATTTCATTAACGTATTTATGTTCTGAAACAAGATGAAATGGTAAAAAATCTAGCTTATCATCACTGGCCATTTCAGCCATGCTTCTAGGGAAGGTACTCTAGCTAGAGTTCTGCATTCATTCCTAACCAATCGAATTTTGAATGCTTTCCGTTCCTGAGTCTCTGGAAGAATTACTATTGTGAATTTGGCCAAATGGGCACTGGAGCTTGCTGTCTGTTGTCATTTTTATGTGAGTTTATTGAAGGTTATGCTAATTCCTGTGCAGCATCTTCAGATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTG-AAC-TTGCT-AATTCTGCTATCT-GATGTAGT</genome_strand>
        <mrna_strand>GTTATTCGTGTTGATACTGAAGAAAAAAGCCATGAAGTGCAAGAGGA..................................................................................................ATGCAGGACTACCGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTCTCGAAACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCAGATGGTTATGTTTATGACTATTATACTGTTAAGAATGATACCAACCCTGACGAGGATATTGCTAGCCCTTTTCCATT......................................................................................GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTATCCGGATGAAGAGGAATCTGAAGATGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATATGGATCTGAAACTGTTGGTGTAATTTCTTTTACAAATGAGGATGTGGGCCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGGTGATATATATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGACATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATATCGTGC-TACCTGTATATGTCTTTGCAGATCATAGTTAACCTTGCGTTGTGGGATGACATGTAGTTATGTGTTTTGAAACTTTGCTAAATTCTGCTATCTGGGGGTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E544921" ref_strand="+" ref_description="SGN-E544921 [TUS-67-I2](-)">
      <seq>agtcatgccaagtgctgctgaagaaattgtgtcagagattcttaattacgtagtgacacaagcatcttcagatggttacgtttatggactattatgctgttaagattgataacagccttgatgaggatattgcttgcccttttccatcggtacaagttgatgaagatgatgattgctatgacggccctgatcattcagactaggaatgtgatgattccaatgctgaacataatccctggaatgattccccgggcgaagaggaatctgaagacgaggatgaaacccaggcatcaaatgtcgaatcagaagcttcaagcagcacttatgaggaacaatttggatctgaaactgttggtgtaatttcttttaaaactgaggatgtggaccgtgaagactggacagattatgcagatccaatccttgaagatgatatgtatggtgagtccgatgttgaagcttccgatgatgatgaggatatatggtgatcatcactacaacaccatgtttaaaatttctcatcagtacgtatgtcgtgcatccctgtatatgtctttgcagatcatcgttaaccttgctttgtgtgataacatgtagttatgtgttttgaacttgctaattctgctatctgatgtagtggtgaatggcatgttgttatgtcattgggcaaagatcttttcccgagcttttggttttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98196" stop="100094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98496" g_stop="98557" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98558" i_stop="98968" i_length="411">
            <donor d_prob="0.935" d_score="0.94"/>
            <acceptor a_prob="0.840" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="98969" g_stop="99053" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="148" r_length="86" r_score="0.918"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="222" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="99314" g_stop="99795" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="703" r_length="481" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E544921" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E544921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98496" e_stop="98557"/>
          <exon e_start="98969" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
          <exon e_start="99314" e_stop="99795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAGGTTTCTATATTGCTTCTTCCCTTTTCCAGGGATTTGTTTTCAAATTCAATCTCATGATTTGCTCCCCCCCCCCCCCCTCCCCCCCAGCGCAAGGGAATCCCTATAAGCTATAGATTGCTCTGTGAAGTTTTTATCAACTTGACAAATTTCATTAACGTATTTATGTTCTGAAACAAGATGAAATGGTAAAAAATCTAGCTTATCATCACTGGCCATTTCAGCCATGCTTCTAGGGAAGGTACTCTAGCTAGAGTTCTGCATTCATTCCTAACCAATCGAATTTTGAATGCTTTCCGTTCCTGAGTCTCTGGAAGAATTACTATTGTGAATTTGGCCAAATGGGCACTGGAGCTTGCTGTCTGTTGTCATTTTTATGTGAGTTTATTGAAGGTTATGCTAATTCCTGTGCAGCATCTTCAGATGGTTACGTTTAT-GACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAAT</genome_strand>
        <mrna_strand>AGTCATGCCAAGTGCTGCTGAAGAAATTGTGTCAGAGATTCTTAATTACGTAGTGACACAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTCAGATGGTTACGTTTATGGACTATTATGCTGTTAAGATTGATAACAGCCTTGATGAGGATATTGCTTGCCCTTTTCCATC......................................................................................GGTACAAGTTGATGAAGATGATGATTGCTATGACGGCCCTGATCATTCAGACTAGGAATGTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTCCCCGGGCGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGTCGAATCAGAAGCTTCAAGCAGCACTTATGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACGTATGTCGTGCATCCCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTG-GTTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414307" ref_strand="-" ref_description="SGN-E414307 [STM-19-E20]">
      <seq>gatattgcttgcccttttccattggtacaagttgatgaagatgatgattactatgacggccctgatcattcagactatgagtctgatgattccaatgctgaacataatccctggaatgattatccggatgaagaggaatctgaagatgaggatgaaacccaggcatcaaatgatgaatcagaagcttcaagcagcacttctgaggaacaatatggatctgaaactgttggtgtaatttcttttacaaatgaggatgtgggccgtgaagactggacagattatgcagatccaatccttgaaggtgatatgtatggtgagtccgatgttgaagcttccgatgatgatgaggacatatggtgatcatcactacaacaccattgtttaaaatttctcatcagtacctatatcgtgcatacctgtatatgtctttgcagatcatagttaaccatgcgttgtgggatgacatgtagttatgtgttttgaactttgctaattctgctatctggggtagtggtgaatggcatgtggttaagtcattgggcaaagatcttttcccaagctttcgcatttctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98731" stop="100088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99031" g_stop="99053" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99140" g_stop="99213" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="97" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="99314" g_stop="99788" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="574" r_length="477" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E414307" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414307" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99031" e_stop="99053"/>
          <exon e_start="99140" e_stop="99213"/>
          <exon e_start="99314" e_stop="99788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATTGCTTGCCCTTTTCCATTGTAAGGATTCGTACAACAAATAACTTTCTTCATATGCTATCTTAACTTTTCAGCTCTTACTTAAATAGTTGATGTGGTTGTTTTAGGGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCA-TGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAAC-TTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAA</genome_strand>
        <mrna_strand>GATATTGCTTGCCCTTTTCCATT......................................................................................GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTATGAGTCTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTATCCGGATGAAGAGGAATCTGAAGATGAGGATGAAACCCAGGCATCAAATGATGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATATGGATCTGAAACTGTTGGTGTAATTTCTTTTACAAATGAGGATGTGGGCCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGGTGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGACATATGGTGATCATCACTACAACACCATTGTTTAAAATTTCTCATCAGTACCTATATCGTGCATACCTGTATATGTCTTTGCAGATCATAGTTAACCATGCGTTGTGGGATGACATGTAGTTATGTGTTTTGAACTTTGCTAATTCTGCTATCTGGGGTAGTGGTGAATGGCATGTGGTTAAGTCATTGGGCAAAGATCTTTTCCCAAGCTTTCGCATTTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E462290" ref_strand="+" ref_description="SGN-E462290 [cPRO-11-A4]">
      <seq>atgaagatgatgattactatgacggccctgatcattcagactacgaatctgatgattccaatgctgaacataatccctggaatgattatccggatgaagaggaatctgaagatgaggatgaaacccaggcatcaaatgacgaatcagaagcttcaagcagcacttctgaggaacaatatggatctgaaactgttggtgtaatttcttttacaaatgaggatgtgggccgtgaagactggacagattatgcagatccaatccttgacagtgatatatatggggaagccgattgtgaagcttccgatgatgatgacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="98851" stop="99863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99151" g_stop="99213" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="99314" g_stop="99563" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="313" r_length="250" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E462290" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>313</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99151" e_stop="99213"/>
          <exon e_start="99314" e_stop="99563"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATGGTCATCTCTCTTGCCTTTCCACCCCGTTTTAGTATCATTTGTTATTTTTTAAGGTACTTTTTTGTTAGAACTGTTTTGATATTCAAGTTTTCTTTTTCAGCTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGA</genome_strand>
        <mrna_strand>ATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG....................................................................................................CTGAACATAATCCCTGGAATGATTATCCGGATGAAGAGGAATCTGAAGATGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATATGGATCTGAAACTGTTGGTGTAATTTCTTTTACAAATGAGGATGTGGGCCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGACAGTGATATATATGGGGAAGCCGATTGTGAAGCTTCCGATGATGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346219" ref_strand="+" ref_description="SGN-E346219 [cTOF-23-M23]">
      <seq>tgaagactggacagattatgcagatccaatccttgaagatgatatgtatggtgagtccgatgttgaagcttcggatgatgatgaggatatatggtgatcatcactacaacaccatgtttaaaatttctcatcagtacctatgtcgtgcatacctgtatatgtctttgcagatcatcgttaaccttgctttgtgtgataacatgtagttatgtgttttgaacttgctaattctgctatctgatgtagtggtgaatggcatgttgttatgtcattgggcaaagatcttttcccgagcttttgcgtttttaaaactaatttgccagtattgtaaatctcagccgggtttgcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99180" stop="100132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99480" g_stop="99841" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E346219" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99480" e_stop="99841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTACATCTCAACTG</genome_strand>
        <mrna_strand>TGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCGGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346456" ref_strand="+" ref_description="SGN-E346456 [cTOF-23-J21]">
      <seq>tgaagactggacagattatgcagatccaatccttgaagatgatatgtatggtgagtccgatgttgaagcttcggatgatgatgaggatatatggtgatcatcactacaacaccatgtttaaaatttctcatcagtacctatgtcgtgcatacctgtatatgtctttgcagatcatcgttaaccttgctttgtgtgataacatgtagttatgtgttttgaacttgctaattctgctatctgatgtagtggtgaatggcatgttgttatgtcattgggcaaagatcttttcccgagcttttgcgtttttaaaactaatttgccagtattgtaaatctcagccgggtttgcctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="99180" stop="100132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99480" g_stop="99841" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E346456" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>362</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99480" e_stop="99841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTACATCTCAACTG</genome_strand>
        <mrna_strand>TGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCGGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309480" ref_strand="+" ref_description="SGN-E309480 [cTOA-2-I22]">
      <seq>taaattcattatcgtattggcatgtattttcactcacttttttagctggaaacagtatttgttggatcaatactgtatcgtacatcgtatcgattcagaatttccctttagatagacaaattgcagttggaatatcaactagttatataagtttaagcgctaagattgttactgatatagttgatgttgttaacgtttacgccccgagtaaaagggctgaaacttatctattgatgaactctgttttacccctgtttttcgccattgttgttgctccagtgattcgggagatgaaaattgataaatcgaggaagttatcacatggattccgagttatgtttggtattactatcgcaacggggatttatgctgtgttcaccagcgtaaaacctgcaatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="107723" stop="108722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108023" g_stop="108422" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E309480" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108023" e_stop="108422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATTCATTATCGTATTGGCATGTATTTTCACTCACTTTTTTAGCTGGAAACAGTATTTGTTGGATCAATACTGTATCGTACATCGTATCGATTCAGAATTTCCCTTTAGATAGACAAATTGCAGTTGGAATATCAACTAGTTATATAAGTTTAAGCGCTAAGATTGTTACTGATATAGTTGATGTTGTTAACGTTTACGCCCCGAGTAAAAGGGCTGAAACTTATCTATTGATGAACTCTGTTTTACCCCTGTTTTTCGCCATTGTTGTTGCTCCAGTGATTCGGGAGATGAAAATTGATAAATCGAGGAAGTTATCAGATGGATTCCGAGTTATGTTTGTTATTACTATCGCAACGGGGATTTATGCTGTGTTCACCAGCGTAAAACCTGCAATTTC</genome_strand>
        <mrna_strand>TAAATTCATTATCGTATTGGCATGTATTTTCACTCACTTTTTTAGCTGGAAACAGTATTTGTTGGATCAATACTGTATCGTACATCGTATCGATTCAGAATTTCCCTTTAGATAGACAAATTGCAGTTGGAATATCAACTAGTTATATAAGTTTAAGCGCTAAGATTGTTACTGATATAGTTGATGTTGTTAACGTTTACGCCCCGAGTAAAAGGGCTGAAACTTATCTATTGATGAACTCTGTTTTACCCCTGTTTTTCGCCATTGTTGTTGCTCCAGTGATTCGGGAGATGAAAATTGATAAATCGAGGAAGTTATCACATGGATTCCGAGTTATGTTTGGTATTACTATCGCAACGGGGATTTATGCTGTGTTCACCAGCGTAAAACCTGCAATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538868" ref_strand="+" ref_description="SGN-E538868 [TUS-58-F8]">
      <seq>ctcgagttttttttttttttttttcattcggctaaaaaaatgccatttatatataacacagtacataatcgtttaccaaaatcttttatttacattatataatataataatatatactatacattaacgttacgtcttaccactaaacaatactattacataaatatagctattaatatcctccacgtaaatgtgtataaaatttttgtgttcttctatgaagaataaaagcaagacatgttcctagtgaacaaagacaaccccatataataaaagtttcttgaaaacatttatttcccaaacaactacctagtgaattttctttttttctataaagcatagctgccaaatcaccaaatataaatgaaccaattggtatatttgctaccacaatattgtgattaacaccaaaatttttggtcccaaatagttcagtggtttgtgacactgaaattgaagtgattgctccagtgcaaattccaattatagctgtgctaatataaagtgaaatgtgactattgttgagtagtaaaaagaaagctcctgtcattggtgctagtgttaaacctatcgtagctggtcttgatattgcatatttactcctggagaaaaggtagtcgaagagcgaaggaagaagacgaccaaagaagccgaatgaagatgatagcgaaaccaatgaagaagtttcagtaaatccacgagtatcagcaatttgccccaaattattcaagtaaaccaaacccaatgttccaccaaancaataagcaaaaaatataaccaaaaatccaatttcatcaacattctcttagctccaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="-" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="111906" stop="108346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111601" g_stop="111034" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="590" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111033" i_stop="108873" i_length="2161">
            <donor d_prob="0.777" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="108872" g_stop="108646" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="816" r_length="226" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="22" polyA_stop="6"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="-" ref_id="SGN-E538868" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111601" e_stop="111034"/>
          <exon e_start="108872" e_stop="108646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCGGCTAAAAAAATGCCATTTATATATAACACAGTACATAATCGTTTACCAAAATCTTTTATTTACATTATATAATATAATAATATATACTATACATTAACGTTACGTCTTACCACTAAACAATACTATTACATAAATATAGCTATTAATATCCTCCACGTAAATGTGTATAAAATTTTTGTGTTCTTCTATGAAGAATAAAAGCAAGACATGTTCCTAGTGAACAAAGACAACCCCATATAATAAAAGTTTCTTGAAAACATTTATTTCCCAAACAACTACCTAGTGAATTTTCTTTTTTTCTATAAAGCATAGCTGCCAAATCACCAAATATAAATGAACCAATTGGTATATTTGCTACCACAATATTGTGATTAACACCAAAATTTTTGGTCCCAAATAGTTCAGTGGTTTGTGACACTGAAATTGAAGTGATTGCTCCAGTGCAAATTCCAATTATAGCTGTGCTAATATAAAGTGAAATGTGACTATTGTTGAGTAGTAAAAAGAAAGCTCCTGTCATTGGTGCTAGTGTTAAACCTATCGTAGCTGGTCTTGATATTGCATATTTACTCCTGAAATAAATAATAAATCGACGAGTTTTAGTTCTGAGCACTGATAGTACATAAATTTTCTGAATCATCTCACTAAAATTGACATATAATAACGTGTAACTATTCACAGTGGGCCTACATCTCAGGCGGAACCAATAATAGGAGTTTAGGATTCTAAATTAATTTGTTTGGAGTTGACAACTTAATAATATATACAATTTTTTTTAAAAAAAAATTCTAATACAAACATAAGATCTATGAAAAAGCTAGTAAATTCGTCTAAATCCATAAGCCTCCACCTAACTCTGTCACTGACTTGTATTATCCACGATAATCTCATCAATTATTTTTAGCATATGAACTAATGGAGTGACCATGTAAAAAGAATATTTACACTATCAAGTGAAGTAAAGGACAATAAACGGTAACTATATACATCAAAATTATTTTTGGGCCAAGACATGCTTTGAGTATATATATATATTTTTTAGACTAACTAAATAGAAAAGTGTGTCAGTAAATTAAACCATAGAAAATAGATAAAAATAGGTTGAGGTTATCAGCTTCTTAAATTTGTCTGCATATTTCACATAGACATTTCAACTATGACTATAACATATTGAGTACTTTTATTTGTTCATATTAGACATTTTTTCATAATAAGTAAAAAAAATAAAGTGTGTGTAATGCACTTAATGTAATGTGGCAAAATGAGGTGTCTAATCTACCCATTCTGAGACCTAAAAAAATAGTCAGCAAATATACGTATAATATTTTATAACTTGCGTTTTCATCTATATATGCTAATAAACCAAATTAAAAGTCTGTTTGGATTGACTTAAAATAGTAGTTTTTAAGTTAAAAATAAAAAATCAAACTTAAATAATTTTCAAGTCAAAAAATAAAAGCTAAGGGAAGACTTACTTTTGATTTCCGACTTATTTTAAGTCATTTTTTACTTTATCAAACACTTCGTAACTTATTTTAAGTCATGTTTGATTTATTTTTTATATTATTCAAACATTTTTCAAAATTAAAAAATTAATTTAAAAATAGATTTGATCGACTTTTTAACCAATCTAGACGAGCTTTAAATCTCATGTCAAGTATAATTTGATTTGACATTTGTGTTGCTTAAAGCCAGGCAATTTCAAATTAATATTTGTGTTTAATATATAATTTGATTTGACATTTGTGTTGCTTAAAGCCGGGCAATTTCAAATTAATATGTGTTTAATATAAGAACACGAAGTATATGTACCATATAAGACTAGCTAATATATACTTAAGCTGATTTTTATATAGTGAATTAAATGCATGAAAATACTTGGTCTAAAATATTTAGAAGAAAAAATAAAATGAATGGTGATGATTATATTTGGGTTTTCTGATATTAATTATCACACACAAATTAATGTCACCATAACAAGCGGCTCCATAAATTTTACTACAACCAACTATTAACATTCTTTCAAGAATTGCTTTTGCATTAAAAGCATTAAAACTACTGACAACAAGTATGGTGTAATAGTGCCCATCATTTTTCTACTCTTGTTTTCAGATTTTATCTTCCAAAATTAATGGAACTTTGGGTATGGAACGTTTATGTTTAAATGGACCATACTATGACTTCATGACGTAAATCAAAAATCTAAGGATACTCTTAGTATAGTATGTATTATGTTATTGTCTGCTATGGATCAATCTCGTATTATTTTCTCCTAAAGACATCATACGATTAAGAGTGTTCATCAGCTTATAAGGAGATCATTTTTCTTTTTTACTACCAATGACTTGTTCACATACACCTGGATGTATGTATTTTTTCAGCTACAACTAAAGATAAAACAACTCCTAGATAGACCTAATGCACGGCCTCTATACTTATCTTATCAAATTATTGATTCAGATGCCCTTTGTTAGGTTAAAACAACTCAAGGATACTCTAAATTTAATGTGATATTAACATAATTTTCCTCATTAGACCTCACGCCATTTATAATATCCAACACTTTATAAATAGCATACTTTTTTTTCTCATCTATTAATACAAGACTGACTTATATAAACCTTTAATATTCTTAGCTAATTTTTTTTTAGTTCATTATCTAGTAAGGCCCCAAAAATGTAAAATTAATTAAATCAGCAAATTTTGAATAAATATGTAAAGAGAAATTTGCACCTGGAGAAAAGGTAGTCGAAGAGCGAAGGAAGAAGACGACCAAAGAAGCCGAATGAAGATGATAGCGAAACCAATGAAGAAGTTTCAGTAAATCCACGAGTATCAGCAATTTGCCCCAAATTATTCAAGTAAACCAAACCCAATGTTCCACCAAACAAATAAGCAAAAAAATATAACCAAAAATCCAATTTCATCAACATTCTCTTAGCTCCAAT</genome_strand>
        <mrna_strand>TTCATTCGGCTAAAAAAATGCCATTTATATATAACACAGTACATAATCGTTTACCAAAATCTTTTATTTACATTATATAATATAATAATATATACTATACATTAACGTTACGTCTTACCACTAAACAATACTATTACATAAATATAGCTATTAATATCCTCCACGTAAATGTGTATAAAATTTTTGTGTTCTTCTATGAAGAATAAAAGCAAGACATGTTCCTAGTGAACAAAGACAACCCCATATAATAAAAGTTTCTTGAAAACATTTATTTCCCAAACAACTACCTAGTGAATTTTCTTTTTTTCTATAAAGCATAGCTGCCAAATCACCAAATATAAATGAACCAATTGGTATATTTGCTACCACAATATTGTGATTAACACCAAAATTTTTGGTCCCAAATAGTTCAGTGGTTTGTGACACTGAAATTGAAGTGATTGCTCCAGTGCAAATTCCAATTATAGCTGTGCTAATATAAAGTGAAATGTGACTATTGTTGAGTAGTAAAAAGAAAGCTCCTGTCATTGGTGCTAGTGTTAAACCTATCGTAGCTGGTCTTGATATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATTTACTCCTGGAGAAAAGGTAGTCGAAGAGCGAAGGAAGAAGACGACCAAAGAAGCCGAATGAAGATGATAGCGAAACCAATGAAGAAGTTTCAGTAAATCCACGAGTATCAGCAATTTGCCCCAAATTATTCAAGTAAACCAAACCCAATGTTCCACCAAANCAATAAGC-AAAAAATATAACCAAAAATCCAATTTCATCAACATTCTCTTAGCTCCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E278798" ref_strand="-" ref_description="SGN-E278798 [cLER-2-F5]">
      <seq>caatttcagtgtcacaaaccactgaactatttgggaccaaaaattttggtgttaatcacaatattgtggtagcaaatataccaattggttcatttatatttggtgatttggcagctatgctttatagaaaaaaagaaaattcactaggtagttgtttgggaaataaatgttttcaagaaacttttattatatggggttgtctttgttcactaggaacatgtcttgcttttattcttcatagaagaacacaaaaattttatacacatttacgtggaggatattaatagctatatttatgtaatagtattgtttagtggtaagacgtaacgttaatgtatagtatatattattatattatataatgtaaataaaagattttggtaaacgattatgtactgtgttatatataaatggcatttttttagccgaatgaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C06SLm0106A20-4oSrf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C06SLm0106A20.1" temp_strand="+" temp_description="C06SLm0106A20.1  AC232864.1 htgs_phase:1 submitted_to_sgn_as:C06SLm0106A20 sequenced_by:cbsg upload_account_name:netherlands [organism=Solanum lycopersicum]">
        <position start="110868" stop="111906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111168" g_stop="111600" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="451"/>
      <MATCH_line gen_id="C06SLm0106A20.1" gen_strand="+" ref_id="SGN-E278798" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C06SLm0106A20.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278798" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111168" e_stop="111600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTCAGTGTCACAAACCACTGAACTATTTGGGACCAAAAATTTTGGTGTTAATCACAATATTGTGGTAGCAAATATACCAATTGGTTCATTTATATTTGGTGATTTGGCAGCTATGCTTTATAGAAAAAAAGAAAATTCACTAGGTAGTTGTTTGGGAAATAAATGTTTTCAAGAAACTTTTATTATATGGGGTTGTCTTTGTTCACTAGGAACATGTCTTGCTTTTATTCTTCATAGAAGAACACAAAAATTTTATACACATTTACGTGGAGGATATTAATAGCTATATTTATGTAATAGTATTGTTTAGTGGTAAGACGTAACGTTAATGTATAGTATATATTATTATATTATATAATGTAAATAAAAGATTTTGGTAAACGATTATGTACTGTGTTATATATAAATGGCATTTTTTTAGCCGAATGA</genome_strand>
        <mrna_strand>CAATTTCAGTGTCACAAACCACTGAACTATTTGGGACCAAAAATTTTGGTGTTAATCACAATATTGTGGTAGCAAATATACCAATTGGTTCATTTATATTTGGTGATTTGGCAGCTATGCTTTATAGAAAAAAAGAAAATTCACTAGGTAGTTGTTTGGGAAATAAATGTTTTCAAGAAACTTTTATTATATGGGGTTGTCTTTGTTCACTAGGAACATGTCTTGCTTTTATTCTTCATAGAAGAACACAAAAATTTTATACACATTTACGTGGAGGATATTAATAGCTATATTTATGTAATAGTATTGTTTAGTGGTAAGACGTAACGTTAATGTATAGTATATATTATTATATTATATAATGTAAATAAAAGATTTTGGTAAACGATTATGTACTGTGTTATATATAAATGGCATTTTTTTAGCCGAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>133</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="4834" PGL_stop="6197"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4834" e_stop="6197"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4834" e_stop="6197" e_length="1364"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4834" stop="5477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4834" stop="5323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4834" stop="5286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4834" stop="5062"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4835" stop="5495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4835" stop="5402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268295" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4856" stop="5476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4856" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4857" stop="5096"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4859" stop="5263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4884" stop="5647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4884" stop="5543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4884" stop="5499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4930" stop="5477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4931" stop="5525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5492" stop="6197"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5697" stop="6136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5700" stop="6136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5725" stop="6147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398373" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTACACCAGTATACTGTATAGTTTTTCTCTCTCTTTAATTTTTCTGAATTCATCAAAAATAAAAAAAATTCTCATCATCACACATTCAGTGTATCCTTAAGTCGCATCATCATCTATCAAACTTTGAAAAAATTCAAAGTAATCCATTATTTCACTGTATCGTTTTCTCAAAGAGTTGCTTCAAATTGTAGAAACAAAGAGGGTAAATTGGAATCAATTTTCGCCTTGTTGTGTAAGGTTTTCTTTTCGATTTGATTTGATTTGATTTTGAATTTGAATGTGTTCCACTTCCTCGTATATAACAATTTTGAGTGATGGTGACTACCTGGGTTTGAGTTAGACAAGCAAAAAGAAACCGGTCTGTCTATCTAGTATTCAGTACTAGTAAAATAGATGCAATATAATTGCGAGGCGATCGAGTTTTTTCTCTTAGCTAACTGTCAGACAACGATGTAAAAGCTCCATTTTGGGGTTTTAGAAGACACTAATCATCAGTGGAGTTAGTAATTGGAATTATCAATATATTTTATTCTCATAAATTCTAGCATTTTATGGATTCAACATCTAGAGTTGAACAACCCGACCCAAACATTGTCGGTAGCAGCGAAGGAGGTACAGGTACATCATCAGCAAGCGCTGTGACGGAGGGGGGACAGTCAACAACGGTGTCTGCAGCACCGCCAAGTCGATACGAGTCACAGAAACGTCGAGATTGGAATACTTTTTTACAGTACTTAAGGAACCACAAACCGCCATTAACCCTAGCCCGCTGCAGCGGAGCTCACGTGATCGAGTTCCTTAAGTACCTTGATCAATTTGGGAAAACAAAAGTGCACGTGACCGGGTGCCCGTATTTCGGGCACCCAAATCCACCCGCACCTTGTGCGTGTCCGTTAAAACAGGCTTGGGGTAGCCTTGATGCACTAATTGGAAGGCTAAGAGCTGCTTATGAAGAAAATGGGGGAAAACCTGAATCAAATCCATTTGGTGCCAAAGCTGTTAGAATTTATTTAAGGGAAGTTAGAGAAAGTCAAGCAAAAGCTAGAGGAATTCCTTATGAAAAGAAGAAACGTAAACGGCCCAGTACATCCAGTTCGGTCGCGACAGCTGGAAGTGCTGTCGCGGCAGAAGGAGGAAGTAGTAGTGGTGGTGGTGATGGCAGTGGCGGAGACGGTGTTATTGGTCAACAACCACCTACTGATCCTAATACAACAGTATAGTATAATACTATTCATTTTCAATTTTAAGTTTAGTTAGTAATTGTGAATTACTTGAATCTTATATGACGCGAATTCAAATTTAGTTCTGATCACATTTGTTTTACTAAAATATATATAGTAACAATTGAATTATCATTCATCTG</gDNA_template>
            <first_frame> I  T  P  V  Y  C  I  V  F  L  S  L  *  F  F  *  I  H  Q  K  *  K  K  F  S  S  S  H  I  Q  C  I  L  K  S  H  H  H  L  S  N  F  E  K  I  Q  S  N  P  L  F  H  C  I  V  F  S  K  S  C  F  K  L  *  K  Q  R  G  *  I  G  I  N  F  R  L  V  V  *  G  F  L  F  D  L  I  *  F  D  F  E  F  E  C  V  P  L  P  R  I  *  Q  F  *  V  M  V  T  T  W  V  *  V  R  Q  A  K  R  N  R  S  V  Y  L  V  F  S  T  S  K  I  D  A  I  *  L  R  G  D  R  V  F  S  L  S  *  L  S  D  N  D  V  K  A  P  F  W  G  F  R  R  H  *  S  S  V  E  L  V  I  G  I  I  N  I  F  Y  S  H  K  F  *  H  F  M  D  S  T  S  R  V  E  Q  P  D  P  N  I  V  G  S  S  E  G  G  T  G  T  S  S  A  S  A  V  T  E  G  G  Q  S  T  T  V  S  A  A  P  P  S  R  Y  E  S  Q  K  R  R  D  W  N  T  F  L  Q  Y  L  R  N  H  K  P  P  L  T  L  A  R  C  S  G  A  H  V  I  E  F  L  K  Y  L  D  Q  F  G  K  T  K  V  H  V  T  G  C  P  Y  F  G  H  P  N  P  P  A  P  C  A  C  P  L  K  Q  A  W  G  S  L  D  A  L  I  G  R  L  R  A  A  Y  E  E  N  G  G  K  P  E  S  N  P  F  G  A  K  A  V  R  I  Y  L  R  E  V  R  E  S  Q  A  K  A  R  G  I  P  Y  E  K  K  K  R  K  R  P  S  T  S  S  S  V  A  T  A  G  S  A  V  A  A  E  G  G  S  S  S  G  G  G  D  G  S  G  G  D  G  V  I  G  Q  Q  P  P  T  D  P  N  T  T  V  *  Y  N  T  I  H  F  Q  F  *  V  *  L  V  I  V  N  Y  L  N  L  I  *  R  E  F  K  F  S  S  D  H  I  C  F  T  K  I  Y  I  V  T  I  E  L  S  F  I   </first_frame>
            <second_frame>  L  H  Q  Y  T  V  *  F  F  S  L  F  N  F  S  E  F  I  K  N  K  K  N  S  H  H  H  T  F  S  V  S  L  S  R  I  I  I  Y  Q  T  L  K  K  F  K  V  I  H  Y  F  T  V  S  F  S  Q  R  V  A  S  N  C  R  N  K  E  G  K  L  E  S  I  F  A  L  L  C  K  V  F  F  S  I  *  F  D  L  I  L  N  L  N  V  F  H  F  L  V  Y  N  N  F  E  *  W  *  L  P  G  F  E  L  D  K  Q  K  E  T  G  L  S  I  *  Y  S  V  L  V  K  *  M  Q  Y  N  C  E  A  I  E  F  F  L  L  A  N  C  Q  T  T  M  *  K  L  H  F  G  V  L  E  D  T  N  H  Q  W  S  *  *  L  E  L  S  I  Y  F  I  L  I  N  S  S  I  L  W  I  Q  H  L  E  L  N  N  P  T  Q  T  L  S  V  A  A  K  E  V  Q  V  H  H  Q  Q  A  L  *  R  R  G  D  S  Q  Q  R  C  L  Q  H  R  Q  V  D  T  S  H  R  N  V  E  I  G  I  L  F  Y  S  T  *  G  T  T  N  R  H  *  P  *  P  A  A  A  E  L  T  *  S  S  S  L  S  T  L  I  N  L  G  K  Q  K  C  T  *  P  G  A  R  I  S  G  T  Q  I  H  P  H  L  V  R  V  R  *  N  R  L  G  V  A  L  M  H  *  L  E  G  *  E  L  L  M  K  K  M  G  E  N  L  N  Q  I  H  L  V  P  K  L  L  E  F  I  *  G  K  L  E  K  V  K  Q  K  L  E  E  F  L  M  K  R  R  N  V  N  G  P  V  H  P  V  R  S  R  Q  L  E  V  L  S  R  Q  K  E  E  V  V  V  V  V  V  M  A  V  A  E  T  V  L  L  V  N  N  H  L  L  I  L  I  Q  Q  Y  S  I  I  L  F  I  F  N  F  K  F  S  *  *  L  *  I  T  *  I  L  Y  D  A  N  S  N  L  V  L  I  T  F  V  L  L  K  Y  I  *  *  Q  L  N  Y  H  S  S  </second_frame>
            <third_frame>   Y  T  S  I  L  Y  S  F  S  L  S  L  I  F  L  N  S  S  K  I  K  K  I  L  I  I  T  H  S  V  Y  P  *  V  A  S  S  S  I  K  L  *  K  N  S  K  *  S  I  I  S  L  Y  R  F  L  K  E  L  L  Q  I  V  E  T  K  R  V  N  W  N  Q  F  S  P  C  C  V  R  F  S  F  R  F  D  L  I  *  F  *  I  *  M  C  S  T  S  S  Y  I  T  I  L  S  D  G  D  Y  L  G  L  S  *  T  S  K  K  K  P  V  C  L  S  S  I  Q  Y  *  *  N  R  C  N  I  I  A  R  R  S  S  F  F  S  *  L  T  V  R  Q  R  C  K  S  S  I  L  G  F  *  K  T  L  I  I  S  G  V  S  N  W  N  Y  Q  Y  I  L  F  S  *  I  L  A  F  Y  G  F  N  I  *  S  *  T  T  R  P  K  H  C  R  *  Q  R  R  R  Y  R  Y  I  I  S  K  R  C  D  G  G  G  T  V  N  N  G  V  C  S  T  A  K  S  I  R  V  T  E  T  S  R  L  E  Y  F  F  T  V  L  K  E  P  Q  T  A  I  N  P  S  P  L  Q  R  S  S  R  D  R  V  P  *  V  P  *  S  I  W  E  N  K  S  A  R  D  R  V  P  V  F  R  A  P  K  S  T  R  T  L  C  V  S  V  K  T  G  L  G  *  P  *  C  T  N  W  K  A  K  S  C  L  *  R  K  W  G  K  T  *  I  K  S  I  W  C  Q  S  C  *  N  L  F  K  G  S  *  R  K  S  S  K  S  *  R  N  S  L  *  K  E  E  T  *  T  A  Q  Y  I  Q  F  G  R  D  S  W  K  C  C  R  G  R  R  R  K  *  *  W  W  W  *  W  Q  W  R  R  R  C  Y  W  S  T  T  T  Y  *  S  *  Y  N  S  I  V  *  Y  Y  S  F  S  I  L  S  L  V  S  N  C  E  L  L  E  S  Y  M  T  R  I  Q  I  *  F  *  S  H  L  F  Y  *  N  I  Y  S  N  N  *  I  I  I  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5380" stop="6054"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>672</number_coding_nucleotides>
                  <number_encoded_amino_acids>224</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFMDSTSRVEQPDPNIVGSSEGGTGTSSASAVTEGGQSTTVSAAPPSRYESQKRRDWNTFLQYLRNHKPPLTLARCSGAHVIEFLKYLDQFGKTKVHVTGCPYFGHPNPPAPCACPLKQAWGSLDALIGRLRAAYEENGGKPESNPFGAKAVRIYLREVRESQAKARGIPYEKKKRKRPSTSSSVATAGSAVAAEGGSSSGGGDGSGGDGVIGQQPPTDPNTTV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4856" stop="5089"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFSLFNFSEFIKNKKNSHHHTFSVSLSRIIIYQTLKKFKVIHYFTVSFSQRVASNCRNKEGKLESIFALLCKVFFSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6160" PGL_stop="5716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6160" e_stop="5716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.955">
            <gDNA_exon_boundary e_start="6160" e_stop="5716" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6160" stop="5716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E428539" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGTAAAACAAATGTGATCAGAACTAAATTTGAATTCGCGTCATATAAGATTCAAGTAATTCACAATTACTAACTAAACTTAAAATTGAAAATGAATAGTATTATACTATACTGTTGTATTAGGATCAGTAGGTGGTTGTTGACCAATAACACCGTCTCCGCCACTGCCATCACCACCACCACTACTACTTCCTCCTTCTGCCGCGACAGCACTTCCAGCTGTCGCGACCGAACTGGATGTACTGGGCCGTTTACGTTTCTTCTTTTCATAAGGAATTCCTCTAGCTTTTGCTTGACTTTCTCTAACTTCCCTTAAATAAATTCTAACAGCTTTGGCACCAAATGGATTTGATTCAGGTTTTCCCCCATTTTCTTCATAAGCAGCTCTTAGCCTTCCAATTAGTGCATCAAGGCTACCCCAAGCCTGTTTTAACGGACACGCACA</gDNA_template>
            <first_frame> *  *  N  K  C  D  Q  N  *  I  *  I  R  V  I  *  D  S  S  N  S  Q  L  L  T  K  L  K  I  E  N  E  *  Y  Y  T  I  L  L  Y  *  D  Q  *  V  V  V  D  Q  *  H  R  L  R  H  C  H  H  H  H  H  Y  Y  F  L  L  L  P  R  Q  H  F  Q  L  S  R  P  N  W  M  Y  W  A  V  Y  V  S  S  F  H  K  E  F  L  *  L  L  L  D  F  L  *  L  P  L  N  K  F  *  Q  L  W  H  Q  M  D  L  I  Q  V  F  P  H  F  L  H  K  Q  L  L  A  F  Q  L  V  H  Q  G  Y  P  K  P  V  L  T  D  T  H  </first_frame>
            <second_frame>  S  K  T  N  V  I  R  T  K  F  E  F  A  S  Y  K  I  Q  V  I  H  N  Y  *  L  N  L  K  L  K  M  N  S  I  I  L  Y  C  C  I  R  I  S  R  W  L  L  T  N  N  T  V  S  A  T  A  I  T  T  T  T  T  T  S  S  F  C  R  D  S  T  S  S  C  R  D  R  T  G  C  T  G  P  F  T  F  L  L  F  I  R  N  S  S  S  F  C  L  T  F  S  N  F  P  *  I  N  S  N  S  F  G  T  K  W  I  *  F  R  F  S  P  I  F  F  I  S  S  S  *  P  S  N  *  C  I  K  A  T  P  S  L  F  *  R  T  R  T </second_frame>
            <third_frame>   V  K  Q  M  *  S  E  L  N  L  N  S  R  H  I  R  F  K  *  F  T  I  T  N  *  T  *  N  *  K  *  I  V  L  Y  Y  T  V  V  L  G  S  V  G  G  C  *  P  I  T  P  S  P  P  L  P  S  P  P  P  L  L  L  P  P  S  A  A  T  A  L  P  A  V  A  T  E  L  D  V  L  G  R  L  R  F  F  F  S  *  G  I  P  L  A  F  A  *  L  S  L  T  S  L  K  *  I  L  T  A  L  A  P  N  G  F  D  S  G  F  P  P  F  S  S  *  A  A  L  S  L  P  I  S  A  S  R  L  P  Q  A  C  F  N  G  H  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6087" stop="5845"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLKLKMNSIILYCCIRISRWLLTNNTVSATAITTTTTTSSFCRDSTSSCRDRTGCTGPFTFLLFIRNSSSFCLTFSNFP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14503" PGL_stop="17969"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15360" e_stop="15530"/>
            <exon e_start="15804" e_stop="15954"/>
            <exon e_start="16038" e_stop="16119"/>
            <exon e_start="17224" e_stop="17927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15360" e_stop="15530" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15531" i_stop="15803" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15804" e_stop="15954" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16038" e_stop="16119" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17224" e_stop="17927" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15360" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15435" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15900" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15911" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAA : GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA : ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG : CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATT</gDNA_template>
            <first_frame> R  N  T  G  G  G  Y  G  S  S  P  A  E  A  P  V  K  V  K  Q  C  D  E  N  C  G  D  L  C  D  N  A  R  I  Y  I  S  N  L  P  P  D  V  T  V  E  E  L  R  E  L  F  G  S  I  G  Q  :  V  A  R  I  K  Q  K  R  G  Y  K  D  Q  W  P  W  S  I  K  L  Y  T  D  D  Q  G  N  N  K  G  D  A  V  L  S  Y  E  D  P  S  A  A  H  S  A  G  G  F  F  N   : N  H  D  F  R  G  Y  K  I  T  V  A  M  A  E  K  S  A  P  K  P  P  P  A  F  G  S  G :   R  G  G  R  G  G  Y  G  G  G  G  G  G  R  R  D  N  Y  R  D  G  G  G  S  G  P  D  R  Q  F  H  G  G  N  R  S  R  P  Y  *  V  P  V  E  H  F  M  Y  *  N  L  W  W  E  G  F  L  V  S  S  I  S  R  Y  T  L  C  D  L  K  E  V  G  C  *  L  T  S  I  *  A  I  S  T  F  S  S  F  F  L  L  L  G  V  A  *  G  V  G  F  S  S  S  E  P  F  L  I  C  *  M  F  *  *  R  R  L  D  I  L  Q  I  A  A  K  V  G  E  I  F  R  *  V  L  L  L  W  K  T  D  Y  S  G  N  L  S  *  M  M  F  G  L  F  K  *  F  C  L  H  F  G  N  A  S  I  S  A  L  D  P  L  Y  N  E  F  V  S  Y  M  M  L  L  L  I  T  C  T  V  F  F  Y  C  V  S  A  S  S  V  S  L  P  W  K  N  M  E  D  K  S  L  V  L  N  T  F  F  S  M  N  G  G  V  Q  W  *  S  T  W  *  F  N  C  R  D  </first_frame>
            <second_frame>  G  I  Q  E  V  V  M  V  V  L  Q  L  R  L  R  *  R  S  S  N  A  M  R  I  V  E  I  S  V  T  T  Q  E  Y  I  S  Q  I  C  L  L  M  *  P  S  K  N  L  E  N  F  L  G  A  L  D  K :   L  Q  E  S  S  K  N  E  V  T  K  T  S  G  L  G  A  *  S  Y  T  Q  T  I  K  E  I  T  K  E  M  Q  F  C  H  T  K  I  L  L  Q  L  T  L  P  A  A  F  S  I  :  I  T  T  S  E  V  T  K  S  L  *  R  W  L  K  S  L  H  Q  S  R  L  R  H  L  V  L   : A  V  A  V  A  E  V  M  V  V  V  V  A  G  A  G  I  T  T  E  T  V  E  V  P  A  Q  I  D  S  F  M  V  E  I  V  H  V  L  I  E  F  Q  S  S  I  L  C  T  K  I  C  G  G  R  V  F  *  L  V  P  F  Q  D  I  L  S  V  T  *  K  R  *  A  V  N  S  L  P  F  E  Q  Y  P  P  S  L  L  S  F  C  Y  L  G  L  R  K  G  W  G  F  L  V  Q  N  L  F  *  Y  V  E  C  F  D  R  G  D  W  I  F  C  K  L  L  L  R  *  V  K  Y  S  G  E  C  Y  Y  C  G  K  P  I  T  L  V  I  *  A  E  *  C  L  V  S  L  S  D  F  A  C  I  L  E  M  L  A  S  L  H  *  T  P  C  I  M  N  L  F  P  I  *  C  C  C  *  L  L  V  L  F  S  F  I  V  Y  L  L  V  Q  F  L  F  H  G  R  I  W  R  T  S  L  L  Y  *  T  H  F  S  A  *  M  A  E  Y  N  G  E  V  L  G  N  L  I  V  G  I </second_frame>
            <third_frame>   E  Y  R  R  W  L  W  *  F  S  S  *  G  S  G  K  G  Q  A  M  R  *  E  L  W  R  S  L  *  Q  R  K  N  I  Y  L  K  F  A  S  *  C  D  R  R  R  T  *  R  T  F  W  E  H  W  T   : S  C  K  N  Q  A  K  T  R  L  Q  R  P  V  A  L  E  H  K  A  I  H  R  R  S  R  K  *  Q  R  R  C  S  S  V  I  R  R  S  F  C  S  S  L  C  R  R  L  F  Q  * :   S  R  L  Q  R  L  Q  N  H  C  S  D  G  *  K  V  C  T  K  A  A  S  G  I  W  F  W  :  P  W  R  S  R  R  L  W  W  W  W  W  R  A  Q  G  *  L  Q  R  R  W  R  F  R  P  R  *  T  V  S  W  W  K  S  F  T  S  L  L  S  S  S  R  A  F  Y  V  L  K  F  V  V  G  G  F  F  S  *  F  H  F  K  I  Y  S  L  *  L  K  R  G  R  L  L  T  H  F  H  L  S  N  I  H  L  L  F  F  L  S  A  T  W  G  C  V  R  G  G  V  F  *  F  R  T  F  F  D  M  L  N  V  L  I  E  A  I  G  Y  S  A  N  C  C  *  G  R  *  N  I  Q  V  S  V  T  T  V  E  N  R  L  L  W  *  F  K  L  N  D  V  W  S  L  *  V  I  L  L  A  F  W  K  C  *  H  L  C  T  R  P  L  V  *  *  I  C  F  L  Y  D  V  A  V  N  Y  L  Y  C  F  L  L  L  C  I  C  *  F  S  F  S  S  M  E  E  Y  G  G  Q  V  S  C  T  K  H  I  F  Q  H  E  W  R  S  T  M  V  K  Y  L  V  I  *  L  *  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15360" stop="15530"/>
                    <exon start="15804" stop="15954"/>
                    <exon start="16038" stop="16119"/>
                    <exon start="17224" stop="17344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTGGGYGSSPAEAPVKVKQCDENCGDLCDNARIYISNLPPDVTVEELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDDQGNNKGDAVLSYEDPSAAHSAGGFFNNHDFRGYKITVAMAEKSAPKPPPAFGSGRGGRGGYGGGGGGRRDNYRDGGGSGPDRQFHGGNRSRPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17690" stop="17899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLHFGNASISALDPLYNEFVSYMMLLLITCTVFFYCVSASSVSLPWKNMEDKSLVLNTFFSMNGGVQW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14503" e_stop="14708"/>
            <exon e_start="14780" e_stop="15011"/>
            <exon e_start="15804" e_stop="15954"/>
            <exon e_start="16038" e_stop="16119"/>
            <exon e_start="17224" e_stop="17927"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.840"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.949"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.840">
            <gDNA_exon_boundary e_start="14503" e_stop="14708" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14709" i_stop="14779" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="14780" e_stop="15011" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15012" i_stop="15803" i_length="792"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15804" e_stop="15954" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16038" e_stop="16119" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17224" e_stop="17927" e_length="704"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14503" stop="14708"/>
              <exon start="14780" stop="15011"/>
              <exon start="15804" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14879" stop="15011"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15900" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15911" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713621" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17927"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17405" stop="17893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E594295" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGTACGTACGGTTACGAAAGCGGCGGATCTGCTCCGCCACCAAGTGGCGGAGGAGGCGGTGGGTATGGATCGGGTGGCGGAGGATATGGTGGTTCAGGTGGTGGTTACGGAGGCAGTGGCGGATCATACGGTGGCGGCGGTAGAGGTGGCGGAGGTCGAGGAGGTGGAGGTGGAGGCTATGGTGGTAGCTCCCATAATCGAG : GAGGTGGAGGTGGATACCATGGAGGAGATCGTGGAGGTAGCGGTGGATACCAAGGAGGAGATCGTGGAGGTGGCGGTGGATACCAAGGAGGAGATCGTGGCGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTAGTGGTGGATACCAAGGAGGAGATCGCGGAGGTCGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA : ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG : CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGATGTTGCTGTTAATTACTTGTACTGTTTTCTTTTATTGTGTATCTGCTAGTTCAGTTTCTCTTCCATGGAAGAATATGGAGGACAAGTCTCTTGTACTAAACACATTTTTCAGCATGAATGGCGGAGTACAATGGTGAAGTACTTGGTAATTTAATTGTAGGGATT</gDNA_template>
            <first_frame> G  R  Y  V  R  L  R  K  R  R  I  C  S  A  T  K  W  R  R  R  R  W  V  W  I  G  W  R  R  I  W  W  F  R  W  W  L  R  R  Q  W  R  I  I  R  W  R  R  *  R  W  R  R  S  R  R  W  R  W  R  L  W  W  *  L  P  *  S  R :   R  W  R  W  I  P  W  R  R  S  W  R  *  R  W  I  P  R  R  R  S  W  R  W  R  W  I  P  R  R  R  S  W  R  W  R  W  I  P  R  R  R  S  W  R  *  W  W  I  P  R  R  R  S  R  R  S  R  R  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  V  A  R  I  K  Q  K  R  G  Y  K  D  Q  W  P  W  S  I  K  L  Y  T  D  D  Q  G  N  N  K  G  D  A  V  L  S  Y  E  D  P  S  A  A  H  S  A  G  G  F  F  N   : N  H  D  F  R  G  Y  K  I  T  V  A  M  A  E  K  S  A  P  K  P  P  P  A  F  G  S  G :   R  G  G  R  G  G  Y  G  G  G  G  G  G  R  R  D  N  Y  R  D  G  G  G  S  G  P  D  R  Q  F  H  G  G  N  R  S  R  P  Y  *  V  P  V  E  H  F  M  Y  *  N  L  W  W  E  G  F  L  V  S  S  I  S  R  Y  T  L  C  D  L  K  E  V  G  C  *  L  T  S  I  *  A  I  S  T  F  S  S  F  F  L  L  L  G  V  A  *  G  V  G  F  S  S  S  E  P  F  L  I  C  *  M  F  *  *  R  R  L  D  I  L  Q  I  A  A  K  V  G  E  I  F  R  *  V  L  L  L  W  K  T  D  Y  S  G  N  L  S  *  M  M  F  G  L  F  K  *  F  C  L  H  F  G  N  A  S  I  S  A  L  D  P  L  Y  N  E  F  V  S  Y  M  M  L  L  L  I  T  C  T  V  F  F  Y  C  V  S  A  S  S  V  S  L  P  W  K  N  M  E  D  K  S  L  V  L  N  T  F  F  S  M  N  G  G  V  Q  W  *  S  T  W  *  F  N  C  R  D  </first_frame>
            <second_frame>  A  G  T  Y  G  Y  E  S  G  G  S  A  P  P  P  S  G  G  G  G  G  G  Y  G  S  G  G  G  G  Y  G  G  S  G  G  G  Y  G  G  S  G  G  S  Y  G  G  G  G  R  G  G  G  G  R  G  G  G  G  G  G  Y  G  G  S  S  H  N  R   : G  G  G  G  G  Y  H  G  G  D  R  G  G  S  G  G  Y  Q  G  G  D  R  G  G  G  G  G  Y  Q  G  G  D  R  G  G  G  G  G  Y  Q  G  G  D  R  G  G  S  G  G  Y  Q  G  G  D  R  G  G  R  G  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   L  Q  E  S  S  K  N  E  V  T  K  T  S  G  L  G  A  *  S  Y  T  Q  T  I  K  E  I  T  K  E  M  Q  F  C  H  T  K  I  L  L  Q  L  T  L  P  A  A  F  S  I  :  I  T  T  S  E  V  T  K  S  L  *  R  W  L  K  S  L  H  Q  S  R  L  R  H  L  V  L   : A  V  A  V  A  E  V  M  V  V  V  V  A  G  A  G  I  T  T  E  T  V  E  V  P  A  Q  I  D  S  F  M  V  E  I  V  H  V  L  I  E  F  Q  S  S  I  L  C  T  K  I  C  G  G  R  V  F  *  L  V  P  F  Q  D  I  L  S  V  T  *  K  R  *  A  V  N  S  L  P  F  E  Q  Y  P  P  S  L  L  S  F  C  Y  L  G  L  R  K  G  W  G  F  L  V  Q  N  L  F  *  Y  V  E  C  F  D  R  G  D  W  I  F  C  K  L  L  L  R  *  V  K  Y  S  G  E  C  Y  Y  C  G  K  P  I  T  L  V  I  *  A  E  *  C  L  V  S  L  S  D  F  A  C  I  L  E  M  L  A  S  L  H  *  T  P  C  I  M  N  L  F  P  I  *  C  C  C  *  L  L  V  L  F  S  F  I  V  Y  L  L  V  Q  F  L  F  H  G  R  I  W  R  T  S  L  L  Y  *  T  H  F  S  A  *  M  A  E  Y  N  G  E  V  L  G  N  L  I  V  G  I </second_frame>
            <third_frame>   P  V  R  T  V  T  K  A  A  D  L  L  R  H  Q  V  A  E  E  A  V  G  M  D  R  V  A  E  D  M  V  V  Q  V  V  V  T  E  A  V  A  D  H  T  V  A  A  V  E  V  A  E  V  E  E  V  E  V  E  A  M  V  V  A  P  I  I  E  :  E  V  E  V  D  T  M  E  E  I  V  E  V  A  V  D  T  K  E  E  I  V  E  V  A  V  D  T  K  E  E  I  V  A  V  A  V  D  T  K  E  E  I  V  E  V  V  V  D  T  K  E  E  I  A  E  V  A  A  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : C  C  K  N  Q  A  K  T  R  L  Q  R  P  V  A  L  E  H  K  A  I  H  R  R  S  R  K  *  Q  R  R  C  S  S  V  I  R  R  S  F  C  S  S  L  C  R  R  L  F  Q  * :   S  R  L  Q  R  L  Q  N  H  C  S  D  G  *  K  V  C  T  K  A  A  S  G  I  W  F  W  :  P  W  R  S  R  R  L  W  W  W  W  W  R  A  Q  G  *  L  Q  R  R  W  R  F  R  P  R  *  T  V  S  W  W  K  S  F  T  S  L  L  S  S  S  R  A  F  Y  V  L  K  F  V  V  G  G  F  F  S  *  F  H  F  K  I  Y  S  L  *  L  K  R  G  R  L  L  T  H  F  H  L  S  N  I  H  L  L  F  F  L  S  A  T  W  G  C  V  R  G  G  V  F  *  F  R  T  F  F  D  M  L  N  V  L  I  E  A  I  G  Y  S  A  N  C  C  *  G  R  *  N  I  Q  V  S  V  T  T  V  E  N  R  L  L  W  *  F  K  L  N  D  V  W  S  L  *  V  I  L  L  A  F  W  K  C  *  H  L  C  T  R  P  L  V  *  *  I  C  F  L  Y  D  V  A  V  N  Y  L  Y  C  F  L  L  L  C  I  C  *  F  S  F  S  S  M  E  E  Y  G  G  Q  V  S  C  T  K  H  I  F  Q  H  E  W  R  S  T  M  V  K  Y  L  V  I  *  L  *  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14505" stop="14708"/>
                    <exon start="14780" stop="15011"/>
                    <exon start="15804" stop="15886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVRTVTKAADLLRHQVAEEAVGMDRVAEDMVVQVVVTEAVADHTVAAVEVAEVEEVEVEAMVVAPIIEEVEVDTMEEIVEVAVDTKEEIVEVAVDTKEEIVAVAVDTKEEIVEVVVDTKEEIAEVAAVFFFFFFFFFFFFFFFFFCCKNQAKTRLQRPVALEHKAIHRRSRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14504" stop="14708"/>
                    <exon start="14780" stop="15011"/>
                    <exon start="15804" stop="15858"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGTYGYESGGSAPPPSGGGGGGYGSGGGGYGGSGGGYGGSGGSYGGGGRGGGGRGGGGGGYGGSSHNRGGGGGYHGGDRGGSGGYQGGDRGGGGGYQGGDRGGGGGYQGGDRGGSGGYQGGDRGGRGGFFFFFFFFFFFFFFFFFLLQESSKNEVTKTSGLGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14919" stop="15011"/>
                    <exon start="15804" stop="15954"/>
                    <exon start="16038" stop="16119"/>
                    <exon start="17224" stop="17344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WWIPRRRSRRSRRFFFFFFFFFFFFFFFFFFVARIKQKRGYKDQWPWSIKLYTDDQGNNKGDAVLSYEDPSAAHSAGGFFNNHDFRGYKITVAMAEKSAPKPPPAFGSGRGGRGGYGGGGGGRRDNYRDGGGSGPDRQFHGGNRSRPY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17690" stop="17899"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCLHFGNASISALDPLYNEFVSYMMLLLITCTVFFYCVSASSVSLPWKNMEDKSLVLNTFFSMNGGVQW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="15360" e_stop="15530"/>
            <exon e_start="15804" e_stop="15954"/>
            <exon e_start="16038" e_stop="16119"/>
            <exon e_start="17224" e_stop="17763"/>
            <exon e_start="17942" e_stop="17960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="1.000"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15360" e_stop="15530" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15531" i_stop="15803" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15804" e_stop="15954" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16038" e_stop="16119" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17224" e_stop="17763" e_length="540"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="17764" i_stop="17941" i_length="178"/>
          </intron>
          <exon e_serial="5" e_score="0.875">
            <gDNA_exon_boundary e_start="17942" e_stop="17960" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15360" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15435" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15900" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17763"/>
              <exon start="17942" stop="17949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421036" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15909" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17763"/>
              <exon start="17942" stop="17960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15911" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713621" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAA : GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA : ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG : CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTGGTAATTTAAGCTGAATGATGTTTGGTCTCTTTAAGTGATTTTGCTTGCATTTTGGAAATGCTAGCATCTCTGCACTAGACCCCTTGTATAATGAATTTGTTTCCTATATGAT : AAAAAAGACATCCGACCAC</gDNA_template>
            <first_frame> R  N  T  G  G  G  Y  G  S  S  P  A  E  A  P  V  K  V  K  Q  C  D  E  N  C  G  D  L  C  D  N  A  R  I  Y  I  S  N  L  P  P  D  V  T  V  E  E  L  R  E  L  F  G  S  I  G  Q  :  V  A  R  I  K  Q  K  R  G  Y  K  D  Q  W  P  W  S  I  K  L  Y  T  D  D  Q  G  N  N  K  G  D  A  V  L  S  Y  E  D  P  S  A  A  H  S  A  G  G  F  F  N   : N  H  D  F  R  G  Y  K  I  T  V  A  M  A  E  K  S  A  P  K  P  P  P  A  F  G  S  G :   R  G  G  R  G  G  Y  G  G  G  G  G  G  R  R  D  N  Y  R  D  G  G  G  S  G  P  D  R  Q  F  H  G  G  N  R  S  R  P  Y  *  V  P  V  E  H  F  M  Y  *  N  L  W  W  E  G  F  L  V  S  S  I  S  R  Y  T  L  C  D  L  K  E  V  G  C  *  L  T  S  I  *  A  I  S  T  F  S  S  F  F  L  L  L  G  V  A  *  G  V  G  F  S  S  S  E  P  F  L  I  C  *  M  F  *  *  R  R  L  D  I  L  Q  I  A  A  K  V  G  E  I  F  R  *  V  L  L  L  W  K  T  D  Y  S  G  N  L  S  *  M  M  F  G  L  F  K  *  F  C  L  H  F  G  N  A  S  I  S  A  L  D  P  L  Y  N  E  F  V  S  Y  M  I :   K  K  T  S  D  H </first_frame>
            <second_frame>  G  I  Q  E  V  V  M  V  V  L  Q  L  R  L  R  *  R  S  S  N  A  M  R  I  V  E  I  S  V  T  T  Q  E  Y  I  S  Q  I  C  L  L  M  *  P  S  K  N  L  E  N  F  L  G  A  L  D  K :   L  Q  E  S  S  K  N  E  V  T  K  T  S  G  L  G  A  *  S  Y  T  Q  T  I  K  E  I  T  K  E  M  Q  F  C  H  T  K  I  L  L  Q  L  T  L  P  A  A  F  S  I  :  I  T  T  S  E  V  T  K  S  L  *  R  W  L  K  S  L  H  Q  S  R  L  R  H  L  V  L   : A  V  A  V  A  E  V  M  V  V  V  V  A  G  A  G  I  T  T  E  T  V  E  V  P  A  Q  I  D  S  F  M  V  E  I  V  H  V  L  I  E  F  Q  S  S  I  L  C  T  K  I  C  G  G  R  V  F  *  L  V  P  F  Q  D  I  L  S  V  T  *  K  R  *  A  V  N  S  L  P  F  E  Q  Y  P  P  S  L  L  S  F  C  Y  L  G  L  R  K  G  W  G  F  L  V  Q  N  L  F  *  Y  V  E  C  F  D  R  G  D  W  I  F  C  K  L  L  L  R  *  V  K  Y  S  G  E  C  Y  Y  C  G  K  P  I  T  L  V  I  *  A  E  *  C  L  V  S  L  S  D  F  A  C  I  L  E  M  L  A  S  L  H  *  T  P  C  I  M  N  L  F  P  I  *   : *  K  R  H  P  T   </second_frame>
            <third_frame>   E  Y  R  R  W  L  W  *  F  S  S  *  G  S  G  K  G  Q  A  M  R  *  E  L  W  R  S  L  *  Q  R  K  N  I  Y  L  K  F  A  S  *  C  D  R  R  R  T  *  R  T  F  W  E  H  W  T   : S  C  K  N  Q  A  K  T  R  L  Q  R  P  V  A  L  E  H  K  A  I  H  R  R  S  R  K  *  Q  R  R  C  S  S  V  I  R  R  S  F  C  S  S  L  C  R  R  L  F  Q  * :   S  R  L  Q  R  L  Q  N  H  C  S  D  G  *  K  V  C  T  K  A  A  S  G  I  W  F  W  :  P  W  R  S  R  R  L  W  W  W  W  W  R  A  Q  G  *  L  Q  R  R  W  R  F  R  P  R  *  T  V  S  W  W  K  S  F  T  S  L  L  S  S  S  R  A  F  Y  V  L  K  F  V  V  G  G  F  F  S  *  F  H  F  K  I  Y  S  L  *  L  K  R  G  R  L  L  T  H  F  H  L  S  N  I  H  L  L  F  F  L  S  A  T  W  G  C  V  R  G  G  V  F  *  F  R  T  F  F  D  M  L  N  V  L  I  E  A  I  G  Y  S  A  N  C  C  *  G  R  *  N  I  Q  V  S  V  T  T  V  E  N  R  L  L  W  *  F  K  L  N  D  V  W  S  L  *  V  I  L  L  A  F  W  K  C  *  H  L  C  T  R  P  L  V  *  *  I  C  F  L  Y  D  :  K  K  D  I  R  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15360" stop="15530"/>
                    <exon start="15804" stop="15954"/>
                    <exon start="16038" stop="16119"/>
                    <exon start="17224" stop="17344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTGGGYGSSPAEAPVKVKQCDENCGDLCDNARIYISNLPPDVTVEELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDDQGNNKGDAVLSYEDPSAAHSAGGFFNNHDFRGYKITVAMAEKSAPKPPPAFGSGRGGRGGYGGGGGGRRDNYRDGGGSGPDRQFHGGNRSRPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15360" e_stop="15530"/>
            <exon e_start="15804" e_stop="15954"/>
            <exon e_start="16038" e_stop="16119"/>
            <exon e_start="17224" e_stop="17651"/>
            <exon e_start="17923" e_stop="17935"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.188" acc_prob="0.891" e_score="0.935"/>
          <exon-only e_score="0.846"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15360" e_stop="15530" e_length="171"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15531" i_stop="15803" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15804" e_stop="15954" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="16038" e_stop="16119" e_length="82"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104"/>
          </intron>
          <exon e_serial="4" e_score="0.935">
            <gDNA_exon_boundary e_start="17224" e_stop="17651" e_length="428"/>
          </exon>
          <intron i_serial="4" don_prob="0.188" acc_prob="0.891">
            <gDNA_intron_boundary i_start="17652" i_stop="17922" i_length="271"/>
          </intron>
          <exon e_serial="5" e_score="0.846">
            <gDNA_exon_boundary e_start="17923" e_stop="17935" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15360" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15435" stop="15530"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15900" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17651"/>
              <exon start="17923" stop="17935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E421035" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGGAATACAGGAGGTGGTTATGGTAGTTCTCCAGCTGAGGCTCCGGTAAAGGTCAAGCAATGCGATGAGAATTGTGGAGATCTCTGTGACAACGCAAGAATATATATCTCAAATTTGCCTCCTGATGTGACCGTCGAAGAACTTAGAGAACTTTTTGGGAGCATTGGACAA : GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA : ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG : CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAATATCCACCTTCTCTTCTTTCTTTCTGCTACTTGGGGTTGCGTAAGGGGTGGGGTTTTCTAGTTCAGAACCTTTTTTGATATGTTGAATGTTTTGATAGAGGCGATTGGATATTCTGCAAATTGCTGCTAAGGTAGGTGAAATATTCAGGTGAGTGTTACTACTGTGGAAAACCGATTACTCTG : GGATTAATGTTTG</gDNA_template>
            <first_frame> R  N  T  G  G  G  Y  G  S  S  P  A  E  A  P  V  K  V  K  Q  C  D  E  N  C  G  D  L  C  D  N  A  R  I  Y  I  S  N  L  P  P  D  V  T  V  E  E  L  R  E  L  F  G  S  I  G  Q  :  V  A  R  I  K  Q  K  R  G  Y  K  D  Q  W  P  W  S  I  K  L  Y  T  D  D  Q  G  N  N  K  G  D  A  V  L  S  Y  E  D  P  S  A  A  H  S  A  G  G  F  F  N   : N  H  D  F  R  G  Y  K  I  T  V  A  M  A  E  K  S  A  P  K  P  P  P  A  F  G  S  G :   R  G  G  R  G  G  Y  G  G  G  G  G  G  R  R  D  N  Y  R  D  G  G  G  S  G  P  D  R  Q  F  H  G  G  N  R  S  R  P  Y  *  V  P  V  E  H  F  M  Y  *  N  L  W  W  E  G  F  L  V  S  S  I  S  R  Y  T  L  C  D  L  K  E  V  G  C  *  L  T  S  I  *  A  I  S  T  F  S  S  F  F  L  L  L  G  V  A  *  G  V  G  F  S  S  S  E  P  F  L  I  C  *  M  F  *  *  R  R  L  D  I  L  Q  I  A  A  K  V  G  E  I  F  R  *  V  L  L  L  W  K  T  D  Y  S   : G  I  N  V   </first_frame>
            <second_frame>  G  I  Q  E  V  V  M  V  V  L  Q  L  R  L  R  *  R  S  S  N  A  M  R  I  V  E  I  S  V  T  T  Q  E  Y  I  S  Q  I  C  L  L  M  *  P  S  K  N  L  E  N  F  L  G  A  L  D  K :   L  Q  E  S  S  K  N  E  V  T  K  T  S  G  L  G  A  *  S  Y  T  Q  T  I  K  E  I  T  K  E  M  Q  F  C  H  T  K  I  L  L  Q  L  T  L  P  A  A  F  S  I  :  I  T  T  S  E  V  T  K  S  L  *  R  W  L  K  S  L  H  Q  S  R  L  R  H  L  V  L   : A  V  A  V  A  E  V  M  V  V  V  V  A  G  A  G  I  T  T  E  T  V  E  V  P  A  Q  I  D  S  F  M  V  E  I  V  H  V  L  I  E  F  Q  S  S  I  L  C  T  K  I  C  G  G  R  V  F  *  L  V  P  F  Q  D  I  L  S  V  T  *  K  R  *  A  V  N  S  L  P  F  E  Q  Y  P  P  S  L  L  S  F  C  Y  L  G  L  R  K  G  W  G  F  L  V  Q  N  L  F  *  Y  V  E  C  F  D  R  G  D  W  I  F  C  K  L  L  L  R  *  V  K  Y  S  G  E  C  Y  Y  C  G  K  P  I  T  L  :  G  L  M  F  </second_frame>
            <third_frame>   E  Y  R  R  W  L  W  *  F  S  S  *  G  S  G  K  G  Q  A  M  R  *  E  L  W  R  S  L  *  Q  R  K  N  I  Y  L  K  F  A  S  *  C  D  R  R  R  T  *  R  T  F  W  E  H  W  T   : S  C  K  N  Q  A  K  T  R  L  Q  R  P  V  A  L  E  H  K  A  I  H  R  R  S  R  K  *  Q  R  R  C  S  S  V  I  R  R  S  F  C  S  S  L  C  R  R  L  F  Q  * :   S  R  L  Q  R  L  Q  N  H  C  S  D  G  *  K  V  C  T  K  A  A  S  G  I  W  F  W  :  P  W  R  S  R  R  L  W  W  W  W  W  R  A  Q  G  *  L  Q  R  R  W  R  F  R  P  R  *  T  V  S  W  W  K  S  F  T  S  L  L  S  S  S  R  A  F  Y  V  L  K  F  V  V  G  G  F  F  S  *  F  H  F  K  I  Y  S  L  *  L  K  R  G  R  L  L  T  H  F  H  L  S  N  I  H  L  L  F  F  L  S  A  T  W  G  C  V  R  G  G  V  F  *  F  R  T  F  F  D  M  L  N  V  L  I  E  A  I  G  Y  S  A  N  C  C  *  G  R  *  N  I  Q  V  S  V  T  T  V  E  N  R  L  L  W :   D  *  C  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15360" stop="15530"/>
                    <exon start="15804" stop="15954"/>
                    <exon start="16038" stop="16119"/>
                    <exon start="17224" stop="17344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNTGGGYGSSPAEAPVKVKQCDENCGDLCDNARIYISNLPPDVTVEELRELFGSIGQVARIKQKRGYKDQWPWSIKLYTDDQGNNKGDAVLSYEDPSAAHSAGGFFNNHDFRGYKITVAMAEKSAPKPPPAFGSGRGGRGGYGGGGGGRRDNYRDGGGSGPDRQFHGGNRSRPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="14503" e_stop="14708"/>
            <exon e_start="14780" e_stop="15011"/>
            <exon e_start="15804" e_stop="15954"/>
            <exon e_start="16038" e_stop="16119"/>
            <exon e_start="17224" e_stop="17468"/>
            <exon e_start="17942" e_stop="17969"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.840"/>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.949"/>
          <exon-intron don_prob="0.993" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.817" e_score="0.996"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.840">
            <gDNA_exon_boundary e_start="14503" e_stop="14708" e_length="206"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14709" i_stop="14779" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="14780" e_stop="15011" e_length="232"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15012" i_stop="15803" i_length="792"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15804" e_stop="15954" e_length="151"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.877">
            <gDNA_intron_boundary i_start="15955" i_stop="16037" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="16038" e_stop="16119" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="16120" i_stop="17223" i_length="1104"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="17224" e_stop="17468" e_length="245"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.817">
            <gDNA_intron_boundary i_start="17469" i_stop="17941" i_length="473"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="17942" e_stop="17969" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14503" stop="14708"/>
              <exon start="14780" stop="15011"/>
              <exon start="15804" stop="15948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14879" stop="15011"/>
              <exon start="15804" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305767" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15840" stop="15954"/>
              <exon start="16038" stop="16119"/>
              <exon start="17224" stop="17468"/>
              <exon start="17942" stop="17969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374285" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCGGTACGTACGGTTACGAAAGCGGCGGATCTGCTCCGCCACCAAGTGGCGGAGGAGGCGGTGGGTATGGATCGGGTGGCGGAGGATATGGTGGTTCAGGTGGTGGTTACGGAGGCAGTGGCGGATCATACGGTGGCGGCGGTAGAGGTGGCGGAGGTCGAGGAGGTGGAGGTGGAGGCTATGGTGGTAGCTCCCATAATCGAG : GAGGTGGAGGTGGATACCATGGAGGAGATCGTGGAGGTAGCGGTGGATACCAAGGAGGAGATCGTGGAGGTGGCGGTGGATACCAAGGAGGAGATCGTGGCGGTGGCGGTGGATACCAAGGAGGAGATCGTGGAGGTAGTGGTGGATACCAAGGAGGAGATCGCGGAGGTCGCGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN : GTTGCAAGAATCAAGCAAAAACGAGGTTACAAAGACCAGTGGCCTTGGAGCATAAAGCTATACACAGACGATCAAGGAAATAACAAAGGAGATGCAGTTCTGTCATACGAAGATCCTTCTGCAGCTCACTCTGCCGGCGGCTTTTTCAATA : ATCACGACTTCAGAGGTTACAAAATCACTGTAGCGATGGCTGAAAAGTCTGCACCAAAGCCGCCTCCGGCATTTGGTTCTGG : CCGTGGCGGTCGCGGAGGTTATGGTGGTGGTGGTGGCGGGCGCAGGGATAACTACAGAGACGGTGGAGGTTCCGGCCCAGATAGACAGTTTCATGGTGGAAATCGTTCACGTCCTTATTGAGTTCCAGTCGAGCATTTTATGTACTAAAATTTGTGGTGGGAGGGTTTTTTAGTTAGTTCCATTTCAAGATATACTCTCTGTGACTTAAAAGAGGTAGGCTGTTAACTCACTTCCATTTGAGCAA : AAAAAAGACATCCGACCACACAGCTATA</gDNA_template>
            <first_frame> G  R  Y  V  R  L  R  K  R  R  I  C  S  A  T  K  W  R  R  R  R  W  V  W  I  G  W  R  R  I  W  W  F  R  W  W  L  R  R  Q  W  R  I  I  R  W  R  R  *  R  W  R  R  S  R  R  W  R  W  R  L  W  W  *  L  P  *  S  R :   R  W  R  W  I  P  W  R  R  S  W  R  *  R  W  I  P  R  R  R  S  W  R  W  R  W  I  P  R  R  R  S  W  R  W  R  W  I  P  R  R  R  S  W  R  *  W  W  I  P  R  R  R  S  R  R  S  R  R  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  :  V  A  R  I  K  Q  K  R  G  Y  K  D  Q  W  P  W  S  I  K  L  Y  T  D  D  Q  G  N  N  K  G  D  A  V  L  S  Y  E  D  P  S  A  A  H  S  A  G  G  F  F  N   : N  H  D  F  R  G  Y  K  I  T  V  A  M  A  E  K  S  A  P  K  P  P  P  A  F  G  S  G :   R  G  G  R  G  G  Y  G  G  G  G  G  G  R  R  D  N  Y  R  D  G  G  G  S  G  P  D  R  Q  F  H  G  G  N  R  S  R  P  Y  *  V  P  V  E  H  F  M  Y  *  N  L  W  W  E  G  F  L  V  S  S  I  S  R  Y  T  L  C  D  L  K  E  V  G  C  *  L  T  S  I  *  A   : K  K  R  H  P  T  T  Q  L   </first_frame>
            <second_frame>  A  G  T  Y  G  Y  E  S  G  G  S  A  P  P  P  S  G  G  G  G  G  G  Y  G  S  G  G  G  G  Y  G  G  S  G  G  G  Y  G  G  S  G  G  S  Y  G  G  G  G  R  G  G  G  G  R  G  G  G  G  G  G  Y  G  G  S  S  H  N  R   : G  G  G  G  G  Y  H  G  G  D  R  G  G  S  G  G  Y  Q  G  G  D  R  G  G  G  G  G  Y  Q  G  G  D  R  G  G  G  G  G  Y  Q  G  G  D  R  G  G  S  G  G  Y  Q  G  G  D  R  G  G  R  G  G  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  L :   L  Q  E  S  S  K  N  E  V  T  K  T  S  G  L  G  A  *  S  Y  T  Q  T  I  K  E  I  T  K  E  M  Q  F  C  H  T  K  I  L  L  Q  L  T  L  P  A  A  F  S  I  :  I  T  T  S  E  V  T  K  S  L  *  R  W  L  K  S  L  H  Q  S  R  L  R  H  L  V  L   : A  V  A  V  A  E  V  M  V  V  V  V  A  G  A  G  I  T  T  E  T  V  E  V  P  A  Q  I  D  S  F  M  V  E  I  V  H  V  L  I  E  F  Q  S  S  I  L  C  T  K  I  C  G  G  R  V  F  *  L  V  P  F  Q  D  I  L  S  V  T  *  K  R  *  A  V  N  S  L  P  F  E  Q  :  K  K  D  I  R  P  H  S  Y  </second_frame>
            <third_frame>   P  V  R  T  V  T  K  A  A  D  L  L  R  H  Q  V  A  E  E  A  V  G  M  D  R  V  A  E  D  M  V  V  Q  V  V  V  T  E  A  V  A  D  H  T  V  A  A  V  E  V  A  E  V  E  E  V  E  V  E  A  M  V  V  A  P  I  I  E  :  E  V  E  V  D  T  M  E  E  I  V  E  V  A  V  D  T  K  E  E  I  V  E  V  A  V  D  T  K  E  E  I  V  A  V  A  V  D  T  K  E  E  I  V  E  V  V  V  D  T  K  E  E  I  A  E  V  A  A  V  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F  F   : C  C  K  N  Q  A  K  T  R  L  Q  R  P  V  A  L  E  H  K  A  I  H  R  R  S  R  K  *  Q  R  R  C  S  S  V  I  R  R  S  F  C  S  S  L  C  R  R  L  F  Q  * :   S  R  L  Q  R  L  Q  N  H  C  S  D  G  *  K  V  C  T  K  A  A  S  G  I  W  F  W  :  P  W  R  S  R  R  L  W  W  W  W  W  R  A  Q  G  *  L  Q  R  R  W  R  F  R  P  R  *  T  V  S  W  W  K  S  F  T  S  L  L  S  S  S  R  A  F  Y  V  L  K  F  V  V  G  G  F  F  S  *  F  H  F  K  I  Y  S  L  *  L  K  R  G  R  L  L  T  H  F  H  L  S  K :   K  K  T  S  D  H  T  A  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14505" stop="14708"/>
                    <exon start="14780" stop="15011"/>
                    <exon start="15804" stop="15886"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVRTVTKAADLLRHQVAEEAVGMDRVAEDMVVQVVVTEAVADHTVAAVEVAEVEEVEVEAMVVAPIIEEVEVDTMEEIVEVAVDTKEEIVEVAVDTKEEIVAVAVDTKEEIVEVVVDTKEEIAEVAAVFFFFFFFFFFFFFFFFFCCKNQAKTRLQRPVALEHKAIHRRSRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14504" stop="14708"/>
                    <exon start="14780" stop="15011"/>
                    <exon start="15804" stop="15858"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGTYGYESGGSAPPPSGGGGGGYGSGGGGYGGSGGGYGGSGGSYGGGGRGGGGRGGGGGGYGGSSHNRGGGGGYHGGDRGGSGGYQGGDRGGGGGYQGGDRGGGGGYQGGDRGGSGGYQGGDRGGRGGFFFFFFFFFFFFFFFFFLLQESSKNEVTKTSGLGA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="5" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14919" stop="15011"/>
                    <exon start="15804" stop="15954"/>
                    <exon start="16038" stop="16119"/>
                    <exon start="17224" stop="17344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WWIPRRRSRRSRRFFFFFFFFFFFFFFFFFFVARIKQKRGYKDQWPWSIKLYTDDQGNNKGDAVLSYEDPSAAHSAGGFFNNHDFRGYKITVAMAEKSAPKPPPAFGSGRGGRGGYGGGGGGRRDNYRDGGGSGPDRQFHGGNRSRPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="20064" PGL_stop="20833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20064" e_stop="20833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="20064" e_stop="20833" e_length="770"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20064" stop="20833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546820" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20072" stop="20643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362754" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGGCCTTAATATTTCCACCAGAAGGCAGAATGGTGCTACAGACAATTTCAGATGTTGGTTTCATGTTTCATGTGTTTGTTCTTGGAGTTCAAGTAGATCCAACAATGCTGAGAAGAGCAGGGCGAAACGCGGTTCTAATAGGTGTTTCCTCTTTTTTTATGCCTTTTGCACTTGGAGGATTAGCCTGTTATGTATTACCTTATTTGACTGTCATAGATGACGCGACAGCGCATTTCTTGCCTTTGTTATCTATAATTAACTCTGCTTCATTCTTTCCTGTGATCACTAGCCTTCTTAGCGACCTTAAGATTCTAAATTCAGAAATTGGTCGAATAGCTACATTAGCCTCCTTGGTTAATGACGGTTGTATATATGCTTCTTCCATACTTTTAACAACAATAGATGCATCATCAAATTATTCCAAGTGGAATGGAGTATTGGCCATTGCATGGATAGGCACATTCCTGATAGTAATCGTGTTTGCTGTAAGGCCATTAGTGAAACATATCGCTAGGACTATACCGGAAAGAGGGGCTATGAAGGAAAGCCATTTTCTAATGATAGCTGTCTTAGCTCTCCTCTGTGGATTTGTGGCCCAGTCTCTTGGACAGCCTCCTGCTGTTGGTACTTTTATTTTGGGAGTAGTGGTGCCAGAGGGACCGCCTTTGGGCTCATCGATGGTCTACAAGATTGATTCTTTTTGTACTGGATTGCTGCTTCCTGCTAAGTTTGCTATCAGTGGGTTGACATTGGACATATTCTCCCTA</gDNA_template>
            <first_frame> I  R  P  *  Y  F  H  Q  K  A  E  W  C  Y  R  Q  F  Q  M  L  V  S  C  F  M  C  L  F  L  E  F  K  *  I  Q  Q  C  *  E  E  Q  G  E  T  R  F  *  *  V  F  P  L  F  L  C  L  L  H  L  E  D  *  P  V  M  Y  Y  L  I  *  L  S  *  M  T  R  Q  R  I  S  C  L  C  Y  L  *  L  T  L  L  H  S  F  L  *  S  L  A  F  L  A  T  L  R  F  *  I  Q  K  L  V  E  *  L  H  *  P  P  W  L  M  T  V  V  Y  M  L  L  P  Y  F  *  Q  Q  *  M  H  H  Q  I  I  P  S  G  M  E  Y  W  P  L  H  G  *  A  H  S  *  *  *  S  C  L  L  *  G  H  *  *  N  I  S  L  G  L  Y  R  K  E  G  L  *  R  K  A  I  F  *  *  *  L  S  *  L  S  S  V  D  L  W  P  S  L  L  D  S  L  L  L  L  V  L  L  F  W  E  *  W  C  Q  R  D  R  L  W  A  H  R  W  S  T  R  L  I  L  F  V  L  D  C  C  F  L  L  S  L  L  S  V  G  *  H  W  T  Y  S  P   </first_frame>
            <second_frame>  F  G  L  N  I  S  T  R  R  Q  N  G  A  T  D  N  F  R  C  W  F  H  V  S  C  V  C  S  W  S  S  S  R  S  N  N  A  E  K  S  R  A  K  R  G  S  N  R  C  F  L  F  F  Y  A  F  C  T  W  R  I  S  L  L  C  I  T  L  F  D  C  H  R  *  R  D  S  A  F  L  A  F  V  I  Y  N  *  L  C  F  I  L  S  C  D  H  *  P  S  *  R  P  *  D  S  K  F  R  N  W  S  N  S  Y  I  S  L  L  G  *  *  R  L  Y  I  C  F  F  H  T  F  N  N  N  R  C  I  I  K  L  F  Q  V  E  W  S  I  G  H  C  M  D  R  H  I  P  D  S  N  R  V  C  C  K  A  I  S  E  T  Y  R  *  D  Y  T  G  K  R  G  Y  E  G  K  P  F  S  N  D  S  C  L  S  S  P  L  W  I  C  G  P  V  S  W  T  A  S  C  C  W  Y  F  Y  F  G  S  S  G  A  R  G  T  A  F  G  L  I  D  G  L  Q  D  *  F  F  L  Y  W  I  A  A  S  C  *  V  C  Y  Q  W  V  D  I  G  H  I  L  P  </second_frame>
            <third_frame>   S  A  L  I  F  P  P  E  G  R  M  V  L  Q  T  I  S  D  V  G  F  M  F  H  V  F  V  L  G  V  Q  V  D  P  T  M  L  R  R  A  G  R  N  A  V  L  I  G  V  S  S  F  F  M  P  F  A  L  G  G  L  A  C  Y  V  L  P  Y  L  T  V  I  D  D  A  T  A  H  F  L  P  L  L  S  I  I  N  S  A  S  F  F  P  V  I  T  S  L  L  S  D  L  K  I  L  N  S  E  I  G  R  I  A  T  L  A  S  L  V  N  D  G  C  I  Y  A  S  S  I  L  L  T  T  I  D  A  S  S  N  Y  S  K  W  N  G  V  L  A  I  A  W  I  G  T  F  L  I  V  I  V  F  A  V  R  P  L  V  K  H  I  A  R  T  I  P  E  R  G  A  M  K  E  S  H  F  L  M  I  A  V  L  A  L  L  C  G  F  V  A  Q  S  L  G  Q  P  P  A  V  G  T  F  I  L  G  V  V  V  P  E  G  P  P  L  G  S  S  M  V  Y  K  I  D  S  F  C  T  G  L  L  L  P  A  K  F  A  I  S  G  L  T  L  D  I  F  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20066" stop="20833"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SALIFPPEGRMVLQTISDVGFMFHVFVLGVQVDPTMLRRAGRNAVLIGVSSFFMPFALGGLACYVLPYLTVIDDATAHFLPLLSIINSASFFPVITSLLSDLKILNSEIGRIATLASLVNDGCIYASSILLTTIDASSNYSKWNGVLAIAWIGTFLIVIVFAVRPLVKHIARTIPERGAMKESHFLMIAVLALLCGFVAQSLGQPPAVGTFILGVVVPEGPPLGSSMVYKIDSFCTGLLLPAKFAISGLTLDIFSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="21854" PGL_stop="22595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21854" e_stop="22595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="21854" e_stop="22595" e_length="742"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21854" stop="22595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCGCATCACAATGCTTTACCTAGGTGGTCCTGATGATGATGAAGCACTCGCCTATTGCTGCAGGATGCTAGGGCATCCCCACATCAGCATGAGTCTTGTCTGGCTCAAACATTCGAGTGACAATATCGAGAAGTGTATGGAGTCACATATGATACAGTGGTTCAAGGCTAATAATGTGGATGCAGGGAGAGTGAGTTACCAAGAAGAAGTGGTGAATGATGCAGTGGGGACAACTCAGGTTCTTCGTTCACTCGAGGACAGTTGTGATCTTTGTATAGTTGGTAGAGACCACAAACAGTCCGAGTTAACACTAGGGATTAATGAATGGATCGAATGTCCAGAATTAGGATTTATCGGAGACATGTTAGCTACTTCGGATTATAGTTTTTCATTGCTCGTTGTGCAACAAACACCACCAGGGACCGAGTTTATAAACACCCAGCCACTGCAGCCTGTTGCTAGCAGTTTTTATTCTGGTTCAGATAAATATAGTCAACATTCTGCTTCAGGTAAATATAGTCAGCATTCTGCTTCAGGTAAATATAGTCAGCATTCTGGTTATGGCCCTTTTGGGTAGCAACTCAAGTTGTTTTCCTCTTTGATCAATTCCAAGAATGTAGAAAATAGGTTAAAGGTTACTAAATTGTAAATTTTTGTCAAAAATTGTATGTAGAAATTAGCAAGTACAAAGTCCAGTTTTACTTTTTATGTATAATGGAAGTAGTCACTATTCAACTTG</gDNA_template>
            <first_frame> F  P  H  H  N  A  L  P  R  W  S  *  *  *  *  S  T  R  L  L  L  Q  D  A  R  A  S  P  H  Q  H  E  S  C  L  A  Q  T  F  E  *  Q  Y  R  E  V  Y  G  V  T  Y  D  T  V  V  Q  G  *  *  C  G  C  R  E  S  E  L  P  R  R  S  G  E  *  C  S  G  D  N  S  G  S  S  F  T  R  G  Q  L  *  S  L  Y  S  W  *  R  P  Q  T  V  R  V  N  T  R  D  *  *  M  D  R  M  S  R  I  R  I  Y  R  R  H  V  S  Y  F  G  L  *  F  F  I  A  R  C  A  T  N  T  T  R  D  R  V  Y  K  H  P  A  T  A  A  C  C  *  Q  F  L  F  W  F  R  *  I  *  S  T  F  C  F  R  *  I  *  S  A  F  C  F  R  *  I  *  S  A  F  W  L  W  P  F  W  V  A  T  Q  V  V  F  L  F  D  Q  F  Q  E  C  R  K  *  V  K  G  Y  *  I  V  N  F  C  Q  K  L  Y  V  E  I  S  K  Y  K  V  Q  F  Y  F  L  C  I  M  E  V  V  T  I  Q  L  </first_frame>
            <second_frame>  F  R  I  T  M  L  Y  L  G  G  P  D  D  D  E  A  L  A  Y  C  C  R  M  L  G  H  P  H  I  S  M  S  L  V  W  L  K  H  S  S  D  N  I  E  K  C  M  E  S  H  M  I  Q  W  F  K  A  N  N  V  D  A  G  R  V  S  Y  Q  E  E  V  V  N  D  A  V  G  T  T  Q  V  L  R  S  L  E  D  S  C  D  L  C  I  V  G  R  D  H  K  Q  S  E  L  T  L  G  I  N  E  W  I  E  C  P  E  L  G  F  I  G  D  M  L  A  T  S  D  Y  S  F  S  L  L  V  V  Q  Q  T  P  P  G  T  E  F  I  N  T  Q  P  L  Q  P  V  A  S  S  F  Y  S  G  S  D  K  Y  S  Q  H  S  A  S  G  K  Y  S  Q  H  S  A  S  G  K  Y  S  Q  H  S  G  Y  G  P  F  G  *  Q  L  K  L  F  S  S  L  I  N  S  K  N  V  E  N  R  L  K  V  T  K  L  *  I  F  V  K  N  C  M  *  K  L  A  S  T  K  S  S  F  T  F  Y  V  *  W  K  *  S  L  F  N  L </second_frame>
            <third_frame>   S  A  S  Q  C  F  T  *  V  V  L  M  M  M  K  H  S  P  I  A  A  G  C  *  G  I  P  T  S  A  *  V  L  S  G  S  N  I  R  V  T  I  S  R  S  V  W  S  H  I  *  Y  S  G  S  R  L  I  M  W  M  Q  G  E  *  V  T  K  K  K  W  *  M  M  Q  W  G  Q  L  R  F  F  V  H  S  R  T  V  V  I  F  V  *  L  V  E  T  T  N  S  P  S  *  H  *  G  L  M  N  G  S  N  V  Q  N  *  D  L  S  E  T  C  *  L  L  R  I  I  V  F  H  C  S  L  C  N  K  H  H  Q  G  P  S  L  *  T  P  S  H  C  S  L  L  L  A  V  F  I  L  V  Q  I  N  I  V  N  I  L  L  Q  V  N  I  V  S  I  L  L  Q  V  N  I  V  S  I  L  V  M  A  L  L  G  S  N  S  S  C  F  P  L  *  S  I  P  R  M  *  K  I  G  *  R  L  L  N  C  K  F  L  S  K  I  V  C  R  N  *  Q  V  Q  S  P  V  L  L  F  M  Y  N  G  S  S  H  Y  S  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21855" stop="22433"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FRITMLYLGGPDDDEALAYCCRMLGHPHISMSLVWLKHSSDNIEKCMESHMIQWFKANNVDAGRVSYQEEVVNDAVGTTQVLRSLEDSCDLCIVGRDHKQSELTLGINEWIECPELGFIGDMLATSDYSFSLLVVQQTPPGTEFINTQPLQPVASSFYSGSDKYSQHSASGKYSQHSASGKYSQHSGYGPFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="24306" PGL_stop="26718"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24306" e_stop="24415"/>
            <exon e_start="24497" e_stop="24648"/>
            <exon e_start="24727" e_stop="24971"/>
            <exon e_start="25097" e_stop="25225"/>
            <exon e_start="25304" e_stop="26245"/>
            <exon e_start="26330" e_stop="26718"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.996" e_score="0.991"/>
          <exon-intron don_prob="0.877" acc_prob="1.000" e_score="0.954"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="0.914"/>
          <exon-intron don_prob="0.889" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="0.994"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="24306" e_stop="24415" e_length="110"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24416" i_stop="24496" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="24497" e_stop="24648" e_length="152"/>
          </exon>
          <intron i_serial="2" don_prob="0.877" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24649" i_stop="24726" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.914">
            <gDNA_exon_boundary e_start="24727" e_stop="24971" e_length="245"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24972" i_stop="25096" i_length="125"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25097" e_stop="25225" e_length="129"/>
          </exon>
          <intron i_serial="4" don_prob="0.889" acc_prob="0.984">
            <gDNA_intron_boundary i_start="25226" i_stop="25303" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.994">
            <gDNA_exon_boundary e_start="25304" e_stop="26245" e_length="942"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="26246" i_stop="26329" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26330" e_stop="26718" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24306" stop="24415"/>
              <exon start="24497" stop="24648"/>
              <exon start="24727" stop="24971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E458289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24927" stop="24971"/>
              <exon start="25097" stop="25225"/>
              <exon start="25304" stop="25949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24928" stop="24971"/>
              <exon start="25097" stop="25225"/>
              <exon start="25304" stop="25704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307720" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25854" stop="26245"/>
              <exon start="26330" stop="26718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATGCACAAAAACATAGAAATGAAGAATTATATAAGTTGTCTCATTGTGGTTATATTATCACTACTATCTTCTTTTGCTAATGCAGAATCTCACAAACATGATTTTACT : GTTCAAGAAACTAGTGTAACTAGGCTATGCAGAACCAAGAAAATAATTACAGTAAATGGACAATTTCCAGGGCCAACTTTGACAGTTCGAAACGGAGATACAGTGGTTGTTAATGTTGTTAATAGAGCACGTTACAACGTTACTATCCATTG : GCATGGAATTCGTCAAATGCGAACACCATGGGCTGATGGGCCTGAGTATGTAACACAATGCCCAATTAGACCAGGAGGATCTTACACATATAGATTTACTATTGAAAATCAAGAGGGTACATTGTGGTGGCATGCTCACAGCAAATGGCTTAGAGCTACTGTTTATGGAGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTCCCTTTTTCACTGCCCCAGAAAGATTTTCCTGTTATTCTTG : GGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAG : GTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCTCTCGTGCCTATGCCACAGTCAGAAATGGGCAATTTGATAACACAACTACCACTGCAATCCTTGAGTACAAAAATTTGAAATCAGGCGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACTGCTTTTGCTAACAGATTGAGGGGAACTCCTAACAGTAATAGAGTTCCCAATCAGATTGATGACAACTTGTTTTTCACTGTTGGACTAGGCTTAGTGAACTGTACCCGTGGCCCAAGATGTCAAGGGCCTAATAATACACGATTTGCTGCTAGCGTGAACAATGTTTCCTTCATTTTTCCTAGTAAAACTTCATTACTGCAGGCCTATTACCAAAAAACTCCAGGGATTTACACATTGGACTTTCCACGCGTTCCACCGGTGCAATTTGATTACACGGGCAATGTTTCACGTGGACTTTGGCAACCAACATTTGGAACTAAGTTGTACAAGCTCAAATTTGGTTCTAATGTACAAATTGTGTTGCAAGATACTGCTATCTTCTCAACAGAGGATCACCCTATACATCTTCACGGTTACCATTTTTGGGTCGTTGGACAAGGTTTTGGTAACTTTAATGCTCAAACTGATACTGCCAACTTTAACTTGAATGATCCACCAGTAAGGAACACAATCGATGTTCCTGTTGGTGGATGGGCAGTCATCCGTTTCGTTGCTGATAATCCAG : GGGTTTGGTTGTTACACTGCCACATTGATTCTCATTTGGCTTGGGGCCTAGCTATGGCATTCATCGTCGAAAATGGAATAGGAGAGAAACAGACAATGGAACCACCTCCACCAGATCTACCACAATGCTAAAAATATATAGTCAATTGTTTAGATTCAGAAGAATCATATGTTTTGCAATTATAGCAAATTGTCCTTGTTATGTTTTTGTCCTAAAGTTAAGCAGTTATTAGTGTGTGTATTTGATATTTCTCCTATGTGTGAGCCATCAGGGTTTAGCCTTGGCTTTATTGAGTTTGAAATTCATTGTCTATGATATATGTGCAAGTACCTCTCAAGAAAGAGTCATTTTGACTTCATATATTATATAGTAATCACAATCTTAGTTTA</gDNA_template>
            <first_frame> K  C  T  K  T  *  K  *  R  I  I  *  V  V  S  L  W  L  Y  Y  H  Y  Y  L  L  L  L  M  Q  N  L  T  N  M  I  L  L :   F  K  K  L  V  *  L  G  Y  A  E  P  R  K  *  L  Q  *  M  D  N  F  Q  G  Q  L  *  Q  F  E  T  E  I  Q  W  L  L  M  L  L  I  E  H  V  T  T  L  L  S  I   : G  M  E  F  V  K  C  E  H  H  G  L  M  G  L  S  M  *  H  N  A  Q  L  D  Q  E  D  L  T  H  I  D  L  L  L  K  I  K  R  V  H  C  G  G  M  L  T  A  N  G  L  E  L  L  F  M  E  H  *  L  F  Y  L  N  R  V  L  I  S  L  F  H  C  P  R  K  I  F  L  L  F  L  :  G  N  G  G  T  E  T  L  L  Q  Y  K  D  K  H  N  L  L  E  Q  L  L  I  I  L  M  H  I  L  L  M  V  N  L  V  T  Y  T  D  A  L  H  K  :  V  L  *  N  T  L  *  I  R  E  N  Q  F  S  *  G  *  S  T  L  H  S  I  N  N  F  S  S  Q  L  Q  T  T  C  S  L  L  W  V  L  M  L  L  T  T  S  L  L  Q  L  M  S  L  W  L  D  L  D  K  Q  L  M  *  F  *  L  L  I  S  P  L  A  D  T  T  W  P  L  V  P  M  P  Q  S  E  M  G  N  L  I  T  Q  L  P  L  Q  S  L  S  T  K  I  *  N  Q  A  R  I  Q  G  L  Y  C  L  N  F  L  P  S  M  I  Q  P  Q  P  L  L  L  L  T  D  *  G  E  L  L  T  V  I  E  F  P  I  R  L  M  T  T  C  F  S  L  L  D  *  A  *  *  T  V  P  V  A  Q  D  V  K  G  L  I  I  H  D  L  L  L  A  *  T  M  F  P  S  F  F  L  V  K  L  H  Y  C  R  P  I  T  K  K  L  Q  G  F  T  H  W  T  F  H  A  F  H  R  C  N  L  I  T  R  A  M  F  H  V  D  F  G  N  Q  H  L  E  L  S  C  T  S  S  N  L  V  L  M  Y  K  L  C  C  K  I  L  L  S  S  Q  Q  R  I  T  L  Y  I  F  T  V  T  I  F  G  S  L  D  K  V  L  V  T  L  M  L  K  L  I  L  P  T  L  T  *  M  I  H  Q  *  G  T  Q  S  M  F  L  L  V  D  G  Q  S  S  V  S  L  L  I  I  Q  :  G  F  G  C  Y  T  A  T  L  I  L  I  W  L  G  A  *  L  W  H  S  S  S  K  M  E  *  E  R  N  R  Q  W  N  H  L  H  Q  I  Y  H  N  A  K  N  I  *  S  I  V  *  I  Q  K  N  H  M  F  C  N  Y  S  K  L  S  L  L  C  F  C  P  K  V  K  Q  L  L  V  C  V  F  D  I  S  P  M  C  E  P  S  G  F  S  L  G  F  I  E  F  E  I  H  C  L  *  Y  M  C  K  Y  L  S  R  K  S  H  F  D  F  I  Y  Y  I  V  I  T  I  L  V   </first_frame>
            <second_frame>  N  A  Q  K  H  R  N  E  E  L  Y  K  L  S  H  C  G  Y  I  I  T  T  I  F  F  C  *  C  R  I  S  Q  T  *  F  Y   : C  S  R  N  *  C  N  *  A  M  Q  N  Q  E  N  N  Y  S  K  W  T  I  S  R  A  N  F  D  S  S  K  R  R  Y  S  G  C  *  C  C  *  *  S  T  L  Q  R  Y  Y  P  L  :  A  W  N  S  S  N  A  N  T  M  G  *  W  A  *  V  C  N  T  M  P  N  *  T  R  R  I  L  H  I  *  I  Y  Y  *  K  S  R  G  Y  I  V  V  A  C  S  Q  Q  M  A  *  S  Y  C  L  W  S  I  S  Y  F  T  *  T  G  F  *  F  P  F  F  T  A  P  E  R  F  S  C  Y  S  W :   G  M  V  E  Q  R  H  Y  C  S  T  K  T  S  T  I  Y  W  S  S  S  *  *  F  *  C  I  Y  Y  *  W  S  T  W  *  P  I  Q  M  L  Y  T  R :   Y  C  E  I  L  C  E  S  G  R  I  S  S  P  E  G  D  Q  R  C  T  Q  S  T  T  F  L  L  S  C  K  P  H  A  H  C  C  G  Y  *  C  Y  L  Q  Q  A  F  Y  N  *  C  H  Y  G  W  T  W  T  N  N  *  C  N  S  N  C  *  S  V  P  W  P  I  L  H  G  L  S  C  L  C  H  S  Q  K  W  A  I  *  *  H  N  Y  H  C  N  P  *  V  Q  K  F  E  I  R  R  E  F  K  A  F  I  A  S  T  S  C  L  Q  *  Y  S  H  S  H  C  F  C  *  Q  I  E  G  N  S  *  Q  *  *  S  S  Q  S  D  *  *  Q  L  V  F  H  C  W  T  R  L  S  E  L  Y  P  W  P  K  M  S  R  A  *  *  Y  T  I  C  C  *  R  E  Q  C  F  L  H  F  S  *  *  N  F  I  T  A  G  L  L  P  K  N  S  R  D  L  H  I  G  L  S  T  R  S  T  G  A  I  *  L  H  G  Q  C  F  T  W  T  L  A  T  N  I  W  N  *  V  V  Q  A  Q  I  W  F  *  C  T  N  C  V  A  R  Y  C  Y  L  L  N  R  G  S  P  Y  T  S  S  R  L  P  F  L  G  R  W  T  R  F  W  *  L  *  C  S  N  *  Y  C  Q  L  *  L  E  *  S  T  S  K  E  H  N  R  C  S  C  W  W  M  G  S  H  P  F  R  C  *  *  S  R :   G  L  V  V  T  L  P  H  *  F  S  F  G  L  G  P  S  Y  G  I  H  R  R  K  W  N  R  R  E  T  D  N  G  T  T  S  T  R  S  T  T  M  L  K  I  Y  S  Q  L  F  R  F  R  R  I  I  C  F  A  I  I  A  N  C  P  C  Y  V  F  V  L  K  L  S  S  Y  *  C  V  Y  L  I  F  L  L  C  V  S  H  Q  G  L  A  L  A  L  L  S  L  K  F  I  V  Y  D  I  C  A  S  T  S  Q  E  R  V  I  L  T  S  Y  I  I  *  *  S  Q  S  *  F  </second_frame>
            <third_frame>   M  H  K  N  I  E  M  K  N  Y  I  S  C  L  I  V  V  I  L  S  L  L  S  S  F  A  N  A  E  S  H  K  H  D  F  T  :  V  Q  E  T  S  V  T  R  L  C  R  T  K  K  I  I  T  V  N  G  Q  F  P  G  P  T  L  T  V  R  N  G  D  T  V  V  V  N  V  V  N  R  A  R  Y  N  V  T  I  H  W :   H  G  I  R  Q  M  R  T  P  W  A  D  G  P  E  Y  V  T  Q  C  P  I  R  P  G  G  S  Y  T  Y  R  F  T  I  E  N  Q  E  G  T  L  W  W  H  A  H  S  K  W  L  R  A  T  V  Y  G  A  L  V  I  L  P  K  Q  G  S  N  F  P  F  S  L  P  Q  K  D  F  P  V  I  L   : G  E  W  W  N  R  D  I  I  A  V  Q  R  Q  A  Q  F  T  G  A  A  P  N  N  S  D  A  Y  T  I  N  G  Q  P  G  D  L  Y  R  C  S  T  Q   : G  T  V  K  Y  S  V  N  P  G  E  S  V  L  L  R  V  I  N  A  A  L  N  Q  Q  L  F  F  S  V  A  N  H  M  L  T  V  V  G  I  D  A  T  Y  N  K  P  F  T  T  N  V  I  M  V  G  P  G  Q  T  T  N  V  I  L  T  A  N  Q  S  P  G  R  Y  Y  M  A  S  R  A  Y  A  T  V  R  N  G  Q  F  D  N  T  T  T  T  A  I  L  E  Y  K  N  L  K  S  G  A  N  S  R  P  L  L  P  Q  L  P  A  F  N  D  T  A  T  A  T  A  F  A  N  R  L  R  G  T  P  N  S  N  R  V  P  N  Q  I  D  D  N  L  F  F  T  V  G  L  G  L  V  N  C  T  R  G  P  R  C  Q  G  P  N  N  T  R  F  A  A  S  V  N  N  V  S  F  I  F  P  S  K  T  S  L  L  Q  A  Y  Y  Q  K  T  P  G  I  Y  T  L  D  F  P  R  V  P  P  V  Q  F  D  Y  T  G  N  V  S  R  G  L  W  Q  P  T  F  G  T  K  L  Y  K  L  K  F  G  S  N  V  Q  I  V  L  Q  D  T  A  I  F  S  T  E  D  H  P  I  H  L  H  G  Y  H  F  W  V  V  G  Q  G  F  G  N  F  N  A  Q  T  D  T  A  N  F  N  L  N  D  P  P  V  R  N  T  I  D  V  P  V  G  G  W  A  V  I  R  F  V  A  D  N  P   : G  V  W  L  L  H  C  H  I  D  S  H  L  A  W  G  L  A  M  A  F  I  V  E  N  G  I  G  E  K  Q  T  M  E  P  P  P  P  D  L  P  Q  C  *  K  Y  I  V  N  C  L  D  S  E  E  S  Y  V  L  Q  L  *  Q  I  V  L  V  M  F  L  S  *  S  *  A  V  I  S  V  C  I  *  Y  F  S  Y  V  *  A  I  R  V  *  P  W  L  Y  *  V  *  N  S  L  S  M  I  Y  V  Q  V  P  L  K  K  E  S  F  *  L  H  I  L  Y  S  N  H  N  L  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24308" stop="24415"/>
                    <exon start="24497" stop="24648"/>
                    <exon start="24727" stop="24971"/>
                    <exon start="25097" stop="25225"/>
                    <exon start="25304" stop="26245"/>
                    <exon start="26330" stop="26460"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1704</number_coding_nucleotides>
                  <number_encoded_amino_acids>568</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MHKNIEMKNYISCLIVVILSLLSSFANAESHKHDFTVQETSVTRLCRTKKIITVNGQFPGPTLTVRNGDTVVVNVVNRARYNVTIHWHGIRQMRTPWADGPEYVTQCPIRPGGSYTYRFTIENQEGTLWWHAHSKWLRATVYGALVILPKQGSNFPFSLPQKDFPVILGEWWNRDIIAVQRQAQFTGAAPNNSDAYTINGQPGDLYRCSTQGTVKYSVNPGESVLLRVINAALNQQLFFSVANHMLTVVGIDATYNKPFTTNVIMVGPGQTTNVILTANQSPGRYYMASRAYATVRNGQFDNTTTTAILEYKNLKSGANSRPLLPQLPAFNDTATATAFANRLRGTPNSNRVPNQIDDNLFFTVGLGLVNCTRGPRCQGPNNTRFAASVNNVSFIFPSKTSLLQAYYQKTPGIYTLDFPRVPPVQFDYTGNVSRGLWQPTFGTKLYKLKFGSNVQIVLQDTAIFSTEDHPIHLHGYHFWVVGQGFGNFNAQTDTANFNLNDPPVRNTIDVPVGGWAVIRFVADNPGVWLLHCHIDSHLAWGLAMAFIVENGIGEKQTMEPPPPDLPQC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="30641" PGL_stop="31526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30641" e_stop="30825"/>
            <exon e_start="30943" e_stop="31071"/>
            <exon e_start="31150" e_stop="31526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.973"/>
          <exon-intron don_prob="0.889" acc_prob="0.984" e_score="0.977"/>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="30641" e_stop="30825" e_length="185"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30826" i_stop="30942" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="30943" e_stop="31071" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.889" acc_prob="0.984">
            <gDNA_intron_boundary i_start="31072" i_stop="31149" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="31150" e_stop="31526" e_length="377"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30641" stop="30825"/>
              <exon start="30943" stop="31071"/>
              <exon start="31150" stop="31485"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E460226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30745" stop="30825"/>
              <exon start="30943" stop="31071"/>
              <exon start="31150" stop="31526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATTAGACCAGGAGGATTTTACACATACAGATTTACTATTGAAAATCAAGAGGGTACATTGTGGTGGCATGCTCACAGCAAATGGCTTAGAGCTACTGTTTATGGAGCATTAGTTATTTTACCTAAACAGGGTTCTAATTTCCCCTTTTCACTGCCCCAAAAAGATTTTCCTGTTATTCTTG : GGGAATGGTGGAACAGAGACATTATTGCAGTACAAAGACAAGCACAATTTACTGGAGCAGCTCCTAATAATTCTGATGCATATACTATTAATGGTCAACCTGGTGACCTATACAGATGCTCTACACAAG : GTACTGTGAAATACTCTGTGAATCCGGGAGAATCAGTTCTCCTGAGGGTGATCAACGCTGCACTCAATCAACAACTTTTCTTCTCAGTTGCAAACCACATGCTCACTGTTGTGGGTATTGATGCTACTTACAACAAGCCTTTTACAACTAATGTCATTATGGTTGGACCTGGACAAACAACTAATGTAATTCTAACTGCTAATCAGTCCCCTGGCCGATACTACATGGCCGCTCGTGCCTATGCCACAGTTAGAAATGGGCAATTTGATAACACTACTACCACTGCCATACTTGAGTACACAAATGTCAACTCGGGGGCGAATTCAAGGCCTTTATTGCCTCAACTTCCTGCCTTCAATGATACAGCCACAGCCACT</gDNA_template>
            <first_frame> P  N  *  T  R  R  I  L  H  I  Q  I  Y  Y  *  K  S  R  G  Y  I  V  V  A  C  S  Q  Q  M  A  *  S  Y  C  L  W  S  I  S  Y  F  T  *  T  G  F  *  F  P  L  F  T  A  P  K  R  F  S  C  Y  S  W :   G  M  V  E  Q  R  H  Y  C  S  T  K  T  S  T  I  Y  W  S  S  S  *  *  F  *  C  I  Y  Y  *  W  S  T  W  *  P  I  Q  M  L  Y  T  R :   Y  C  E  I  L  C  E  S  G  R  I  S  S  P  E  G  D  Q  R  C  T  Q  S  T  T  F  L  L  S  C  K  P  H  A  H  C  C  G  Y  *  C  Y  L  Q  Q  A  F  Y  N  *  C  H  Y  G  W  T  W  T  N  N  *  C  N  S  N  C  *  S  V  P  W  P  I  L  H  G  R  S  C  L  C  H  S  *  K  W  A  I  *  *  H  Y  Y  H  C  H  T  *  V  H  K  C  Q  L  G  G  E  F  K  A  F  I  A  S  T  S  C  L  Q  *  Y  S  H  S  H  </first_frame>
            <second_frame>  P  I  R  P  G  G  F  Y  T  Y  R  F  T  I  E  N  Q  E  G  T  L  W  W  H  A  H  S  K  W  L  R  A  T  V  Y  G  A  L  V  I  L  P  K  Q  G  S  N  F  P  F  S  L  P  Q  K  D  F  P  V  I  L   : G  E  W  W  N  R  D  I  I  A  V  Q  R  Q  A  Q  F  T  G  A  A  P  N  N  S  D  A  Y  T  I  N  G  Q  P  G  D  L  Y  R  C  S  T  Q   : G  T  V  K  Y  S  V  N  P  G  E  S  V  L  L  R  V  I  N  A  A  L  N  Q  Q  L  F  F  S  V  A  N  H  M  L  T  V  V  G  I  D  A  T  Y  N  K  P  F  T  T  N  V  I  M  V  G  P  G  Q  T  T  N  V  I  L  T  A  N  Q  S  P  G  R  Y  Y  M  A  A  R  A  Y  A  T  V  R  N  G  Q  F  D  N  T  T  T  T  A  I  L  E  Y  T  N  V  N  S  G  A  N  S  R  P  L  L  P  Q  L  P  A  F  N  D  T  A  T  A  T </second_frame>
            <third_frame>   Q  L  D  Q  E  D  F  T  H  T  D  L  L  L  K  I  K  R  V  H  C  G  G  M  L  T  A  N  G  L  E  L  L  F  M  E  H  *  L  F  Y  L  N  R  V  L  I  S  P  F  H  C  P  K  K  I  F  L  L  F  L  :  G  N  G  G  T  E  T  L  L  Q  Y  K  D  K  H  N  L  L  E  Q  L  L  I  I  L  M  H  I  L  L  M  V  N  L  V  T  Y  T  D  A  L  H  K  :  V  L  *  N  T  L  *  I  R  E  N  Q  F  S  *  G  *  S  T  L  H  S  I  N  N  F  S  S  Q  L  Q  T  T  C  S  L  L  W  V  L  M  L  L  T  T  S  L  L  Q  L  M  S  L  W  L  D  L  D  K  Q  L  M  *  F  *  L  L  I  S  P  L  A  D  T  T  W  P  L  V  P  M  P  Q  L  E  M  G  N  L  I  T  L  L  P  L  P  Y  L  S  T  Q  M  S  T  R  G  R  I  Q  G  L  Y  C  L  N  F  L  P  S  M  I  Q  P  Q  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30642" stop="30825"/>
                    <exon start="30943" stop="31071"/>
                    <exon start="31150" stop="31526"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PIRPGGFYTYRFTIENQEGTLWWHAHSKWLRATVYGALVILPKQGSNFPFSLPQKDFPVILGEWWNRDIIAVQRQAQFTGAAPNNSDAYTINGQPGDLYRCSTQGTVKYSVNPGESVLLRVINAALNQQLFFSVANHMLTVVGIDATYNKPFTTNVIMVGPGQTTNVILTANQSPGRYYMAARAYATVRNGQFDNTTTTAILEYTNVNSGANSRPLLPQLPAFNDTATAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="35295" PGL_stop="32908"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34252" e_stop="32908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="34252" e_stop="32908" e_length="1345"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34252" stop="33591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33825" stop="33262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="32908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33712" stop="33108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33665" stop="33409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33511" stop="32952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33460" stop="32980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAACAATGATTAGTTAATCTCTTTGAGCAGGGTCACGGTGTGCAAGGTGTTATCACCAAAATGTCATTTGTTTCAAGTTTCAAAGAACGTATTGATTATTATCTTAGTTTATCAACATTTATAGCTTGGCTTCTTTAGTTTGCTCAAATATTTGATGCTGTTAACATATCTGCCCTAAGAGTGATTTGATGCTAAGTTGTCCAGTCCAAATATTATTAAAAAAAACTATAGATTAATCCTTATGGTGAAAAAGCTTTGCTTCCATAAGAAACGGGCAAGTTGTAAGTAGCTGAGAGGAAGTTATTGAACTCCTTCCATGATTAAAAAAATAGTTACTTTATATATAATCTGAGTTCACTTTGATACTTGAGCTGGGTTTTATTCTAAGAGCTGTAGGGAAAAAGTAGTTCTTTGTTTTCAGTGTTGAATGCAAAGTTTGTGTTCATGTTAGTGGCTTTGCTGTTTTCAATGTTAATTGTGATTTTCACTTTACAGCCCCTTGATGGTACAGTTAGATGAGACTGTTTTGATGCAGGTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCTGGTTTGGAGGGCTTTTTGGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGTAGCAAGACACAGGTTTTAGAGAGCTTTGATGCTCCTAACCCACCT</gDNA_template>
            <first_frame> R  N  N  D  *  L  I  S  L  S  R  V  T  V  C  K  V  L  S  P  K  C  H  L  F  Q  V  S  K  N  V  L  I  I  I  L  V  Y  Q  H  L  *  L  G  F  F  S  L  L  K  Y  L  M  L  L  T  Y  L  P  *  E  *  F  D  A  K  L  S  S  P  N  I  I  K  K  N  Y  R  L  I  L  M  V  K  K  L  C  F  H  K  K  R  A  S  C  K  *  L  R  G  S  Y  *  T  P  S  M  I  K  K  I  V  T  L  Y  I  I  *  V  H  F  D  T  *  A  G  F  Y  S  K  S  C  R  E  K  V  V  L  C  F  Q  C  *  M  Q  S  L  C  S  C  *  W  L  C  C  F  Q  C  *  L  *  F  S  L  Y  S  P  L  M  V  Q  L  D  E  T  V  L  M  Q  V  N  S  L  N  *  T  N  Q  F  L  G  K  *  K  H  V  C  L  V  G  V  I  P  F  S  P  F  P  S  *  I  V  L  V  P  C  Y  N  G  N  T  G  D  L  S  *  T  M  P  *  P  Y  T  *  *  C  W  R  S  I  W  Y  G  C  C  W  R  F  S  L  P  L  L  K  R  H  L  Q  L  T  K  R  *  A  L  D  W  W  Y  T  G  S  A  H  E  C  S  S  Y  W  G  *  F  C  C  V  G  W  P  I  F  H  L  *  L  Y  N  G  L  S  P  A  E  R  R  S  L  E  L  N  Y  C  W  C  S  N  W  W  L  S  T  D  A  A  G  T  W  C  C  F  *  I  S  I  V  W  W  S  F  T  C  V  D  R  G  S  W  N  H  V  K  *  S  H  E  C  T  P  E  F  P  T  H  G  *  P  T  T  K  C  P  W  G  A  W  I  S  T  W  A  V  A  W  S  T  N  E  A  A  S  W  S  S  S  S  K  Y  *  W  Y  D  D  R  I  F  S  A  S  L  F  F  L  D  I  L  V  W  R  A  F  W  R  W  K  E  R  G  D  C  A  K  R  W  *  Q  D  T  G  F  R  E  L  *  C  S  *  P  T  </first_frame>
            <second_frame>  E  T  M  I  S  *  S  L  *  A  G  S  R  C  A  R  C  Y  H  Q  N  V  I  C  F  K  F  Q  R  T  Y  *  L  L  S  *  F  I  N  I  Y  S  L  A  S  L  V  C  S  N  I  *  C  C  *  H  I  C  P  K  S  D  L  M  L  S  C  P  V  Q  I  L  L  K  K  T  I  D  *  S  L  W  *  K  S  F  A  S  I  R  N  G  Q  V  V  S  S  *  E  E  V  I  E  L  L  P  *  L  K  K  *  L  L  Y  I  *  S  E  F  T  L  I  L  E  L  G  F  I  L  R  A  V  G  K  K  *  F  F  V  F  S  V  E  C  K  V  C  V  H  V  S  G  F  A  V  F  N  V  N  C  D  F  H  F  T  A  P  *  W  Y  S  *  M  R  L  F  *  C  R  *  I  H  *  I  K  P  I  S  S  L  E  S  K  S  T  S  A  W  L  V  S  S  P  L  A  L  F  P  P  R  *  C  L  S  P  V  T  M  G  T  P  E  T  S  R  E  P  C  P  D  R  I  L  D  D  V  G  G  A  F  G  M  G  A  V  G  G  S  A  F  H  F  L  K  G  I  Y  N  S  P  K  G  E  R  L  I  G  G  T  Q  A  V  R  M  N  A  P  R  I  G  G  S  F  A  V  W  G  G  L  F  S  T  F  D  C  T  M  V  Y  L  R  Q  K  E  D  P  W  N  S  I  I  A  G  A  A  T  G  G  F  L  Q  M  R  Q  G  L  G  A  A  S  R  S  A  L  F  G  G  V  L  L  A  L  I  E  G  A  G  I  M  L  N  K  V  M  S  A  P  Q  N  F  P  P  M  D  D  P  L  P  N  V  P  G  V  P  G  Y  P  P  G  Q  L  P  G  Q  P  M  R  Q  L  P  G  Q  A  P  V  S  I  D  G  M  M  T  E  S  S  A  P  A  S  S  S  S  T  S  W  F  G  G  L  F  G  G  G  K  K  E  E  T  A  P  N  G  G  S  K  T  Q  V  L  E  S  F  D  A  P  N  P  P </second_frame>
            <third_frame>   K  Q  *  L  V  N  L  F  E  Q  G  H  G  V  Q  G  V  I  T  K  M  S  F  V  S  S  F  K  E  R  I  D  Y  Y  L  S  L  S  T  F  I  A  W  L  L  *  F  A  Q  I  F  D  A  V  N  I  S  A  L  R  V  I  *  C  *  V  V  Q  S  K  Y  Y  *  K  K  L  *  I  N  P  Y  G  E  K  A  L  L  P  *  E  T  G  K  L  *  V  A  E  R  K  L  L  N  S  F  H  D  *  K  N  S  Y  F  I  Y  N  L  S  S  L  *  Y  L  S  W  V  L  F  *  E  L  *  G  K  S  S  S  L  F  S  V  L  N  A  K  F  V  F  M  L  V  A  L  L  F  S  M  L  I  V  I  F  T  L  Q  P  L  D  G  T  V  R  *  D  C  F  D  A  G  E  F  I  K  L  N  Q  S  V  P  W  K  V  K  A  R  L  L  G  W  C  H  P  L  *  P  F  S  L  L  D  S  A  C  P  L  L  Q  W  E  H  R  R  P  L  V  N  H  A  L  T  V  Y  L  M  M  L  A  E  H  L  V  W  V  L  L  E  V  Q  P  S  T  S  *  K  A  F  T  T  H  Q  K  V  S  A  *  L  V  V  H  R  Q  C  A  *  M  L  L  V  L  G  V  V  L  L  C  G  V  A  Y  F  P  P  L  I  V  Q  W  F  I  S  G  R  K  K  I  L  G  T  Q  L  L  L  V  Q  Q  L  V  A  F  Y  R  C  G  R  D  L  V  L  L  L  D  Q  H  C  L  V  E  F  Y  L  R  *  *  R  E  L  E  S  C  *  I  K  S  *  V  H  P  R  I  S  H  P  W  M  T  H  Y  Q  M  S  L  G  C  L  D  I  H  L  G  S  C  L  V  N  Q  *  G  S  F  L  V  K  L  Q  *  V  L  M  V  *  *  Q  N  L  Q  R  Q  P  L  L  P  R  H  P  G  L  E  G  F  L  E  V  E  R  K  R  R  L  R  Q  T  V  V  A  R  H  R  F  *  R  A  L  M  L  L  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33618" stop="32908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSPVTMGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERLIGGTQAVRMNAPRIGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLQMRQGLGAASRSALFGGVLLALIEGAGIMLNKVMSAPQNFPPMDDPLPNVPGVPGYPPGQLPGQPMRQLPGQAPVSIDGMMTESSAPASSSSTSWFGGLFGGGKKEETAPNGGSKTQVLESFDAPNPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35295" e_stop="35254"/>
            <exon e_start="33715" e_stop="32908"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.632" e_score="0.952"/>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="35295" e_stop="35254" e_length="42"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.632">
            <gDNA_intron_boundary i_start="35253" i_stop="33716" i_length="1538"/>
          </intron>
          <exon e_serial="2" e_score="0.910">
            <gDNA_exon_boundary e_start="33715" e_stop="32908" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35295" stop="35254"/>
              <exon start="33715" stop="32953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35286" stop="35254"/>
              <exon start="33715" stop="33195"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E564431" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="32908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E623495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E586067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33049"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728299" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33099"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33715" stop="33233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33712" stop="33108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453217" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33665" stop="33409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E580805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33511" stop="32952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33460" stop="32980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E444386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCTTCAACAAGTTCTTGTTTTCTCTCTTACTGTATCGCAG : GTGAATTCATTAAATTAAACCAATCAGTTCCTTGGAAAGTAAAAGCACGTCTGCTTGGTTGGTGTCATCCCCTTTAGCCCTTTTCCCTCCTAGATAGTGCTTGTCCCCTGTTACAATGGGAACACCGGAGACCTCTCGTGAACCATGCCCTGACCGTATACTTGATGATGTTGGCGGAGCATTTGGTATGGGTGCTGTTGGAGGTTCAGCCTTCCACTTCTTAAAAGGCATTTACAACTCACCAAAAGGTGAGCGCTTGATTGGTGGTACACAGGCAGTGCGCATGAATGCTCCTCGTATTGGGGGTAGTTTTGCTGTGTGGGGTGGCCTATTTTCCACCTTTGATTGTACAATGGTTTATCTCCGGCAGAAAGAAGATCCTTGGAACTCAATTATTGCTGGTGCAGCAACTGGTGGCTTTCTACAGATGCGGCAGGGACTTGGTGCTGCTTCTAGATCAGCATTGTTTGGTGGAGTTTTACTTGCGTTGATAGAGGGAGCTGGAATCATGTTAAATAAAGTCATGAGTGCACCCCAGAATTTCCCACCCATGGATGACCCACTACCAAATGTCCCTGGGGTGCCTGGATATCCACCTGGGCAGTTGCCTGGTCAACCAATGAGGCAGCTTCCTGGTCAAGCTCCAGTAAGTATTGATGGTATGATGACAGAATCTTCAGCGCCAGCCTCTTCTTCCTCGACATCCTGGTTTGGAGGGCTTTTTGGAGGTGGAAAGAAAGAGGAGACTGCGCCAAACGGTGGTAGCAAGACACAGGTTTTAGAGAGCTTTGATGCTCCTAACCCACCT</gDNA_template>
            <first_frame> L  L  Q  Q  V  L  V  F  S  L  T  V  S  Q  :  V  N  S  L  N  *  T  N  Q  F  L  G  K  *  K  H  V  C  L  V  G  V  I  P  F  S  P  F  P  S  *  I  V  L  V  P  C  Y  N  G  N  T  G  D  L  S  *  T  M  P  *  P  Y  T  *  *  C  W  R  S  I  W  Y  G  C  C  W  R  F  S  L  P  L  L  K  R  H  L  Q  L  T  K  R  *  A  L  D  W  W  Y  T  G  S  A  H  E  C  S  S  Y  W  G  *  F  C  C  V  G  W  P  I  F  H  L  *  L  Y  N  G  L  S  P  A  E  R  R  S  L  E  L  N  Y  C  W  C  S  N  W  W  L  S  T  D  A  A  G  T  W  C  C  F  *  I  S  I  V  W  W  S  F  T  C  V  D  R  G  S  W  N  H  V  K  *  S  H  E  C  T  P  E  F  P  T  H  G  *  P  T  T  K  C  P  W  G  A  W  I  S  T  W  A  V  A  W  S  T  N  E  A  A  S  W  S  S  S  S  K  Y  *  W  Y  D  D  R  I  F  S  A  S  L  F  F  L  D  I  L  V  W  R  A  F  W  R  W  K  E  R  G  D  C  A  K  R  W  *  Q  D  T  G  F  R  E  L  *  C  S  *  P  T  </first_frame>
            <second_frame>  F  F  N  K  F  L  F  S  L  L  L  Y  R  R :   *  I  H  *  I  K  P  I  S  S  L  E  S  K  S  T  S  A  W  L  V  S  S  P  L  A  L  F  P  P  R  *  C  L  S  P  V  T  M  G  T  P  E  T  S  R  E  P  C  P  D  R  I  L  D  D  V  G  G  A  F  G  M  G  A  V  G  G  S  A  F  H  F  L  K  G  I  Y  N  S  P  K  G  E  R  L  I  G  G  T  Q  A  V  R  M  N  A  P  R  I  G  G  S  F  A  V  W  G  G  L  F  S  T  F  D  C  T  M  V  Y  L  R  Q  K  E  D  P  W  N  S  I  I  A  G  A  A  T  G  G  F  L  Q  M  R  Q  G  L  G  A  A  S  R  S  A  L  F  G  G  V  L  L  A  L  I  E  G  A  G  I  M  L  N  K  V  M  S  A  P  Q  N  F  P  P  M  D  D  P  L  P  N  V  P  G  V  P  G  Y  P  P  G  Q  L  P  G  Q  P  M  R  Q  L  P  G  Q  A  P  V  S  I  D  G  M  M  T  E  S  S  A  P  A  S  S  S  S  T  S  W  F  G  G  L  F  G  G  G  K  K  E  E  T  A  P  N  G  G  S  K  T  Q  V  L  E  S  F  D  A  P  N  P  P </second_frame>
            <third_frame>   S  S  T  S  S  C  F  L  S  Y  C  I  A   : G  E  F  I  K  L  N  Q  S  V  P  W  K  V  K  A  R  L  L  G  W  C  H  P  L  *  P  F  S  L  L  D  S  A  C  P  L  L  Q  W  E  H  R  R  P  L  V  N  H  A  L  T  V  Y  L  M  M  L  A  E  H  L  V  W  V  L  L  E  V  Q  P  S  T  S  *  K  A  F  T  T  H  Q  K  V  S  A  *  L  V  V  H  R  Q  C  A  *  M  L  L  V  L  G  V  V  L  L  C  G  V  A  Y  F  P  P  L  I  V  Q  W  F  I  S  G  R  K  K  I  L  G  T  Q  L  L  L  V  Q  Q  L  V  A  F  Y  R  C  G  R  D  L  V  L  L  L  D  Q  H  C  L  V  E  F  Y  L  R  *  *  R  E  L  E  S  C  *  I  K  S  *  V  H  P  R  I  S  H  P  W  M  T  H  Y  Q  M  S  L  G  C  L  D  I  H  L  G  S  C  L  V  N  Q  *  G  S  F  L  V  K  L  Q  *  V  L  M  V  *  *  Q  N  L  Q  R  Q  P  L  L  P  R  H  P  G  L  E  G  F  L  E  V  E  R  K  R  R  L  R  Q  T  V  V  A  R  H  R  F  *  R  A  L  M  L  L  T  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33618" stop="32908"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>711</number_coding_nucleotides>
                  <number_encoded_amino_acids>237</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSPVTMGTPETSREPCPDRILDDVGGAFGMGAVGGSAFHFLKGIYNSPKGERLIGGTQAVRMNAPRIGGSFAVWGGLFSTFDCTMVYLRQKEDPWNSIIAGAATGGFLQMRQGLGAASRSALFGGVLLALIEGAGIMLNKVMSAPQNFPPMDDPLPNVPGVPGYPPGQLPGQPMRQLPGQAPVSIDGMMTESSAPASSSSTSWFGGLFGGGKKEETAPNGGSKTQVLESFDAPNPP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36930" PGL_stop="40907"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36930" e_stop="36951"/>
            <exon e_start="37746" e_stop="37846"/>
            <exon e_start="37968" e_stop="38081"/>
            <exon e_start="38272" e_stop="38484"/>
            <exon e_start="38876" e_stop="39011"/>
            <exon e_start="39099" e_stop="39262"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.655" acc_prob="0.739" e_score="0.995"/>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="0.978"/>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36930" e_stop="36951" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="36952" i_stop="37745" i_length="794"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="37746" e_stop="37846" e_length="101"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.999">
            <gDNA_intron_boundary i_start="37847" i_stop="37967" i_length="121"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37968" e_stop="38081" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.994">
            <gDNA_intron_boundary i_start="38082" i_stop="38271" i_length="190"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="38272" e_stop="38484" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.655" acc_prob="0.739">
            <gDNA_intron_boundary i_start="38485" i_stop="38875" i_length="391"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="38876" e_stop="39011" e_length="136"/>
          </exon>
          <intron i_serial="5" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39012" i_stop="39098" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="0.951">
            <gDNA_exon_boundary e_start="39099" e_stop="39262" e_length="164"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36930" stop="36951"/>
              <exon start="37746" stop="37846"/>
              <exon start="37968" stop="38081"/>
              <exon start="38272" stop="38484"/>
              <exon start="38876" stop="38913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346125" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37787" stop="37846"/>
              <exon start="37968" stop="38081"/>
              <exon start="38272" stop="38484"/>
              <exon start="38876" stop="39011"/>
              <exon start="39099" stop="39262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E591535" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGGTCGCAGAATTGTAGCAG : TTGGAGATTTGCATGGAGATCTTGATAAGGCAAGATGTGCACTTGAGACGGCTGGTGTGCTGAGTTCTGATGGTCAAAGTTTGTGGATTGGTGGTGAGACG : GTTTTGGTTCAGCTCGGAGATATACTTGATAGAGGTGAAGACGAACTTGCAATTTTATCTTTGTTGAAGTCATTAGATATCCAGGCAAAAGCCCATGGTGGGGCAGTTTTCCAG : GTCAATGGAAATCATGAAACTATGAATGTCGAAGGAGACTACAGATATGTTGATAACGGGGCACTTGACGAGTGTATAGACTTTTTGGAATACTTGGATAAATGTGAACGCAACTGGGAAGAGGCTTTTGTCAGTTGGTGTGCTGTGTCTGCCAGATGGAAACAGGACCGGAAGGTGTCTCAAAATTATTGGGCTCAGTGGAATTTGGTGAAG : CGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCTGGGGGTCCATTGGCATGTGAGTTGGCACGACACGGTGTAGTTCTTAAGGTTGAGGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATG : TTGCCTATGGCTTAGAAAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCCCTTTTATAGCCACCAGGGGCTATGACAGTGTTGTGTGGAACCGTTTGTACTCCAGAGATGGCGTGGAGCTGGAAAACTAC</gDNA_template>
            <first_frame> P  G  R  R  I  V  A   : V  G  D  L  H  G  D  L  D  K  A  R  C  A  L  E  T  A  G  V  L  S  S  D  G  Q  S  L  W  I  G  G  E  T  :  V  L  V  Q  L  G  D  I  L  D  R  G  E  D  E  L  A  I  L  S  L  L  K  S  L  D  I  Q  A  K  A  H  G  G  A  V  F  Q  :  V  N  G  N  H  E  T  M  N  V  E  G  D  Y  R  Y  V  D  N  G  A  L  D  E  C  I  D  F  L  E  Y  L  D  K  C  E  R  N  W  E  E  A  F  V  S  W  C  A  V  S  A  R  W  K  Q  D  R  K  V  S  Q  N  Y  W  A  Q  W  N  L  V  K  :  R  Q  K  G  V  I  A  R  S  I  L  M  R  P  G  G  P  L  A  C  E  L  A  R  H  G  V  V  L  K  V  E  D  W  L  F  C  H  G  G  L  L  P  H  H   : V  A  Y  G  L  E  R  L  N  R  E  V  S  R  W  M  K  G  P  S  E  E  D  D  S  P  Q  I  P  F  I  A  T  R  G  Y  D  S  V  V  W  N  R  L  Y  S  R  D  G  V  E  L  E  N  Y </first_frame>
            <second_frame>  R  V  A  E  L  *  Q  :  L  E  I  C  M  E  I  L  I  R  Q  D  V  H  L  R  R  L  V  C  *  V  L  M  V  K  V  C  G  L  V  V  R  R :   F  W  F  S  S  E  I  Y  L  I  E  V  K  T  N  L  Q  F  Y  L  C  *  S  H  *  I  S  R  Q  K  P  M  V  G  Q  F  S  R :   S  M  E  I  M  K  L  *  M  S  K  E  T  T  D  M  L  I  T  G  H  L  T  S  V  *  T  F  W  N  T  W  I  N  V  N  A  T  G  K  R  L  L  S  V  G  V  L  C  L  P  D  G  N  R  T  G  R  C  L  K  I  I  G  L  S  G  I  W  *  S :   G  K  R  V  *  L  Q  D  Q  S  *  *  D  L  G  V  H  W  H  V  S  W  H  D  T  V  *  F  L  R  L  R  I  G  F  S  V  M  V  A  F  F  L  I  M  :  L  P  M  A  *  K  G  *  I  E  K  F  L  D  G  *  K  V  R  V  K  K  T  I  L  H  R  S  L  L  *  P  P  G  A  M  T  V  L  C  G  T  V  C  T  P  E  M  A  W  S  W  K  T   </second_frame>
            <third_frame>   G  S  Q  N  C  S  S :   W  R  F  A  W  R  S  *  *  G  K  M  C  T  *  D  G  W  C  A  E  F  *  W  S  K  F  V  D  W  W  *  D   : G  F  G  S  A  R  R  Y  T  *  *  R  *  R  R  T  C  N  F  I  F  V  E  V  I  R  Y  P  G  K  S  P  W  W  G  S  F  P   : G  Q  W  K  S  *  N  Y  E  C  R  R  R  L  Q  I  C  *  *  R  G  T  *  R  V  Y  R  L  F  G  I  L  G  *  M  *  T  Q  L  G  R  G  F  C  Q  L  V  C  C  V  C  Q  M  E  T  G  P  E  G  V  S  K  L  L  G  S  V  E  F  G  E   : A  A  K  G  C  N  C  K  I  N  P  D  E  T  W  G  S  I  G  M  *  V  G  T  T  R  C  S  S  *  G  *  G  L  A  F  L  S  W  W  P  S  S  S  S  C :   C  L  W  L  R  K  A  E  *  R  S  F  S  M  D  E  R  S  E  *  R  R  R  F  S  T  D  P  F  Y  S  H  Q  G  L  *  Q  C  C  V  E  P  F  V  L  Q  R  W  R  G  A  G  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36930" stop="36951"/>
                    <exon start="37746" stop="37846"/>
                    <exon start="37968" stop="38081"/>
                    <exon start="38272" stop="38484"/>
                    <exon start="38876" stop="39011"/>
                    <exon start="39099" stop="39262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>750</number_coding_nucleotides>
                  <number_encoded_amino_acids>250</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PGRRIVAVGDLHGDLDKARCALETAGVLSSDGQSLWIGGETVLVQLGDILDRGEDELAILSLLKSLDIQAKAHGGAVFQVNGNHETMNVEGDYRYVDNGALDECIDFLEYLDKCERNWEEAFVSWCAVSARWKQDRKVSQNYWAQWNLVKRQKGVIARSILMRPGGPLACELARHGVVLKVEDWLFCHGGLLPHHVAYGLERLNREVSRWMKGPSEEDDSPQIPFIATRGYDSVVWNRLYSRDGVELENY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38871" e_stop="39011"/>
            <exon e_start="39099" e_stop="39274"/>
            <exon e_start="39526" e_stop="39614"/>
            <exon e_start="39745" e_stop="39814"/>
            <exon e_start="39991" e_stop="40096"/>
            <exon e_start="40650" e_stop="40907"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.953" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.874" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="38871" e_stop="39011" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.953" acc_prob="0.997">
            <gDNA_intron_boundary i_start="39012" i_stop="39098" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39099" e_stop="39274" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.874" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39275" i_stop="39525" i_length="251"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39526" e_stop="39614" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="39615" i_stop="39744" i_length="130"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39745" e_stop="39814" e_length="70"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.991">
            <gDNA_intron_boundary i_start="39815" i_stop="39990" i_length="176"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39991" e_stop="40096" e_length="106"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.920">
            <gDNA_intron_boundary i_start="40097" i_stop="40649" i_length="553"/>
          </intron>
          <exon e_serial="6" e_score="0.992">
            <gDNA_exon_boundary e_start="40650" e_stop="40907" e_length="258"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38871" stop="39011"/>
              <exon start="39099" stop="39274"/>
              <exon start="39526" stop="39614"/>
              <exon start="39745" stop="39814"/>
              <exon start="39991" stop="40096"/>
              <exon start="40650" stop="40907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733068" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACAGCGGCAAAAGGGTGTAATTGCAAGATCAATCCTGATGAGACCTGGGGGTCCATTGGCATGTGAGTTGGCACGACACGGTGTAGTTCTTAAGGTTGAGGATTGGCTTTTCTGTCATGGTGGCCTTCTTCCTCATCATG : TTGCCTATGGCTTAGAAAGGCTGAATAGAGAAGTTTCTCGATGGATGAAAGGTCCGAGTGAAGAAGACGATTCTCCACAGATCCCTTTTATAGCCACCAGGGGCTATGACAGTGTTGTGTGGAACCGTTTGTACTCCAGAGATGGCGTGGAGCTGGAAAACTACCAGCTTGAGCAG : GTACAATATCTTCTTGAAGAGACACTACAAAGTGTGGGCGCCAAAGCTATGGTTGTAGGACATACTCCTCAACCGATGGGAGTAAATTG : TAAATACAACTGTAGCATATGGCGAATTGACGTAGGAATGTCCAGAGGAGTACTTGACTCAAGCCCTGAG : GTACTAGAAATAAGAGATAATAAAGCTAGGGCCATAAGGAGCACCAGGGATTGGTCCAGTGAACTTCAGGTCGCTGATTACACGTAGATATCATAGAAACCCCAAG : GCTCTATCTTTCTATTTTCACCATAGCCATGGTTCCGTTCCTGTTTTTGTCGAGTGAAAATAAAACAACACGGGGCTTTCGGGTCTGTACCGTGAATGAGAGTGATTTCAACCATTGCAGATAACAGGGAACTGTAAATTGAAAGCTGGCTCCTTGTATTCTGTTTGTATAAATTCTGTATAGCGATCCGCTGTAACTTAAATACTAGTCAGAAAATACATTGTGTTCGTCAGTATATAGCAAATCCAAGGTACTGGT</gDNA_template>
            <first_frame> D  S  G  K  R  V  *  L  Q  D  Q  S  *  *  D  L  G  V  H  W  H  V  S  W  H  D  T  V  *  F  L  R  L  R  I  G  F  S  V  M  V  A  F  F  L  I  M  :  L  P  M  A  *  K  G  *  I  E  K  F  L  D  G  *  K  V  R  V  K  K  T  I  L  H  R  S  L  L  *  P  P  G  A  M  T  V  L  C  G  T  V  C  T  P  E  M  A  W  S  W  K  T  T  S  L  S  R :   Y  N  I  F  L  K  R  H  Y  K  V  W  A  P  K  L  W  L  *  D  I  L  L  N  R  W  E  *  I   : V  N  T  T  V  A  Y  G  E  L  T  *  E  C  P  E  E  Y  L  T  Q  A  L  R :   Y  *  K  *  E  I  I  K  L  G  P  *  G  A  P  G  I  G  P  V  N  F  R  S  L  I  T  R  R  Y  H  R  N  P  K  :  A  L  S  F  Y  F  H  H  S  H  G  S  V  P  V  F  V  E  *  K  *  N  N  T  G  L  S  G  L  Y  R  E  *  E  *  F  Q  P  L  Q  I  T  G  N  C  K  L  K  A  G  S  L  Y  S  V  C  I  N  S  V  *  R  S  A  V  T  *  I  L  V  R  K  Y  I  V  F  V  S  I  *  Q  I  Q  G  T  G </first_frame>
            <second_frame>  T  A  A  K  G  C  N  C  K  I  N  P  D  E  T  W  G  S  I  G  M  *  V  G  T  T  R  C  S  S  *  G  *  G  L  A  F  L  S  W  W  P  S  S  S  S  C :   C  L  W  L  R  K  A  E  *  R  S  F  S  M  D  E  R  S  E  *  R  R  R  F  S  T  D  P  F  Y  S  H  Q  G  L  *  Q  C  C  V  E  P  F  V  L  Q  R  W  R  G  A  G  K  L  P  A  *  A   : G  T  I  S  S  *  R  D  T  T  K  C  G  R  Q  S  Y  G  C  R  T  Y  S  S  T  D  G  S  K  L  :  *  I  Q  L  *  H  M  A  N  *  R  R  N  V  Q  R  S  T  *  L  K  P  *   : G  T  R  N  K  R  *  *  S  *  G  H  K  E  H  Q  G  L  V  Q  *  T  S  G  R  *  L  H  V  D  I  I  E  T  P  R :   L  Y  L  S  I  F  T  I  A  M  V  P  F  L  F  L  S  S  E  N  K  T  T  R  G  F  R  V  C  T  V  N  E  S  D  F  N  H  C  R  *  Q  G  T  V  N  *  K  L  A  P  C  I  L  F  V  *  I  L  Y  S  D  P  L  *  L  K  Y  *  S  E  N  T  L  C  S  S  V  Y  S  K  S  K  V  L   </second_frame>
            <third_frame>   Q  R  Q  K  G  V  I  A  R  S  I  L  M  R  P  G  G  P  L  A  C  E  L  A  R  H  G  V  V  L  K  V  E  D  W  L  F  C  H  G  G  L  L  P  H  H   : V  A  Y  G  L  E  R  L  N  R  E  V  S  R  W  M  K  G  P  S  E  E  D  D  S  P  Q  I  P  F  I  A  T  R  G  Y  D  S  V  V  W  N  R  L  Y  S  R  D  G  V  E  L  E  N  Y  Q  L  E  Q  :  V  Q  Y  L  L  E  E  T  L  Q  S  V  G  A  K  A  M  V  V  G  H  T  P  Q  P  M  G  V  N  C :   K  Y  N  C  S  I  W  R  I  D  V  G  M  S  R  G  V  L  D  S  S  P  E  :  V  L  E  I  R  D  N  K  A  R  A  I  R  S  T  R  D  W  S  S  E  L  Q  V  A  D  Y  T  *  I  S  *  K  P  Q   : G  S  I  F  L  F  S  P  *  P  W  F  R  S  C  F  C  R  V  K  I  K  Q  H  G  A  F  G  S  V  P  *  M  R  V  I  S  T  I  A  D  N  R  E  L  *  I  E  S  W  L  L  V  F  C  L  Y  K  F  C  I  A  I  R  C  N  L  N  T  S  Q  K  I  H  C  V  R  Q  Y  I  A  N  P  R  Y  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38873" stop="39011"/>
                    <exon start="39099" stop="39274"/>
                    <exon start="39526" stop="39614"/>
                    <exon start="39745" stop="39814"/>
                    <exon start="39991" stop="40077"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>558</number_coding_nucleotides>
                  <number_encoded_amino_acids>186</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRQKGVIARSILMRPGGPLACELARHGVVLKVEDWLFCHGGLLPHHVAYGLERLNREVSRWMKGPSEEDDSPQIPFIATRGYDSVVWNRLYSRDGVELENYQLEQVQYLLEETLQSVGAKAMVVGHTPQPMGVNCKYNCSIWRIDVGMSRGVLDSSPEVLEIRDNKARAIRSTRDWSSELQVADYT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="42079" PGL_stop="41386"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42079" e_stop="42026"/>
            <exon e_start="41950" e_stop="41386"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.726" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="42079" e_stop="42026" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.726" acc_prob="0.992">
            <gDNA_intron_boundary i_start="42025" i_stop="41951" i_length="75"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41950" e_stop="41386" e_length="565"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42079" stop="42026"/>
              <exon start="41950" stop="41386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42079" stop="42026"/>
              <exon start="41950" stop="41386"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42078" stop="42026"/>
              <exon start="41950" stop="41836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTTGTATTTTGCTCTTAGATTGCTGAGTTCTGCGTAGCATTCCACAAAGG : GGTATCTGTGGCTGTGATAGATTTAAATCTGGGTCAATTGGGGATGTCTTTCAGATAATTGTGAAGAAGGACGGATATAGAGGTCTTATGAGGGGATGGATGCCAAGGATGCTCTTCCATGCTCCTGCTGCTGCAATTTGCTGGTCTACATATGAAGCTTCCAAGGCCTTCTTCCAGGAGCACAACACTGTTAACAACACTGCAACGGCCTGAATATATAGTACGAAAGGGAATATTATCACTTATCTCCACGCCAAAAAAAAAAAAAGACAAGAGAAAGAGAGAATTCTCTCTATTGTTGTATGCATATGATAATTTATGGTTGAGACAGAAATTCCACCTGATGTGGGTTTGAGGACGGAGAAACAAGAAGAGAGATTGTGTACTTATTTTGCGTCTACCATCACAAAGTTATATTTTCATTTTTATTTAGGGTTTGTATAAAATTATAATAAGTTGGTGAGATTGAGTCCTCCGTTTTTGATGATTTTTTTCTTCTTCATATCATGAAGAAATAGGATGAATTGGTTTAGAAAATTTTGGGTATTTAATTCATCACATGAGA</gDNA_template>
            <first_frame> L  F  C  I  L  L  L  D  C  *  V  L  R  S  I  P  Q  R  :  G  I  C  G  C  D  R  F  K  S  G  S  I  G  D  V  F  Q  I  I  V  K  K  D  G  Y  R  G  L  M  R  G  W  M  P  R  M  L  F  H  A  P  A  A  A  I  C  W  S  T  Y  E  A  S  K  A  F  F  Q  E  H  N  T  V  N  N  T  A  T  A  *  I  Y  S  T  K  G  N  I  I  T  Y  L  H  A  K  K  K  K  R  Q  E  K  E  R  I  L  S  I  V  V  C  I  *  *  F  M  V  E  T  E  I  P  P  D  V  G  L  R  T  E  K  Q  E  E  R  L  C  T  Y  F  A  S  T  I  T  K  L  Y  F  H  F  Y  L  G  F  V  *  N  Y  N  K  L  V  R  L  S  P  P  F  L  M  I  F  F  F  F  I  S  *  R  N  R  M  N  W  F  R  K  F  W  V  F  N  S  S  H  E  </first_frame>
            <second_frame>  C  F  V  F  C  S  *  I  A  E  F  C  V  A  F  H  K  G :   V  S  V  A  V  I  D  L  N  L  G  Q  L  G  M  S  F  R  *  L  *  R  R  T  D  I  E  V  L  *  G  D  G  C  Q  G  C  S  S  M  L  L  L  L  Q  F  A  G  L  H  M  K  L  P  R  P  S  S  R  S  T  T  L  L  T  T  L  Q  R  P  E  Y  I  V  R  K  G  I  L  S  L  I  S  T  P  K  K  K  K  D  K  R  K  R  E  F  S  L  L  L  Y  A  Y  D  N  L  W  L  R  Q  K  F  H  L  M  W  V  *  G  R  R  N  K  K  R  D  C  V  L  I  L  R  L  P  S  Q  S  Y  I  F  I  F  I  *  G  L  Y  K  I  I  I  S  W  *  D  *  V  L  R  F  *  *  F  F  S  S  S  Y  H  E  E  I  G  *  I  G  L  E  N  F  G  Y  L  I  H  H  M  R </second_frame>
            <third_frame>   V  L  Y  F  A  L  R  L  L  S  S  A  *  H  S  T  K   : G  Y  L  W  L  *  *  I  *  I  W  V  N  W  G  C  L  S  D  N  C  E  E  G  R  I  *  R  S  Y  E  G  M  D  A  K  D  A  L  P  C  S  C  C  C  N  L  L  V  Y  I  *  S  F  Q  G  L  L  P  G  A  Q  H  C  *  Q  H  C  N  G  L  N  I  *  Y  E  R  E  Y  Y  H  L  S  P  R  Q  K  K  K  K  T  R  E  R  E  N  S  L  Y  C  C  M  H  M  I  I  Y  G  *  D  R  N  S  T  *  C  G  F  E  D  G  E  T  R  R  E  I  V  Y  L  F  C  V  Y  H  H  K  V  I  F  S  F  L  F  R  V  C  I  K  L  *  *  V  G  E  I  E  S  S  V  F  D  D  F  F  L  L  H  I  M  K  K  *  D  E  L  V  *  K  I  L  G  I  *  F  I  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41859" stop="41596"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GDGCQGCSSMLLLLQFAGLHMKLPRPSSRSTTLLTTLQRPEYIVRKGILSLISTPKKKKDKRKREFSLLLYAYDNLWLRQKFHLMWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42049" stop="42026"/>
                    <exon start="41950" stop="41738"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLRSIPQRGICGCDRFKSGSIGDVFQIIVKKDGYRGLMRGWMPRMLFHAPAAAICWSTYEASKAFFQEHNTVNNTATA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="44663" PGL_stop="43706"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44663" e_stop="43706"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="44663" e_stop="43706" e_length="958"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44663" stop="44064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269035" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44610" stop="43896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E595348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44442" stop="43706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E621758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTCGACAGTTTTTAGCAAAATTCCCAATTTTTTGGAACCCTAAACCTAACCGCAACTCTTCTTCCTCCTCAAACCCTCCACAAAATTCCTCAAAAAAAAGCTTAAAGCTTTCTCTTTTCTTGATTTTACGGTTCTCTGAGTTATTGAGCCGCTAATTCTGGTACAGAAAAGGAACTAAATTGACCACAACCCGTACTCAAACCCGACCCGAACCGGAAGGTACTGGAACCCTAGTTTTCCCATCCATGGCCACCGATGCTTCGCCGAAGTTTCAACAACGGGACCTATTACCAGTGCCGCAACCACCCGATTACCATCCGGTGGTTGCCGTTTCGCCGGCACATGACGGACTCCATTTTTGGCAGTTTATGGTCGCCGGGTCAATTGCCGGTACGGTTGAACACATGGCGATGTTCCCTGTAGATACAATCAAGACCCAAATGCAAGCTCTAGGTACTTGTCCCTTAAGATCTGCCAGTATCCGTACGGCGCTTGGGGGAATTCTTAAATCCGAAGGTGTTGCGGGACTTTACCGTGGCATTGGTGCTATGGGACTCGGTGCTGGTCCAGCCCATGCTGTTTATTTCTCTGTTTATGAGAGTTGTAAGAAGAAATTTTCCGGTGGGAATCCGAATAATTCAGTTGCACATGCTATTTCGGGTGTTTGCGCCACAGTTGCAAGTGATGCAGTTTTTACACCGATGGATACGGTGAAGCAGAGGTTGCAGCTGAGTGAAAGCCCGTATAAGGGTGTATTGGATTGTGTAAAAAGAGTTTTGAAGGAAGAGGGGTTTAAGGCTTTTTATGCTTCGTATAAAACTACTGTCTTGATGAATGCCCCATATACAGCTGTGCATTTTGCTACGTATGAGGCAGCGAAACTGGGGCTGTCCGGTGTTTCGCCAGATAGTGCAAGTGATGAAAGTATAATAGTTCATGCTACTGCTGGGGCAGC</gDNA_template>
            <first_frame> K  V  D  S  F  *  Q  N  S  Q  F  F  G  T  L  N  L  T  A  T  L  L  P  P  Q  T  L  H  K  I  P  Q  K  K  A  *  S  F  L  F  S  *  F  Y  G  S  L  S  Y  *  A  A  N  S  G  T  E  K  E  L  N  *  P  Q  P  V  L  K  P  D  P  N  R  K  V  L  E  P  *  F  S  H  P  W  P  P  M  L  R  R  S  F  N  N  G  T  Y  Y  Q  C  R  N  H  P  I  T  I  R  W  L  P  F  R  R  H  M  T  D  S  I  F  G  S  L  W  S  P  G  Q  L  P  V  R  L  N  T  W  R  C  S  L  *  I  Q  S  R  P  K  C  K  L  *  V  L  V  P  *  D  L  P  V  S  V  R  R  L  G  E  F  L  N  P  K  V  L  R  D  F  T  V  A  L  V  L  W  D  S  V  L  V  Q  P  M  L  F  I  S  L  F  M  R  V  V  R  R  N  F  P  V  G  I  R  I  I  Q  L  H  M  L  F  R  V  F  A  P  Q  L  Q  V  M  Q  F  L  H  R  W  I  R  *  S  R  G  C  S  *  V  K  A  R  I  R  V  Y  W  I  V  *  K  E  F  *  R  K  R  G  L  R  L  F  M  L  R  I  K  L  L  S  *  *  M  P  H  I  Q  L  C  I  L  L  R  M  R  Q  R  N  W  G  C  P  V  F  R  Q  I  V  Q  V  M  K  V  *  *  F  M  L  L  L  G  Q  </first_frame>
            <second_frame>  K  S  T  V  F  S  K  I  P  N  F  L  E  P  *  T  *  P  Q  L  F  F  L  L  K  P  S  T  K  F  L  K  K  K  L  K  A  F  S  F  L  D  F  T  V  L  *  V  I  E  P  L  I  L  V  Q  K  R  N  *  I  D  H  N  P  Y  S  N  P  T  R  T  G  R  Y  W  N  P  S  F  P  I  H  G  H  R  C  F  A  E  V  S  T  T  G  P  I  T  S  A  A  T  T  R  L  P  S  G  G  C  R  F  A  G  T  *  R  T  P  F  L  A  V  Y  G  R  R  V  N  C  R  Y  G  *  T  H  G  D  V  P  C  R  Y  N  Q  D  P  N  A  S  S  R  Y  L  S  L  K  I  C  Q  Y  P  Y  G  A  W  G  N  S  *  I  R  R  C  C  G  T  L  P  W  H  W  C  Y  G  T  R  C  W  S  S  P  C  C  L  F  L  C  L  *  E  L  *  E  E  I  F  R  W  E  S  E  *  F  S  C  T  C  Y  F  G  C  L  R  H  S  C  K  *  C  S  F  Y  T  D  G  Y  G  E  A  E  V  A  A  E  *  K  P  V  *  G  C  I  G  L  C  K  K  S  F  E  G  R  G  V  *  G  F  L  C  F  V  *  N  Y  C  L  D  E  C  P  I  Y  S  C  A  F  C  Y  V  *  G  S  E  T  G  A  V  R  C  F  A  R  *  C  K  *  *  K  Y  N  S  S  C  Y  C  W  G  S </second_frame>
            <third_frame>   S  R  Q  F  L  A  K  F  P  I  F  W  N  P  K  P  N  R  N  S  S  S  S  S  N  P  P  Q  N  S  S  K  K  S  L  K  L  S  L  F  L  I  L  R  F  S  E  L  L  S  R  *  F  W  Y  R  K  G  T  K  L  T  T  T  R  T  Q  T  R  P  E  P  E  G  T  G  T  L  V  F  P  S  M  A  T  D  A  S  P  K  F  Q  Q  R  D  L  L  P  V  P  Q  P  P  D  Y  H  P  V  V  A  V  S  P  A  H  D  G  L  H  F  W  Q  F  M  V  A  G  S  I  A  G  T  V  E  H  M  A  M  F  P  V  D  T  I  K  T  Q  M  Q  A  L  G  T  C  P  L  R  S  A  S  I  R  T  A  L  G  G  I  L  K  S  E  G  V  A  G  L  Y  R  G  I  G  A  M  G  L  G  A  G  P  A  H  A  V  Y  F  S  V  Y  E  S  C  K  K  K  F  S  G  G  N  P  N  N  S  V  A  H  A  I  S  G  V  C  A  T  V  A  S  D  A  V  F  T  P  M  D  T  V  K  Q  R  L  Q  L  S  E  S  P  Y  K  G  V  L  D  C  V  K  R  V  L  K  E  E  G  F  K  A  F  Y  A  S  Y  K  T  T  V  L  M  N  A  P  Y  T  A  V  H  F  A  T  Y  E  A  A  K  L  G  L  S  G  V  S  P  D  S  A  S  D  E  S  I  I  V  H  A  T  A  G  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44505" stop="43708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FWYRKGTKLTTTRTQTRPEPEGTGTLVFPSMATDASPKFQQRDLLPVPQPPDYHPVVAVSPAHDGLHFWQFMVAGSIAGTVEHMAMFPVDTIKTQMQALGTCPLRSASIRTALGGILKSEGVAGLYRGIGAMGLGAGPAHAVYFSVYESCKKKFSGGNPNNSVAHAISGVCATVASDAVFTPMDTVKQRLQLSESPYKGVLDCVKRVLKEEGFKAFYASYKTTVLMNAPYTAVHFATYEAAKLGLSGVSPDSASDESIIVHATAGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="64831" PGL_stop="64300"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64831" e_stop="64592"/>
            <exon e_start="64324" e_stop="64300"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.894" acc_prob="0.000" e_score="0.917"/>
          <exon-only e_score="0.680"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="64831" e_stop="64592" e_length="240"/>
          </exon>
          <intron i_serial="1" don_prob="0.894" acc_prob="0.000">
            <gDNA_intron_boundary i_start="64591" i_stop="64325" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="0.680">
            <gDNA_exon_boundary e_start="64324" e_stop="64300" e_length="25"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64831" stop="64592"/>
              <exon start="64324" stop="64302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64830" stop="64592"/>
              <exon start="64324" stop="64300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64830" stop="64592"/>
              <exon start="64324" stop="64300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64830" stop="64592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAAGAGAGAAAAGAAGAGTCAGACATCACAGAGGAAGATATTCTGTGAGAAAAATTAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAAAGTGTAGTGATCTTTGGAGTATTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCTTTGCTCCACTCGGGTCGTGGTTTTTCCCTTATTTAGGAAGGTTTTCAC : GATCAAAGTAGAATAAAAAATAACA</gDNA_template>
            <first_frame> R  I  T  K  E  R  K  E  E  S  D  I  T  E  E  D  I  L  *  E  K  L  E  S  V  S  D  I  V  V  R  *  K  N  Q  K  S  V  I  S  F  E  S  V  V  I  F  G  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  H  S  G  R  G  F  S  L  I  *  E  G  F  H  :  D  Q  S  R  I  K  N  N  </first_frame>
            <second_frame>  E  L  Q  K  R  E  K  K  S  Q  T  S  Q  R  K  I  F  C  E  K  N  *  R  V  *  A  I  L  *  *  G  E  K  I  K  R  V  L  F  L  L  K  V  *  *  S  L  E  Y  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  L  C  S  T  R  V  V  V  F  P  L  F  R  K  V  F  T :   I  K  V  E  *  K  I  T </second_frame>
            <third_frame>   N  Y  K  R  E  K  R  R  V  R  H  H  R  G  R  Y  S  V  R  K  I  R  E  C  E  R  Y  C  S  E  V  K  K  S  K  E  C  Y  F  F  *  K  C  S  D  L  W  S  I  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  F  A  P  L  G  S  W  F  F  P  Y  L  G  R  F  S   : R  S  K  *  N  K  K  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0106A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="71637" PGL_stop="71130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="71637" e_stop="71373"/>
            <exon e_start="71273" e_stop="71130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.973" acc_prob="0.997" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="71637" e_stop="71373" e_length="265"/>
          </exon>
          <intron i_serial="1" don_prob="0.973" acc_prob="0.997">
            <gDNA_intron_boundary i_start="71372" i_stop="71274" i_length="99"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71273" e_stop="71130" e_length="144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="71637" stop="71373"/>
              <exon start="71273" stop="71130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGTGAAAGGAAGCCCTCTTTCATCATATGCGCATTCTCCTCTGTTTACGGGCATGAGCCTACCTGTTGCACTGCACTGTAGTAAACTAGAAAGCATGATTGGTGGTGCTCCAGGATTGCTGTATAACAAAAGCAAAACTACAATGCATATATACTGGCCCTCCGTTAGCAGCTATTTTAAGATACCAACCATGATTGATGTTTCGTTTCAATGGAAAAAACATGGTCCGAGACATATGTTAATAGTCAAAGTTGAAGAGCAAG : GAGCAGGACCATCTGAAGCTGGAGCTGGAGCAGAGCCATCTGGAGCTGGAGCATCAAAACGTTCTAAAGTAGGTGGCGGCGTTTGAAGAGACTACGAATTTCTGCATCACAGATGTAATTTTCATTTTGTCCATCTATTATATG</gDNA_template>
            <first_frame> L  V  K  G  S  P  L  S  S  Y  A  H  S  P  L  F  T  G  M  S  L  P  V  A  L  H  C  S  K  L  E  S  M  I  G  G  A  P  G  L  L  Y  N  K  S  K  T  T  M  H  I  Y  W  P  S  V  S  S  Y  F  K  I  P  T  M  I  D  V  S  F  Q  W  K  K  H  G  P  R  H  M  L  I  V  K  V  E  E  Q   : G  A  G  P  S  E  A  G  A  G  A  E  P  S  G  A  G  A  S  K  R  S  K  V  G  G  G  V  *  R  D  Y  E  F  L  H  H  R  C  N  F  H  F  V  H  L  L  Y  </first_frame>
            <second_frame>  W  *  K  E  A  L  F  H  H  M  R  I  L  L  C  L  R  A  *  A  Y  L  L  H  C  T  V  V  N  *  K  A  *  L  V  V  L  Q  D  C  C  I  T  K  A  K  L  Q  C  I  Y  T  G  P  P  L  A  A  I  L  R  Y  Q  P  *  L  M  F  R  F  N  G  K  N  M  V  R  D  I  C  *  *  S  K  L  K  S  K  :  E  Q  D  H  L  K  L  E  L  E  Q  S  H  L  E  L  E  H  Q  N  V  L  K  *  V  A  A  F  E  E  T  T  N  F  C  I  T  D  V  I  F  I  L  S  I  Y  Y  M </second_frame>
            <third_frame>   G  E  R  K  P  S  F  I  I  C  A  F  S  S  V  Y  G  H  E  P  T  C  C  T  A  L  *  *  T  R  K  H  D  W  W  C  S  R  I  A  V  *  Q  K  Q  N  Y  N  A  Y  I  L  A  L  R  *  Q  L  F  *  D  T  N  H  D  *  C  F  V  S  M  E  K  T  W  S  E  T  Y  V  N  S  Q  S  *  R  A  R :   S  R  T  I  *  S  W  S  W  S  R  A  I  W  S  W  S  I  K  T  F  *  S  R  W  R  R  L  K  R  L  R  I  S  A  S  Q  M  *  F  S  F  C  P  S  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71637" stop="71373"/>
                    <exon start="71273" stop="71188"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVKGSPLSSYAHSPLFTGMSLPVALHCSKLESMIGGAPGLLYNKSKTTMHIYWPSVSSYFKIPTMIDVSFQWKKHGPRHMLIVKVEEQGAGPSEAGAGAEPSGAGASKRSKVGGGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78889" PGL_stop="71811"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78889" e_stop="78858"/>
            <exon e_start="72231" e_stop="72094"/>
            <exon e_start="72002" e_stop="71811"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78889" e_stop="78858" e_length="32"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.964">
            <gDNA_intron_boundary i_start="78857" i_stop="72232" i_length="6626"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72231" e_stop="72094" e_length="138"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="72093" i_stop="72003" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72002" e_stop="71811" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78858"/>
              <exon start="72231" stop="72094"/>
              <exon start="72002" stop="71811"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78889" stop="78858"/>
              <exon start="72231" stop="72094"/>
              <exon start="72002" stop="71940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239966" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTCCCCTTGAGCATTCTCTTTCTCGTCTG : GGATGGATATCAAATCTATTAAAGATTTATTGGAGCAGATGTTGAACCAAGTTCAACATCAACATACTGGGGATTCCAAAGATGTATATGAAATGATAGGGAAGCTAGAGCAGATTAAATCATATCTTTTAACCGAAG : CAATGCATAGCAATGTATTTTCTGGATTTCCTTCCCTTCATTCACCTACACCTCAACAACCTTCTCCTCCAGTAGCTGACCAGCAATCATTAGTATCAAATCAACAAACTACTCCTCTGATAGCTGGCCAGCAAGTAATGACACAGGCAGTAGACACTGTTTCTCCCATGAACTTGGGACAACCAACACCAA</gDNA_template>
            <first_frame> H  F  P  L  S  I  L  F  L  V  W :   D  G  Y  Q  I  Y  *  R  F  I  G  A  D  V  E  P  S  S  T  S  T  Y  W  G  F  Q  R  C  I  *  N  D  R  E  A  R  A  D  *  I  I  S  F  N  R  S :   N  A  *  Q  C  I  F  W  I  S  F  P  S  F  T  Y  T  S  T  T  F  S  S  S  S  *  P  A  I  I  S  I  K  S  T  N  Y  S  S  D  S  W  P  A  S  N  D  T  G  S  R  H  C  F  S  H  E  L  G  T  T  N  T   </first_frame>
            <second_frame>  I  S  P  *  A  F  S  F  S  S   : G  M  D  I  K  S  I  K  D  L  L  E  Q  M  L  N  Q  V  Q  H  Q  H  T  G  D  S  K  D  V  Y  E  M  I  G  K  L  E  Q  I  K  S  Y  L  L  T  E   : A  M  H  S  N  V  F  S  G  F  P  S  L  H  S  P  T  P  Q  Q  P  S  P  P  V  A  D  Q  Q  S  L  V  S  N  Q  Q  T  T  P  L  I  A  G  Q  Q  V  M  T  Q  A  V  D  T  V  S  P  M  N  L  G  Q  P  T  P  </second_frame>
            <third_frame>   F  P  L  E  H  S  L  S  R  L  :  G  W  I  S  N  L  L  K  I  Y  W  S  R  C  *  T  K  F  N  I  N  I  L  G  I  P  K  M  Y  M  K  *  *  G  S  *  S  R  L  N  H  I  F  *  P  K  :  Q  C  I  A  M  Y  F  L  D  F  L  P  F  I  H  L  H  L  N  N  L  L  L  Q  *  L  T  S  N  H  *  Y  Q  I  N  K  L  L  L  *  *  L  A  S  K  *  *  H  R  Q  *  T  L  F  L  P  *  T  W  D  N  Q  H  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78876" stop="78858"/>
                    <exon start="72231" stop="72094"/>
                    <exon start="72002" stop="71812"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>348</number_coding_nucleotides>
                  <number_encoded_amino_acids>116</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFSFSSGMDIKSIKDLLEQMLNQVQHQHTGDSKDVYEMIGKLEQIKSYLLTEAMHSNVFSGFPSLHSPTPQQPSPPVADQQSLVSNQQTTPLIAGQQVMTQAVDTVSPMNLGQPTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="78336" PGL_stop="78946"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78336" e_stop="78946"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="78336" e_stop="78946" e_length="611"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78336" stop="78946"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320991" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTACTCTTCCTTCTTCTTCTTAACTGCTTCTTCTTCTTCTTAGCTATTTCTTAACTGATTTTTCTTCTTCTTCCTAACGTCATGAAGCTTCCTTCATTAACGAACACAAAAACATCAAATTTTTAGCTAACCCAGTACTCTTCATCTTTTAAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACTCTTCATCTTCTAACACAAAAACATCAATTTTTCAGCTAACCCAGAACCTATCATCTTTTTTAACACAAAAACATCAAATTTTTAGCTAACCCAGAACCTACAAGTCATCTTGTAACACGAAAACATCAAATTTTTAGCTAACCCAGAACCTACTAGCTTTTTTAACACAAAAACATCAAATTTTTAGGTAACCCAGAACCTACTCTTCATTTTCTAATACAAAAACATCAAATTTTTAGCTAACCCAGAAACTACTCTTCATCTTTTTAACACAAAAACGTCGATTATTTAGCTAAGAAATGAGAAAAAAAAAGGAATTGAACTTACCAGACGAGAAAGAGAATGCTCAAGGGGAAATGGCTACTTCTCCAACTAAAGCAAGACCTTCCCAAGTTTCTATTATATATATATATATC</gDNA_template>
            <first_frame> K  L  L  F  L  L  L  L  N  C  F  F  F  F  L  A  I  S  *  L  I  F  L  L  L  P  N  V  M  K  L  P  S  L  T  N  T  K  T  S  N  F  *  L  T  Q  Y  S  S  S  F  K  H  K  N  I  K  F  L  A  N  P  E  P  T  L  H  L  L  T  Q  K  H  Q  F  F  S  *  P  R  T  Y  H  L  F  *  H  K  N  I  K  F  L  A  N  P  E  P  T  S  H  L  V  T  R  K  H  Q  I  F  S  *  P  R  T  Y  *  L  F  *  H  K  N  I  K  F  L  G  N  P  E  P  T  L  H  F  L  I  Q  K  H  Q  I  F  S  *  P  R  N  Y  S  S  S  F  *  H  K  N  V  D  Y  L  A  K  K  *  E  K  K  R  N  *  T  Y  Q  T  R  K  R  M  L  K  G  K  W  L  L  L  Q  L  K  Q  D  L  P  K  F  L  L  Y  I  Y  I   </first_frame>
            <second_frame>  N  Y  S  S  F  F  F  L  T  A  S  S  S  S  *  L  F  L  N  *  F  F  F  F  F  L  T  S  *  S  F  L  H  *  R  T  Q  K  H  Q  I  F  S  *  P  S  T  L  H  L  L  N  T  K  T  S  N  F  *  L  T  Q  N  L  L  F  I  F  *  H  K  N  I  N  F  S  A  N  P  E  P  I  I  F  F  N  T  K  T  S  N  F  *  L  T  Q  N  L  Q  V  I  L  *  H  E  N  I  K  F  L  A  N  P  E  P  T  S  F  F  N  T  K  T  S  N  F  *  V  T  Q  N  L  L  F  I  F  *  Y  K  N  I  K  F  L  A  N  P  E  T  T  L  H  L  F  N  T  K  T  S  I  I  *  L  R  N  E  K  K  K  G  I  E  L  T  R  R  E  R  E  C  S  R  G  N  G  Y  F  S  N  *  S  K  T  F  P  S  F  Y  Y  I  Y  I  Y  </second_frame>
            <third_frame>   T  T  L  P  S  S  S  *  L  L  L  L  L  L  S  Y  F  L  T  D  F  S  S  S  S  *  R  H  E  A  S  F  I  N  E  H  K  N  I  K  F  L  A  N  P  V  L  F  I  F  *  T  Q  K  H  Q  I  F  S  *  P  R  T  Y  S  S  S  S  N  T  K  T  S  I  F  Q  L  T  Q  N  L  S  S  F  L  T  Q  K  H  Q  I  F  S  *  P  R  T  Y  K  S  S  C  N  T  K  T  S  N  F  *  L  T  Q  N  L  L  A  F  L  T  Q  K  H  Q  I  F  R  *  P  R  T  Y  S  S  F  S  N  T  K  T  S  N  F  *  L  T  Q  K  L  L  F  I  F  L  T  Q  K  R  R  L  F  S  *  E  M  R  K  K  K  E  L  N  L  P  D  E  K  E  N  A  Q  G  E  M  A  T  S  P  T  K  A  R  P  S  Q  V  S  I  I  Y  I  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0106A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="84171" PGL_stop="79492"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84171" e_stop="84003"/>
            <exon e_start="82813" e_stop="82641"/>
            <exon e_start="81120" e_stop="81036"/>
            <exon e_start="80419" e_stop="80331"/>
            <exon e_start="80001" e_stop="79492"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.421" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84171" e_stop="84003" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82813" e_stop="82641" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.902" acc_prob="0.421">
            <gDNA_intron_boundary i_start="82640" i_stop="81121" i_length="1520"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81120" e_stop="81036" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.998">
            <gDNA_intron_boundary i_start="81035" i_stop="80420" i_length="616"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80419" e_stop="80331" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329"/>
          </intron>
          <exon e_serial="5" e_score="0.980">
            <gDNA_exon_boundary e_start="80001" e_stop="79492" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84171" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84155" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84138" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84136" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703036" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84123" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84122" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84120" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84120" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E566158" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84110" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79492"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84095" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E624732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84094" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84085" stop="84003"/>
              <exon start="82813" stop="82659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84047" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443357" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84046" stop="84003"/>
              <exon start="82813" stop="82641"/>
              <exon start="81120" stop="81036"/>
              <exon start="80419" stop="80331"/>
              <exon start="80001" stop="79968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80408" stop="80331"/>
              <exon start="80001" stop="79556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG : AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATG : CGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAG : TGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT : GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGTTTTTCTTTCGTCACAATGTGAGTTGAATCAAATATTTGTTTTCATACATTAAGTA</gDNA_template>
            <first_frame> L  *  L  Q  T  L  R  I  L  W  R  R  F  R  N  H  S  E  Y  T  D  S  E  K  V  A  L  L  F  S  V  M  M  L  T  G  D  I  P  P  N  Q  T  I  Y  I  K  N  L  N  E  K  V  K  K  E   : E  L  K  R  S  L  Y  C  L  F  S  Q  Y  G  R  I  V  D  I  V  A  L  K  T  P  K  L  R  G  Q  S  W  V  V  F  S  E  V  T  S  A  S  N  A  V  R  Q  M  Q  N  F  P  F  Y  D  K  P  M  :  R  I  Q  Y  A  K  S  K  S  D  C  I  A  K  A  E  G  T  Y  D  K  K  K  K  Q  D  E  K   : V  E  K  R  K  R  T  E  E  T  P  P  Q  T  G  A  A  N  G  S  R  T  D  S  N  G  G  G  P  A  :  A  A  S  R  Q  G  K  P  S  A  Q  D  V  A  E  P  N  N  I  L  F  I  Q  N  L  P  Y  E  T  T  S  M  M  L  E  V  L  F  K  Q  Y  P  G  F  R  E  V  R  M  I  E  A  K  P  G  I  A  F  V  E  F  D  D  D  V  Q  S  S  V  A  M  Q  A  L  Q  G  F  K  I  T  P  Q  N  P  M  A  I  T  Y  A  K  K  *  A  F  L  I  P  V  H  A  G  Y  C  M  F  T  P  *  V  N  V  E  G  T  C  I  I  H  L  S  R  L  L  L  G  L  C  S  Q  *  K  C  F  K  Q  F  D  F  M  Y  *  S  *  E  N  M  C  L  V  V  V  F  L  S  S  Q  C  E  L  N  Q  I  F  V  F  I  H  *  V </first_frame>
            <second_frame>  C  S  S  K  L  F  E  F  C  G  A  D  S  E  I  T  V  N  I  Q  I  V  R  K  L  L  F  S  S  R  *  *  C  L  R  E  T  Y  H  R  I  K  L  F  T  L  R  T  *  T  R  R  S  R  K  K  :  S  *  R  G  L  C  I  A  C  S  R  S  M  G  G  L  S  I  *  *  L  L  R  L  P  N  L  E  D  N  H  G  L  C  L  V  K  *  H  L  P  V  M  L  *  G  K  C  K  T  S  R  F  T  T  N  Q  C :   G  Y  N  M  L  N  Q  S  Q  I  V  L  L  R  Q  R  G  P  M  T  R  K  R  N  K  M  K  K  :  W  R  K  G  N  V  L  K  K  L  L  R  K  L  V  Q  L  M  A  Q  E  L  T  V  T  A  E  V  Q  L :   L  H  L  D  K  E  S  Q  V  L  K  M  L  R  N  Q  I  I  F  S  L  Y  R  I  C  P  T  R  Q  Q  V  *  C  L  K  C  S  S  N  S  I  L  A  L  E  K  F  E  *  L  K  Q  S  Q  V  L  R  L  W  N  L  T  M  M  S  S  L  Q  S  P  C  R  P  F  K  A  S  K  S  H  P  R  I  P  W  Q  L  P  M  P  R  N  E  H  S  *  F  Q  Y  M  L  G  I  V  C  S  P  H  R  S  M  *  K  A  H  V  L  Y  T  *  A  G  F  F  W  V  F  V  A  S  K  N  V  L  N  N  L  I  L  C  T  N  P  K  K  I  C  V  W  L  S  F  F  F  R  H  N  V  S  *  I  K  Y  L  F  S  Y  I  K   </second_frame>
            <third_frame>   V  A  P  N  S  S  N  F  V  A  Q  I  Q  K  S  Q  *  I  Y  R  *  *  E  S  C  S  S  L  L  G  N  D  A  Y  G  R  H  T  T  E  S  N  Y  L  H  *  E  L  K  R  E  G  Q  E  R  R :   A  K  E  V  S  V  L  L  V  L  A  V  W  E  D  C  R  Y  S  S  S  *  D  S  Q  T  *  R  T  I  M  G  C  V  *  *  S  N  I  C  Q  *  C  C  E  A  N  A  K  L  P  V  L  R  Q  T  N   : A  D  T  I  C  *  I  K  V  R  L  Y  C  *  G  R  G  D  L  *  Q  E  K  E  T  R  *  K  S :   G  E  K  E  T  Y  *  R  N  S  S  A  N  W  C  S  *  W  L  K  N  *  Q  *  R  R  R  S  S   : C  C  I  S  T  R  K  A  K  C  S  R  C  C  G  T  K  *  Y  S  L  Y  T  E  S  A  L  R  D  N  K  Y  D  A  *  S  A  L  Q  T  V  S  W  L  *  R  S  S  N  D  *  S  K  A  R  Y  C  V  C  G  I  *  R  *  C  P  V  F  S  R  H  A  G  P  S  R  L  Q  N  H  T  P  E  S  H  G  N  Y  L  C  Q  E  M  S  I  L  N  S  S  T  C  W  V  L  Y  V  H  P  I  G  Q  C  R  R  H  M  Y  Y  T  L  E  Q  A  S  F  G  S  L  *  P  V  K  M  F  *  T  I  *  F  Y  V  L  I  L  R  K  Y  V  F  G  C  R  F  S  F  V  T  M  *  V  E  S  N  I  C  F  H  T  L  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84165" stop="84003"/>
                    <exon start="82813" stop="82641"/>
                    <exon start="81120" stop="81036"/>
                    <exon start="80419" stop="80331"/>
                    <exon start="80001" stop="79723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQTLRILWRRFRNHSEYTDSEKVALLFSVMMLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTSASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTYDKKKKQDEKVEKRKRTEETPPQTGAANGSRTDSNGGGPAAASRQGKPSAQDVAEPNNILFIQNLPYETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="84170" e_stop="84003"/>
            <exon e_start="82813" e_stop="80331"/>
            <exon e_start="80001" e_stop="79500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.994" e_score="0.994"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="84170" e_stop="84003" e_length="168"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.994">
            <gDNA_intron_boundary i_start="84002" i_stop="82814" i_length="1189"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="82813" e_stop="80331" e_length="2483"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="80330" i_stop="80002" i_length="329"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="80001" e_stop="79500" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84170" stop="84003"/>
              <exon start="82813" stop="80331"/>
              <exon start="80001" stop="79500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84085" stop="84003"/>
              <exon start="82813" stop="82659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313600" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80408" stop="80331"/>
              <exon start="80001" stop="79556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251272" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTAGCTCCAAACTCTTCGAATTTTGTGGCGCAGATTCAGAAATCACAGTGAATATACAGATAGTGAGAAAGTTGCTCTTCTCTTCTCGGTAATGATGCTTACGGGAGACATACCACCGAATCAAACTATTTACATTAAGAACTTAAACGAGAAGGTCAAGAAAGAAG : AGCTAAAGAGGTCTCTGTATTGCTTGTTCTCGCAGTATGGGAGGATTGTCGATATAGTAGCTCTTAAGACTCCCAAACTTAGAGGACAATCATGGGTTGTGTTTAGTGAAGTAACATCTGCCAGTAATGCTGTGAGGCAAATGCAAAACTTCCCGTTTTACGACAAACCAATGGTGAGCATAATGACAGTTGGAATTGTGATCTGTTTCTCTTGTTCATTATTTATGTACTAACATGGCTGTTCTAGCTTAATTGTTCAAAACGTTCTGCTTCATTGTCCTTATTTTCTCTATCCATCTCCTGAAGTATGTGATGATCCTTTATCAACTTGTTATGTTTATGTGATATCCTTTGTCCTATCAGAAAAAGCTCTTACTATGTCTACTGTACAATAGTTCTCTACATGTATCTTTTTAGCTTGGCCTGCCCTGATTTCTGGTTTTATAGTCTGTCCATAAATCATGTATTCCTTCAAGATGTGGAAACATATTGCTGACTCCACACTTTGCTTAAAACCATTTTATAATTTTTGATAAATACCTGCACTTCATTAAAAATTATACCAAGTTATATTACTAAAACTAATGCTAATACAGTATTTGTCAAAAAGGTATGCCAAACTTTTTTTTACAGAATGTGGTAATCCTCACCCTAACCACCCTGCTCAGGAGCCAAATAGTGCCTTTTCCTACTTTGCCTCAATGGTGACTCGTACTCGCGATTGCATGGTTGGAGGTGGAGGCCCAGGCCCTTCTCACTAGGCTATCCATCCCTTGTCTGCCTTGGTTAAGATTTTTTGTTCGATCTTCTAATTTTTTTTTCCTGATTATGCTTGTGGTGGTATAAAATTGAAATATAGCTGCCTGCCTGAACATTGATAGACTATGACCTTAAGTCAAGCCATGAATTATTATTCTTATAAGGACCATGGAAACATCACACAAACTAACATGATACCATCTGGGCCCATAGGGTTCAGTATAGTGGTAAAAGTGCTTCATGTTGTATGTAGGTTATGGGCATGTCACATTCGAACTCTTGTTGAGGCAAAAGCCTAGTATTTAAGTGGTGAAGAGGAGACTGGATGTCCCATTATCCCTCAGAGTATCAAAGCATGCACCACTGGAACTCGGGGTTCAGTTATAAATAAAATAACACCATTATAAGACCTTAGATTGGATACATGTATGCATGTGCTTTCTGTGAATTGTCTTTCTGTATCAGTAGGAATGTGCAAGTTCGATCTTCTCTGGAGTCGGGACATCTACAAGCTCTACATAGCTAGCCAATGAAGTTATGGTCTAAAGCCTACAACAATCAGCTTAACCTTTACAAGCAAAAGAAACTGTGTAATAGGATAAAAAGAGTATCAGATTAATTCGATATGACCTGAAGTTTATCAACAATTAAATGGGAAGGGTTAGATGGAGGTTGCTGAAATAATCATACAGAGTAAAGCTCTGTATCTGTTACTCATTTTTGTCTAAATCCTTATCACCATATGCTTTTTAGGAAGAAACTCCTCAGCTTTGTAACAGTGGGACTTTTTTAGTTTAATTTTCTCTGGGGCTAAATGTTTGTATTAATTGCTTAAATTGGCTTGCTGTCCCAAAAAAATTTGGGTCGCTGTTGTTCATTTTACATGGTGTAGAATAGTAGAAAGGTCAGTGACTAAGCTTTTGATATAATGCAGCGGATACAATATGCTAAATCAAAGTCAGATTGTATTGCTAAGGCAGAGGGGACCTATGACAAGAAAAAGAAACAAGATGAAAAAGGTGACTTCATTCTGTTGTATATTATTCACCCGCTCCATTTCCTCTTAAGCTTCTCACTGGTTCCAAAGTGCATGTCATGGATAATCATCTATGGAAATGTTAAAAAGTGAATCTTATAGTCCAAGAGGAGCACTCCTTGCTGAAGCTAAGAGCATTCAAACAAACTAAATAAACATTAATTACTATTATAATTTCTGTTTACCTTTAAGATTTTACTTCTGGCGAACTTCTTTTGTTACAGCTCAGCTAAACGGAATATTTTATAGTTCAACTGAAGTGTCTTAACAGAATAGTACTAGATGTGTAATCCTCGAGTAGCACCTGTCATATTGATTGTGATCTTGTCTACTACATCCACTTACAATTTTCTCATCACTGTGGGTGCCTCATGTATCTGGACTAGTGATGGAAAATTTTGTTAGGAGTATTGTAATCATCCGCATGCATGCATGCATTTCATTTTGTCACAATCCTCGCAGTTTCCAAAGCTTGATAGTGTTGCAGTTTTGATGAACCACGTGTGTATTTGCATTGCATGTATAACTTTTAAAATCAATTTGTCAGTTATTTTGTCGACTTCTAGTGATTTGGACTAACTTGACTTACTAATATGTAGTGGAGAAAAGGAAACGTACTGAAGAAACTCCTCCGCAAACTGGTGCAGCTAATGGCTCAAGAACTGACAGTAACGGCGGAGGTCCAGCT : GCTGCATCTCGACAAGGAAAGCCAAGTGCTCAAGATGTTGCGGAACCAAATAATATTCTCTTTATACAGAATCTGCCCTACGAGACAACAAGTATGATGCTTGAAGTGCTCTTCAAACAGTATCCTGGCTTTAGAGAAGTTCGAATGATTGAAGCAAAGCCAGGTATTGCGTTTGTGGAATTTGACGATGATGTCCAGTCTTCAGTCGCCATGCAGGCCCTTCAAGGCTTCAAAATCACACCCCAGAATCCCATGGCAATTACCTATGCCAAGAAATGAGCATTCTTAATTCCAGTACATGCTGGGTATTGTATGTTCACCCCATAGGTCAATGTAGAAGGCACATGTATTATACACTTGAGCAGGCTTCTTTTGGGTCTTTGTAGCCAGTAAAAATGTTTTAAACAATTTGATTTTATGTACTAATCCTAAGAAAATATGTGTTTGGTTGTCGTTTTTCTTTCGTCACAATGTGAGTTGAATCAAATATTTGTTTTCATAC</gDNA_template>
            <first_frame> C  S  S  K  L  F  E  F  C  G  A  D  S  E  I  T  V  N  I  Q  I  V  R  K  L  L  F  S  S  R  *  *  C  L  R  E  T  Y  H  R  I  K  L  F  T  L  R  T  *  T  R  R  S  R  K  K  :  S  *  R  G  L  C  I  A  C  S  R  S  M  G  G  L  S  I  *  *  L  L  R  L  P  N  L  E  D  N  H  G  L  C  L  V  K  *  H  L  P  V  M  L  *  G  K  C  K  T  S  R  F  T  T  N  Q  W  *  A  *  *  Q  L  E  L  *  S  V  S  L  V  H  Y  L  C  T  N  M  A  V  L  A  *  L  F  K  T  F  C  F  I  V  L  I  F  S  I  H  L  L  K  Y  V  M  I  L  Y  Q  L  V  M  F  M  *  Y  P  L  S  Y  Q  K  K  L  L  L  C  L  L  Y  N  S  S  L  H  V  S  F  *  L  G  L  P  *  F  L  V  L  *  S  V  H  K  S  C  I  P  S  R  C  G  N  I  L  L  T  P  H  F  A  *  N  H  F  I  I  F  D  K  Y  L  H  F  I  K  N  Y  T  K  L  Y  Y  *  N  *  C  *  Y  S  I  C  Q  K  G  M  P  N  F  F  L  Q  N  V  V  I  L  T  L  T  T  L  L  R  S  Q  I  V  P  F  P  T  L  P  Q  W  *  L  V  L  A  I  A  W  L  E  V  E  A  Q  A  L  L  T  R  L  S  I  P  C  L  P  W  L  R  F  F  V  R  S  S  N  F  F  F  L  I  M  L  V  V  V  *  N  *  N  I  A  A  C  L  N  I  D  R  L  *  P  *  V  K  P  *  I  I  I  L  I  R  T  M  E  T  S  H  K  L  T  *  Y  H  L  G  P  *  G  S  V  *  W  *  K  C  F  M  L  Y  V  G  Y  G  H  V  T  F  E  L  L  L  R  Q  K  P  S  I  *  V  V  K  R  R  L  D  V  P  L  S  L  R  V  S  K  H  A  P  L  E  L  G  V  Q  L  *  I  K  *  H  H  Y  K  T  L  D  W  I  H  V  C  M  C  F  L  *  I  V  F  L  Y  Q  *  E  C  A  S  S  I  F  S  G  V  G  T  S  T  S  S  T  *  L  A  N  E  V  M  V  *  S  L  Q  Q  S  A  *  P  L  Q  A  K  E  T  V  *  *  D  K  K  S  I  R  L  I  R  Y  D  L  K  F  I  N  N  *  M  G  R  V  R  W  R  L  L  K  *  S  Y  R  V  K  L  C  I  C  Y  S  F  L  S  K  S  L  S  P  Y  A  F  *  E  E  T  P  Q  L  C  N  S  G  T  F  L  V  *  F  S  L  G  L  N  V  C  I  N  C  L  N  W  L  A  V  P  K  K  F  G  S  L  L  F  I  L  H  G  V  E  *  *  K  G  Q  *  L  S  F  *  Y  N  A  A  D  T  I  C  *  I  K  V  R  L  Y  C  *  G  R  G  D  L  *  Q  E  K  E  T  R  *  K  R  *  L  H  S  V  V  Y  Y  S  P  A  P  F  P  L  K  L  L  T  G  S  K  V  H  V  M  D  N  H  L  W  K  C  *  K  V  N  L  I  V  Q  E  E  H  S  L  L  K  L  R  A  F  K  Q  T  K  *  T  L  I  T  I  I  I  S  V  Y  L  *  D  F  T  S  G  E  L  L  L  L  Q  L  S  *  T  E  Y  F  I  V  Q  L  K  C  L  N  R  I  V  L  D  V  *  S  S  S  S  T  C  H  I  D  C  D  L  V  Y  Y  I  H  L  Q  F  S  H  H  C  G  C  L  M  Y  L  D  *  *  W  K  I  L  L  G  V  L  *  S  S  A  C  M  H  A  F  H  F  V  T  I  L  A  V  S  K  A  *  *  C  C  S  F  D  E  P  R  V  Y  L  H  C  M  Y  N  F  *  N  Q  F  V  S  Y  F  V  D  F  *  *  F  G  L  T  *  L  T  N  M  *  W  R  K  G  N  V  L  K  K  L  L  R  K  L  V  Q  L  M  A  Q  E  L  T  V  T  A  E  V  Q  L :   L  H  L  D  K  E  S  Q  V  L  K  M  L  R  N  Q  I  I  F  S  L  Y  R  I  C  P  T  R  Q  Q  V  *  C  L  K  C  S  S  N  S  I  L  A  L  E  K  F  E  *  L  K  Q  S  Q  V  L  R  L  W  N  L  T  M  M  S  S  L  Q  S  P  C  R  P  F  K  A  S  K  S  H  P  R  I  P  W  Q  L  P  M  P  R  N  E  H  S  *  F  Q  Y  M  L  G  I  V  C  S  P  H  R  S  M  *  K  A  H  V  L  Y  T  *  A  G  F  F  W  V  F  V  A  S  K  N  V  L  N  N  L  I  L  C  T  N  P  K  K  I  C  V  W  L  S  F  F  F  R  H  N  V  S  *  I  K  Y  L  F  S  Y </first_frame>
            <second_frame>  V  A  P  N  S  S  N  F  V  A  Q  I  Q  K  S  Q  *  I  Y  R  *  *  E  S  C  S  S  L  L  G  N  D  A  Y  G  R  H  T  T  E  S  N  Y  L  H  *  E  L  K  R  E  G  Q  E  R  R :   A  K  E  V  S  V  L  L  V  L  A  V  W  E  D  C  R  Y  S  S  S  *  D  S  Q  T  *  R  T  I  M  G  C  V  *  *  S  N  I  C  Q  *  C  C  E  A  N  A  K  L  P  V  L  R  Q  T  N  G  E  H  N  D  S  W  N  C  D  L  F  L  L  F  I  I  Y  V  L  T  W  L  F  *  L  N  C  S  K  R  S  A  S  L  S  L  F  S  L  S  I  S  *  S  M  *  *  S  F  I  N  L  L  C  L  C  D  I  L  C  P  I  R  K  S  S  Y  Y  V  Y  C  T  I  V  L  Y  M  Y  L  F  S  L  A  C  P  D  F  W  F  Y  S  L  S  I  N  H  V  F  L  Q  D  V  E  T  Y  C  *  L  H  T  L  L  K  T  I  L  *  F  L  I  N  T  C  T  S  L  K  I  I  P  S  Y  I  T  K  T  N  A  N  T  V  F  V  K  K  V  C  Q  T  F  F  Y  R  M  W  *  S  S  P  *  P  P  C  S  G  A  K  *  C  L  F  L  L  C  L  N  G  D  S  Y  S  R  L  H  G  W  R  W  R  P  R  P  F  S  L  G  Y  P  S  L  V  C  L  G  *  D  F  L  F  D  L  L  I  F  F  S  *  L  C  L  W  W  Y  K  I  E  I  *  L  P  A  *  T  L  I  D  Y  D  L  K  S  S  H  E  L  L  F  L  *  G  P  W  K  H  H  T  N  *  H  D  T  I  W  A  H  R  V  Q  Y  S  G  K  S  A  S  C  C  M  *  V  M  G  M  S  H  S  N  S  C  *  G  K  S  L  V  F  K  W  *  R  G  D  W  M  S  H  Y  P  S  E  Y  Q  S  M  H  H  W  N  S  G  F  S  Y  K  *  N  N  T  I  I  R  P  *  I  G  Y  M  Y  A  C  A  F  C  E  L  S  F  C  I  S  R  N  V  Q  V  R  S  S  L  E  S  G  H  L  Q  A  L  H  S  *  P  M  K  L  W  S  K  A  Y  N  N  Q  L  N  L  Y  K  Q  K  K  L  C  N  R  I  K  R  V  S  D  *  F  D  M  T  *  S  L  S  T  I  K  W  E  G  L  D  G  G  C  *  N  N  H  T  E  *  S  S  V  S  V  T  H  F  C  L  N  P  Y  H  H  M  L  F  R  K  K  L  L  S  F  V  T  V  G  L  F  *  F  N  F  L  W  G  *  M  F  V  L  I  A  *  I  G  L  L  S  Q  K  N  L  G  R  C  C  S  F  Y  M  V  *  N  S  R  K  V  S  D  *  A  F  D  I  M  Q  R  I  Q  Y  A  K  S  K  S  D  C  I  A  K  A  E  G  T  Y  D  K  K  K  K  Q  D  E  K  G  D  F  I  L  L  Y  I  I  H  P  L  H  F  L  L  S  F  S  L  V  P  K  C  M  S  W  I  I  I  Y  G  N  V  K  K  *  I  L  *  S  K  R  S  T  P  C  *  S  *  E  H  S  N  K  L  N  K  H  *  L  L  L  *  F  L  F  T  F  K  I  L  L  L  A  N  F  F  C  Y  S  S  A  K  R  N  I  L  *  F  N  *  S  V  L  T  E  *  Y  *  M  C  N  P  R  V  A  P  V  I  L  I  V  I  L  S  T  T  S  T  Y  N  F  L  I  T  V  G  A  S  C  I  W  T  S  D  G  K  F  C  *  E  Y  C  N  H  P  H  A  C  M  H  F  I  L  S  Q  S  S  Q  F  P  K  L  D  S  V  A  V  L  M  N  H  V  C  I  C  I  A  C  I  T  F  K  I  N  L  S  V  I  L  S  T  S  S  D  L  D  *  L  D  L  L  I  C  S  G  E  K  E  T  Y  *  R  N  S  S  A  N  W  C  S  *  W  L  K  N  *  Q  *  R  R  R  S  S   : C  C  I  S  T  R  K  A  K  C  S  R  C  C  G  T  K  *  Y  S  L  Y  T  E  S  A  L  R  D  N  K  Y  D  A  *  S  A  L  Q  T  V  S  W  L  *  R  S  S  N  D  *  S  K  A  R  Y  C  V  C  G  I  *  R  *  C  P  V  F  S  R  H  A  G  P  S  R  L  Q  N  H  T  P  E  S  H  G  N  Y  L  C  Q  E  M  S  I  L  N  S  S  T  C  W  V  L  Y  V  H  P  I  G  Q  C  R  R  H  M  Y  Y  T  L  E  Q  A  S  F  G  S  L  *  P  V  K  M  F  *  T  I  *  F  Y  V  L  I  L  R  K  Y  V  F  G  C  R  F  S  F  V  T  M  *  V  E  S  N  I  C  F  H   </second_frame>
            <third_frame>   *  L  Q  T  L  R  I  L  W  R  R  F  R  N  H  S  E  Y  T  D  S  E  K  V  A  L  L  F  S  V  M  M  L  T  G  D  I  P  P  N  Q  T  I  Y  I  K  N  L  N  E  K  V  K  K  E   : E  L  K  R  S  L  Y  C  L  F  S  Q  Y  G  R  I  V  D  I  V  A  L  K  T  P  K  L  R  G  Q  S  W  V  V  F  S  E  V  T  S  A  S  N  A  V  R  Q  M  Q  N  F  P  F  Y  D  K  P  M  V  S  I  M  T  V  G  I  V  I  C  F  S  C  S  L  F  M  Y  *  H  G  C  S  S  L  I  V  Q  N  V  L  L  H  C  P  Y  F  L  Y  P  S  P  E  V  C  D  D  P  L  S  T  C  Y  V  Y  V  I  S  F  V  L  S  E  K  A  L  T  M  S  T  V  Q  *  F  S  T  C  I  F  L  A  W  P  A  L  I  S  G  F  I  V  C  P  *  I  M  Y  S  F  K  M  W  K  H  I  A  D  S  T  L  C  L  K  P  F  Y  N  F  *  *  I  P  A  L  H  *  K  L  Y  Q  V  I  L  L  K  L  M  L  I  Q  Y  L  S  K  R  Y  A  K  L  F  F  T  E  C  G  N  P  H  P  N  H  P  A  Q  E  P  N  S  A  F  S  Y  F  A  S  M  V  T  R  T  R  D  C  M  V  G  G  G  G  P  G  P  S  H  *  A  I  H  P  L  S  A  L  V  K  I  F  C  S  I  F  *  F  F  F  P  D  Y  A  C  G  G  I  K  L  K  Y  S  C  L  P  E  H  *  *  T  M  T  L  S  Q  A  M  N  Y  Y  S  Y  K  D  H  G  N  I  T  Q  T  N  M  I  P  S  G  P  I  G  F  S  I  V  V  K  V  L  H  V  V  C  R  L  W  A  C  H  I  R  T  L  V  E  A  K  A  *  Y  L  S  G  E  E  E  T  G  C  P  I  I  P  Q  S  I  K  A  C  T  T  G  T  R  G  S  V  I  N  K  I  T  P  L  *  D  L  R  L  D  T  C  M  H  V  L  S  V  N  C  L  S  V  S  V  G  M  C  K  F  D  L  L  W  S  R  D  I  Y  K  L  Y  I  A  S  Q  *  S  Y  G  L  K  P  T  T  I  S  L  T  F  T  S  K  R  N  C  V  I  G  *  K  E  Y  Q  I  N  S  I  *  P  E  V  Y  Q  Q  L  N  G  K  G  *  M  E  V  A  E  I  I  I  Q  S  K  A  L  Y  L  L  L  I  F  V  *  I  L  I  T  I  C  F  L  G  R  N  S  S  A  L  *  Q  W  D  F  F  S  L  I  F  S  G  A  K  C  L  Y  *  L  L  K  L  A  C  C  P  K  K  I  W  V  A  V  V  H  F  T  W  C  R  I  V  E  R  S  V  T  K  L  L  I  *  C  S  G  Y  N  M  L  N  Q  S  Q  I  V  L  L  R  Q  R  G  P  M  T  R  K  R  N  K  M  K  K  V  T  S  F  C  C  I  L  F  T  R  S  I  S  S  *  A  S  H  W  F  Q  S  A  C  H  G  *  S  S  M  E  M  L  K  S  E  S  Y  S  P  R  G  A  L  L  A  E  A  K  S  I  Q  T  N  *  I  N  I  N  Y  Y  Y  N  F  C  L  P  L  R  F  Y  F  W  R  T  S  F  V  T  A  Q  L  N  G  I  F  Y  S  S  T  E  V  S  *  Q  N  S  T  R  C  V  I  L  E  *  H  L  S  Y  *  L  *  S  C  L  L  H  P  L  T  I  F  S  S  L  W  V  P  H  V  S  G  L  V  M  E  N  F  V  R  S  I  V  I  I  R  M  H  A  C  I  S  F  C  H  N  P  R  S  F  Q  S  L  I  V  L  Q  F  *  *  T  T  C  V  F  A  L  H  V  *  L  L  K  S  I  C  Q  L  F  C  R  L  L  V  I  W  T  N  L  T  Y  *  Y  V  V  E  K  R  K  R  T  E  E  T  P  P  Q  T  G  A  A  N  G  S  R  T  D  S  N  G  G  G  P  A  :  A  A  S  R  Q  G  K  P  S  A  Q  D  V  A  E  P  N  N  I  L  F  I  Q  N  L  P  Y  E  T  T  S  M  M  L  E  V  L  F  K  Q  Y  P  G  F  R  E  V  R  M  I  E  A  K  P  G  I  A  F  V  E  F  D  D  D  V  Q  S  S  V  A  M  Q  A  L  Q  G  F  K  I  T  P  Q  N  P  M  A  I  T  Y  A  K  K  *  A  F  L  I  P  V  H  A  G  Y  C  M  F  T  P  *  V  N  V  E  G  T  C  I  I  H  L  S  R  L  L  L  G  L  C  S  Q  *  K  C  F  K  Q  F  D  F  M  Y  *  S  *  E  N  M  C  L  V  V  V  F  L  S  S  Q  C  E  L  N  Q  I  F  V  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84165" stop="84003"/>
                    <exon start="82813" stop="82581"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LQTLRILWRRFRNHSEYTDSEKVALLFSVMMLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFSEVTSASNAVRQMQNFPFYDKPMVSIMTVGIVICFSCSLFMY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80426" stop="80331"/>
                    <exon start="80001" stop="79723"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YVVEKRKRTEETPPQTGAANGSRTDSNGGGPAAASRQGKPSAQDVAEPNNILFIQNLPYETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81138" stop="80926"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFDIMQRIQYAKSKSDCIAKAEGTYDKKKKQDEKGDFILLYIIHPLHFLLSFSLVPKCMSWIIIYGNVKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="2" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82259" stop="82053"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLYQVILLKLMLIQYLSKRYAKLFFTECGNPHPNHPAQEPNSAFSYFASMVTRTRDCMVGGGGPGPSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="85858" PGL_stop="92036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85858" e_stop="86254"/>
            <exon e_start="86490" e_stop="86653"/>
            <exon e_start="88259" e_stop="88470"/>
            <exon e_start="89204" e_stop="89458"/>
            <exon e_start="89597" e_stop="89683"/>
            <exon e_start="90800" e_stop="90972"/>
            <exon e_start="91431" e_stop="91887"/>
            <exon e_start="92027" e_stop="92036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.218" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85858" e_stop="86254" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86490" e_stop="86653" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.836">
            <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88259" e_stop="88470" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="88471" i_stop="89203" i_length="733"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89204" e_stop="89458" e_length="255"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.942">
            <gDNA_intron_boundary i_start="89459" i_stop="89596" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89597" e_stop="89683" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89684" i_stop="90799" i_length="1116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90800" e_stop="90972" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.218" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90973" i_stop="91430" i_length="458"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91431" e_stop="91887" e_length="457"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91888" i_stop="92026" i_length="139"/>
          </intron>
          <exon e_serial="8" e_score="0.600">
            <gDNA_exon_boundary e_start="92027" e_stop="92036" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85858" stop="86254"/>
              <exon start="86490" stop="86580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85876" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85884" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85888" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85888" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86254"/>
              <exon start="86490" stop="86541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85936" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85972" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85974" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86499" stop="86653"/>
              <exon start="88259" stop="88470"/>
              <exon start="89204" stop="89458"/>
              <exon start="89597" stop="89683"/>
              <exon start="90800" stop="90923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86545" stop="86653"/>
              <exon start="88259" stop="88470"/>
              <exon start="89204" stop="89298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89418" stop="89458"/>
              <exon start="89597" stop="89683"/>
              <exon start="90800" stop="90972"/>
              <exon start="91431" stop="91808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89648" stop="89683"/>
              <exon start="90800" stop="90972"/>
              <exon start="91431" stop="91803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91442" stop="91887"/>
              <exon start="92027" stop="92036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344048" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGCCGGCTAAAACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG : GAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG : GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAG : GATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGATGAAGGGTGCTGATGTGGTACAAATACCAGAAGATTATACTCTTCTTGACCTGGTTCAGATCGGGCTTAATTCGACTCACGCGGCTGTTGGGGTGCTAGTTCGTTTGAGGGAAGAATTATCCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAA : TACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACT : GTGAATGCATTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCAGTTTGTCATTACTACCTGAG : ACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAA : GAGAAGATAA</gDNA_template>
            <first_frame> I  R  R  L  K  P  L  S  S  K  T  L  K  K  C  S  G  Q  Y  S  D  Q  P  L  R  R  R  N  P  I  P  P  P  E  I  S  V  Y  R  Q  Q  S  Q  H  L  L  R  S  L  L  P  E  P  S  R  Q  A  H  T  R  R  N  P  T  S  D  R  I  *  N  T  K  M  L  Q  Q  V  P  K  L  L  K  R  S  T  R  I  F  V  H  A  F  S  K  K  T  R  R  I  N  H  W  I  *  V  Q  M  V  V  H  Y  S  L  R  Q  L  L  F  L  S  L  P  K  K  I  H  V  L  T  *  N  S   : G  G  K  S  W  I  E  F  C  R  R  D  Y  Q  W  G  C  L  R  N  S  V  T  L  *  E  M  H  C  *  Y  A  R  V  F  W  I  F  E  I  I  L  E  W  L  L  I  L  L  C  N  L  I  L  K  :  V  S  K  L  E  S  K  L  Y  *  M  G  L  *  V  L  V  R  V  L  P  L  Q  C  L  L  I  G  H  V  M  K  V  G  *  F  F  M  F  L  K  A  E  N  G  L  M  E  A  F  S  I  K  I  L  K  Q  D  Y  G  I  L  L  C  K  Q  Q  M  F  S  R :   I  S  *  S  I  I  R  I  T  S  K  R  Y  P  A  K  F  L  N  L  F  H  W  E  R  E  L  V  L  D  G  *  R  V  L  M  W  Y  K  Y  Q  K  I  I  L  F  L  T  W  F  R  S  G  L  I  R  L  T  R  L  L  G  C  *  F  V  *  G  K  N  Y  P  L  S  R  T  C  L  F  L  L  P  L  I  N :   T  T  V  G  S  H  S  A  S  M  R  S  Q  *  L  F  V  L  A  D  L  F  M  L  E  N  L  Q  L :   *  M  H  L  G  P  *  F  M  T  I  *  W  W  V  L  S  R  I  Q  L  L  *  G  S  Y  A  K  T  Y  Q  M  F  L  Q  M  L  A  S  I  S  H  V  I  V  W  M  K  L  H  Q  F  V  I  T  T  *   : D  N  D  S  F  S  V  R  H  L  Q  N  K  A  G  R  K  S  I  I  F  Q  M  E  M  V  Q  K  *  D  G  W  F  L  S  *  D  E  P  Q  R  I  D  L  Q  Q  I  T  L  R  F  *  P  V  L  H  L  L  V  L  C  E  S  G  H  S  Q  Q  Q  I  I  W  L  L  S  *  R  T  L  *  V  R  F  A  S  *  N  F  A  L  Y  S  R  L  V  *  A  Y  T  A  C  V  C  M  L  W  Y  P  E  H  N  R  R  F  I  Y  T  S  L  H  W  A  I  V  L  S  N  F  F  C  L  F  F  L  T  *  C  I  N  S  I  M  L  *  L  R  N  T  L  N  L  S  K :   R  R  * </first_frame>
            <second_frame>  F  A  G  *  N  P  *  V  P  K  P  *  R  N  A  P  V  N  T  P  I  S  R  Y  G  G  E  I  P  S  H  H  R  R  Y  P  Y  T  G  S  N  L  S  I  F  *  G  L  F  F  Q  N  L  R  D  K  H  T  P  E  E  T  Q  L  Q  T  G  Y  K  T  R  K  C  C  S  R  C  Q  S  C  *  N  A  Q  Q  G  S  S  C  T  L  S  Q  R  R  R  E  G  *  I  T  G  Y  R  S  R  W  S  F  T  I  H  F  G  S  F  Y  F  *  A  Y  Q  K  R  Y  M  Y  L  H  E  I  Q  :  E  G  R  A  G  *  S  F  A  G  G  I  T  S  G  D  A  *  G  I  R  *  L  Y  E  R  C  I  A  N  T  P  E  F  F  G  S  S  R  *  F  *  N  G  C  *  S  Y  F  A  I  *  Y  *  R :   S  Q  S  S  K  A  S  C  I  R  W  A  C  E  F  W  *  E  Y  C  P  C  N  A  C  *  L  G  T  *  *  R  L  A  S  S  L  C  S  *  R  P  R  M  D  S  W  R  L  F  L  *  K  S  *  N  R  I  M  G  Y  S  C  A  S  S  K  C  S  P   : G  F  L  E  V  *  *  G  S  P  P  K  D  T  L  Q  N  F  *  T  Y  S  I  G  R  G  S  W  C  W  M  D  E  G  C  *  C  G  T  N  T  R  R  L  Y  S  S  *  P  G  S  D  R  A  *  F  D  S  R  G  C  W  G  A  S  S  F  E  G  R  I  I  P  C  Q  G  R  A  C  S  Y  C  R  *  S   : I  Q  Q  L  V  H  I  Q  R  V  *  G  A  S  N  C  S  F  L  P  T  Y  S  C  *  R  T  C  N   : C  E  C  I  *  V  H  D  S  *  Q  Y  D  G  G  C  F  L  A  F  N  C  C  R  E  A  T  Q  R  L  T  R  C  S  C  R  C  S  R  Q  F  P  T  L  *  C  G  *  S  C  I  S  L  S  L  L  P  E  :  T  T  T  H  S  A  *  G  I  Y  R  T  K  L  E  E  N  L  L  S  F  K  W  K  W  F  R  N  E  M  A  G  S  F  H  E  M  N  H  K  E  S  I  F  N  R  *  L  *  D  F  N  L  Y  C  I  C  *  C  S  V  N  L  V  I  L  S  N  K  *  S  G  C  F  L  D  E  L  S  K  *  G  L  L  L  E  I  L  L  C  T  L  G  *  F  R  R  I  L  P  V  F  V  C  F  G  I  Q  N  I  T  A  D  S  Y  I  H  H  Y  T  G  L  L  F  F  P  I  S  F  A  C  F  F  *  P  D  V  L  I  Q  *  C  C  N  C  A  I  H  *  T  F  R   : R  E  D   </second_frame>
            <third_frame>   S  P  A  K  T  L  E  F  Q  N  P  E  E  M  L  R  S  I  L  R  S  A  A  T  A  A  K  S  H  P  T  T  G  D  I  R  I  Q  A  A  I  S  A  S  S  K  V  S  S  S  R  T  F  A  T  S  T  H  P  K  K  P  N  F  R  P  D  I  K  H  E  N  A  A  A  G  A  K  A  A  E  T  L  N  K  D  L  R  A  R  F  L  K  E  D  E  K  D  K  S  L  D  I  G  P  D  G  R  S  L  F  T  S  A  A  S  I  S  E  L  T  K  K  D  T  C  T  Y  M  K  F  R :   R  E  E  L  D  R  V  L  P  E  G  L  P  V  G  M  L  K  E  F  G  D  S  M  R  D  A  L  L  I  R  Q  S  F  L  D  L  R  D  N  F  R  M  V  V  D  P  T  L  Q  S  N  T  K   : G  L  K  A  R  K  Q  V  V  L  D  G  P  V  S  S  G  K  S  I  A  L  A  M  L  V  N  W  A  R  D  E  G  W  L  V  L  Y  V  P  K  G  R  E  W  T  H  G  G  F  F  Y  K  N  P  K  T  G  L  W  D  T  P  V  Q  A  A  N  V  L  Q  :  D  F  L  K  Y  N  K  D  H  L  Q  K  I  P  C  K  I  F  E  P  I  P  L  G  E  G  A  G  V  G  W  M  K  G  A  D  V  V  Q  I  P  E  D  Y  T  L  L  D  L  V  Q  I  G  L  N  S  T  H  A  A  V  G  V  L  V  R  L  R  E  E  L  S  L  V  K  D  V  P  V  L  I  A  V  D  Q  :  Y  N  S  W  F  T  F  S  E  Y  E  E  P  V  T  V  R  S  C  R  P  I  H  A  R  E  L  A  T  :  V  N  A  F  R  S  M  I  H  D  N  M  M  V  G  A  F  S  H  S  T  A  V  G  K  L  R  K  D  L  P  D  V  P  A  D  A  R  V  N  F  P  R  Y  S  V  D  E  A  A  S  V  C  H  Y  Y  L  R :   Q  R  L  I  Q  R  E  A  F  T  E  Q  S  W  K  K  I  Y  Y  L  S  N  G  N  G  S  E  M  R  W  L  V  P  F  M  R  *  T  T  K  N  R  S  S  T  D  N  F  E  I  L  T  C  I  A  S  V  S  A  L  *  I  W  S  F  S  A  T  N  N  L  A  A  F  L  T  N  S  L  S  E  V  C  F  L  K  F  C  S  V  L  *  A  S  L  G  V  Y  C  L  C  L  Y  A  L  V  S  R  T  *  P  Q  I  H  I  Y  I  I  T  L  G  Y  C  S  F  Q  F  L  L  L  V  F  S  D  L  M  Y  *  F  N  N  V  V  I  A  Q  Y  I  K  P  F  E  :  E  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85860" stop="86254"/>
                    <exon start="86490" stop="86653"/>
                    <exon start="88259" stop="88470"/>
                    <exon start="89204" stop="89458"/>
                    <exon start="89597" stop="89683"/>
                    <exon start="90800" stop="90972"/>
                    <exon start="91431" stop="91542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPAKTLEFQNPEEMLRSILRSAATAAKSHPTTGDIRIQAAISASSKVSSSRTFATSTHPKKPNFRPDIKHENAAAGAKAAETLNKDLRARFLKEDEKDKSLDIGPDGRSLFTSAASISELTKKDTCTYMKFRREELDRVLPEGLPVGMLKEFGDSMRDALLIRQSFLDLRDNFRMVVDPTLQSNTKGLKARKQVVLDGPVSSGKSIALAMLVNWARDEGWLVLYVPKGREWTHGGFFYKNPKTGLWDTPVQAANVLQDFLKYNKDHLQKIPCKIFEPIPLGEGAGVGWMKGADVVQIPEDYTLLDLVQIGLNSTHAAVGVLVRLREELSLVKDVPVLIAVDQYNSWFTFSEYEEPVTVRSCRPIHARELATVNAFRSMIHDNMMVGAFSHSTAVGKLRKDLPDVPADARVNFPRYSVDEAASVCHYYLRQRLIQREAFTEQSWKKIYYLSNGNGSEMRWLVPFMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="85858" e_stop="86254"/>
            <exon e_start="86490" e_stop="86653"/>
            <exon e_start="88259" e_stop="88470"/>
            <exon e_start="89204" e_stop="89458"/>
            <exon e_start="89597" e_stop="89683"/>
            <exon e_start="90800" e_stop="90972"/>
            <exon e_start="91431" e_stop="91959"/>
            <exon e_start="92027" e_stop="92036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.866" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.836" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.914" e_score="1.000"/>
          <exon-intron don_prob="0.891" acc_prob="0.942" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.218" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="85858" e_stop="86254" e_length="397"/>
          </exon>
          <intron i_serial="1" don_prob="0.866" acc_prob="1.000">
            <gDNA_intron_boundary i_start="86255" i_stop="86489" i_length="235"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="86490" e_stop="86653" e_length="164"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.836">
            <gDNA_intron_boundary i_start="86654" i_stop="88258" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="88259" e_stop="88470" e_length="212"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.914">
            <gDNA_intron_boundary i_start="88471" i_stop="89203" i_length="733"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89204" e_stop="89458" e_length="255"/>
          </exon>
          <intron i_serial="4" don_prob="0.891" acc_prob="0.942">
            <gDNA_intron_boundary i_start="89459" i_stop="89596" i_length="138"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="89597" e_stop="89683" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.980" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89684" i_stop="90799" i_length="1116"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="90800" e_stop="90972" e_length="173"/>
          </exon>
          <intron i_serial="6" don_prob="0.218" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90973" i_stop="91430" i_length="458"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="91431" e_stop="91959" e_length="529"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="91960" i_stop="92026" i_length="67"/>
          </intron>
          <exon e_serial="8" e_score="0.600">
            <gDNA_exon_boundary e_start="92027" e_stop="92036" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85858" stop="86254"/>
              <exon start="86490" stop="86580"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442666" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85871" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E468192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85876" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E582858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85884" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88296"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85888" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371002" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85888" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88350"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E448790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85896" stop="86254"/>
              <exon start="86490" stop="86541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85936" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88273"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85972" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85974" stop="86254"/>
              <exon start="86490" stop="86653"/>
              <exon start="88259" stop="88352"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419508" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86499" stop="86653"/>
              <exon start="88259" stop="88470"/>
              <exon start="89204" stop="89458"/>
              <exon start="89597" stop="89683"/>
              <exon start="90800" stop="90923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703929" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86545" stop="86653"/>
              <exon start="88259" stop="88470"/>
              <exon start="89204" stop="89298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89418" stop="89458"/>
              <exon start="89597" stop="89683"/>
              <exon start="90800" stop="90972"/>
              <exon start="91431" stop="91808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E371001" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89648" stop="89683"/>
              <exon start="90800" stop="90972"/>
              <exon start="91431" stop="91803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579218" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91551" stop="91959"/>
              <exon start="92027" stop="92036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354475" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTCGCCGGCTAAAACCCTTGAGTTCCAAAACCCTGAAGAAATGCTCCGGTCAATACTCCGATCAGCCGCTACGGCGGCGAAATCCCATCCCACCACCGGAGATATCCGTATACAGGCAGCAATCTCAGCATCTTCTAAGGTCTCTTCTTCCAGAACCTTCGCGACAAGCACACACCCGAAGAAACCCAACTTCAGACCGGATATAAAACACGAAAATGCTGCAGCAGGTGCCAAAGCTGCTGAAACGCTCAACAAGGATCTTCGTGCACGCTTTCTCAAAGAAGACGAGAAGGATAAATCACTGGATATAGGTCCAGATGGTCGTTCACTATTCACTTCGGCAGCTTCTATTTCTGAGCTTACCAAAAAAGATACATGTACTTACATGAAATTCAG : GAGGGAAGAGCTGGATAGAGTTTTGCCGGAGGGATTACCAGTGGGGATGCTTAAGGAATTCGGTGACTCTATGAGAGATGCATTGCTAATACGCCAGAGTTTTTTGGATCTTCGAGATAATTTTAGAATGGTTGTTGATCCTACTTTGCAATCTAATACTAAAG : GTCTCAAAGCTCGAAAGCAAGTTGTATTAGATGGGCCTGTGAGTTCTGGTAAGAGTATTGCCCTTGCAATGCTTGTTAATTGGGCACGTGATGAAGGTTGGCTAGTTCTTTATGTTCCTAAAGGCCGAGAATGGACTCATGGAGGCTTTTTCTATAAAAATCCTAAAACAGGATTATGGGATACTCCTGTGCAAGCAGCAAATGTTCTCCAG : GATTTCTTGAAGTATAATAAGGATCACCTCCAAAAGATACCCTGCAAAATTTTTGAACCTATTCCATTGGGAGAGGGAGCTGGTGTTGGATGGATGAAGGGTGCTGATGTGGTACAAATACCAGAAGATTATACTCTTCTTGACCTGGTTCAGATCGGGCTTAATTCGACTCACGCGGCTGTTGGGGTGCTAGTTCGTTTGAGGGAAGAATTATCCCTTGTCAAGGACGTGCCTGTTCTTATTGCCGTTGATCAA : TACAACAGTTGGTTCACATTCAGCGAGTATGAGGAGCCAGTAACTGTTCGTTCTTGCCGACCTATTCATGCTAGAGAACTTGCAACT : GTGAATGCATTTAGGTCCATGATTCATGACAATATGATGGTGGGTGCTTTCTCGCATTCAACTGCTGTAGGGAAGCTACGCAAAGACTTACCAGATGTTCCTGCAGATGCTCGCGTCAATTTCCCACGTTATAGTGTGGATGAAGCTGCATCAGTTTGTCATTACTACCTGAG : ACAACGACTCATTCAGCGTGAGGCATTTACAGAACAAAGCTGGAAGAAAATCTATTATCTTTCAAATGGAAATGGTTCAGAAATGAGATGGCTGGTTCCTTTCATGAGATGAACCACAAAGAATCGATCTTCAACAGATAACTTTGAGATTTTAACCTGTATTGCATCTGTTAGTGCTCTGTGAATCTGGTCATTCTCAGCAACAAATAATCTGGCTGCTTTCTTGACGAACTCTCTAAGTGAGGTTTGCTTCTTGAAATTTTGCTCTGTACTCTAGGCTAGTTTAGGCGTATACTGCCTGTGTTTGTATGCTTTGGTATCCAGAACATAACCGCAGATTCATATATACATCATTACACTGGGCTATTGTTCTTTCCAATTTCTTTTGCTTGTTTTTTCTGACCTGATGTATTAATTCAATAATGTTGTAATTGCGCAATACATTAAACCTTTCGAATTCTTAGGCTTTATCCTTAGCAAGATGGATGCTTTTAAGATTTACCGCTGTAAAGATGACAGTTCTTCGATC : GAGAAGATAA</gDNA_template>
            <first_frame> I  R  R  L  K  P  L  S  S  K  T  L  K  K  C  S  G  Q  Y  S  D  Q  P  L  R  R  R  N  P  I  P  P  P  E  I  S  V  Y  R  Q  Q  S  Q  H  L  L  R  S  L  L  P  E  P  S  R  Q  A  H  T  R  R  N  P  T  S  D  R  I  *  N  T  K  M  L  Q  Q  V  P  K  L  L  K  R  S  T  R  I  F  V  H  A  F  S  K  K  T  R  R  I  N  H  W  I  *  V  Q  M  V  V  H  Y  S  L  R  Q  L  L  F  L  S  L  P  K  K  I  H  V  L  T  *  N  S   : G  G  K  S  W  I  E  F  C  R  R  D  Y  Q  W  G  C  L  R  N  S  V  T  L  *  E  M  H  C  *  Y  A  R  V  F  W  I  F  E  I  I  L  E  W  L  L  I  L  L  C  N  L  I  L  K  :  V  S  K  L  E  S  K  L  Y  *  M  G  L  *  V  L  V  R  V  L  P  L  Q  C  L  L  I  G  H  V  M  K  V  G  *  F  F  M  F  L  K  A  E  N  G  L  M  E  A  F  S  I  K  I  L  K  Q  D  Y  G  I  L  L  C  K  Q  Q  M  F  S  R :   I  S  *  S  I  I  R  I  T  S  K  R  Y  P  A  K  F  L  N  L  F  H  W  E  R  E  L  V  L  D  G  *  R  V  L  M  W  Y  K  Y  Q  K  I  I  L  F  L  T  W  F  R  S  G  L  I  R  L  T  R  L  L  G  C  *  F  V  *  G  K  N  Y  P  L  S  R  T  C  L  F  L  L  P  L  I  N :   T  T  V  G  S  H  S  A  S  M  R  S  Q  *  L  F  V  L  A  D  L  F  M  L  E  N  L  Q  L :   *  M  H  L  G  P  *  F  M  T  I  *  W  W  V  L  S  R  I  Q  L  L  *  G  S  Y  A  K  T  Y  Q  M  F  L  Q  M  L  A  S  I  S  H  V  I  V  W  M  K  L  H  Q  F  V  I  T  T  *   : D  N  D  S  F  S  V  R  H  L  Q  N  K  A  G  R  K  S  I  I  F  Q  M  E  M  V  Q  K  *  D  G  W  F  L  S  *  D  E  P  Q  R  I  D  L  Q  Q  I  T  L  R  F  *  P  V  L  H  L  L  V  L  C  E  S  G  H  S  Q  Q  Q  I  I  W  L  L  S  *  R  T  L  *  V  R  F  A  S  *  N  F  A  L  Y  S  R  L  V  *  A  Y  T  A  C  V  C  M  L  W  Y  P  E  H  N  R  R  F  I  Y  T  S  L  H  W  A  I  V  L  S  N  F  F  C  L  F  F  L  T  *  C  I  N  S  I  M  L  *  L  R  N  T  L  N  L  S  N  S  *  A  L  S  L  A  R  W  M  L  L  R  F  T  A  V  K  M  T  V  L  R  S :   R  R  * </first_frame>
            <second_frame>  F  A  G  *  N  P  *  V  P  K  P  *  R  N  A  P  V  N  T  P  I  S  R  Y  G  G  E  I  P  S  H  H  R  R  Y  P  Y  T  G  S  N  L  S  I  F  *  G  L  F  F  Q  N  L  R  D  K  H  T  P  E  E  T  Q  L  Q  T  G  Y  K  T  R  K  C  C  S  R  C  Q  S  C  *  N  A  Q  Q  G  S  S  C  T  L  S  Q  R  R  R  E  G  *  I  T  G  Y  R  S  R  W  S  F  T  I  H  F  G  S  F  Y  F  *  A  Y  Q  K  R  Y  M  Y  L  H  E  I  Q  :  E  G  R  A  G  *  S  F  A  G  G  I  T  S  G  D  A  *  G  I  R  *  L  Y  E  R  C  I  A  N  T  P  E  F  F  G  S  S  R  *  F  *  N  G  C  *  S  Y  F  A  I  *  Y  *  R :   S  Q  S  S  K  A  S  C  I  R  W  A  C  E  F  W  *  E  Y  C  P  C  N  A  C  *  L  G  T  *  *  R  L  A  S  S  L  C  S  *  R  P  R  M  D  S  W  R  L  F  L  *  K  S  *  N  R  I  M  G  Y  S  C  A  S  S  K  C  S  P   : G  F  L  E  V  *  *  G  S  P  P  K  D  T  L  Q  N  F  *  T  Y  S  I  G  R  G  S  W  C  W  M  D  E  G  C  *  C  G  T  N  T  R  R  L  Y  S  S  *  P  G  S  D  R  A  *  F  D  S  R  G  C  W  G  A  S  S  F  E  G  R  I  I  P  C  Q  G  R  A  C  S  Y  C  R  *  S   : I  Q  Q  L  V  H  I  Q  R  V  *  G  A  S  N  C  S  F  L  P  T  Y  S  C  *  R  T  C  N   : C  E  C  I  *  V  H  D  S  *  Q  Y  D  G  G  C  F  L  A  F  N  C  C  R  E  A  T  Q  R  L  T  R  C  S  C  R  C  S  R  Q  F  P  T  L  *  C  G  *  S  C  I  S  L  S  L  L  P  E  :  T  T  T  H  S  A  *  G  I  Y  R  T  K  L  E  E  N  L  L  S  F  K  W  K  W  F  R  N  E  M  A  G  S  F  H  E  M  N  H  K  E  S  I  F  N  R  *  L  *  D  F  N  L  Y  C  I  C  *  C  S  V  N  L  V  I  L  S  N  K  *  S  G  C  F  L  D  E  L  S  K  *  G  L  L  L  E  I  L  L  C  T  L  G  *  F  R  R  I  L  P  V  F  V  C  F  G  I  Q  N  I  T  A  D  S  Y  I  H  H  Y  T  G  L  L  F  F  P  I  S  F  A  C  F  F  *  P  D  V  L  I  Q  *  C  C  N  C  A  I  H  *  T  F  R  I  L  R  L  Y  P  *  Q  D  G  C  F  *  D  L  P  L  *  R  *  Q  F  F  D   : R  E  D   </second_frame>
            <third_frame>   S  P  A  K  T  L  E  F  Q  N  P  E  E  M  L  R  S  I  L  R  S  A  A  T  A  A  K  S  H  P  T  T  G  D  I  R  I  Q  A  A  I  S  A  S  S  K  V  S  S  S  R  T  F  A  T  S  T  H  P  K  K  P  N  F  R  P  D  I  K  H  E  N  A  A  A  G  A  K  A  A  E  T  L  N  K  D  L  R  A  R  F  L  K  E  D  E  K  D  K  S  L  D  I  G  P  D  G  R  S  L  F  T  S  A  A  S  I  S  E  L  T  K  K  D  T  C  T  Y  M  K  F  R :   R  E  E  L  D  R  V  L  P  E  G  L  P  V  G  M  L  K  E  F  G  D  S  M  R  D  A  L  L  I  R  Q  S  F  L  D  L  R  D  N  F  R  M  V  V  D  P  T  L  Q  S  N  T  K   : G  L  K  A  R  K  Q  V  V  L  D  G  P  V  S  S  G  K  S  I  A  L  A  M  L  V  N  W  A  R  D  E  G  W  L  V  L  Y  V  P  K  G  R  E  W  T  H  G  G  F  F  Y  K  N  P  K  T  G  L  W  D  T  P  V  Q  A  A  N  V  L  Q  :  D  F  L  K  Y  N  K  D  H  L  Q  K  I  P  C  K  I  F  E  P  I  P  L  G  E  G  A  G  V  G  W  M  K  G  A  D  V  V  Q  I  P  E  D  Y  T  L  L  D  L  V  Q  I  G  L  N  S  T  H  A  A  V  G  V  L  V  R  L  R  E  E  L  S  L  V  K  D  V  P  V  L  I  A  V  D  Q  :  Y  N  S  W  F  T  F  S  E  Y  E  E  P  V  T  V  R  S  C  R  P  I  H  A  R  E  L  A  T  :  V  N  A  F  R  S  M  I  H  D  N  M  M  V  G  A  F  S  H  S  T  A  V  G  K  L  R  K  D  L  P  D  V  P  A  D  A  R  V  N  F  P  R  Y  S  V  D  E  A  A  S  V  C  H  Y  Y  L  R :   Q  R  L  I  Q  R  E  A  F  T  E  Q  S  W  K  K  I  Y  Y  L  S  N  G  N  G  S  E  M  R  W  L  V  P  F  M  R  *  T  T  K  N  R  S  S  T  D  N  F  E  I  L  T  C  I  A  S  V  S  A  L  *  I  W  S  F  S  A  T  N  N  L  A  A  F  L  T  N  S  L  S  E  V  C  F  L  K  F  C  S  V  L  *  A  S  L  G  V  Y  C  L  C  L  Y  A  L  V  S  R  T  *  P  Q  I  H  I  Y  I  I  T  L  G  Y  C  S  F  Q  F  L  L  L  V  F  S  D  L  M  Y  *  F  N  N  V  V  I  A  Q  Y  I  K  P  F  E  F  L  G  F  I  L  S  K  M  D  A  F  K  I  Y  R  C  K  D  D  S  S  S  I  :  E  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85860" stop="86254"/>
                    <exon start="86490" stop="86653"/>
                    <exon start="88259" stop="88470"/>
                    <exon start="89204" stop="89458"/>
                    <exon start="89597" stop="89683"/>
                    <exon start="90800" stop="90972"/>
                    <exon start="91431" stop="91542"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1395</number_coding_nucleotides>
                  <number_encoded_amino_acids>465</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPAKTLEFQNPEEMLRSILRSAATAAKSHPTTGDIRIQAAISASSKVSSSRTFATSTHPKKPNFRPDIKHENAAAGAKAAETLNKDLRARFLKEDEKDKSLDIGPDGRSLFTSAASISELTKKDTCTYMKFRREELDRVLPEGLPVGMLKEFGDSMRDALLIRQSFLDLRDNFRMVVDPTLQSNTKGLKARKQVVLDGPVSSGKSIALAMLVNWARDEGWLVLYVPKGREWTHGGFFYKNPKTGLWDTPVQAANVLQDFLKYNKDHLQKIPCKIFEPIPLGEGAGVGWMKGADVVQIPEDYTLLDLVQIGLNSTHAAVGVLVRLREELSLVKDVPVLIAVDQYNSWFTFSEYEEPVTVRSCRPIHARELATVNAFRSMIHDNMMVGAFSHSTAVGKLRKDLPDVPADARVNFPRYSVDEAASVCHYYLRQRLIQREAFTEQSWKKIYYLSNGNGSEMRWLVPFMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="94062" PGL_stop="92153"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94062" e_stop="93576"/>
            <exon e_start="93148" e_stop="92936"/>
            <exon e_start="92259" e_stop="92153"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.994" e_score="0.922"/>
          <exon-intron don_prob="0.975" acc_prob="0.982" e_score="0.977"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="94062" e_stop="93576" e_length="487"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.994">
            <gDNA_intron_boundary i_start="93575" i_stop="93149" i_length="427"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="93148" e_stop="92936" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.982">
            <gDNA_intron_boundary i_start="92935" i_stop="92260" i_length="676"/>
          </intron>
          <exon e_serial="3" e_score="0.935">
            <gDNA_exon_boundary e_start="92259" e_stop="92153" e_length="107"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94062" stop="93576"/>
              <exon start="93148" stop="92936"/>
              <exon start="92259" stop="92153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93909" stop="93576"/>
              <exon start="93148" stop="93111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335588" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATTAAATTCATCAAATTGAAATATTTTCCAACTCGTCTCCTTTATTCGATTATAATTACAATATAAAAAATATCCCTTGTTGCCAAAAGTAATTTATAAAGTTAAATTCGTCCGACTTTTAATTTGATTCTTGTCGAAGCAAAACGCCGGCGAACTCCGGTCATTGCCACCATCATCTTCAAAATTTTCCGTCTCTTTTGGCGGAGTTATCCTCCCGGAGTTCGTCAATTTTAAGCTGGTTGATGGAAACCACTGCTACGCCGGAGGAGTGGCCGCCGGACGGGCAATTTCCATTTGATCTTTTTGTATCGAAGAAGTATAAGTCCTTCTGGGATGCTGGAAACATCCAATTTACCGATGCTGTTGGTAATTTGTTCTTCAGCGTTGACCGTCGTCAACCTCAGAATTCGGCAGCCCAGACCCACCCTCAAAAACTAATTCTCGATGCATCGGACAATACCCTGATTCGCTTAGTTCGATTAACT : AAAGGATCATGGCAAGGCTTTATGGTAAGTGATAATGAAGAAAAGGCGTTGATGTTCAGTGTGAATAAGACACTAAATACATTCACTAAACTAGAGTTTGACATATTCCTTGGTGATGGACATGTTGAAGGCGCAGAGGCTGATCTTAAGATGAAAGGTTCTGCCTTCAAGAGATCATGCACCATCTACAAAGGCAATTCCATAGTAGCTGAG : ACTAGCCTTATGTACACACTTGGGTTCAGGAAGCATTTCATTCCAAGGAACAGATTTCGAGTAACCATATTTCCCGGTTTGACTGAGCTTAGCCTTGTTGTGGCTTT</gDNA_template>
            <first_frame> I  L  N  S  S  N  *  N  I  F  Q  L  V  S  F  I  R  L  *  L  Q  Y  K  K  Y  P  L  L  P  K  V  I  Y  K  V  K  F  V  R  L  L  I  *  F  L  S  K  Q  N  A  G  E  L  R  S  L  P  P  S  S  S  K  F  S  V  S  F  G  G  V  I  L  P  E  F  V  N  F  K  L  V  D  G  N  H  C  Y  A  G  G  V  A  A  G  R  A  I  S  I  *  S  F  C  I  E  E  V  *  V  L  L  G  C  W  K  H  P  I  Y  R  C  C  W  *  F  V  L  Q  R  *  P  S  S  T  S  E  F  G  S  P  D  P  P  S  K  T  N  S  R  C  I  G  Q  Y  P  D  S  L  S  S  I  N   : *  R  I  M  A  R  L  Y  G  K  *  *  *  R  K  G  V  D  V  Q  C  E  *  D  T  K  Y  I  H  *  T  R  V  *  H  I  P  W  *  W  T  C  *  R  R  R  G  *  S  *  D  E  R  F  C  L  Q  E  I  M  H  H  L  Q  R  Q  F  H  S  S  *   : D  *  P  Y  V  H  T  W  V  Q  E  A  F  H  S  K  E  Q  I  S  S  N  H  I  S  R  F  D  *  A  *  P  C  C  G  F </first_frame>
            <second_frame>  Y  *  I  H  Q  I  E  I  F  S  N  S  S  P  L  F  D  Y  N  Y  N  I  K  N  I  P  C  C  Q  K  *  F  I  K  L  N  S  S  D  F  *  F  D  S  C  R  S  K  T  P  A  N  S  G  H  C  H  H  H  L  Q  N  F  P  S  L  L  A  E  L  S  S  R  S  S  S  I  L  S  W  L  M  E  T  T  A  T  P  E  E  W  P  P  D  G  Q  F  P  F  D  L  F  V  S  K  K  Y  K  S  F  W  D  A  G  N  I  Q  F  T  D  A  V  G  N  L  F  F  S  V  D  R  R  Q  P  Q  N  S  A  A  Q  T  H  P  Q  K  L  I  L  D  A  S  D  N  T  L  I  R  L  V  R  L  T  :  K  G  S  W  Q  G  F  M  V  S  D  N  E  E  K  A  L  M  F  S  V  N  K  T  L  N  T  F  T  K  L  E  F  D  I  F  L  G  D  G  H  V  E  G  A  E  A  D  L  K  M  K  G  S  A  F  K  R  S  C  T  I  Y  K  G  N  S  I  V  A  E  :  T  S  L  M  Y  T  L  G  F  R  K  H  F  I  P  R  N  R  F  R  V  T  I  F  P  G  L  T  E  L  S  L  V  V  A   </second_frame>
            <third_frame>   I  K  F  I  K  L  K  Y  F  P  T  R  L  L  Y  S  I  I  I  T  I  *  K  I  S  L  V  A  K  S  N  L  *  S  *  I  R  P  T  F  N  L  I  L  V  E  A  K  R  R  R  T  P  V  I  A  T  I  I  F  K  I  F  R  L  F  W  R  S  Y  P  P  G  V  R  Q  F  *  A  G  *  W  K  P  L  L  R  R  R  S  G  R  R  T  G  N  F  H  L  I  F  L  Y  R  R  S  I  S  P  S  G  M  L  E  T  S  N  L  P  M  L  L  V  I  C  S  S  A  L  T  V  V  N  L  R  I  R  Q  P  R  P  T  L  K  N  *  F  S  M  H  R  T  I  P  *  F  A  *  F  D  *  L :   K  D  H  G  K  A  L  W  *  V  I  M  K  K  R  R  *  C  S  V  *  I  R  H  *  I  H  S  L  N  *  S  L  T  Y  S  L  V  M  D  M  L  K  A  Q  R  L  I  L  R  *  K  V  L  P  S  R  D  H  A  P  S  T  K  A  I  P  *  *  L  R :   L  A  L  C  T  H  L  G  S  G  S  I  S  F  Q  G  T  D  F  E  *  P  Y  F  P  V  *  L  S  L  A  L  L  W  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93938" stop="93576"/>
                    <exon start="93148" stop="92936"/>
                    <exon start="92259" stop="92155"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>681</number_coding_nucleotides>
                  <number_encoded_amino_acids>227</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDSCRSKTPANSGHCHHHLQNFPSLLAELSSRSSSILSWLMETTATPEEWPPDGQFPFDLFVSKKYKSFWDAGNIQFTDAVGNLFFSVDRRQPQNSAAQTHPQKLILDASDNTLIRLVRLTKGSWQGFMVSDNEEKALMFSVNKTLNTFTKLEFDIFLGDGHVEGAEADLKMKGSAFKRSCTIYKGNSIVAETSLMYTLGFRKHFIPRNRFRVTIFPGLTELSLVVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="95314" PGL_stop="99841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="95325" e_stop="95511"/>
            <exon e_start="95606" e_stop="95686"/>
            <exon e_start="96316" e_stop="96407"/>
            <exon e_start="96814" e_stop="96882"/>
            <exon e_start="96979" e_stop="97020"/>
            <exon e_start="98183" e_stop="98334"/>
            <exon e_start="98433" e_stop="98557"/>
            <exon e_start="98969" e_stop="99053"/>
            <exon e_start="99140" e_stop="99213"/>
            <exon e_start="99314" e_stop="99841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.728" e_score="1.000"/>
          <exon-intron don_prob="0.749" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.840" e_score="0.968"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.953"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95325" e_stop="95511" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.728">
            <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95606" e_stop="95686" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.749" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96316" e_stop="96407" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96814" e_stop="96882" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96979" e_stop="97020" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98183" e_stop="98334" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98335" i_stop="98432" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="0.968">
            <gDNA_exon_boundary e_start="98433" e_stop="98557" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="0.935" acc_prob="0.840">
            <gDNA_intron_boundary i_start="98558" i_stop="98968" i_length="411"/>
          </intron>
          <exon e_serial="8" e_score="0.953">
            <gDNA_exon_boundary e_start="98969" e_stop="99053" e_length="85"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99140" e_stop="99213" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="0.977">
            <gDNA_exon_boundary e_start="99314" e_stop="99841" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95349" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95350" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95376" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98334"/>
              <exon start="98433" stop="98516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E413114" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95376" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95377" stop="95511"/>
              <exon start="95606" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95381" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95381" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98243" stop="98334"/>
              <exon start="98433" stop="98557"/>
              <exon start="98969" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99619"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E452328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98243" stop="98334"/>
              <exon start="98433" stop="98557"/>
              <exon start="98969" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E424404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98288" stop="98334"/>
              <exon start="98433" stop="98557"/>
              <exon start="98969" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99726"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612811" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98496" stop="98557"/>
              <exon start="98969" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99031" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99151" stop="99213"/>
              <exon start="99314" stop="99563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99480" stop="99841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99480" stop="99841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT : GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG : TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG : TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG : AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG : GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGA : ATGCAGGACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAG : CATCTTCAGATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATT : GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG : CTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTACATCTCAACTG</gDNA_template>
            <first_frame> L  H  I  I  Y  C  E  V  P  I  M  *  V  E  V  A  Q  E  T  P  P  L  T  F  F  P  A  A  M  A  A  V  G  E  S  S  S  V  P  A  K  E  D  K  L  V  V  V  R  V  K  R  K  A  F  Q  S  R  L  D  A  F   : W  L  E  I  N  E  R  P  A  K  R  P  L  L  D  F  A  K  L  S  I  D  E  S  S  S  R   : V  E  E  L  K  S  R  K  V  L  V  Q  H  V  E  T  V  T  S  S  E  V  T  V  D  I  V  K  S  F  V  :  S  A  P  A  V  S  S  E  V  E  E  K  S  E  V  R  R  S  F  R  T  E  K  :  K  Q  D  Q  L  L  A  K  A  K  Q  T  Q  E  :  D  L  S  K  N  A  R  F  E  Q  I  W  K  S  R  K  E  K  R  K  L  M  H  N  E  E  L  N  E  M  C  K  L  Y  D  V  I  R  V  D  T  E  E  K  G  R  E  V  Q  E  E :   C  R  T  T  E  L  E  D  H  K  M  M  S  Q  Y  L  P  L  L  R  E  V  M  P  S  A  A  E  E  I  E  S  E  I  H  N  Y  V  V  K  Q   : A  S  S  D  G  Y  V  Y  D  Y  Y  T  V  K  T  D  N  N  P  D  E  D  I  A  C  P  F  P  L :   V  Q  V  D  E  D  D  D  Y  Y  D  G  P  D  H  S  D  Y  E  S  D  D  S  N   : A  E  H  N  P  W  N  D  Y  P  D  E  E  E  S  E  D  E  D  E  T  Q  A  S  N  D  E  S  E  A  S  S  S  T  S  E  E  Q  F  G  S  E  T  V  G  V  I  S  F  K  T  E  D  V  D  R  E  D  W  T  D  Y  A  D  P  I  L  E  D  D  M  Y  G  E  S  D  V  E  A  S  D  D  D  E  D  I  W  *  S  S  L  Q  H  H  V  *  N  F  S  S  V  P  M  S  C  I  P  V  Y  V  F  A  D  H  R  *  P  C  F  V  *  *  H  V  V  M  C  F  E  L  A  N  S  A  I  *  C  S  G  E  W  H  V  V  M  S  L  G  K  D  L  F  P  S  F  C  V  F  K  T  N  L  P  V  L  *  I  S  A  G  F  A  Y  I  S  T  </first_frame>
            <second_frame>  F  I  *  Y  T  V  K  S  Q  L  C  K  S  K  *  L  R  K  H  R  R  *  H  S  F  R  Q  Q  W  L  Q  S  G  R  V  L  L  F  R  R  R  K  T  S  S  S  L  L  G  L  R  E  K  L  S  S  L  D  L  T  L  S  :  G  L  K  S  M  R  G  Q  P  N  D  R  C  S  T  L  Q  S  F  Q  S  M  N  L  L  V  E  :  L  R  N  *  R  A  E  R  Y  L  C  N  M  W  R  P  *  L  A  Q  K  S  L  L  I  S  *  S  L  L  C :   R  L  Q  L  F  L  Q  K  S  K  R  N  L  R  L  G  E  V  L  G  Q  K  R :   N  K  I  N  Y  L  P  R  Q  S  K  R  K  R :   I  C  R  K  M  P  G  L  S  K  Y  G  K  A  E  K  R  R  E  N  *  C  T  M  K  S  *  M  R  C  V  N  Y  M  M  L  F  V  L  I  L  K  K  K  A  E  K  C  K  K   : N  A  G  L  L  S  W  K  I  T  R  *  C  P  N  I  C  L  F  Y  E  K  S  C  Q  V  L  L  K  K  L  S  Q  R  F  I  I  T  *  *  N  K  :  H  L  Q  M  V  T  F  M  T  I  I  L  L  R  L  I  T  T  L  M  R  I  L  L  A  L  F  H   : W  Y  K  L  M  K  M  M  I  T  M  T  A  L  I  I  Q  T  T  N  L  M  I  P  M  :  L  N  I  I  P  G  M  I  T  R  T  K  R  N  L  K  T  R  M  K  P  R  H  Q  M  T  N  Q  K  L  Q  A  A  L  L  R  N  N  L  D  L  K  L  L  V  *  F  L  L  K  L  R  M  W  T  V  K  T  G  Q  I  M  Q  I  Q  S  L  K  M  I  C  M  V  S  P  M  L  K  L  P  M  M  M  R  I  Y  G  D  H  H  Y  N  T  M  F  K  I  S  H  Q  Y  L  C  R  A  Y  L  Y  M  S  L  Q  I  I  V  N  L  A  L  C  D  N  M  *  L  C  V  L  N  L  L  I  L  L  S  D  V  V  V  N  G  M  L  L  C  H  W  A  K  I  F  S  R  A  F  A  F  L  K  L  I  C  Q  Y  C  K  S  Q  P  G  L  P  T  S  Q  L </second_frame>
            <third_frame>   S  Y  N  I  L  *  S  P  N  Y  V  S  R  S  S  S  G  N  T  A  A  D  I  L  S  G  S  N  G  C  S  R  G  E  F  F  C  S  G  E  G  R  Q  A  R  R  C  *  G  *  E  K  S  F  P  V  S  T  *  R  F  L :   A  *  N  Q  *  E  A  S  Q  T  T  V  A  R  L  C  K  A  F  N  R  *  I  F  *  *  S :   *  G  I  E  E  Q  K  G  T  C  A  T  C  G  D  R  N  *  L  R  S  H  C  *  Y  R  E  V  F  C   : V  G  S  S  C  F  F  R  S  R  R  E  I  *  G  *  A  K  F  *  D  R  K   : E  T  R  S  T  T  C  Q  G  K  A  N  A  R   : G  F  V  E  K  C  P  V  *  A  N  M  E  K  Q  K  R  E  E  K  T  N  A  Q  *  R  A  E  *  D  V  *  T  I  *  C  Y  S  C  *  Y  *  R  K  R  P  R  S  A  R  R  :  M  Q  D  Y  *  A  G  R  S  Q  D  D  V  P  I  F  A  S  F  T  R  S  H  A  K  C  C  *  R  N  *  V  R  D  S  *  L  R  S  E  T  S :   I  F  R  W  L  R  L  *  L  L  Y  C  *  D  *  *  Q  P  *  *  G  Y  C  L  P  F  S  I  :  G  T  S  *  *  R  *  *  L  L  *  R  P  *  S  F  R  L  R  I  *  *  F  Q  C :   *  T  *  S  L  E  *  L  P  G  R  R  G  I  *  R  R  G  *  N  P  G  I  K  *  R  I  R  S  F  K  Q  H  F  *  G  T  I  W  I  *  N  C  W  C  N  F  F  *  N  *  G  C  G  P  *  R  L  D  R  L  C  R  S  N  P  *  R  *  Y  V  W  *  V  R  C  *  S  F  R  *  *  *  G  Y  M  V  I  I  T  T  T  P  C  L  K  F  L  I  S  T  Y  V  V  H  T  C  I  C  L  C  R  S  S  L  T  L  L  C  V  I  T  C  S  Y  V  F  *  T  C  *  F  C  Y  L  M  *  W  *  M  A  C  C  Y  V  I  G  Q  R  S  F  P  E  L  L  R  F  *  N  *  F  A  S  I  V  N  L  S  R  V  C  L  H  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95361" stop="95511"/>
                    <exon start="95606" stop="95686"/>
                    <exon start="96316" stop="96407"/>
                    <exon start="96814" stop="96882"/>
                    <exon start="96979" stop="97020"/>
                    <exon start="98183" stop="98334"/>
                    <exon start="98433" stop="98557"/>
                    <exon start="98969" stop="99053"/>
                    <exon start="99140" stop="99213"/>
                    <exon start="99314" stop="99576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1131</number_coding_nucleotides>
                  <number_encoded_amino_acids>377</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVAQETPPLTFFPAAMAAVGESSSVPAKEDKLVVVRVKRKAFQSRLDAFWLEINERPAKRPLLDFAKLSIDESSSRVEELKSRKVLVQHVETVTSSEVTVDIVKSFVSAPAVSSEVEEKSEVRRSFRTEKKQDQLLAKAKQTQEDLSKNARFEQIWKSRKEKRKLMHNEELNEMCKLYDVIRVDTEEKGREVQEECRTTELEDHKMMSQYLPLLREVMPSAAEEIESEIHNYVVKQASSDGYVYDYYTVKTDNNPDEDIACPFPLVQVDEDDDYYDGPDHSDYESDDSNAEHNPWNDYPDEEESEDEDETQASNDESEASSSTSEEQFGSETVGVISFKTEDVDREDWTDYADPILEDDMYGESDVEASDDDEDIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="95325" e_stop="95511"/>
            <exon e_start="95606" e_stop="95686"/>
            <exon e_start="96316" e_stop="96407"/>
            <exon e_start="96814" e_stop="96882"/>
            <exon e_start="96979" e_stop="97020"/>
            <exon e_start="98183" e_stop="98334"/>
            <exon e_start="98439" e_stop="98557"/>
            <exon e_start="98978" e_stop="99053"/>
            <exon e_start="99140" e_stop="99213"/>
            <exon e_start="99314" e_stop="99841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.728" e_score="1.000"/>
          <exon-intron don_prob="0.749" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="0.987"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95325" e_stop="95511" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.728">
            <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95606" e_stop="95686" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.749" acc_prob="0.998">
            <gDNA_intron_boundary i_start="95687" i_stop="96315" i_length="629"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96316" e_stop="96407" e_length="92"/>
          </exon>
          <intron i_serial="3" don_prob="0.945" acc_prob="0.000">
            <gDNA_intron_boundary i_start="96408" i_stop="96813" i_length="406"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96814" e_stop="96882" e_length="69"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="96883" i_stop="96978" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="96979" e_stop="97020" e_length="42"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.968">
            <gDNA_intron_boundary i_start="97021" i_stop="98182" i_length="1162"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="98183" e_stop="98334" e_length="152"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="98335" i_stop="98438" i_length="104"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="98439" e_stop="98557" e_length="119"/>
          </exon>
          <intron i_serial="7" don_prob="0.935" acc_prob="0.000">
            <gDNA_intron_boundary i_start="98558" i_stop="98977" i_length="420"/>
          </intron>
          <exon e_serial="8" e_score="0.987">
            <gDNA_exon_boundary e_start="98978" e_stop="99053" e_length="76"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99054" i_stop="99139" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="99140" e_stop="99213" e_length="74"/>
          </exon>
          <intron i_serial="9" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="99214" i_stop="99313" i_length="100"/>
          </intron>
          <exon e_serial="10" e_score="0.941">
            <gDNA_exon_boundary e_start="99314" e_stop="99841" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95325" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98267"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95349" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95350" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98334"/>
              <exon start="98439" stop="98557"/>
              <exon start="98978" stop="99053"/>
              <exon start="99140" stop="99213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701230" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95350" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95376" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95377" stop="95511"/>
              <exon start="95606" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95381" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96882"/>
              <exon start="96979" stop="97020"/>
              <exon start="98183" stop="98306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95381" stop="95511"/>
              <exon start="95606" stop="95686"/>
              <exon start="96316" stop="96407"/>
              <exon start="96814" stop="96853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99031" stop="99053"/>
              <exon start="99140" stop="99213"/>
              <exon start="99314" stop="99788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414307" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99151" stop="99213"/>
              <exon start="99314" stop="99563"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99480" stop="99841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99480" stop="99841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346456" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT : GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAG : TTGAGGAATTGAAGAGCAGAAAGGTACTTGTGCAACATGTGGAGACCGTAACTAGCTCAGAAGTCACTGTTGATATCGTGAAGTCTTTTGTG : TCGGCTCCAGCTGTTTCTTCAGAAGTCGAAGAGAAATCTGAGGTTAGGCGAAGTTTTAGGACAGAAAAG : AAACAAGATCAACTACTTGCCAAGGCAAAGCAAACGCAAGAG : GATTTGTCGAAAAATGCCCGGTTTGAGCAAATATGGAAAAGCAGAAAAGAGAAGAGAAAACTAATGCACAATGAAGAGCTGAATGAGATGTGTAAACTATATGATGTTATTCGTGTTGATACTGAAGAAAAAGGCCGAGAAGTGCAAGAAGA : GACTACTGAGCTGGAAGATCACAAGATGATGTCCCAATATTTGCCTCTTTTACGAGAAGTCATGCCAAGTGCTGCTGAAGAAATTGAGTCAGAGATTCATAATTACGTAGTGAAACAAG : ATGGTTACGTTTATGACTATTATACTGTTAAGACTGATAACAACCCTGATGAGGATATTGCTTGCCCTTTTCCATT : GGTACAAGTTGATGAAGATGATGATTACTATGACGGCCCTGATCATTCAGACTACGAATCTGATGATTCCAATG : CTGAACATAATCCCTGGAATGATTACCCGGACGAAGAGGAATCTGAAGACGAGGATGAAACCCAGGCATCAAATGACGAATCAGAAGCTTCAAGCAGCACTTCTGAGGAACAATTTGGATCTGAAACTGTTGGTGTAATTTCTTTTAAAACTGAGGATGTGGACCGTGAAGACTGGACAGATTATGCAGATCCAATCCTTGAAGATGATATGTATGGTGAGTCCGATGTTGAAGCTTCCGATGATGATGAGGATATATGGTGATCATCACTACAACACCATGTTTAAAATTTCTCATCAGTACCTATGTCGTGCATACCTGTATATGTCTTTGCAGATCATCGTTAACCTTGCTTTGTGTGATAACATGTAGTTATGTGTTTTGAACTTGCTAATTCTGCTATCTGATGTAGTGGTGAATGGCATGTTGTTATGTCATTGGGCAAAGATCTTTTCCCGAGCTTTTGCGTTTTTAAAACTAATTTGCCAGTATTGTAAATCTCAGCCGGGTTTGCCTACATCTCAACTG</gDNA_template>
            <first_frame> L  H  I  I  Y  C  E  V  P  I  M  *  V  E  V  A  Q  E  T  P  P  L  T  F  F  P  A  A  M  A  A  V  G  E  S  S  S  V  P  A  K  E  D  K  L  V  V  V  R  V  K  R  K  A  F  Q  S  R  L  D  A  F   : W  L  E  I  N  E  R  P  A  K  R  P  L  L  D  F  A  K  L  S  I  D  E  S  S  S  R   : V  E  E  L  K  S  R  K  V  L  V  Q  H  V  E  T  V  T  S  S  E  V  T  V  D  I  V  K  S  F  V  :  S  A  P  A  V  S  S  E  V  E  E  K  S  E  V  R  R  S  F  R  T  E  K  :  K  Q  D  Q  L  L  A  K  A  K  Q  T  Q  E  :  D  L  S  K  N  A  R  F  E  Q  I  W  K  S  R  K  E  K  R  K  L  M  H  N  E  E  L  N  E  M  C  K  L  Y  D  V  I  R  V  D  T  E  E  K  G  R  E  V  Q  E  E :   T  T  E  L  E  D  H  K  M  M  S  Q  Y  L  P  L  L  R  E  V  M  P  S  A  A  E  E  I  E  S  E  I  H  N  Y  V  V  K  Q   : D  G  Y  V  Y  D  Y  Y  T  V  K  T  D  N  N  P  D  E  D  I  A  C  P  F  P  L :   V  Q  V  D  E  D  D  D  Y  Y  D  G  P  D  H  S  D  Y  E  S  D  D  S  N   : A  E  H  N  P  W  N  D  Y  P  D  E  E  E  S  E  D  E  D  E  T  Q  A  S  N  D  E  S  E  A  S  S  S  T  S  E  E  Q  F  G  S  E  T  V  G  V  I  S  F  K  T  E  D  V  D  R  E  D  W  T  D  Y  A  D  P  I  L  E  D  D  M  Y  G  E  S  D  V  E  A  S  D  D  D  E  D  I  W  *  S  S  L  Q  H  H  V  *  N  F  S  S  V  P  M  S  C  I  P  V  Y  V  F  A  D  H  R  *  P  C  F  V  *  *  H  V  V  M  C  F  E  L  A  N  S  A  I  *  C  S  G  E  W  H  V  V  M  S  L  G  K  D  L  F  P  S  F  C  V  F  K  T  N  L  P  V  L  *  I  S  A  G  F  A  Y  I  S  T  </first_frame>
            <second_frame>  F  I  *  Y  T  V  K  S  Q  L  C  K  S  K  *  L  R  K  H  R  R  *  H  S  F  R  Q  Q  W  L  Q  S  G  R  V  L  L  F  R  R  R  K  T  S  S  S  L  L  G  L  R  E  K  L  S  S  L  D  L  T  L  S  :  G  L  K  S  M  R  G  Q  P  N  D  R  C  S  T  L  Q  S  F  Q  S  M  N  L  L  V  E  :  L  R  N  *  R  A  E  R  Y  L  C  N  M  W  R  P  *  L  A  Q  K  S  L  L  I  S  *  S  L  L  C :   R  L  Q  L  F  L  Q  K  S  K  R  N  L  R  L  G  E  V  L  G  Q  K  R :   N  K  I  N  Y  L  P  R  Q  S  K  R  K  R :   I  C  R  K  M  P  G  L  S  K  Y  G  K  A  E  K  R  R  E  N  *  C  T  M  K  S  *  M  R  C  V  N  Y  M  M  L  F  V  L  I  L  K  K  K  A  E  K  C  K  K   : R  L  L  S  W  K  I  T  R  *  C  P  N  I  C  L  F  Y  E  K  S  C  Q  V  L  L  K  K  L  S  Q  R  F  I  I  T  *  *  N  K  :  M  V  T  F  M  T  I  I  L  L  R  L  I  T  T  L  M  R  I  L  L  A  L  F  H   : W  Y  K  L  M  K  M  M  I  T  M  T  A  L  I  I  Q  T  T  N  L  M  I  P  M  :  L  N  I  I  P  G  M  I  T  R  T  K  R  N  L  K  T  R  M  K  P  R  H  Q  M  T  N  Q  K  L  Q  A  A  L  L  R  N  N  L  D  L  K  L  L  V  *  F  L  L  K  L  R  M  W  T  V  K  T  G  Q  I  M  Q  I  Q  S  L  K  M  I  C  M  V  S  P  M  L  K  L  P  M  M  M  R  I  Y  G  D  H  H  Y  N  T  M  F  K  I  S  H  Q  Y  L  C  R  A  Y  L  Y  M  S  L  Q  I  I  V  N  L  A  L  C  D  N  M  *  L  C  V  L  N  L  L  I  L  L  S  D  V  V  V  N  G  M  L  L  C  H  W  A  K  I  F  S  R  A  F  A  F  L  K  L  I  C  Q  Y  C  K  S  Q  P  G  L  P  T  S  Q  L </second_frame>
            <third_frame>   S  Y  N  I  L  *  S  P  N  Y  V  S  R  S  S  S  G  N  T  A  A  D  I  L  S  G  S  N  G  C  S  R  G  E  F  F  C  S  G  E  G  R  Q  A  R  R  C  *  G  *  E  K  S  F  P  V  S  T  *  R  F  L :   A  *  N  Q  *  E  A  S  Q  T  T  V  A  R  L  C  K  A  F  N  R  *  I  F  *  *  S :   *  G  I  E  E  Q  K  G  T  C  A  T  C  G  D  R  N  *  L  R  S  H  C  *  Y  R  E  V  F  C   : V  G  S  S  C  F  F  R  S  R  R  E  I  *  G  *  A  K  F  *  D  R  K   : E  T  R  S  T  T  C  Q  G  K  A  N  A  R   : G  F  V  E  K  C  P  V  *  A  N  M  E  K  Q  K  R  E  E  K  T  N  A  Q  *  R  A  E  *  D  V  *  T  I  *  C  Y  S  C  *  Y  *  R  K  R  P  R  S  A  R  R  :  D  Y  *  A  G  R  S  Q  D  D  V  P  I  F  A  S  F  T  R  S  H  A  K  C  C  *  R  N  *  V  R  D  S  *  L  R  S  E  T  R :   W  L  R  L  *  L  L  Y  C  *  D  *  *  Q  P  *  *  G  Y  C  L  P  F  S  I  :  G  T  S  *  *  R  *  *  L  L  *  R  P  *  S  F  R  L  R  I  *  *  F  Q  C :   *  T  *  S  L  E  *  L  P  G  R  R  G  I  *  R  R  G  *  N  P  G  I  K  *  R  I  R  S  F  K  Q  H  F  *  G  T  I  W  I  *  N  C  W  C  N  F  F  *  N  *  G  C  G  P  *  R  L  D  R  L  C  R  S  N  P  *  R  *  Y  V  W  *  V  R  C  *  S  F  R  *  *  *  G  Y  M  V  I  I  T  T  T  P  C  L  K  F  L  I  S  T  Y  V  V  H  T  C  I  C  L  C  R  S  S  L  T  L  L  C  V  I  T  C  S  Y  V  F  *  T  C  *  F  C  Y  L  M  *  W  *  M  A  C  C  Y  V  I  G  Q  R  S  F  P  E  L  L  R  F  *  N  *  F  A  S  I  V  N  L  S  R  V  C  L  H  L  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95361" stop="95511"/>
                    <exon start="95606" stop="95686"/>
                    <exon start="96316" stop="96407"/>
                    <exon start="96814" stop="96882"/>
                    <exon start="96979" stop="97020"/>
                    <exon start="98183" stop="98334"/>
                    <exon start="98439" stop="98557"/>
                    <exon start="98978" stop="99053"/>
                    <exon start="99140" stop="99213"/>
                    <exon start="99314" stop="99576"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1116</number_coding_nucleotides>
                  <number_encoded_amino_acids>372</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVAQETPPLTFFPAAMAAVGESSSVPAKEDKLVVVRVKRKAFQSRLDAFWLEINERPAKRPLLDFAKLSIDESSSRVEELKSRKVLVQHVETVTSSEVTVDIVKSFVSAPAVSSEVEEKSEVRRSFRTEKKQDQLLAKAKQTQEDLSKNARFEQIWKSRKEKRKLMHNEELNEMCKLYDVIRVDTEEKGREVQEETTELEDHKMMSQYLPLLREVMPSAAEEIESEIHNYVVKQDGYVYDYYTVKTDNNPDEDIACPFPLVQVDEDDDYYDGPDHSDYESDDSNAEHNPWNDYPDEEESEDEDETQASNDESEASSSTSEEQFGSETVGVISFKTEDVDREDWTDYADPILEDDMYGESDVEASDDDEDIW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="95314" e_stop="95511"/>
            <exon e_start="95606" e_stop="95979"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.950" acc_prob="0.728" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="95314" e_stop="95511" e_length="198"/>
          </exon>
          <intron i_serial="1" don_prob="0.950" acc_prob="0.728">
            <gDNA_intron_boundary i_start="95512" i_stop="95605" i_length="94"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="95606" e_stop="95979" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95314" stop="95511"/>
              <exon start="95606" stop="95948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95314" stop="95511"/>
              <exon start="95606" stop="95916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95324" stop="95511"/>
              <exon start="95606" stop="95979"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="95377" stop="95511"/>
              <exon start="95606" stop="95627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTGCACAAGCTTCATATAATATACTGTGAAGTCCCAATTATGTAAGTCGAAGTAGCTCAGGAAACACCGCCGCTGACATTCTTTCCGGCAGCAATGGCTGCAGTCGGGGAGAGTTCTTCTGTTCCGGCGAAGGAAGACAAGCTCGTCGTTGTTAGGGTTAAGAGAAAAGCTTTCCAGTCTCGACTTGACGCTTTCT : GGCTTGAAATCAATGAGAGGCCAGCCAAACGACCGTTGCTCGACTTTGCAAAGCTTTCAATCGATGAATCTTCTAGTAGAGGTTTGTAAAATTTTGATGGTTAACACTTTAAAGTTCAACATGAGAATTCGGACATTTTTTGAATTTATATAGTATCTGAAATTACTTTTGTAGTTAAAAAGTAGGTTGAAGTATTTCAAATGTCTCAGTTTTTCGAGTTTCTTAGGTGCACTATCAAATAGGTTTGAGTTACTATCACCAACGATTTACAAGAAAACACCTCAATTATCAATTGTATTCTTTTTCCTACCTGAATGATGTTAGTATTTCAGATTGGGCAACGGAACAACGGATAGTTGAAGTGTGTTTTGATA</gDNA_template>
            <first_frame> I  C  T  S  F  I  *  Y  T  V  K  S  Q  L  C  K  S  K  *  L  R  K  H  R  R  *  H  S  F  R  Q  Q  W  L  Q  S  G  R  V  L  L  F  R  R  R  K  T  S  S  S  L  L  G  L  R  E  K  L  S  S  L  D  L  T  L  S  :  G  L  K  S  M  R  G  Q  P  N  D  R  C  S  T  L  Q  S  F  Q  S  M  N  L  L  V  E  V  C  K  I  L  M  V  N  T  L  K  F  N  M  R  I  R  T  F  F  E  F  I  *  Y  L  K  L  L  L  *  L  K  S  R  L  K  Y  F  K  C  L  S  F  S  S  F  L  G  A  L  S  N  R  F  E  L  L  S  P  T  I  Y  K  K  T  P  Q  L  S  I  V  F  F  F  L  P  E  *  C  *  Y  F  R  L  G  N  G  T  T  D  S  *  S  V  F  *   </first_frame>
            <second_frame>  F  A  Q  A  S  Y  N  I  L  *  S  P  N  Y  V  S  R  S  S  S  G  N  T  A  A  D  I  L  S  G  S  N  G  C  S  R  G  E  F  F  C  S  G  E  G  R  Q  A  R  R  C  *  G  *  E  K  S  F  P  V  S  T  *  R  F  L :   A  *  N  Q  *  E  A  S  Q  T  T  V  A  R  L  C  K  A  F  N  R  *  I  F  *  *  R  F  V  K  F  *  W  L  T  L  *  S  S  T  *  E  F  G  H  F  L  N  L  Y  S  I  *  N  Y  F  C  S  *  K  V  G  *  S  I  S  N  V  S  V  F  R  V  S  *  V  H  Y  Q  I  G  L  S  Y  Y  H  Q  R  F  T  R  K  H  L  N  Y  Q  L  Y  S  F  S  Y  L  N  D  V  S  I  S  D  W  A  T  E  Q  R  I  V  E  V  C  F  D  </second_frame>
            <third_frame>   L  H  K  L  H  I  I  Y  C  E  V  P  I  M  *  V  E  V  A  Q  E  T  P  P  L  T  F  F  P  A  A  M  A  A  V  G  E  S  S  S  V  P  A  K  E  D  K  L  V  V  V  R  V  K  R  K  A  F  Q  S  R  L  D  A  F   : W  L  E  I  N  E  R  P  A  K  R  P  L  L  D  F  A  K  L  S  I  D  E  S  S  S  R  G  L  *  N  F  D  G  *  H  F  K  V  Q  H  E  N  S  D  I  F  *  I  Y  I  V  S  E  I  T  F  V  V  K  K  *  V  E  V  F  Q  M  S  Q  F  F  E  F  L  R  C  T  I  K  *  V  *  V  T  I  T  N  D  L  Q  E  N  T  S  I  I  N  C  I  L  F  P  T  *  M  M  L  V  F  Q  I  G  Q  R  N  N  G  *  L  K  C  V  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95392" stop="95511"/>
                    <exon start="95606" stop="95758"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HSFRQQWLQSGRVLLFRRRKTSSSLLGLREKLSSLDLTLSGLKSMRGQPNDRCSTLQSFQSMNLLVEVCKILMVNTLKFNMRIRTFFEFI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="95361" stop="95511"/>
                    <exon start="95606" stop="95694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEVAQETPPLTFFPAAMAAVGESSSVPAKEDKLVVVRVKRKAFQSRLDAFWLEINERPAKRPLLDFAKLSIDESSSRGL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="108023" PGL_stop="108422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108023" e_stop="108422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="108023" e_stop="108422" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108023" stop="108422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309480" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAATTCATTATCGTATTGGCATGTATTTTCACTCACTTTTTTAGCTGGAAACAGTATTTGTTGGATCAATACTGTATCGTACATCGTATCGATTCAGAATTTCCCTTTAGATAGACAAATTGCAGTTGGAATATCAACTAGTTATATAAGTTTAAGCGCTAAGATTGTTACTGATATAGTTGATGTTGTTAACGTTTACGCCCCGAGTAAAAGGGCTGAAACTTATCTATTGATGAACTCTGTTTTACCCCTGTTTTTCGCCATTGTTGTTGCTCCAGTGATTCGGGAGATGAAAATTGATAAATCGAGGAAGTTATCAGATGGATTCCGAGTTATGTTTGTTATTACTATCGCAACGGGGATTTATGCTGTGTTCACCAGCGTAAAACCTGCAATTTC</gDNA_template>
            <first_frame> *  I  H  Y  R  I  G  M  Y  F  H  S  L  F  *  L  E  T  V  F  V  G  S  I  L  Y  R  T  S  Y  R  F  R  I  S  L  *  I  D  K  L  Q  L  E  Y  Q  L  V  I  *  V  *  A  L  R  L  L  L  I  *  L  M  L  L  T  F  T  P  R  V  K  G  L  K  L  I  Y  *  *  T  L  F  Y  P  C  F  S  P  L  L  L  L  Q  *  F  G  R  *  K  L  I  N  R  G  S  Y  Q  M  D  S  E  L  C  L  L  L  L  S  Q  R  G  F  M  L  C  S  P  A  *  N  L  Q  F  </first_frame>
            <second_frame>  K  F  I  I  V  L  A  C  I  F  T  H  F  F  S  W  K  Q  Y  L  L  D  Q  Y  C  I  V  H  R  I  D  S  E  F  P  F  R  *  T  N  C  S  W  N  I  N  *  L  Y  K  F  K  R  *  D  C  Y  *  Y  S  *  C  C  *  R  L  R  P  E  *  K  G  *  N  L  S  I  D  E  L  C  F  T  P  V  F  R  H  C  C  C  S  S  D  S  G  D  E  N  *  *  I  E  E  V  I  R  W  I  P  S  Y  V  C  Y  Y  Y  R  N  G  D  L  C  C  V  H  Q  R  K  T  C  N  F </second_frame>
            <third_frame>   N  S  L  S  Y  W  H  V  F  S  L  T  F  L  A  G  N  S  I  C  W  I  N  T  V  S  Y  I  V  S  I  Q  N  F  P  L  D  R  Q  I  A  V  G  I  S  T  S  Y  I  S  L  S  A  K  I  V  T  D  I  V  D  V  V  N  V  Y  A  P  S  K  R  A  E  T  Y  L  L  M  N  S  V  L  P  L  F  F  A  I  V  V  A  P  V  I  R  E  M  K  I  D  K  S  R  K  L  S  D  G  F  R  V  M  F  V  I  T  I  A  T  G  I  Y  A  V  F  T  S  V  K  P  A  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108025" stop="108420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLSYWHVFSLTFLAGNSICWINTVSYIVSIQNFPLDRQIAVGISTSYISLSAKIVTDIVDVVNVYAPSKRAETYLLMNSVLPLFFAIVVAPVIREMKIDKSRKLSDGFRVMFVITIATGIYAVFTSVKPAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="-" PGL_start="111601" PGL_stop="108646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111601" e_stop="111034"/>
            <exon e_start="108872" e_stop="108646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.777" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111601" e_stop="111034" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.777" acc_prob="0.853">
            <gDNA_intron_boundary i_start="111033" i_stop="108873" i_length="2161"/>
          </intron>
          <exon e_serial="2" e_score="0.965">
            <gDNA_exon_boundary e_start="108872" e_stop="108646" e_length="227"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111601" stop="111034"/>
              <exon start="108872" stop="108646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538868" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATTCGGCTAAAAAAATGCCATTTATATATAACACAGTACATAATCGTTTACCAAAATCTTTTATTTACATTATATAATATAATAATATATACTATACATTAACGTTACGTCTTACCACTAAACAATACTATTACATAAATATAGCTATTAATATCCTCCACGTAAATGTGTATAAAATTTTTGTGTTCTTCTATGAAGAATAAAAGCAAGACATGTTCCTAGTGAACAAAGACAACCCCATATAATAAAAGTTTCTTGAAAACATTTATTTCCCAAACAACTACCTAGTGAATTTTCTTTTTTTCTATAAAGCATAGCTGCCAAATCACCAAATATAAATGAACCAATTGGTATATTTGCTACCACAATATTGTGATTAACACCAAAATTTTTGGTCCCAAATAGTTCAGTGGTTTGTGACACTGAAATTGAAGTGATTGCTCCAGTGCAAATTCCAATTATAGCTGTGCTAATATAAAGTGAAATGTGACTATTGTTGAGTAGTAAAAAGAAAGCTCCTGTCATTGGTGCTAGTGTTAAACCTATCGTAGCTGGTCTTGATATT : AGAAATTTGCACCTGGAGAAAAGGTAGTCGAAGAGCGAAGGAAGAAGACGACCAAAGAAGCCGAATGAAGATGATAGCGAAACCAATGAAGAAGTTTCAGTAAATCCACGAGTATCAGCAATTTGCCCCAAATTATTCAAGTAAACCAAACCCAATGTTCCACCAAACAAATAAGCAAAAAAATATAACCAAAAATCCAATTTCATCAACATTCTCTTAGCTCCAAT</gDNA_template>
            <first_frame> F  I  R  L  K  K  C  H  L  Y  I  T  Q  Y  I  I  V  Y  Q  N  L  L  F  T  L  Y  N  I  I  I  Y  T  I  H  *  R  Y  V  L  P  L  N  N  T  I  T  *  I  *  L  L  I  S  S  T  *  M  C  I  K  F  L  C  S  S  M  K  N  K  S  K  T  C  S  *  *  T  K  T  T  P  Y  N  K  S  F  L  K  T  F  I  S  Q  T  T  T  *  *  I  F  F  F  S  I  K  H  S  C  Q  I  T  K  Y  K  *  T  N  W  Y  I  C  Y  H  N  I  V  I  N  T  K  I  F  G  P  K  *  F  S  G  L  *  H  *  N  *  S  D  C  S  S  A  N  S  N  Y  S  C  A  N  I  K  *  N  V  T  I  V  E  *  *  K  E  S  S  C  H  W  C  *  C  *  T  Y  R  S  W  S  *  Y   : *  K  F  A  P  G  E  K  V  V  E  E  R  R  K  K  T  T  K  E  A  E  *  R  *  *  R  N  Q  *  R  S  F  S  K  S  T  S  I  S  N  L  P  Q  I  I  Q  V  N  Q  T  Q  C  S  T  K  Q  I  S  K  K  I  *  P  K  I  Q  F  H  Q  H  S  L  S  S  N </first_frame>
            <second_frame>  S  F  G  *  K  N  A  I  Y  I  *  H  S  T  *  S  F  T  K  I  F  Y  L  H  Y  I  I  *  *  Y  I  L  Y  I  N  V  T  S  Y  H  *  T  I  L  L  H  K  Y  S  Y  *  Y  P  P  R  K  C  V  *  N  F  C  V  L  L  *  R  I  K  A  R  H  V  P  S  E  Q  R  Q  P  H  I  I  K  V  S  *  K  H  L  F  P  K  Q  L  P  S  E  F  S  F  F  L  *  S  I  A  A  K  S  P  N  I  N  E  P  I  G  I  F  A  T  T  I  L  *  L  T  P  K  F  L  V  P  N  S  S  V  V  C  D  T  E  I  E  V  I  A  P  V  Q  I  P  I  I  A  V  L  I  *  S  E  M  *  L  L  L  S  S  K  K  K  A  P  V  I  G  A  S  V  K  P  I  V  A  G  L  D  I  :  R  N  L  H  L  E  K  R  *  S  K  S  E  G  R  R  R  P  K  K  P  N  E  D  D  S  E  T  N  E  E  V  S  V  N  P  R  V  S  A  I  C  P  K  L  F  K  *  T  K  P  N  V  P  P  N  K  *  A  K  K  Y  N  Q  K  S  N  F  I  N  I  L  L  A  P   </second_frame>
            <third_frame>   H  S  A  K  K  M  P  F  I  Y  N  T  V  H  N  R  L  P  K  S  F  I  Y  I  I  *  Y  N  N  I  Y  Y  T  L  T  L  R  L  T  T  K  Q  Y  Y  Y  I  N  I  A  I  N  I  L  H  V  N  V  Y  K  I  F  V  F  F  Y  E  E  *  K  Q  D  M  F  L  V  N  K  D  N  P  I  *  *  K  F  L  E  N  I  Y  F  P  N  N  Y  L  V  N  F  L  F  F  Y  K  A  *  L  P  N  H  Q  I  *  M  N  Q  L  V  Y  L  L  P  Q  Y  C  D  *  H  Q  N  F  W  S  Q  I  V  Q  W  F  V  T  L  K  L  K  *  L  L  Q  C  K  F  Q  L  *  L  C  *  Y  K  V  K  C  D  Y  C  *  V  V  K  R  K  L  L  S  L  V  L  V  L  N  L  S  *  L  V  L  I  L :   E  I  C  T  W  R  K  G  S  R  R  A  K  E  E  D  D  Q  R  S  R  M  K  M  I  A  K  P  M  K  K  F  Q  *  I  H  E  Y  Q  Q  F  A  P  N  Y  S  S  K  P  N  P  M  F  H  Q  T  N  K  Q  K  N  I  T  K  N  P  I  S  S  T  F  S  *  L  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C06SLm0106A20.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="111168" PGL_stop="111600"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111168" e_stop="111600"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111168" e_stop="111600" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111168" stop="111600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278798" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTCAGTGTCACAAACCACTGAACTATTTGGGACCAAAAATTTTGGTGTTAATCACAATATTGTGGTAGCAAATATACCAATTGGTTCATTTATATTTGGTGATTTGGCAGCTATGCTTTATAGAAAAAAAGAAAATTCACTAGGTAGTTGTTTGGGAAATAAATGTTTTCAAGAAACTTTTATTATATGGGGTTGTCTTTGTTCACTAGGAACATGTCTTGCTTTTATTCTTCATAGAAGAACACAAAAATTTTATACACATTTACGTGGAGGATATTAATAGCTATATTTATGTAATAGTATTGTTTAGTGGTAAGACGTAACGTTAATGTATAGTATATATTATTATATTATATAATGTAAATAAAAGATTTTGGTAAACGATTATGTACTGTGTTATATATAAATGGCATTTTTTTAGCCGAATGA</gDNA_template>
            <first_frame> Q  F  Q  C  H  K  P  L  N  Y  L  G  P  K  I  L  V  L  I  T  I  L  W  *  Q  I  Y  Q  L  V  H  L  Y  L  V  I  W  Q  L  C  F  I  E  K  K  K  I  H  *  V  V  V  W  E  I  N  V  F  K  K  L  L  L  Y  G  V  V  F  V  H  *  E  H  V  L  L  L  F  F  I  E  E  H  K  N  F  I  H  I  Y  V  E  D  I  N  S  Y  I  Y  V  I  V  L  F  S  G  K  T  *  R  *  C  I  V  Y  I  I  I  L  Y  N  V  N  K  R  F  W  *  T  I  M  Y  C  V  I  Y  K  W  H  F  F  S  R  M  </first_frame>
            <second_frame>  N  F  S  V  T  N  H  *  T  I  W  D  Q  K  F  W  C  *  S  Q  Y  C  G  S  K  Y  T  N  W  F  I  Y  I  W  *  F  G  S  Y  A  L  *  K  K  R  K  F  T  R  *  L  F  G  K  *  M  F  S  R  N  F  Y  Y  M  G  L  S  L  F  T  R  N  M  S  C  F  Y  S  S  *  K  N  T  K  I  L  Y  T  F  T  W  R  I  L  I  A  I  F  M  *  *  Y  C  L  V  V  R  R  N  V  N  V  *  Y  I  L  L  Y  Y  I  M  *  I  K  D  F  G  K  R  L  C  T  V  L  Y  I  N  G  I  F  L  A  E  * </second_frame>
            <third_frame>   I  S  V  S  Q  T  T  E  L  F  G  T  K  N  F  G  V  N  H  N  I  V  V  A  N  I  P  I  G  S  F  I  F  G  D  L  A  A  M  L  Y  R  K  K  E  N  S  L  G  S  C  L  G  N  K  C  F  Q  E  T  F  I  I  W  G  C  L  C  S  L  G  T  C  L  A  F  I  L  H  R  R  T  Q  K  F  Y  T  H  L  R  G  G  Y  *  *  L  Y  L  C  N  S  I  V  *  W  *  D  V  T  L  M  Y  S  I  Y  Y  Y  I  I  *  C  K  *  K  I  L  V  N  D  Y  V  L  C  Y  I  *  M  A  F  F  *  P  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C06SLm0106A20.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111170" stop="111451"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISVSQTTELFGTKNFGVNHNIVVANIPIGSFIFGDLAAMLYRKKENSLGSCLGNKCFQETFIIWGCLCSLGTCLAFILHRRTQKFYTHLRGGY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 183 chains have been computed
$ 
$ memory statistics:
$ 827032 bytes spliced alignments in total
$ 133 spliced alignments have been stored
$ 6218 bytes was the average size of a spliced alignment
$ 34400 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 1563 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 197 backtrace matrices have been allocated
$ 
$ date finished: 2009-07-28 10:22:43
-->
